Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036277.t1 | XP_003612933.1 | 96.3 | 323 | 12 | 0 | 1 | 323 | 1 | 323 | 6.40E-178 | 633.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036277.t1 | Q38826 | 65.9 | 311 | 74 | 7 | 21 | 323 | 21 | 307 | 3.4e-103 | 376.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036277.t1 | G7KF56 | 96.3 | 323 | 12 | 0 | 1 | 323 | 1 | 323 | 4.6e-178 | 633.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene036277.t1 | TR | AUX/IAA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene68989 | MS.gene036277 | PPI |
MS.gene05894 | MS.gene036277 | PPI |
MS.gene015771 | MS.gene036277 | PPI |
MS.gene061505 | MS.gene036277 | PPI |
MS.gene04738 | MS.gene036277 | PPI |
MS.gene049100 | MS.gene036277 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036277.t1 | MTR_5g030710 | 96.285 | 323 | 12 | 0 | 1 | 323 | 1 | 323 | 0.0 | 651 |
MS.gene036277.t1 | MTR_8g067530 | 71.098 | 346 | 67 | 6 | 1 | 323 | 9 | 344 | 7.72e-173 | 483 |
MS.gene036277.t1 | MTR_5g067350 | 59.494 | 316 | 102 | 11 | 21 | 323 | 33 | 335 | 1.97e-112 | 330 |
MS.gene036277.t1 | MTR_2g101500 | 50.588 | 340 | 110 | 10 | 16 | 323 | 1 | 314 | 1.48e-99 | 296 |
MS.gene036277.t1 | MTR_6g488150 | 54.380 | 274 | 78 | 6 | 51 | 323 | 15 | 242 | 3.54e-90 | 270 |
MS.gene036277.t1 | MTR_8g103030 | 50.000 | 298 | 107 | 8 | 40 | 323 | 12 | 281 | 1.91e-87 | 264 |
MS.gene036277.t1 | MTR_5g067350 | 53.200 | 250 | 94 | 10 | 21 | 257 | 33 | 272 | 2.50e-66 | 209 |
MS.gene036277.t1 | MTR_1g080860 | 46.570 | 277 | 94 | 9 | 51 | 323 | 15 | 241 | 1.15e-64 | 204 |
MS.gene036277.t1 | MTR_1g080860 | 46.570 | 277 | 94 | 9 | 51 | 323 | 15 | 241 | 1.37e-64 | 204 |
MS.gene036277.t1 | MTR_1g093240 | 45.620 | 274 | 91 | 6 | 51 | 323 | 8 | 224 | 1.31e-63 | 201 |
MS.gene036277.t1 | MTR_1g093240 | 46.350 | 274 | 89 | 7 | 51 | 323 | 8 | 224 | 1.39e-63 | 201 |
MS.gene036277.t1 | MTR_1g070520 | 62.658 | 158 | 53 | 3 | 170 | 323 | 78 | 233 | 1.05e-61 | 197 |
MS.gene036277.t1 | MTR_7g096090 | 62.162 | 148 | 53 | 2 | 176 | 323 | 94 | 238 | 3.40e-60 | 193 |
MS.gene036277.t1 | MTR_1g070830 | 40.143 | 279 | 78 | 9 | 48 | 323 | 9 | 201 | 5.82e-52 | 170 |
MS.gene036277.t1 | MTR_1g093240 | 44.488 | 254 | 83 | 7 | 51 | 303 | 8 | 204 | 1.73e-51 | 169 |
MS.gene036277.t1 | MTR_1g076270 | 45.263 | 190 | 70 | 5 | 134 | 323 | 23 | 178 | 5.49e-48 | 159 |
MS.gene036277.t1 | MTR_1g093350 | 45.263 | 190 | 70 | 5 | 134 | 323 | 23 | 178 | 5.49e-48 | 159 |
MS.gene036277.t1 | MTR_6g488150 | 47.115 | 208 | 63 | 6 | 51 | 257 | 15 | 176 | 6.69e-48 | 159 |
MS.gene036277.t1 | MTR_1g040675 | 37.363 | 273 | 80 | 8 | 51 | 323 | 1 | 182 | 2.43e-46 | 155 |
MS.gene036277.t1 | MTR_1g040675 | 35.968 | 253 | 71 | 8 | 51 | 303 | 1 | 162 | 1.39e-36 | 129 |
MS.gene036277.t1 | MTR_1g069495 | 43.750 | 176 | 67 | 6 | 180 | 323 | 81 | 256 | 1.70e-34 | 127 |
MS.gene036277.t1 | MTR_4g011880 | 50.000 | 146 | 43 | 4 | 178 | 323 | 51 | 166 | 8.20e-34 | 122 |
MS.gene036277.t1 | MTR_8g014520 | 39.583 | 192 | 93 | 6 | 151 | 319 | 69 | 260 | 5.08e-33 | 123 |
MS.gene036277.t1 | MTR_8g014520 | 39.583 | 192 | 93 | 6 | 151 | 319 | 69 | 260 | 5.39e-33 | 123 |
MS.gene036277.t1 | MTR_2g100780 | 39.888 | 178 | 85 | 4 | 163 | 319 | 78 | 254 | 9.50e-32 | 120 |
MS.gene036277.t1 | MTR_2g100780 | 39.888 | 178 | 85 | 4 | 163 | 319 | 78 | 254 | 1.28e-31 | 119 |
MS.gene036277.t1 | MTR_2g102490 | 47.788 | 113 | 47 | 3 | 209 | 318 | 80 | 183 | 2.33e-29 | 111 |
MS.gene036277.t1 | MTR_4g124300 | 34.000 | 150 | 66 | 5 | 175 | 318 | 60 | 182 | 9.21e-20 | 85.5 |
MS.gene036277.t1 | MTR_3g106850 | 29.518 | 166 | 84 | 4 | 162 | 319 | 69 | 209 | 5.66e-19 | 84.3 |
MS.gene036277.t1 | MTR_1g085750 | 41.818 | 110 | 49 | 3 | 214 | 323 | 82 | 176 | 9.62e-18 | 79.7 |
MS.gene036277.t1 | MTR_7g110790 | 41.176 | 102 | 46 | 2 | 215 | 316 | 68 | 155 | 1.10e-16 | 76.6 |
MS.gene036277.t1 | MTR_4g115075 | 28.105 | 153 | 84 | 3 | 166 | 316 | 77 | 205 | 3.23e-14 | 70.9 |
MS.gene036277.t1 | MTR_1g109510 | 28.302 | 159 | 87 | 5 | 159 | 316 | 36 | 168 | 1.39e-12 | 65.5 |
MS.gene036277.t1 | MTR_1g085750 | 41.111 | 90 | 39 | 2 | 214 | 303 | 82 | 157 | 4.31e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036277.t1 | AT2G22670 | 67.203 | 311 | 70 | 9 | 21 | 323 | 21 | 307 | 9.18e-135 | 385 |
MS.gene036277.t1 | AT2G22670 | 67.203 | 311 | 70 | 9 | 21 | 323 | 21 | 307 | 9.18e-135 | 385 |
MS.gene036277.t1 | AT2G22670 | 67.203 | 311 | 70 | 9 | 21 | 323 | 21 | 307 | 1.05e-134 | 385 |
MS.gene036277.t1 | AT2G22670 | 67.203 | 311 | 70 | 9 | 21 | 323 | 21 | 307 | 1.05e-134 | 385 |
MS.gene036277.t1 | AT2G22670 | 67.203 | 311 | 70 | 9 | 21 | 323 | 38 | 324 | 1.57e-134 | 385 |
MS.gene036277.t1 | AT5G65670 | 59.177 | 316 | 108 | 6 | 13 | 323 | 25 | 324 | 6.39e-124 | 358 |
MS.gene036277.t1 | AT5G65670 | 59.177 | 316 | 108 | 6 | 13 | 323 | 25 | 324 | 7.77e-124 | 358 |
MS.gene036277.t1 | AT4G29080 | 47.678 | 323 | 122 | 8 | 16 | 323 | 3 | 293 | 1.74e-87 | 265 |
MS.gene036277.t1 | AT4G14550 | 45.421 | 273 | 92 | 5 | 51 | 323 | 1 | 216 | 5.84e-68 | 212 |
MS.gene036277.t1 | AT4G14550 | 46.154 | 273 | 90 | 6 | 51 | 323 | 1 | 216 | 7.96e-68 | 212 |
