Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067528.t1 | XP_013459271.1 | 98.5 | 197 | 3 | 0 | 1 | 197 | 1 | 197 | 2.40E-103 | 384.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067528.t1 | O13737 | 36.8 | 182 | 98 | 3 | 6 | 186 | 4 | 169 | 9.8e-21 | 101.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067528.t1 | A0A072UUK5 | 98.5 | 197 | 3 | 0 | 1 | 197 | 1 | 197 | 1.7e-103 | 384.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067528 | MS.gene018905 | PPI |
| MS.gene067530 | MS.gene067528 | PPI |
| MS.gene03534 | MS.gene067528 | PPI |
| MS.gene03531 | MS.gene067528 | PPI |
| MS.gene067528 | MS.gene018908 | PPI |
| MS.gene067529 | MS.gene067528 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067528.t1 | MTR_3g435230 | 98.477 | 197 | 3 | 0 | 1 | 197 | 1 | 197 | 3.04e-141 | 392 |
| MS.gene067528.t1 | MTR_3g435250 | 77.665 | 197 | 44 | 0 | 1 | 197 | 1 | 197 | 4.60e-111 | 315 |
| MS.gene067528.t1 | MTR_3g435170 | 78.919 | 185 | 39 | 0 | 1 | 185 | 1 | 185 | 5.79e-109 | 310 |
| MS.gene067528.t1 | MTR_3g435200 | 73.604 | 197 | 50 | 1 | 1 | 197 | 1 | 195 | 2.50e-106 | 303 |
| MS.gene067528.t1 | MTR_3g435230 | 98.519 | 135 | 2 | 0 | 1 | 135 | 1 | 135 | 2.02e-92 | 266 |
| MS.gene067528.t1 | MTR_5g041930 | 63.131 | 198 | 71 | 2 | 2 | 197 | 5 | 202 | 1.37e-91 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067528.t1 | AT1G18720 | 62.121 | 198 | 72 | 1 | 1 | 195 | 5 | 202 | 1.18e-86 | 254 |
| MS.gene067528.t1 | AT1G18720 | 62.121 | 198 | 72 | 1 | 1 | 195 | 5 | 202 | 1.18e-86 | 254 |
| MS.gene067528.t1 | AT1G74440 | 59.487 | 195 | 72 | 2 | 1 | 190 | 5 | 197 | 2.06e-79 | 236 |
| MS.gene067528.t1 | AT1G74440 | 59.487 | 195 | 72 | 2 | 1 | 190 | 5 | 197 | 2.06e-79 | 236 |
Find 49 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGGATTGCAACGTTTAT+AGG | 0.263985 | 3.2:+26517699 | None:intergenic |
| GGTTGGATTGGACAGTTTAT+TGG | 0.309728 | 3.2:-26515435 | MS.gene067528:CDS |
| CAATCCATATCCTCTTTGTT+TGG | 0.315131 | 3.2:-26517686 | MS.gene067528:CDS |
| TTTGTTTGAAATCCAGGATA+TGG | 0.330815 | 3.2:+26515128 | None:intergenic |
| TATGGATTGCAACGTTTATA+GGG | 0.334944 | 3.2:+26517700 | None:intergenic |
| GTCCAATCCAACCAATCAAT+TGG | 0.361090 | 3.2:+26515445 | None:intergenic |
| GAAACGTGCACCAGCTCTAT+TGG | 0.365026 | 3.2:-26515307 | MS.gene067528:CDS |
| GTTTGGGAGGGAGTGAAAAT+AGG | 0.368082 | 3.2:+26517621 | None:intergenic |
| TATAAGATTAAGAACTGTTT+GGG | 0.379547 | 3.2:+26517605 | None:intergenic |
| GAGGCCAAACAAAGAGGATA+TGG | 0.380706 | 3.2:+26517682 | None:intergenic |
| TTCACGTTTGTTTGAAATCC+AGG | 0.387211 | 3.2:+26515122 | None:intergenic |
| GTGTTGGTTGCCCAATTGAT+TGG | 0.399732 | 3.2:-26515456 | MS.gene067528:CDS |
| CACTCGGATTCGAACTTGCT+TGG | 0.412760 | 3.2:-26517440 | MS.gene067528:CDS |
| ATTGGATATGAGCCATATCC+TGG | 0.420935 | 3.2:-26515140 | MS.gene067528:CDS |
| GTATAAGATTAAGAACTGTT+TGG | 0.424126 | 3.2:+26517604 | None:intergenic |
| TCTAATCTTTCAGGTTGTGT+TGG | 0.439107 | 3.2:-26515472 | MS.gene067528:intron |
| GCCCAATTGATTGGTTGGAT+TGG | 0.447523 | 3.2:-26515447 | MS.gene067528:CDS |
| GTAGAATGAGAGCAGTGAAA+AGG | 0.456417 | 3.2:+26517658 | None:intergenic |
| GCTCATATCCAATGGATGAT+TGG | 0.461611 | 3.2:+26515150 | None:intergenic |
| TATTGGTCATGGTGCGTTTG+AGG | 0.463753 | 3.2:-26515418 | MS.gene067528:intron |
| CGGATTCGAACTTGCTTGGA+AGG | 0.476428 | 3.2:-26517436 | MS.gene067528:intron |
| GCTGCTTTGGATATTAAAGC+TGG | 0.485970 | 3.2:-26517522 | MS.gene067528:CDS |
| CCAAGGTTGAAAACAAAGAC+AGG | 0.489419 | 3.2:+26517579 | None:intergenic |
| ACCTCAAGAATCACGAAGAA+AGG | 0.489805 | 3.2:+26515255 | None:intergenic |
| TCCAATCCAACCAATCAATT+GGG | 0.491597 | 3.2:+26515446 | None:intergenic |
| TGGTTGCCCAATTGATTGGT+TGG | 0.499293 | 3.2:-26515452 | MS.gene067528:CDS |
| ATTGGACAGTTTATTGGTCA+TGG | 0.500038 | 3.2:-26515429 | MS.gene067528:CDS |
| AAGTTCGAATCCGAGTGAAT+TGG | 0.504810 | 3.2:+26517446 | None:intergenic |
| TCCTTTCTTCGTGATTCTTG+AGG | 0.512452 | 3.2:-26515256 | MS.gene067528:intron |
| TAGGTCCTCCAATCATCCAT+TGG | 0.519762 | 3.2:-26515158 | MS.gene067528:CDS |
| AGTTTCATTGCCAATTCACT+CGG | 0.526168 | 3.2:-26517456 | MS.gene067528:CDS |
| TTCAAACAAACGTGAAGGCA+AGG | 0.529529 | 3.2:-26515115 | MS.gene067528:CDS |
| TTGAAGCTAATATCAAAGAA+TGG | 0.535037 | 3.2:-26515091 | MS.gene067528:CDS |
| AGATTAAGAACTGTTTGGGA+GGG | 0.555036 | 3.2:+26517609 | None:intergenic |
| TGGGAGGGAGTGAAAATAGG+AGG | 0.558963 | 3.2:+26517624 | None:intergenic |
| AGCTAATATCAAAGAATGGA+AGG | 0.567505 | 3.2:-26515087 | MS.gene067528:CDS |
| GGGAGGGAGTGAAAATAGGA+GGG | 0.569948 | 3.2:+26517625 | None:intergenic |
| CCATTAAAAGAGCTTGAGCA+AGG | 0.583147 | 3.2:+26515280 | None:intergenic |
| AGGATATGGCTCATATCCAA+TGG | 0.583632 | 3.2:+26515142 | None:intergenic |
| ATAGAAAAGAGCGTAGAAAA+CGG | 0.587027 | 3.2:+26517545 | None:intergenic |
| CATATCCAATGGATGATTGG+AGG | 0.587801 | 3.2:+26515153 | None:intergenic |
| GCAAGGTTGTCCAATAGAGC+TGG | 0.589383 | 3.2:+26515297 | None:intergenic |
| AAGATTAAGAACTGTTTGGG+AGG | 0.603667 | 3.2:+26517608 | None:intergenic |
| ATGAGAGCAGTGAAAAGGAG+AGG | 0.633421 | 3.2:+26517663 | None:intergenic |
| TGGATTTCAAACAAACGTGA+AGG | 0.637335 | 3.2:-26515120 | MS.gene067528:CDS |
| AAACGGTGAAGATGAAGCCA+AGG | 0.637714 | 3.2:+26517562 | None:intergenic |