MS.gene036277.t1 | AT3G04730 | 42.509 | 287 | 87 | 6 | 51 | 323 | 2 | 224 | 1.75e-63 | 201 |
MS.gene036277.t1 | AT1G04250 | 43.321 | 277 | 91 | 8 | 49 | 323 | 5 | 217 | 7.46e-63 | 199 |
MS.gene036277.t1 | AT3G23050 | 43.310 | 284 | 91 | 8 | 51 | 323 | 6 | 230 | 1.31e-61 | 196 |
MS.gene036277.t1 | AT4G14550 | 43.651 | 252 | 85 | 5 | 51 | 302 | 1 | 195 | 3.33e-55 | 178 |
MS.gene036277.t1 | AT3G23050 | 41.667 | 264 | 84 | 8 | 51 | 303 | 6 | 210 | 7.06e-49 | 162 |
MS.gene036277.t1 | AT1G04240 | 55.034 | 149 | 46 | 4 | 175 | 323 | 58 | 185 | 2.14e-47 | 158 |
MS.gene036277.t1 | AT1G04240 | 55.034 | 149 | 46 | 4 | 175 | 323 | 158 | 285 | 1.36e-46 | 159 |
MS.gene036277.t1 | AT5G43700 | 50.336 | 149 | 51 | 4 | 175 | 323 | 56 | 181 | 1.39e-42 | 145 |
MS.gene036277.t1 | AT3G23030 | 51.007 | 149 | 41 | 3 | 175 | 323 | 54 | 170 | 5.94e-41 | 141 |
MS.gene036277.t1 | AT3G23030 | 51.007 | 149 | 41 | 3 | 175 | 323 | 141 | 257 | 2.51e-40 | 142 |
MS.gene036277.t1 | AT4G28640 | 43.750 | 176 | 72 | 4 | 166 | 322 | 73 | 240 | 5.57e-37 | 133 |
MS.gene036277.t1 | AT4G28640 | 43.750 | 176 | 72 | 4 | 166 | 322 | 73 | 240 | 6.24e-37 | 133 |
MS.gene036277.t1 | AT2G33310 | 44.134 | 179 | 71 | 4 | 166 | 323 | 60 | 230 | 7.33e-37 | 132 |
MS.gene036277.t1 | AT2G33310 | 44.134 | 179 | 71 | 4 | 166 | 323 | 60 | 230 | 7.33e-37 | 132 |
MS.gene036277.t1 | AT1G15580 | 44.828 | 145 | 49 | 2 | 174 | 318 | 46 | 159 | 1.56e-36 | 129 |
MS.gene036277.t1 | AT4G28640 | 44.767 | 172 | 76 | 4 | 166 | 322 | 73 | 240 | 4.20e-36 | 132 |
MS.gene036277.t1 | AT1G52830 | 43.919 | 148 | 55 | 4 | 176 | 323 | 65 | 184 | 6.68e-36 | 128 |
MS.gene036277.t1 | AT2G33310 | 44.444 | 180 | 70 | 5 | 166 | 323 | 60 | 231 | 6.98e-36 | 130 |
MS.gene036277.t1 | AT1G04550 | 42.458 | 179 | 73 | 4 | 166 | 323 | 54 | 223 | 7.97e-35 | 127 |
MS.gene036277.t1 | AT3G15540 | 45.342 | 161 | 62 | 4 | 164 | 323 | 53 | 188 | 1.01e-34 | 125 |
MS.gene036277.t1 | AT4G14560 | 48.276 | 145 | 45 | 3 | 176 | 320 | 50 | 164 | 5.70e-34 | 122 |
MS.gene036277.t1 | AT4G14550 | 40.580 | 207 | 66 | 5 | 51 | 256 | 1 | 151 | 3.48e-33 | 121 |
MS.gene036277.t1 | AT3G16500 | 40.523 | 153 | 72 | 3 | 182 | 319 | 104 | 252 | 1.69e-30 | 116 |
MS.gene036277.t1 | AT3G16500 | 40.523 | 153 | 72 | 3 | 182 | 319 | 104 | 252 | 1.95e-30 | 116 |
MS.gene036277.t1 | AT1G04100 | 38.922 | 167 | 74 | 4 | 183 | 323 | 95 | 259 | 6.08e-30 | 115 |
MS.gene036277.t1 | AT1G51950 | 38.608 | 158 | 73 | 4 | 182 | 319 | 97 | 250 | 1.53e-27 | 108 |
MS.gene036277.t1 | AT3G23050 | 36.866 | 217 | 69 | 7 | 51 | 256 | 6 | 165 | 1.07e-26 | 103 |
MS.gene036277.t1 | AT5G25890 | 39.583 | 144 | 64 | 3 | 180 | 323 | 47 | 167 | 2.37e-26 | 103 |
MS.gene036277.t1 | AT3G17600 | 36.774 | 155 | 68 | 6 | 164 | 316 | 28 | 154 | 4.96e-24 | 96.3 |
MS.gene036277.t1 | AT3G62100 | 43.137 | 102 | 43 | 2 | 215 | 316 | 82 | 168 | 5.96e-20 | 85.9 |
MS.gene036277.t1 | AT2G46990 | 40.385 | 104 | 47 | 1 | 215 | 318 | 84 | 172 | 2.36e-19 | 84.3 |
MS.gene036277.t1 | AT3G62100 | 41.573 | 89 | 37 | 2 | 215 | 303 | 82 | 155 | 2.49e-14 | 70.1 |
MS.gene036277.t1 | AT2G46990 | 38.202 | 89 | 40 | 1 | 215 | 303 | 84 | 157 | 1.81e-13 | 67.8 |
MS.gene036277.t1 | AT1G15050 | 37.143 | 105 | 50 | 1 | 217 | 321 | 62 | 150 | 4.65e-13 | 66.2 |
MS.gene036277.t1 | AT1G15050 | 37.143 | 105 | 50 | 1 | 217 | 321 | 94 | 182 | 9.84e-13 | 66.2 |
MS.gene036277.t1 | AT4G32280 | 29.703 | 101 | 51 | 2 | 216 | 316 | 118 | 198 | 4.05e-12 | 65.1 |
MS.gene036277.t1 | AT4G32280 | 25.000 | 168 | 75 | 4 | 180 | 316 | 93 | 240 | 4.88e-12 | 65.5 |
MS.gene036277.t1 | AT1G04550 | 36.842 | 114 | 51 | 3 | 166 | 258 | 54 | 167 | 7.42e-12 | 63.5 |
MS.gene036277.t1 | AT2G01200 | 33.333 | 126 | 64 | 2 | 196 | 321 | 83 | 188 | 7.62e-12 | 63.9 |
MS.gene036277.t1 | AT2G01200 | 33.333 | 126 | 64 | 2 | 196 | 321 | 83 | 188 | 7.62e-12 | 63.9 |
Find 98 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTTCATCATTGTTGTTCT+TGG | 0.148811 | 5.1:+20948696 | None:intergenic |
TTGCAGAAGAATGTGGTTTC+GGG | 0.253040 | 5.1:-20949235 | MS.gene036277:CDS |
GGTAAGTTTAATGCTAATTC+AGG | 0.253741 | 5.1:-20949080 | MS.gene036277:CDS |
TAGATCTACCTTCCTTAGAT+AGG | 0.286933 | 5.1:+20948618 | None:intergenic |
TTTGCAGAAGAATGTGGTTT+CGG | 0.361512 | 5.1:-20949236 | MS.gene036277:CDS |
GAGTTGAGGTTGGGTCTTCC+CGG | 0.364318 | 5.1:-20949352 | MS.gene036277:CDS |
GGCCTCCTATAAGATCATTT+AGG | 0.368510 | 5.1:-20948741 | MS.gene036277:CDS |
GGTTCTGACGCCATTGGGTT+AGG | 0.402217 | 5.1:-20946071 | None:intergenic |
TGGATGGTGCTCCCTATCTA+AGG | 0.406442 | 5.1:-20948630 | MS.gene036277:CDS |
GATGGAGACTGGATGCTTGT+AGG | 0.411867 | 5.1:-20948314 | MS.gene036277:CDS |
AAAAGTGAACTTGAATTTGA+AGG | 0.413246 | 5.1:-20949380 | MS.gene036277:CDS |
AAGGCTACTGAGTTGAGGTT+GGG | 0.419598 | 5.1:-20949361 | MS.gene036277:CDS |
GGATTTGCTGATACCGTTGA+TGG | 0.420125 | 5.1:-20949202 | MS.gene036277:CDS |
TCAATCACCCGAGAGGGAAA+TGG | 0.422310 | 5.1:-20949326 | MS.gene036277:CDS |
GTCTCCGACGGCGGTGGCTA+CGG | 0.424136 | 5.1:-20949518 | MS.gene036277:CDS |
GACGATGGAACGGAATTACT+TGG | 0.426582 | 5.1:-20949467 | MS.gene036277:CDS |
CCTTTACTTCCTGCAAAAGA+TGG | 0.428383 | 5.1:-20949259 | MS.gene036277:CDS |