| GGAGGGAGTGAAAATAGGAG+GGG | 0.645109 | 3.2:+26517626 | None:intergenic |
| CAAGGTTGAAAACAAAGACA+GGG | 0.647692 | 3.2:+26517580 | None:intergenic |
| AAAGGAGAGGCCAAACAAAG+AGG | 0.665681 | 3.2:+26517676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATCATAAAATATTCT+GGG | + | chr3.2:26516113-26516132 | None:intergenic | 10.0% |
| !! | TTAAAAATCATAAAATATTC+TGG | + | chr3.2:26516114-26516133 | None:intergenic | 10.0% |
| !!! | GTTTTTTTTACTTATAATTT+GGG | + | chr3.2:26516656-26516675 | None:intergenic | 10.0% |
| !! | ATTATTTACACATTTAAACA+AGG | - | chr3.2:26515717-26515736 | MS.gene067528:intron | 15.0% |
| !! | TCTTACTTAATATAAATCAA+AGG | + | chr3.2:26517307-26517326 | None:intergenic | 15.0% |
| !!! | AAACAATTTTCATTTGTTAT+TGG | + | chr3.2:26516785-26516804 | None:intergenic | 15.0% |
| !!! | ACAATATTAATTTGTTTTGT+AGG | - | chr3.2:26517640-26517659 | MS.gene067528:CDS | 15.0% |
| !!! | CAAAAAATTATTTTTTCCAA+AGG | - | chr3.2:26516706-26516725 | MS.gene067528:intron | 15.0% |
| !!! | GGTTTTTTTTACTTATAATT+TGG | + | chr3.2:26516657-26516676 | None:intergenic | 15.0% |
| !!! | TCAAGATTACATTTTTTTTA+GGG | + | chr3.2:26516411-26516430 | None:intergenic | 15.0% |
| !!! | TTTTTGCTTATAATTTGAAA+CGG | + | chr3.2:26516616-26516635 | None:intergenic | 15.0% |
| !! | ATCCTTGAAATAAGATTTAT+AGG | + | chr3.2:26516817-26516836 | None:intergenic | 20.0% |
| !! | CTAAATAAATGTTGAATTAG+TGG | - | chr3.2:26516535-26516554 | MS.gene067528:intron | 20.0% |
| !! | TACTTAATATAAATCAAAGG+TGG | + | chr3.2:26517304-26517323 | None:intergenic | 20.0% |
| !! | TATAAGATTAAGAACTGTTT+GGG | + | chr3.2:26515215-26515234 | None:intergenic | 20.0% |
| !! | TATTGACATATGAATCTAAA+GGG | - | chr3.2:26516199-26516218 | MS.gene067528:intron | 20.0% |
| !! | TATTTCAAACTCTAATAGTT+TGG | - | chr3.2:26515457-26515476 | MS.gene067528:CDS | 20.0% |
| !! | TTATTGACATATGAATCTAA+AGG | - | chr3.2:26516198-26516217 | MS.gene067528:intron | 20.0% |
| !!! | AAAGTGTAATTTGTATTGTA+TGG | + | chr3.2:26515950-26515969 | None:intergenic | 20.0% |
| !!! | GTCAAGATTACATTTTTTTT+AGG | + | chr3.2:26516412-26516431 | None:intergenic | 20.0% |
| !!! | TAATAAAGTAGTTGATAGTT+GGG | - | chr3.2:26517037-26517056 | MS.gene067528:intron | 20.0% |
| !!! | TTAATAAAGTAGTTGATAGT+TGG | - | chr3.2:26517036-26517055 | MS.gene067528:intron | 20.0% |
| !!! | TTCCTATAAATCTTATTTCA+AGG | - | chr3.2:26516812-26516831 | MS.gene067528:intron | 20.0% |
| !!! | TTTGTTTTTATCGTAATAGT+TGG | + | chr3.2:26515640-26515659 | None:intergenic | 20.0% |
| !!! | TTTTTAGTTATAATATGGGA+CGG | - | chr3.2:26516896-26516915 | MS.gene067528:intron | 20.0% |
| ! | AGTAAGATTATGCTTTGATT+AGG | - | chr3.2:26517320-26517339 | MS.gene067528:intron | 25.0% |
| ! | AGTCTATTGTTGATGTTAAT+AGG | - | chr3.2:26516275-26516294 | MS.gene067528:intron | 25.0% |
| ! | ATTTAGAAAATGAAAGAGAG+AGG | + | chr3.2:26516760-26516779 | None:intergenic | 25.0% |
| ! | CGATTCCATATTGTATTATT+TGG | + | chr3.2:26515537-26515556 | None:intergenic | 25.0% |
| ! | CTTCACTTCATTAATTAAGT+TGG | + | chr3.2:26516946-26516965 | None:intergenic | 25.0% |
| ! | GTATAAGATTAAGAACTGTT+TGG | + | chr3.2:26515216-26515235 | None:intergenic | 25.0% |
| ! | GTCAATAACGAATTCATTAT+TGG | + | chr3.2:26516186-26516205 | None:intergenic | 25.0% |
| ! | TATATGTGTTAAAACCAAGT+TGG | + | chr3.2:26515802-26515821 | None:intergenic | 25.0% |
| ! | TGATTCTTGAGGTAATTATT+TGG | - | chr3.2:26517572-26517591 | MS.gene067528:CDS | 25.0% |
| ! | TGTGTCCAAATAATACAATA+TGG | - | chr3.2:26515529-26515548 | MS.gene067528:intron | 25.0% |
| ! | TTGAAGCTAATATCAAAGAA+TGG | - | chr3.2:26517726-26517745 | MS.gene067528:CDS | 25.0% |
| ! | TTGTGAAAAATAATAGAGCA+AGG | + | chr3.2:26517458-26517477 | None:intergenic | 25.0% |
| ! | TTTGATTCAAATTGGAAACA+AGG | - | chr3.2:26517614-26517633 | MS.gene067528:CDS | 25.0% |
| ! | TTTGTATGTTTCATGTGATA+AGG | + | chr3.2:26516455-26516474 | None:intergenic | 25.0% |
| !! | ATAATTTGGGACAAAGAAAA+TGG | + | chr3.2:26516643-26516662 | None:intergenic | 25.0% |
| !!! | AGGGATAAATTTGTCATTTT+GGG | - | chr3.2:26517236-26517255 | MS.gene067528:intron | 25.0% |
| !!! | CTTTGCATTTAATTTTCCTT+TGG | + | chr3.2:26516725-26516744 | None:intergenic | 25.0% |
| !!! | GGTTTTAACACATATAAACT+TGG | - | chr3.2:26515806-26515825 | MS.gene067528:intron | 25.0% |
| AAATCATTGATCCATCCTAT+TGG | - | chr3.2:26517423-26517442 | MS.gene067528:intron | 30.0% | |
| AAATGCATCCTTATCATCAT+AGG | - | chr3.2:26516361-26516380 | MS.gene067528:intron | 30.0% | |
| ACAATGAACATGCAAAGTAT+AGG | - | chr3.2:26516570-26516589 | MS.gene067528:intron | 30.0% | |
| ACTATCAAGCTTCATTTATG+TGG | + | chr3.2:26516328-26516347 | None:intergenic | 30.0% | |
| AGCTAATATCAAAGAATGGA+AGG | - | chr3.2:26517730-26517749 | MS.gene067528:CDS | 30.0% | |
| GAAAAACACTTTGCATTCTA+TGG | - | chr3.2:26515079-26515098 | MS.gene067528:CDS | 30.0% | |
| TATAAGTGCCTATGATGATA+AGG | + | chr3.2:26516372-26516391 | None:intergenic | 30.0% | |
| TGATGTTAATAGGCACAAAT+AGG | - | chr3.2:26516285-26516304 | MS.gene067528:intron | 30.0% | |
| TGCAATTAGGATTAGAGATT+TGG | - | chr3.2:26517268-26517287 | MS.gene067528:intron | 30.0% | |
| TTATCATCATAGGCACTTAT+AGG | - | chr3.2:26516371-26516390 | MS.gene067528:intron | 30.0% | |