ATGGAGACTGGATGCTTGTA+GGG | 0.429252 | 5.1:-20948313 | MS.gene036277:CDS |
AGGAACTACTGGTCATAATC+AGG | 0.436346 | 5.1:-20948958 | MS.gene036277:CDS |
CTCTCGGGTGATTGAGATCC+GGG | 0.441176 | 5.1:+20949334 | None:intergenic |
TGAAGGGTTCTGACGCCATT+GGG | 0.446469 | 5.1:-20946076 | MS.gene036277:CDS |
ATTGTTGTTCTTGGAAGCAT+TGG | 0.451257 | 5.1:+20948705 | None:intergenic |
ATCCGAATCCATTTCCCTCT+CGG | 0.452945 | 5.1:+20949318 | None:intergenic |
TCCGAATCCATTTCCCTCTC+GGG | 0.455237 | 5.1:+20949319 | None:intergenic |
ACCCGAGAGGGAAATGGATT+CGG | 0.455743 | 5.1:-20949320 | MS.gene036277:CDS |
CCTCTCGGGTGATTGAGATC+CGG | 0.459016 | 5.1:+20949333 | None:intergenic |
TGTGGTTCCCATGGAGCTCC+AGG | 0.460461 | 5.1:-20948413 | MS.gene036277:CDS |
CTTTCCTGCAAAACCTTACT+CGG | 0.461106 | 5.1:+20948996 | None:intergenic |
GCCTAGACCTGGTGGAGCTC+AGG | 0.463855 | 5.1:-20949039 | MS.gene036277:CDS |
GCAGGTGCTGCTTCTATCGC+TGG | 0.467925 | 5.1:-20948936 | MS.gene036277:CDS |
CAGAAGGCTGAAAATAATGA+AGG | 0.471961 | 5.1:-20946093 | MS.gene036277:CDS |
ATGAAGGGTTCTGACGCCAT+TGG | 0.475878 | 5.1:-20946077 | MS.gene036277:CDS |
GCCTGAGCTCCACCAGGTCT+AGG | 0.476166 | 5.1:+20949038 | None:intergenic |
GAAGGCTACTGAGTTGAGGT+TGG | 0.492437 | 5.1:-20949362 | MS.gene036277:CDS |
GTAAGTTTAATGCTAATTCA+GGG | 0.493399 | 5.1:-20949079 | MS.gene036277:CDS |
AGATCTACCTTCCTTAGATA+GGG | 0.496829 | 5.1:+20948619 | None:intergenic |
GACGGCGGTGGCTACGGAGG+AGG | 0.499617 | 5.1:-20949512 | MS.gene036277:CDS |
AGTGAAAGAAATGCCGAGTA+AGG | 0.502631 | 5.1:-20949009 | MS.gene036277:CDS |
ACAAAGAGTGCAGTGGGACC+TGG | 0.505055 | 5.1:+20948664 | None:intergenic |
GTGGTTTCGGGGAATAAGAG+AGG | 0.508267 | 5.1:-20949223 | MS.gene036277:CDS |
TTCCTAAATGATCTTATAGG+AGG | 0.509027 | 5.1:+20948739 | None:intergenic |
GCAGGCCAGTGTGGTTCCCA+TGG | 0.511832 | 5.1:-20948422 | MS.gene036277:intron |
CATATTCTGAACCATGCAAA+AGG | 0.516368 | 5.1:+20948357 | None:intergenic |
TGCTTGTAGGGGACGTACCA+TGG | 0.519764 | 5.1:-20948301 | MS.gene036277:CDS |
TTCTATCGCTGGTTGTGCAC+CGG | 0.524204 | 5.1:-20948925 | MS.gene036277:CDS |
TGTGACAGGGCACAAGTTGT+TGG | 0.524224 | 5.1:-20948766 | MS.gene036277:intron |
CAAGAACAACAATGATGAAG+TGG | 0.532840 | 5.1:-20948695 | MS.gene036277:CDS |
CTCACTTATGAAGATAAAGA+TGG | 0.536028 | 5.1:-20948332 | MS.gene036277:CDS |
ACCTTCACAAAGAGTGCAGT+GGG | 0.538673 | 5.1:+20948658 | None:intergenic |
GGAAATGTCTCCGACGGCGG+TGG | 0.539855 | 5.1:-20949524 | None:intergenic |
GCGGTGGCTACGGAGGAGGA+AGG | 0.542724 | 5.1:-20949508 | MS.gene036277:CDS |
ATGAAGATAAAGATGGAGAC+TGG | 0.547731 | 5.1:-20948325 | MS.gene036277:CDS |
GGGATTGTCTGATTGTTCAT+CGG | 0.548946 | 5.1:-20949446 | MS.gene036277:CDS |
AACAGCTGAACATCTTCTCA+AGG | 0.549658 | 5.1:+20948560 | None:intergenic |
GAGCTCCATGGGAACCACAC+TGG | 0.553553 | 5.1:+20948417 | None:intergenic |
GATGAAGTGGATGGAAAACC+AGG | 0.553790 | 5.1:-20948682 | MS.gene036277:CDS |
TGTGCAGCTAGAGGAACTAC+TGG | 0.555927 | 5.1:-20948969 | MS.gene036277:CDS |
GTGCTCGCCTGAGCTCCACC+AGG | 0.561039 | 5.1:+20949032 | None:intergenic |
GCTTGTAGGGGACGTACCAT+GGG | 0.563761 | 5.1:-20948300 | MS.gene036277:CDS |
GATTTGCTGATACCGTTGAT+GGG | 0.566751 | 5.1:-20949201 | MS.gene036277:CDS |
TTTGTGAAGGTCAGCATGGA+TGG | 0.570866 | 5.1:-20948646 | MS.gene036277:CDS |
GCAGGAAGTAAAGGGAACAA+TGG | 0.573981 | 5.1:+20949268 | None:intergenic |
ACAGGGCACAAGTTGTTGGT+TGG | 0.575157 | 5.1:-20948762 | MS.gene036277:intron |
AGATGGTTTGCAGAAGAATG+TGG | 0.577585 | 5.1:-20949242 | MS.gene036277:CDS |
GCGCAAACTGTCGTCGACGA+TGG | 0.579580 | 5.1:-20949482 | MS.gene036277:CDS |
TAAAGAACATCTTACTCCCA+TGG | 0.581718 | 5.1:+20948284 | None:intergenic |
TCCTCCGTAGCCACCGCCGT+CGG | 0.586598 | 5.1:+20949514 | None:intergenic |
CGGTGGCTACGGAGGAGGAA+GGG | 0.593859 | 5.1:-20949507 | MS.gene036277:CDS |
ACTACTGGTCATAATCAGGC+AGG | 0.595833 | 5.1:-20948954 | MS.gene036277:CDS |
ACGATGGAACGGAATTACTT+GGG | 0.597669 | 5.1:-20949466 | MS.gene036277:CDS |
CGGATCTCAATCACCCGAGA+GGG | 0.597943 | 5.1:-20949332 | MS.gene036277:CDS |
AACTGTCGTCGACGATGGAA+CGG | 0.600872 | 5.1:-20949477 | MS.gene036277:CDS |
TCCCACTGCACTCTTTGTGA+AGG | 0.601153 | 5.1:-20948659 | MS.gene036277:CDS |
AACAACAATGATGAAGTGGA+TGG | 0.601893 | 5.1:-20948691 | MS.gene036277:CDS |
TAGGGAAATGTCTCCGACGG+CGG | 0.603529 | 5.1:-20949527 | None:intergenic |
TCCGACGGCGGTGGCTACGG+AGG | 0.612859 | 5.1:-20949515 | MS.gene036277:CDS |
TGATGAGTGAGAGCAAGCTG+AGG | 0.616205 | 5.1:-20948382 | MS.gene036277:CDS |
ATGCTATCGCCTAGACCTGG+TGG | 0.616679 | 5.1:-20949047 | MS.gene036277:CDS |
ATTGTCTGATTGTTCATCGG+TGG | 0.617997 | 5.1:-20949443 | MS.gene036277:CDS |
TGCAGAAGAATGTGGTTTCG+GGG | 0.623774 | 5.1:-20949234 | MS.gene036277:CDS |
GTGATGCTATCGCCTAGACC+TGG | 0.627514 | 5.1:-20949050 | MS.gene036277:CDS |
TGGTGCTCCCTATCTAAGGA+AGG | 0.627651 | 5.1:-20948626 | MS.gene036277:CDS |
GATGAGTGAGAGCAAGCTGA+GGG | 0.627937 | 5.1:-20948381 | MS.gene036277:CDS |
TGGCTACGGAGGAGGAAGGG+CGG | 0.628102 | 5.1:-20949504 | MS.gene036277:CDS |
GAAAGGCCTTGTGCAGCTAG+AGG | 0.628138 | 5.1:-20948978 | MS.gene036277:CDS |
AGAAGGCTGAAAATAATGAA+GGG | 0.637227 | 5.1:-20946092 | MS.gene036277:CDS |