| TTGGTTCCTCATTATAGATT+AGG | - | chr3.2:26515825-26515844 | MS.gene067528:intron | 30.0% | |
| TTTCATGTGATAAGGTTCAT+TGG | + | chr3.2:26516447-26516466 | None:intergenic | 30.0% | |
| ! | ATAGAAAAGAGCGTAGAAAA+CGG | + | chr3.2:26515275-26515294 | None:intergenic | 30.0% |
| ! | ATATGGATTGCAACGTTTAT+AGG | + | chr3.2:26515121-26515140 | None:intergenic | 30.0% |
| ! | TATGGATTGCAACGTTTATA+GGG | + | chr3.2:26515120-26515139 | None:intergenic | 30.0% |
| ! | TGCTTATAATTTGAAACGGA+TGG | + | chr3.2:26516612-26516631 | None:intergenic | 30.0% |
| ! | TGTCTCTTTTATTCATTGAG+TGG | - | chr3.2:26517116-26517135 | MS.gene067528:intron | 30.0% |
| ! | TTTGTTTGAAATCCAGGATA+TGG | + | chr3.2:26517692-26517711 | None:intergenic | 30.0% |
| !! | ATTAAAGCTGGTTCTTTTGT+TGG | - | chr3.2:26515307-26515326 | MS.gene067528:CDS | 30.0% |
| !! | CAGGGATAAATTTGTCATTT+TGG | - | chr3.2:26517235-26517254 | MS.gene067528:intron | 30.0% |
| !! | CTTCATCACTTTTCTTTGTT+GGG | - | chr3.2:26515330-26515349 | MS.gene067528:intron | 30.0% |
| !!! | AATTTGTCATTTTGGGTGTT+AGG | - | chr3.2:26517243-26517262 | MS.gene067528:intron | 30.0% |
| !!! | ATTTGTCATTTTGGGTGTTA+GGG | - | chr3.2:26517244-26517263 | MS.gene067528:intron | 30.0% |
| !!! | GAACTGGTTTTGATTCAAAT+TGG | - | chr3.2:26517606-26517625 | MS.gene067528:CDS | 30.0% |
| AAGATTAAGAACTGTTTGGG+AGG | + | chr3.2:26515212-26515231 | None:intergenic | 35.0% | |
| AATGCAGGAAAGCAACAAAT+TGG | - | chr3.2:26517193-26517212 | MS.gene067528:intron | 35.0% | |
| AGATTAAGAACTGTTTGGGA+GGG | + | chr3.2:26515211-26515230 | None:intergenic | 35.0% | |
| AGGGAAATGACTTGATATTC+AGG | - | chr3.2:26517216-26517235 | MS.gene067528:intron | 35.0% | |
| AGTTTCATTGCCAATTCACT+CGG | - | chr3.2:26515361-26515380 | MS.gene067528:intron | 35.0% | |
| ATTGGACAGTTTATTGGTCA+TGG | - | chr3.2:26517388-26517407 | MS.gene067528:intron | 35.0% | |
| CAAGGTTGAAAACAAAGACA+GGG | + | chr3.2:26515240-26515259 | None:intergenic | 35.0% | |
| CAATCCATATCCTCTTTGTT+TGG | - | chr3.2:26515131-26515150 | MS.gene067528:CDS | 35.0% | |
| CATGCAAAGTATAGGATCAT+AGG | - | chr3.2:26516578-26516597 | MS.gene067528:intron | 35.0% | |
| GAACTCATTAACCAAGACTT+AGG | + | chr3.2:26517063-26517082 | None:intergenic | 35.0% | |
| GAGGTAATTATTTGGCATAG+TGG | - | chr3.2:26517580-26517599 | MS.gene067528:CDS | 35.0% | |
| GATTAGGACTCTAATCTTTC+AGG | - | chr3.2:26517336-26517355 | MS.gene067528:intron | 35.0% | |
| GGGAAATGACTTGATATTCA+GGG | - | chr3.2:26517217-26517236 | MS.gene067528:intron | 35.0% | |
| TAGTTATAATATGGGACGGA+GGG | - | chr3.2:26516900-26516919 | MS.gene067528:intron | 35.0% | |
| TCCAATCCAACCAATCAATT+GGG | + | chr3.2:26517374-26517393 | None:intergenic | 35.0% | |
| TGGATTTCAAACAAACGTGA+AGG | - | chr3.2:26517697-26517716 | MS.gene067528:CDS | 35.0% | |
| TTAGCATAACAGGCACAAAT+AGG | - | chr3.2:26517004-26517023 | MS.gene067528:intron | 35.0% | |
| TTAGTTATAATATGGGACGG+AGG | - | chr3.2:26516899-26516918 | MS.gene067528:intron | 35.0% | |
| ! | CTTGCTCAAGCTCTTTTAAT+GGG | - | chr3.2:26517538-26517557 | MS.gene067528:CDS | 35.0% |
| ! | TTCACGTTTGTTTGAAATCC+AGG | + | chr3.2:26517698-26517717 | None:intergenic | 35.0% |
| !! | GCTTCATCACTTTTCTTTGT+TGG | - | chr3.2:26515329-26515348 | MS.gene067528:intron | 35.0% |
| !! | TCTAATCTTTCAGGTTGTGT+TGG | - | chr3.2:26517345-26517364 | MS.gene067528:intron | 35.0% |
| AAGTTCGAATCCGAGTGAAT+TGG | + | chr3.2:26515374-26515393 | None:intergenic | 40.0% | |
| ACACTCAACTATCCACCATT+TGG | + | chr3.2:26515862-26515881 | None:intergenic | 40.0% | |
| ACCAAGGAAAAATGTGTGAG+TGG | - | chr3.2:26517145-26517164 | MS.gene067528:intron | 40.0% | |
| ACCTCAAGAATCACGAAGAA+AGG | + | chr3.2:26517565-26517584 | None:intergenic | 40.0% | |
| ACGTGCAATCTTAGCATAAC+AGG | - | chr3.2:26516994-26517013 | MS.gene067528:intron | 40.0% | |
| AGGATATGGCTCATATCCAA+TGG | + | chr3.2:26517678-26517697 | None:intergenic | 40.0% | |
| ATTGGATATGAGCCATATCC+TGG | - | chr3.2:26517677-26517696 | MS.gene067528:CDS | 40.0% | |
| CAGGAAAGCAACAAATTGGA+GGG | - | chr3.2:26517197-26517216 | MS.gene067528:intron | 40.0% | |
| CATATCCAATGGATGATTGG+AGG | + | chr3.2:26517667-26517686 | None:intergenic | 40.0% | |
| CCAAGGAAAAATGTGTGAGT+GGG | - | chr3.2:26517146-26517165 | MS.gene067528:intron | 40.0% | |
| CCAAGGTTGAAAACAAAGAC+AGG | + | chr3.2:26515241-26515260 | None:intergenic | 40.0% | |
| CCATTAAAAGAGCTTGAGCA+AGG | + | chr3.2:26517540-26517559 | None:intergenic | 40.0% | |
| GCTCATATCCAATGGATGAT+TGG | + | chr3.2:26517670-26517689 | None:intergenic | 40.0% | |
| GGCTGACCTAATCTATAATG+AGG | + | chr3.2:26515834-26515853 | None:intergenic | 40.0% | |
| GTAGAATGAGAGCAGTGAAA+AGG | + | chr3.2:26515162-26515181 | None:intergenic | 40.0% | |
| GTCCAATCCAACCAATCAAT+TGG | + | chr3.2:26517375-26517394 | None:intergenic | 40.0% | |
| GTGAGATAGTTGTTGTCCTA+TGG | - | chr3.2:26516965-26516984 | MS.gene067528:intron | 40.0% | |
| TAGTGGTTCAAGACTAATGC+AGG | - | chr3.2:26517178-26517197 | MS.gene067528:intron | 40.0% | |
| TATTTGGACACACGTGAACT+CGG | + | chr3.2:26515521-26515540 | None:intergenic | 40.0% | |
| TCCTTTCTTCGTGATTCTTG+AGG | - | chr3.2:26517561-26517580 | MS.gene067528:CDS | 40.0% | |
| TGCCTTCTATGAAGTTTGCA+CGG | - | chr3.2:26516501-26516520 | MS.gene067528:intron | 40.0% | |
| TTCAAACAAACGTGAAGGCA+AGG | - | chr3.2:26517702-26517721 | MS.gene067528:CDS | 40.0% | |