TGTTCATTGATACTTGCAGA+AGG | 0.637954 | 5.1:-20946109 | MS.gene036277:CDS |
ATTTGAAGGCTACTGAGTTG+AGG | 0.639042 | 5.1:-20949366 | MS.gene036277:CDS |
GACCTTCACAAAGAGTGCAG+TGG | 0.642687 | 5.1:+20948657 | None:intergenic |
CACCTGCGAAAACCCATCAA+CGG | 0.645296 | 5.1:+20949189 | None:intergenic |
TGTGTAATGGCAGGCCAGTG+TGG | 0.646395 | 5.1:-20948431 | MS.gene036277:intron |
GGTTAGGGAAATGTCTCCGA+CGG | 0.647341 | 5.1:-20949530 | None:intergenic |
ACAGCTGAACATCTTCTCAA+GGG | 0.651538 | 5.1:+20948561 | None:intergenic |
TGGAGACTGGATGCTTGTAG+GGG | 0.651918 | 5.1:-20948312 | MS.gene036277:CDS |
GTAGTTCCTCTAGCTGCACA+AGG | 0.655154 | 5.1:+20948972 | None:intergenic |
ACTCTTTGTGAAGGTCAGCA+TGG | 0.660309 | 5.1:-20948650 | MS.gene036277:CDS |
AGAACACATACCTAACCCAA+TGG | 0.669918 | 5.1:+20946061 | None:intergenic |
CCGGATCTCAATCACCCGAG+AGG | 0.692711 | 5.1:-20949333 | MS.gene036277:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTTTTAATCGAAAATTA+GGG | - | chr5.1:20948337-20948356 | MS.gene036277:CDS | 10.0% |
!! | ACAAATTAAGAAATACAAAA+AGG | - | chr5.1:20947586-20947605 | MS.gene036277:intron | 15.0% |
!! | ATCTTATATACAAATATTGT+TGG | - | chr5.1:20947959-20947978 | MS.gene036277:intron | 15.0% |
!! | TCTTATATACAAATATTGTT+GGG | - | chr5.1:20947960-20947979 | MS.gene036277:intron | 15.0% |
!!! | AATTTTTAATCGAAAATTAG+GGG | - | chr5.1:20948338-20948357 | MS.gene036277:CDS | 15.0% |
!!! | GTAATTTTTAATCGAAAATT+AGG | - | chr5.1:20948336-20948355 | MS.gene036277:CDS | 15.0% |
!!! | TATTATAGTTCTGTAATTTA+CGG | - | chr5.1:20949332-20949351 | MS.gene036277:CDS | 15.0% |
!!! | TATTTTTTTTGAAGAAATTC+AGG | - | chr5.1:20949040-20949059 | MS.gene036277:CDS | 15.0% |
!! | ATATGAAAATTTACCATATC+AGG | + | chr5.1:20946807-20946826 | None:intergenic | 20.0% |
!!! | AATAACTTTGCTTTCTAAAA+AGG | + | chr5.1:20948524-20948543 | None:intergenic | 20.0% |
!!! | ATAACTTTGCTTTCTAAAAA+GGG | + | chr5.1:20948523-20948542 | None:intergenic | 20.0% |
!!! | ATTATAGTTCTGTAATTTAC+GGG | - | chr5.1:20949333-20949352 | MS.gene036277:CDS | 20.0% |
!!! | ATTTTTAATCGAAAATTAGG+GGG | - | chr5.1:20948339-20948358 | MS.gene036277:CDS | 20.0% |
!!! | GTAATATATTCTACTTTTGT+AGG | + | chr5.1:20947668-20947687 | None:intergenic | 20.0% |
!!! | TATTTTTGTTCTGAAATCTT+TGG | - | chr5.1:20947134-20947153 | MS.gene036277:intron | 20.0% |
!!! | TGTATTTCTTAATTTGTATG+CGG | + | chr5.1:20947583-20947602 | None:intergenic | 20.0% |
!!! | TTTACAATATTTGTTATGCA+GGG | - | chr5.1:20946491-20946510 | MS.gene036277:intron | 20.0% |
!!! | TTTTTCCTAAATGATCTTAT+AGG | + | chr5.1:20946859-20946878 | None:intergenic | 20.0% |
! | AAAAGTGAACTTGAATTTGA+AGG | - | chr5.1:20946212-20946231 | MS.gene036277:intron | 25.0% |
! | AAACACACCAATAGTTATTA+GGG | + | chr5.1:20947645-20947664 | None:intergenic | 25.0% |
! | AAACGACACTCATTTATAAA+CGG | + | chr5.1:20947553-20947572 | None:intergenic | 25.0% |
! | AAATACTACCTAACATTCAA+GGG | - | chr5.1:20948158-20948177 | MS.gene036277:intron | 25.0% |
! | AAATTTACCATATCAGGATT+AGG | + | chr5.1:20946801-20946820 | None:intergenic | 25.0% |
! | ATTGGCAAATTAGTATGAAT+GGG | - | chr5.1:20948808-20948827 | MS.gene036277:intron | 25.0% |
! | GTAAGATGTTCTTTAAATTC+TGG | - | chr5.1:20947316-20947335 | MS.gene036277:intron | 25.0% |
! | GTAAGTTTAATGCTAATTCA+GGG | - | chr5.1:20946513-20946532 | MS.gene036277:intron | 25.0% |
! | GTATCTTAAAACCAAGAAAA+TGG | - | chr5.1:20949394-20949413 | MS.gene036277:CDS | 25.0% |
! | TTACAGAACTATAATACTAG+AGG | + | chr5.1:20949328-20949347 | None:intergenic | 25.0% |
!! | ACTGTAAATCCATTTAAGAT+GGG | + | chr5.1:20948991-20949010 | None:intergenic | 25.0% |
!! | GTAAATTTTCATATGTGACA+GGG | - | chr5.1:20946813-20946832 | MS.gene036277:intron | 25.0% |
!! | TAAACTAATGCATTTGAGTT+GGG | - | chr5.1:20948729-20948748 | MS.gene036277:CDS | 25.0% |
!!! | AATGTATGTTCACTTTTCAA+TGG | + | chr5.1:20947742-20947761 | None:intergenic | 25.0% |
!!! | GTTTACAATATTTGTTATGC+AGG | - | chr5.1:20946490-20946509 | MS.gene036277:intron | 25.0% |
!!! | GTTTTGTTTTAGTGGTTTAA+TGG | - | chr5.1:20946466-20946485 | MS.gene036277:intron | 25.0% |
!!! | TTATAAATGAGTGTCGTTTA+AGG | - | chr5.1:20947554-20947573 | MS.gene036277:intron | 25.0% |
!!! | TTGATATTTTTTCAAGCAAG+TGG | + | chr5.1:20948491-20948510 | None:intergenic | 25.0% |
AAACTACCCCTAATAACTAT+TGG | - | chr5.1:20947635-20947654 | MS.gene036277:intron | 30.0% | |
AACACACCAATAGTTATTAG+GGG | + | chr5.1:20947644-20947663 | None:intergenic | 30.0% | |
AATAAGTCAACCCAGAAATA+TGG | + | chr5.1:20947896-20947915 | None:intergenic | 30.0% | |
ACCAATTGATCCATATTTCT+GGG | - | chr5.1:20947883-20947902 | MS.gene036277:intron | 30.0% | |
AGAAGGCTGAAAATAATGAA+GGG | - | chr5.1:20949500-20949519 | MS.gene036277:CDS | 30.0% | |
AGAGATTGTCGTAATGTATA+TGG | - | chr5.1:20947819-20947838 | MS.gene036277:intron | 30.0% | |
AGATGTGATACCAAGTATAA+TGG | - | chr5.1:20948432-20948451 | MS.gene036277:intron | 30.0% | |
ATAGTTAGAATATGGGGATT+TGG | - | chr5.1:20948877-20948896 | MS.gene036277:intron | 30.0% | |
ATAGTTATTAGGGGTAGTTT+AGG | + | chr5.1:20947635-20947654 | None:intergenic | 30.0% | |
ATCATTTAGGAAAAACTCGA+TGG | - | chr5.1:20946864-20946883 | MS.gene036277:intron | 30.0% | |
CAAATACTACCTAACATTCA+AGG | - | chr5.1:20948157-20948176 | MS.gene036277:intron | 30.0% | |
CAATTTCCATGTATACTCAT+AGG | - | chr5.1:20948009-20948028 | MS.gene036277:intron | 30.0% | |
CACTGTAAATCCATTTAAGA+TGG | + | chr5.1:20948992-20949011 | None:intergenic | 30.0% | |
CATGCAATATCCATTATACT+TGG | + | chr5.1:20948445-20948464 | None:intergenic | 30.0% | |
CATTGGCAAATTAGTATGAA+TGG | - | chr5.1:20948807-20948826 | MS.gene036277:intron | 30.0% | |
CTAAACTAATGCATTTGAGT+TGG | - | chr5.1:20948728-20948747 | MS.gene036277:CDS | 30.0% | |
CTATGAGTATACATGGAAAT+TGG | + | chr5.1:20948011-20948030 | None:intergenic | 30.0% | |
CTCACTTATGAAGATAAAGA+TGG | - | chr5.1:20947260-20947279 | MS.gene036277:intron | 30.0% | |
CTGAACAAACATGTATGATT+TGG | - | chr5.1:20946755-20946774 | MS.gene036277:intron | 30.0% | |
CTTTGATTAAAATTCGCATG+CGG | - | chr5.1:20949192-20949211 | MS.gene036277:CDS | 30.0% | |
GAAACACACCAATAGTTATT+AGG | + | chr5.1:20947646-20947665 | None:intergenic | 30.0% | |
GGTAAGTTTAATGCTAATTC+AGG | - | chr5.1:20946512-20946531 | MS.gene036277:intron | 30.0% | |
TAGATATCCTAATCCTGATA+TGG | - | chr5.1:20946791-20946810 | MS.gene036277:intron | 30.0% | |
TCAACATACTCTCTTTGATT+GGG | + | chr5.1:20949272-20949291 | None:intergenic | 30.0% | |
TCATTCGTCAAATTAAGAGA+TGG | - | chr5.1:20948270-20948289 | MS.gene036277:intron | 30.0% | |
TGTACACAACATTCATTTGA+GGG | - | chr5.1:20947699-20947718 | MS.gene036277:intron | 30.0% | |
TTATCTGCTTCATAACACAT+TGG | - | chr5.1:20948776-20948795 | MS.gene036277:intron | 30.0% | |
TTCAACATACTCTCTTTGAT+TGG | + | chr5.1:20949273-20949292 | None:intergenic | 30.0% | |
TTCCTAAATGATCTTATAGG+AGG | + | chr5.1:20946856-20946875 | None:intergenic | 30.0% | |
TTGGCAAATTAGTATGAATG+GGG | - | chr5.1:20948809-20948828 | MS.gene036277:intron | 30.0% | |
! | ATTCATTCAGTCCATTTTCT+TGG | + | chr5.1:20949408-20949427 | None:intergenic | 30.0% |
! | ATTTAAGATGGGAGAAACAA+AGG | + | chr5.1:20948980-20948999 | None:intergenic | 30.0% |
! | GATTTTACTTACTTAGATGC+CGG | + | chr5.1:20946689-20946708 | None:intergenic | 30.0% |
! | GGTAAATTTTCATATGTGAC+AGG | - | chr5.1:20946812-20946831 | MS.gene036277:intron | 30.0% |
! | TTCATAACACATTGGCTATA+TGG | - | chr5.1:20948784-20948803 | MS.gene036277:intron | 30.0% |
! | TTTGATGAAGTTGGTTTATG+CGG | - | chr5.1:20946431-20946450 | MS.gene036277:intron | 30.0% |
! | TTTGTTTCTCCCATCTTAAA+TGG | - | chr5.1:20948979-20948998 | MS.gene036277:CDS | 30.0% |
! | TTTTCTCATCACACAAACTT+GGG | + | chr5.1:20946194-20946213 | None:intergenic | 30.0% |
! | TTTTTCTCATCACACAAACT+TGG | + | chr5.1:20946195-20946214 | None:intergenic | 30.0% |
!! | ATATGGATCAATTGGTCTTT+CGG | + | chr5.1:20947879-20947898 | None:intergenic | 30.0% |
!!! | AAGTGCATGTTTTGTTTTAG+TGG | - | chr5.1:20946458-20946477 | MS.gene036277:intron | 30.0% |
AAAAGACAGGAAGAAACCTA+AGG | + | chr5.1:20948574-20948593 | None:intergenic | 35.0% | |
AAATTAGTATGAATGGGGTG+CGG | - | chr5.1:20948814-20948833 | MS.gene036277:intron | 35.0% | |
AACAACAATGATGAAGTGGA+TGG | - | chr5.1:20946901-20946920 | MS.gene036277:intron | 35.0% | |
AACAAGAACCCTTGAATGTT+AGG | + | chr5.1:20948169-20948188 | None:intergenic | 35.0% | |
AATCTTTGGCGATTGTGTAA+TGG | - | chr5.1:20947148-20947167 | MS.gene036277:intron | 35.0% | |
AATGAGCTGAAGTTTCTTAG+AGG | + | chr5.1:20948926-20948945 | None:intergenic | 35.0% | |
ACCCAGAAATATGGATCAAT+TGG | + | chr5.1:20947887-20947906 | None:intergenic | 35.0% | |
ACTTGATGAAAATGTGAGGA+GGG | - | chr5.1:20948853-20948872 | MS.gene036277:intron | 35.0% | |
AGATCTACCTTCCTTAGATA+GGG | + | chr5.1:20946976-20946995 | None:intergenic | 35.0% | |
AGGAATTGCAATTTAGTGAG+TGG | + | chr5.1:20949448-20949467 | None:intergenic | 35.0% | |
AGGAGGGAATAGTTAGAATA+TGG | - | chr5.1:20948869-20948888 | MS.gene036277:intron | 35.0% | |
ATGAAGATAAAGATGGAGAC+TGG | - | chr5.1:20947267-20947286 | MS.gene036277:intron | 35.0% | |
ATGAGCTGAAGTTTCTTAGA+GGG | + | chr5.1:20948925-20948944 | None:intergenic | 35.0% | |
ATTAGGGGTAGTTTAGGAAA+AGG | + | chr5.1:20947629-20947648 | None:intergenic | 35.0% | |
ATTTACGGGCTTGTCTATTT+AGG | - | chr5.1:20949347-20949366 | MS.gene036277:CDS | 35.0% | |
CAAGAACAACAATGATGAAG+TGG | - | chr5.1:20946897-20946916 | MS.gene036277:intron | 35.0% | |
CAGAAGGCTGAAAATAATGA+AGG | - | chr5.1:20949499-20949518 | MS.gene036277:CDS | 35.0% | |
CATATTCTGAACCATGCAAA+AGG | + | chr5.1:20947238-20947257 | None:intergenic | 35.0% | |
CATGATCAAATTCTTCAGTC+TGG | + | chr5.1:20949110-20949129 | None:intergenic | 35.0% | |
GACACTCATTTATAAACGGA+AGG | + | chr5.1:20947549-20947568 | None:intergenic | 35.0% | |
GACCAATTGATCCATATTTC+TGG | - | chr5.1:20947882-20947901 | MS.gene036277:intron | 35.0% | |
GAGGGAATAGTTAGAATATG+GGG | - | chr5.1:20948871-20948890 | MS.gene036277:intron | 35.0% | |
GGAATTGCAATTTAGTGAGT+GGG | + | chr5.1:20949447-20949466 | None:intergenic | 35.0% | |
GGAGGGAATAGTTAGAATAT+GGG | - | chr5.1:20948870-20948889 | MS.gene036277:intron | 35.0% | |
GTGTACACAACATTCATTTG+AGG | - | chr5.1:20947698-20947717 | MS.gene036277:intron | 35.0% | |
TAAAGAACATCTTACTCCCA+TGG | + | chr5.1:20947311-20947330 | None:intergenic | 35.0% | |