| TTTGGCATAGTGGTTTGAAC+TGG | - | chr3.2:26517590-26517609 | MS.gene067528:CDS | 40.0% | |
| ! | CCTTGCTCAAGCTCTTTTAA+TGG | - | chr3.2:26517537-26517556 | MS.gene067528:CDS | 40.0% |
| ! | GATTGCACGTTTTTCACCAT+AGG | + | chr3.2:26516984-26517003 | None:intergenic | 40.0% |
| ! | GCTGCTTTGGATATTAAAGC+TGG | - | chr3.2:26515295-26515314 | MS.gene067528:CDS | 40.0% |
| ! | GGTTGGATTGGACAGTTTAT+TGG | - | chr3.2:26517382-26517401 | MS.gene067528:intron | 40.0% |
| !! | AATGGTGGATAGTTGAGTGT+AGG | - | chr3.2:26515862-26515881 | MS.gene067528:intron | 40.0% |
| !! | ATGGTGGATAGTTGAGTGTA+GGG | - | chr3.2:26515863-26515882 | MS.gene067528:intron | 40.0% |
| !! | CATAGAAGGCATTTGATGCA+TGG | + | chr3.2:26516492-26516511 | None:intergenic | 40.0% |
| !!! | CCTGTCTTTGTTTTCAACCT+TGG | - | chr3.2:26515238-26515257 | MS.gene067528:intron | 40.0% |
| AAACGGTGAAGATGAAGCCA+AGG | + | chr3.2:26515258-26515277 | None:intergenic | 45.0% | |
| AAAGGAGAGGCCAAACAAAG+AGG | + | chr3.2:26515144-26515163 | None:intergenic | 45.0% | |
| ACTATCCACCATTTGGCTAG+AGG | + | chr3.2:26515855-26515874 | None:intergenic | 45.0% | |
| ATGAGAGCAGTGAAAAGGAG+AGG | + | chr3.2:26515157-26515176 | None:intergenic | 45.0% | |
| ATTTGGACACACGTGAACTC+GGG | + | chr3.2:26515520-26515539 | None:intergenic | 45.0% | |
| GAGGCCAAACAAAGAGGATA+TGG | + | chr3.2:26515138-26515157 | None:intergenic | 45.0% | |
| GCAAGGTTACGTTGTCCAAT+AGG | + | chr3.2:26517441-26517460 | None:intergenic | 45.0% | |
| GCAGGAAAGCAACAAATTGG+AGG | - | chr3.2:26517196-26517215 | MS.gene067528:intron | 45.0% | |
| GGTTACGTTGTCCAATAGGA+TGG | + | chr3.2:26517437-26517456 | None:intergenic | 45.0% | |
| GTCTTCAGTCTTGACCAACT+TGG | - | chr3.2:26515785-26515804 | MS.gene067528:intron | 45.0% | |
| GTTTGGGAGGGAGTGAAAAT+AGG | + | chr3.2:26515199-26515218 | None:intergenic | 45.0% | |
| TAGGTCCTCCAATCATCCAT+TGG | - | chr3.2:26517659-26517678 | MS.gene067528:CDS | 45.0% | |
| TATTGGTCATGGTGCGTTTG+AGG | - | chr3.2:26517399-26517418 | MS.gene067528:intron | 45.0% | |
| TGATAGTTGGGCCTAAGTCT+TGG | - | chr3.2:26517049-26517068 | MS.gene067528:intron | 45.0% | |
| TGCCGTGCAAACTTCATAGA+AGG | + | chr3.2:26516506-26516525 | None:intergenic | 45.0% | |
| TGGTTGCCCAATTGATTGGT+TGG | - | chr3.2:26517365-26517384 | MS.gene067528:intron | 45.0% | |
| ! | CCCACTCACACATTTTTCCT+TGG | + | chr3.2:26517149-26517168 | None:intergenic | 45.0% |
| ! | GCCCAATTGATTGGTTGGAT+TGG | - | chr3.2:26517370-26517389 | MS.gene067528:intron | 45.0% |
| ! | TGGTGGATAGTTGAGTGTAG+GGG | - | chr3.2:26515864-26515883 | MS.gene067528:intron | 45.0% |