TACTTGATGAAAATGTGAGG+AGG | - | chr5.1:20948852-20948871 | MS.gene036277:intron | 35.0% | |
TAGATCTACCTTCCTTAGAT+AGG | + | chr5.1:20946977-20946996 | None:intergenic | 35.0% | |
TCTATCAACTCAACTACTCA+AGG | - | chr5.1:20946707-20946726 | MS.gene036277:intron | 35.0% | |
TGAAGAATTTGATCATGACC+AGG | - | chr5.1:20949113-20949132 | MS.gene036277:intron | 35.0% | |
TGGACTGAATGAATGACATA+AGG | - | chr5.1:20949414-20949433 | MS.gene036277:CDS | 35.0% | |
TGTTCATTGATACTTGCAGA+AGG | - | chr5.1:20949483-20949502 | MS.gene036277:CDS | 35.0% | |
TTAGGGGTAGTTTAGGAAAA+GGG | + | chr5.1:20947628-20947647 | None:intergenic | 35.0% | |
TTTGCAGAAGAATGTGGTTT+CGG | - | chr5.1:20946356-20946375 | MS.gene036277:intron | 35.0% | |
! | AAGGAGTACAAGTCTAATTC+TGG | + | chr5.1:20947530-20947549 | None:intergenic | 35.0% |
! | AATCCTGCTACAGAATTTTC+TGG | - | chr5.1:20948595-20948614 | MS.gene036277:CDS | 35.0% |
! | ATTGTTGTTCTTGGAAGCAT+TGG | + | chr5.1:20946890-20946909 | None:intergenic | 35.0% |
! | CACTTCATCATTGTTGTTCT+TGG | + | chr5.1:20946899-20946918 | None:intergenic | 35.0% |
! | CATCTTTTGCAGGAAGTAAA+GGG | + | chr5.1:20946335-20946354 | None:intergenic | 35.0% |
! | CATTCATTTGAGGGCATAAT+TGG | - | chr5.1:20947708-20947727 | MS.gene036277:intron | 35.0% |
! | TCACTCATCATTTCTTTTCC+TGG | + | chr5.1:20947200-20947219 | None:intergenic | 35.0% |
! | TCCTGAAATTTGCTCAACAT+GGG | - | chr5.1:20948200-20948219 | MS.gene036277:intron | 35.0% |
! | TTCCTGAAATTTGCTCAACA+TGG | - | chr5.1:20948199-20948218 | MS.gene036277:intron | 35.0% |
! | TTTTGCTGCATAATGTTGCT+GGG | - | chr5.1:20948700-20948719 | MS.gene036277:CDS | 35.0% |
! | TTTTTGCTGCATAATGTTGC+TGG | - | chr5.1:20948699-20948718 | MS.gene036277:CDS | 35.0% |
!! | ATGTTCAGCTGTTTTACTCT+AGG | - | chr5.1:20947042-20947061 | MS.gene036277:intron | 35.0% |
!! | CATTTGAGTTGGGACAAAAA+TGG | - | chr5.1:20948739-20948758 | MS.gene036277:CDS | 35.0% |
!! | GGTGATTAGTTTGATGAAGT+TGG | - | chr5.1:20946422-20946441 | MS.gene036277:intron | 35.0% |
!! | GTTTTTGCTGATGATGAAGT+TGG | - | chr5.1:20947102-20947121 | MS.gene036277:intron | 35.0% |
!! | TATGGATCAATTGGTCTTTC+GGG | + | chr5.1:20947878-20947897 | None:intergenic | 35.0% |
!!! | AGACACTCATTTTGAAACGA+AGG | - | chr5.1:20947792-20947811 | MS.gene036277:intron | 35.0% |
!!! | CTATTTTGCTTCTGAGACAA+TGG | - | chr5.1:20947388-20947407 | MS.gene036277:intron | 35.0% |
!!! | GACACTCATTTTGAAACGAA+GGG | - | chr5.1:20947793-20947812 | MS.gene036277:intron | 35.0% |
!!! | TGTTTTTTCATGCCAAACAG+CGG | - | chr5.1:20948110-20948129 | MS.gene036277:intron | 35.0% |
AACAGCTGAACATCTTCTCA+AGG | + | chr5.1:20947035-20947054 | None:intergenic | 40.0% | |
AATATGGGACCCACGTAATA+TGG | - | chr5.1:20949226-20949245 | MS.gene036277:CDS | 40.0% | |
AATTAGTATGAATGGGGTGC+GGG | - | chr5.1:20948815-20948834 | MS.gene036277:intron | 40.0% | |
ACAGCTGAACATCTTCTCAA+GGG | + | chr5.1:20947034-20947053 | None:intergenic | 40.0% | |
ACCCATGTTGAGCAAATTTC+AGG | + | chr5.1:20948204-20948223 | None:intergenic | 40.0% | |
ACGATGGAACGGAATTACTT+GGG | - | chr5.1:20946126-20946145 | MS.gene036277:intron | 40.0% | |
AGGAACTACTGGTCATAATC+AGG | - | chr5.1:20946634-20946653 | MS.gene036277:intron | 40.0% | |
AGTGAAAGAAATGCCGAGTA+AGG | - | chr5.1:20946583-20946602 | MS.gene036277:intron | 40.0% | |
ATTGTCTGATTGTTCATCGG+TGG | - | chr5.1:20946149-20946168 | MS.gene036277:intron | 40.0% | |
ATTTGAAGGCTACTGAGTTG+AGG | - | chr5.1:20946226-20946245 | MS.gene036277:intron | 40.0% | |
CATATTCAGCAACACAATCC+TGG | + | chr5.1:20949134-20949153 | None:intergenic | 40.0% | |
CCTTTACTTCCTGCAAAAGA+TGG | - | chr5.1:20946333-20946352 | MS.gene036277:intron | 40.0% | |
CTTTCCTGCAAAACCTTACT+CGG | + | chr5.1:20946599-20946618 | None:intergenic | 40.0% | |
GCGGCCAACCAAAATAATAT+GGG | - | chr5.1:20949211-20949230 | MS.gene036277:CDS | 40.0% | |
GGCCTCCTATAAGATCATTT+AGG | - | chr5.1:20946851-20946870 | MS.gene036277:intron | 40.0% | |
GGGATTGTCTGATTGTTCAT+CGG | - | chr5.1:20946146-20946165 | MS.gene036277:intron | 40.0% | |
GGGTACTTGATGAAAATGTG+AGG | - | chr5.1:20948849-20948868 | MS.gene036277:intron | 40.0% | |
TAGAATATGGGGATTTGGCA+TGG | - | chr5.1:20948882-20948901 | MS.gene036277:intron | 40.0% | |
TAGCCAGAAAATTCTGTAGC+AGG | + | chr5.1:20948601-20948620 | None:intergenic | 40.0% | |
TGAGCTGAAGTTTCTTAGAG+GGG | + | chr5.1:20948924-20948943 | None:intergenic | 40.0% | |
TGAGTGCCTATGAGTATACA+TGG | + | chr5.1:20948018-20948037 | None:intergenic | 40.0% | |
TGCGGCCAACCAAAATAATA+TGG | - | chr5.1:20949210-20949229 | MS.gene036277:CDS | 40.0% | |
TGTAGCAGGATTGAAAAGAC+AGG | + | chr5.1:20948587-20948606 | None:intergenic | 40.0% | |
TGTTGTGTACACTACTTCGA+AGG | + | chr5.1:20947690-20947709 | None:intergenic | 40.0% | |
TTGCAGAAGAATGTGGTTTC+GGG | - | chr5.1:20946357-20946376 | MS.gene036277:intron | 40.0% | |
! | ACACATTGGCTATATGGCAT+TGG | - | chr5.1:20948790-20948809 | MS.gene036277:intron | 40.0% |
! | ACGTGGGTCCCATATTATTT+TGG | + | chr5.1:20949222-20949241 | None:intergenic | 40.0% |
! | AGATGGTTTGCAGAAGAATG+TGG | - | chr5.1:20946350-20946369 | MS.gene036277:intron | 40.0% |
! | CCATCTTTTGCAGGAAGTAA+AGG | + | chr5.1:20946336-20946355 | None:intergenic | 40.0% |
! | TTCTGCAAACCATCTTTTGC+AGG | + | chr5.1:20946345-20946364 | None:intergenic | 40.0% |
!! | ATATTGTTGGGTTGAGTCTC+AGG | - | chr5.1:20947972-20947991 | MS.gene036277:intron | 40.0% |
!! | GATTTGCTGATACCGTTGAT+GGG | - | chr5.1:20946391-20946410 | MS.gene036277:intron | 40.0% |
!!! | GGGTCCCATATTATTTTGGT+TGG | + | chr5.1:20949218-20949237 | None:intergenic | 40.0% |
AAATTAGGGGGCTCATGTCA+TGG | - | chr5.1:20948351-20948370 | MS.gene036277:CDS | 45.0% | |
AATATGGGGATTTGGCATGG+AGG | - | chr5.1:20948885-20948904 | MS.gene036277:intron | 45.0% | |
ACTACTGGTCATAATCAGGC+AGG | - | chr5.1:20946638-20946657 | MS.gene036277:intron | 45.0% | |
ACTCTTTGTGAAGGTCAGCA+TGG | - | chr5.1:20946942-20946961 | MS.gene036277:intron | 45.0% | |
ACTTGTCCCACCATATTACG+TGG | + | chr5.1:20949239-20949258 | None:intergenic | 45.0% | |
ATATGGGGATTTGGCATGGA+GGG | - | chr5.1:20948886-20948905 | MS.gene036277:intron | 45.0% | |
ATCCGAATCCATTTCCCTCT+CGG | + | chr5.1:20946277-20946296 | None:intergenic | 45.0% | |
ATGCGCCCATTAGTTGTTCT+CGG | + | chr5.1:20948380-20948399 | None:intergenic | 45.0% | |
ATGGAGACTGGATGCTTGTA+GGG | - | chr5.1:20947279-20947298 | MS.gene036277:intron | 45.0% | |
ATTAGTATGAATGGGGTGCG+GGG | - | chr5.1:20948816-20948835 | MS.gene036277:intron | 45.0% | |
CTCATAGGCACTCACATTTG+TGG | - | chr5.1:20948024-20948043 | MS.gene036277:intron | 45.0% | |
CTTGTCCCACCATATTACGT+GGG | + | chr5.1:20949238-20949257 | None:intergenic | 45.0% | |
GAACATCCTGCACATGCATA+AGG | + | chr5.1:20949468-20949487 | None:intergenic | 45.0% | |
GACGATGGAACGGAATTACT+TGG | - | chr5.1:20946125-20946144 | MS.gene036277:intron | 45.0% | |
GATATCATACCACCGCTGTT+TGG | + | chr5.1:20948125-20948144 | None:intergenic | 45.0% | |
GATGAAGTGGATGGAAAACC+AGG | - | chr5.1:20946910-20946929 | MS.gene036277:intron | 45.0% | |
GCAATTCCTTATGCATGTGC+AGG | - | chr5.1:20949459-20949478 | MS.gene036277:CDS | 45.0% | |
GCAGGAAGTAAAGGGAACAA+TGG | + | chr5.1:20946327-20946346 | None:intergenic | 45.0% | |
GGCTACCGAGAACAACTAAT+GGG | - | chr5.1:20948372-20948391 | MS.gene036277:CDS | 45.0% | |
GTGTCTGTTCTTTGAGTGCT+AGG | - | chr5.1:20948070-20948089 | MS.gene036277:intron | 45.0% | |
GTTCAGCATGCACTATCCTT+AGG | - | chr5.1:20948555-20948574 | MS.gene036277:CDS | 45.0% | |
TGCAGAAGAATGTGGTTTCG+GGG | - | chr5.1:20946358-20946377 | MS.gene036277:intron | 45.0% | |
TGGCTACCGAGAACAACTAA+TGG | - | chr5.1:20948371-20948390 | MS.gene036277:CDS | 45.0% | |
TTTGGCGATTGTGTAATGGC+AGG | - | chr5.1:20947152-20947171 | MS.gene036277:intron | 45.0% | |
TTTGTGAAGGTCAGCATGGA+TGG | - | chr5.1:20946946-20946965 | MS.gene036277:intron | 45.0% | |
! | AAGGCTACTGAGTTGAGGTT+GGG | - | chr5.1:20946231-20946250 | MS.gene036277:intron | 45.0% |
! | AATGCCGAGTAAGGTTTTGC+AGG | - | chr5.1:20946592-20946611 | MS.gene036277:intron | 45.0% |
! | ACCTTCACAAAGAGTGCAGT+GGG | + | chr5.1:20946937-20946956 | None:intergenic | 45.0% |
! | CGAGTAAGGTTTTGCAGGAA+AGG | - | chr5.1:20946597-20946616 | MS.gene036277:intron | 45.0% |
! | TTCTTTTCCTGGAGCTCCAT+GGG | + | chr5.1:20947189-20947208 | None:intergenic | 45.0% |
! | TTTCTTTTCCTGGAGCTCCA+TGG | + | chr5.1:20947190-20947209 | None:intergenic | 45.0% |
! | TTTTTCATGCCAAACAGCGG+TGG | - | chr5.1:20948113-20948132 | MS.gene036277:intron | 45.0% |
!! | GGATTTGCTGATACCGTTGA+TGG | - | chr5.1:20946390-20946409 | MS.gene036277:intron | 45.0% |
AACTGTCGTCGACGATGGAA+CGG | - | chr5.1:20946115-20946134 | MS.gene036277:intron | 50.0% | |
ACAGGGCACAAGTTGTTGGT+TGG | - | chr5.1:20946830-20946849 | MS.gene036277:intron | 50.0% | |
ATGGGACCCACGTAATATGG+TGG | - | chr5.1:20949229-20949248 | MS.gene036277:CDS | 50.0% | |
CACCTGCGAAAACCCATCAA+CGG | + | chr5.1:20946406-20946425 | None:intergenic | 50.0% | |
GATGAGTGAGAGCAAGCTGA+GGG | - | chr5.1:20947211-20947230 | MS.gene036277:intron | 50.0% | |
GATGGAGACTGGATGCTTGT+AGG | - | chr5.1:20947278-20947297 | MS.gene036277:intron | 50.0% | |
GGGTTGAGTCTCAGGTTTAC+TGG | - | chr5.1:20947980-20947999 | MS.gene036277:intron | 50.0% | |
GTAGTTCCTCTAGCTGCACA+AGG | + | chr5.1:20946623-20946642 | None:intergenic | 50.0% | |
GTGGTTTCGGGGAATAAGAG+AGG | - | chr5.1:20946369-20946388 | MS.gene036277:intron | 50.0% | |
TCAATCACCCGAGAGGGAAA+TGG | - | chr5.1:20946266-20946285 | MS.gene036277:intron | 50.0% | |
TCCAAGGGGGACATACAAGT+AGG | + | chr5.1:20947852-20947871 | None:intergenic | 50.0% | |
TCCCACTGCACTCTTTGTGA+AGG | - | chr5.1:20946933-20946952 | MS.gene036277:intron | 50.0% | |
TCCGAATCCATTTCCCTCTC+GGG | + | chr5.1:20946276-20946295 | None:intergenic | 50.0% | |
TCCTACTTGTATGTCCCCCT+TGG | - | chr5.1:20947848-20947867 | MS.gene036277:intron | 50.0% | |
TGATGAGTGAGAGCAAGCTG+AGG | - | chr5.1:20947210-20947229 | MS.gene036277:intron | 50.0% | |
TGGAGACTGGATGCTTGTAG+GGG | - | chr5.1:20947280-20947299 | MS.gene036277:intron | 50.0% | |
TGGATGGTGCTCCCTATCTA+AGG | - | chr5.1:20946962-20946981 | MS.gene036277:intron | 50.0% | |
TGGGACCCACGTAATATGGT+GGG | - | chr5.1:20949230-20949249 | MS.gene036277:CDS | 50.0% | |
TGGTCTTTCGGGACTTCCAA+GGG | + | chr5.1:20947867-20947886 | None:intergenic | 50.0% | |
TGGTGCTCCCTATCTAAGGA+AGG | - | chr5.1:20946966-20946985 | MS.gene036277:intron | 50.0% | |