| !! | CGCTCTTTTCTATGCTGCTT+TGG | - | chr3.2:26515282-26515301 | MS.gene067528:CDS | 45.0% |
| !! | GTGTTGGTTGCCCAATTGAT+TGG | - | chr3.2:26517361-26517380 | MS.gene067528:intron | 45.0% |
| !! | TGAGTGGGTCAGAGTTTTAG+TGG | - | chr3.2:26517161-26517180 | MS.gene067528:intron | 45.0% |
| !! | TAATTAAATAAGATAAAATT+TGG | + | chr3.2:26516678-26516697 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTAGTTATAATA+TGG | - | chr3.2:26516891-26516910 | MS.gene067528:intron | 5.0% |
| !!! | TTTTTTTTTAGTTATAATAT+GGG | - | chr3.2:26516892-26516911 | MS.gene067528:intron | 5.0% |
| CATTGAGTGGCTCAAGACCA+AGG | - | chr3.2:26517129-26517148 | MS.gene067528:intron | 50.0% | |
| GAAACGTGCACCAGCTCTAT+TGG | - | chr3.2:26517510-26517529 | MS.gene067528:CDS | 50.0% | |
| GCAAGGTTGTCCAATAGAGC+TGG | + | chr3.2:26517523-26517542 | None:intergenic | 50.0% | |
| GGAGGGAGTGAAAATAGGAG+GGG | + | chr3.2:26515194-26515213 | None:intergenic | 50.0% | |
| GGGAGGGAGTGAAAATAGGA+GGG | + | chr3.2:26515195-26515214 | None:intergenic | 50.0% | |
| TAGGTCAGCCTCTAGCCAAA+TGG | - | chr3.2:26515844-26515863 | MS.gene067528:intron | 50.0% | |
| TGGGAGGGAGTGAAAATAGG+AGG | + | chr3.2:26515196-26515215 | None:intergenic | 50.0% | |
| TGGGTGTTAGGGCTGCAATT+AGG | - | chr3.2:26517255-26517274 | MS.gene067528:intron | 50.0% | |
| ! | CACTCGGATTCGAACTTGCT+TGG | - | chr3.2:26515377-26515396 | MS.gene067528:intron | 50.0% |
| ! | CGGATTCGAACTTGCTTGGA+AGG | - | chr3.2:26515381-26515400 | MS.gene067528:intron | 50.0% |
| GTCAGCCTCTAGCCAAATGG+TGG | - | chr3.2:26515847-26515866 | MS.gene067528:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 26515061 | 26517778 | 26515061 | ID=MS.gene067528 |
| chr3.2 | mRNA | 26515061 | 26517778 | 26515061 | ID=MS.gene067528.t1;Parent=MS.gene067528 |
| chr3.2 | exon | 26517437 | 26517778 | 26517437 | ID=MS.gene067528.t1.exon1;Parent=MS.gene067528.t1 |
| chr3.2 | CDS | 26517437 | 26517778 | 26517437 | ID=cds.MS.gene067528.t1;Parent=MS.gene067528.t1 |
| chr3.2 | exon | 26515419 | 26515481 | 26515419 | ID=MS.gene067528.t1.exon2;Parent=MS.gene067528.t1 |
| chr3.2 | CDS | 26515419 | 26515481 | 26515419 | ID=cds.MS.gene067528.t1;Parent=MS.gene067528.t1 |
| chr3.2 | exon | 26515257 | 26515328 | 26515257 | ID=MS.gene067528.t1.exon3;Parent=MS.gene067528.t1 |
| chr3.2 | CDS | 26515257 | 26515328 | 26515257 | ID=cds.MS.gene067528.t1;Parent=MS.gene067528.t1 |
| chr3.2 | exon | 26515061 | 26515177 | 26515061 | ID=MS.gene067528.t1.exon4;Parent=MS.gene067528.t1 |
| chr3.2 | CDS | 26515061 | 26515177 | 26515061 | ID=cds.MS.gene067528.t1;Parent=MS.gene067528.t1 |
| Gene Sequence |
| Protein sequence |