TGTGACAGGGCACAAGTTGT+TGG | - | chr5.1:20946826-20946845 | MS.gene036277:intron | 50.0% | |
TGTGCAGCTAGAGGAACTAC+TGG | - | chr5.1:20946623-20946642 | MS.gene036277:intron | 50.0% | |
! | AAGCTGAGGGACCTTTTGCA+TGG | - | chr5.1:20947224-20947243 | MS.gene036277:intron | 50.0% |
! | ACCCGAGAGGGAAATGGATT+CGG | - | chr5.1:20946272-20946291 | MS.gene036277:intron | 50.0% |
! | ATGAAGGGTTCTGACGCCAT+TGG | - | chr5.1:20949515-20949534 | MS.gene036277:CDS | 50.0% |
! | GAAGGCTACTGAGTTGAGGT+TGG | - | chr5.1:20946230-20946249 | MS.gene036277:intron | 50.0% |
! | GACCTTCACAAAGAGTGCAG+TGG | + | chr5.1:20946938-20946957 | None:intergenic | 50.0% |
! | TGAAGGGTTCTGACGCCATT+GGG | - | chr5.1:20949516-20949535 | MS.gene036277:CDS | 50.0% |
! | TTCTATCGCTGGTTGTGCAC+CGG | - | chr5.1:20946667-20946686 | MS.gene036277:intron | 50.0% |
! | TTGGTCTTTCGGGACTTCCA+AGG | + | chr5.1:20947868-20947887 | None:intergenic | 50.0% |
!!! | TACCGTTGATGGGTTTTCGC+AGG | - | chr5.1:20946401-20946420 | MS.gene036277:intron | 50.0% |
ATGCTATCGCCTAGACCTGG+TGG | - | chr5.1:20946545-20946564 | MS.gene036277:intron | 55.0% | |
CCTCTCGGGTGATTGAGATC+CGG | + | chr5.1:20946262-20946281 | None:intergenic | 55.0% | |
CGGATCTCAATCACCCGAGA+GGG | - | chr5.1:20946260-20946279 | MS.gene036277:intron | 55.0% | |
CTCTCGGGTGATTGAGATCC+GGG | + | chr5.1:20946261-20946280 | None:intergenic | 55.0% | |
GAGTTGAGGTTGGGTCTTCC+CGG | - | chr5.1:20946240-20946259 | MS.gene036277:intron | 55.0% | |
GCTTGTAGGGGACGTACCAT+GGG | - | chr5.1:20947292-20947311 | MS.gene036277:intron | 55.0% | |
GGTCTTTCGGGACTTCCAAG+GGG | + | chr5.1:20947866-20947885 | None:intergenic | 55.0% | |
GTCTTTCGGGACTTCCAAGG+GGG | + | chr5.1:20947865-20947884 | None:intergenic | 55.0% | |
GTGATGCTATCGCCTAGACC+TGG | - | chr5.1:20946542-20946561 | MS.gene036277:intron | 55.0% | |
TGCTTGTAGGGGACGTACCA+TGG | - | chr5.1:20947291-20947310 | MS.gene036277:intron | 55.0% | |
TGTGTAATGGCAGGCCAGTG+TGG | - | chr5.1:20947161-20947180 | MS.gene036277:intron | 55.0% | |
! | ACAAAGAGTGCAGTGGGACC+TGG | + | chr5.1:20946931-20946950 | None:intergenic | 55.0% |
! | GAAAGGCCTTGTGCAGCTAG+AGG | - | chr5.1:20946614-20946633 | MS.gene036277:intron | 55.0% |
CCGGATCTCAATCACCCGAG+AGG | - | chr5.1:20946259-20946278 | MS.gene036277:intron | 60.0% | |
GAGCTCCATGGGAACCACAC+TGG | + | chr5.1:20947178-20947197 | None:intergenic | 60.0% | |
GCGCAAACTGTCGTCGACGA+TGG | - | chr5.1:20946110-20946129 | MS.gene036277:CDS | 60.0% | |
GGGGTGCGGGGAATTCAGTA+GGG | - | chr5.1:20948828-20948847 | MS.gene036277:intron | 60.0% | |
GGGTGCGGGGAATTCAGTAG+GGG | - | chr5.1:20948829-20948848 | MS.gene036277:intron | 60.0% | |
TGGGGTGCGGGGAATTCAGT+AGG | - | chr5.1:20948827-20948846 | MS.gene036277:intron | 60.0% | |
TGTGGTTCCCATGGAGCTCC+AGG | - | chr5.1:20947179-20947198 | MS.gene036277:intron | 60.0% | |
!! | GCAGGTGCTGCTTCTATCGC+TGG | - | chr5.1:20946656-20946675 | MS.gene036277:intron | 60.0% |
CGGTGGCTACGGAGGAGGAA+GGG | - | chr5.1:20946085-20946104 | MS.gene036277:CDS | 65.0% | |
GCAGGCCAGTGTGGTTCCCA+TGG | - | chr5.1:20947170-20947189 | MS.gene036277:intron | 65.0% | |
GCCTAGACCTGGTGGAGCTC+AGG | - | chr5.1:20946553-20946572 | MS.gene036277:intron | 65.0% | |
GCCTGAGCTCCACCAGGTCT+AGG | + | chr5.1:20946557-20946576 | None:intergenic | 65.0% | |
TGGCTACGGAGGAGGAAGGG+CGG | - | chr5.1:20946088-20946107 | MS.gene036277:CDS | 65.0% | |
GCGGTGGCTACGGAGGAGGA+AGG | - | chr5.1:20946084-20946103 | MS.gene036277:CDS | 70.0% | |
GTCTCCGACGGCGGTGGCTA+CGG | - | chr5.1:20946074-20946093 | MS.gene036277:CDS | 70.0% | |
GTGCTCGCCTGAGCTCCACC+AGG | + | chr5.1:20946563-20946582 | None:intergenic | 70.0% | |
TCCTCCGTAGCCACCGCCGT+CGG | + | chr5.1:20946081-20946100 | None:intergenic | 70.0% | |
GACGGCGGTGGCTACGGAGG+AGG | - | chr5.1:20946080-20946099 | MS.gene036277:CDS | 75.0% | |
TCCGACGGCGGTGGCTACGG+AGG | - | chr5.1:20946077-20946096 | MS.gene036277:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 20946072 | 20949542 | 20946072 | ID=MS.gene036277 |
chr5.1 | mRNA | 20946072 | 20949542 | 20946072 | ID=MS.gene036277.t1;Parent=MS.gene036277 |
chr5.1 | exon | 20949192 | 20949542 | 20949192 | ID=MS.gene036277.t1.exon1;Parent=MS.gene036277.t1 |
chr5.1 | CDS | 20949192 | 20949542 | 20949192 | ID=cds.MS.gene036277.t1;Parent=MS.gene036277.t1 |
chr5.1 | exon | 20948918 | 20949102 | 20948918 | ID=MS.gene036277.t1.exon2;Parent=MS.gene036277.t1 |
chr5.1 | CDS | 20948918 | 20949102 | 20948918 | ID=cds.MS.gene036277.t1;Parent=MS.gene036277.t1 |
chr5.1 | exon | 20948551 | 20948780 | 20948551 | ID=MS.gene036277.t1.exon3;Parent=MS.gene036277.t1 |
chr5.1 | CDS | 20948551 | 20948780 | 20948551 | ID=cds.MS.gene036277.t1;Parent=MS.gene036277.t1 |
chr5.1 | exon | 20948299 | 20948440 | 20948299 | ID=MS.gene036277.t1.exon4;Parent=MS.gene036277.t1 |
chr5.1 | CDS | 20948299 | 20948440 | 20948299 | ID=cds.MS.gene036277.t1;Parent=MS.gene036277.t1 |
chr5.1 | exon | 20946072 | 20946133 | 20946072 | ID=MS.gene036277.t1.exon5;Parent=MS.gene036277.t1 |
chr5.1 | CDS | 20946072 | 20946133 | 20946072 | ID=cds.MS.gene036277.t1;Parent=MS.gene036277.t1 |
Gene Sequence |
Protein sequence |