AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036277


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036277.t1 MTR_5g030710 96.285 323 12 0 1 323 1 323 0.0 651
MS.gene036277.t1 MTR_8g067530 71.098 346 67 6 1 323 9 344 7.72e-173 483
MS.gene036277.t1 MTR_5g067350 59.494 316 102 11 21 323 33 335 1.97e-112 330
MS.gene036277.t1 MTR_2g101500 50.588 340 110 10 16 323 1 314 1.48e-99 296
MS.gene036277.t1 MTR_6g488150 54.380 274 78 6 51 323 15 242 3.54e-90 270
MS.gene036277.t1 MTR_8g103030 50.000 298 107 8 40 323 12 281 1.91e-87 264
MS.gene036277.t1 MTR_5g067350 53.200 250 94 10 21 257 33 272 2.50e-66 209
MS.gene036277.t1 MTR_1g080860 46.570 277 94 9 51 323 15 241 1.15e-64 204
MS.gene036277.t1 MTR_1g080860 46.570 277 94 9 51 323 15 241 1.37e-64 204
MS.gene036277.t1 MTR_1g093240 45.620 274 91 6 51 323 8 224 1.31e-63 201
MS.gene036277.t1 MTR_1g093240 46.350 274 89 7 51 323 8 224 1.39e-63 201
MS.gene036277.t1 MTR_1g070520 62.658 158 53 3 170 323 78 233 1.05e-61 197
MS.gene036277.t1 MTR_7g096090 62.162 148 53 2 176 323 94 238 3.40e-60 193
MS.gene036277.t1 MTR_1g070830 40.143 279 78 9 48 323 9 201 5.82e-52 170
MS.gene036277.t1 MTR_1g093240 44.488 254 83 7 51 303 8 204 1.73e-51 169
MS.gene036277.t1 MTR_1g076270 45.263 190 70 5 134 323 23 178 5.49e-48 159
MS.gene036277.t1 MTR_1g093350 45.263 190 70 5 134 323 23 178 5.49e-48 159
MS.gene036277.t1 MTR_6g488150 47.115 208 63 6 51 257 15 176 6.69e-48 159
MS.gene036277.t1 MTR_1g040675 37.363 273 80 8 51 323 1 182 2.43e-46 155
MS.gene036277.t1 MTR_1g040675 35.968 253 71 8 51 303 1 162 1.39e-36 129
MS.gene036277.t1 MTR_1g069495 43.750 176 67 6 180 323 81 256 1.70e-34 127
MS.gene036277.t1 MTR_4g011880 50.000 146 43 4 178 323 51 166 8.20e-34 122
MS.gene036277.t1 MTR_8g014520 39.583 192 93 6 151 319 69 260 5.08e-33 123
MS.gene036277.t1 MTR_8g014520 39.583 192 93 6 151 319 69 260 5.39e-33 123
MS.gene036277.t1 MTR_2g100780 39.888 178 85 4 163 319 78 254 9.50e-32 120
MS.gene036277.t1 MTR_2g100780 39.888 178 85 4 163 319 78 254 1.28e-31 119
MS.gene036277.t1 MTR_2g102490 47.788 113 47 3 209 318 80 183 2.33e-29 111
MS.gene036277.t1 MTR_4g124300 34.000 150 66 5 175 318 60 182 9.21e-20 85.5
MS.gene036277.t1 MTR_3g106850 29.518 166 84 4 162 319 69 209 5.66e-19 84.3
MS.gene036277.t1 MTR_1g085750 41.818 110 49 3 214 323 82 176 9.62e-18 79.7
MS.gene036277.t1 MTR_7g110790 41.176 102 46 2 215 316 68 155 1.10e-16 76.6
MS.gene036277.t1 MTR_4g115075 28.105 153 84 3 166 316 77 205 3.23e-14 70.9
MS.gene036277.t1 MTR_1g109510 28.302 159 87 5 159 316 36 168 1.39e-12 65.5
MS.gene036277.t1 MTR_1g085750 41.111 90 39 2 214 303 82 157 4.31e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036277.t1 AT2G22670 67.203 311 70 9 21 323 21 307 9.18e-135 385
MS.gene036277.t1 AT2G22670 67.203 311 70 9 21 323 21 307 9.18e-135 385
MS.gene036277.t1 AT2G22670 67.203 311 70 9 21 323 21 307 1.05e-134 385
MS.gene036277.t1 AT2G22670 67.203 311 70 9 21 323 21 307 1.05e-134 385
MS.gene036277.t1 AT2G22670 67.203 311 70 9 21 323 38 324 1.57e-134 385
MS.gene036277.t1 AT5G65670 59.177 316 108 6 13 323 25 324 6.39e-124 358
MS.gene036277.t1 AT5G65670 59.177 316 108 6 13 323 25 324 7.77e-124 358
MS.gene036277.t1 AT4G29080 47.678 323 122 8 16 323 3 293 1.74e-87 265
MS.gene036277.t1 AT4G14550 45.421 273 92 5 51 323 1 216 5.84e-68 212
MS.gene036277.t1 AT4G14550 46.154 273 90 6 51 323 1 216 7.96e-68 212
MS.gene036277.t1 AT3G04730 42.509 287 87 6 51 323 2 224 1.75e-63 201
MS.gene036277.t1 AT1G04250 43.321 277 91 8 49 323 5 217 7.46e-63 199
MS.gene036277.t1 AT3G23050 43.310 284 91 8 51 323 6 230 1.31e-61 196
MS.gene036277.t1 AT4G14550 43.651 252 85 5 51 302 1 195 3.33e-55 178
MS.gene036277.t1 AT3G23050 41.667 264 84 8 51 303 6 210 7.06e-49 162
MS.gene036277.t1 AT1G04240 55.034 149 46 4 175 323 58 185 2.14e-47 158
MS.gene036277.t1 AT1G04240 55.034 149 46 4 175 323 158 285 1.36e-46 159
MS.gene036277.t1 AT5G43700 50.336 149 51 4 175 323 56 181 1.39e-42 145
MS.gene036277.t1 AT3G23030 51.007 149 41 3 175 323 54 170 5.94e-41 141
MS.gene036277.t1 AT3G23030 51.007 149 41 3 175 323 141 257 2.51e-40 142
MS.gene036277.t1 AT4G28640 43.750 176 72 4 166 322 73 240 5.57e-37 133
MS.gene036277.t1 AT4G28640 43.750 176 72 4 166 322 73 240 6.24e-37 133
MS.gene036277.t1 AT2G33310 44.134 179 71 4 166 323 60 230 7.33e-37 132
MS.gene036277.t1 AT2G33310 44.134 179 71 4 166 323 60 230 7.33e-37 132
MS.gene036277.t1 AT1G15580 44.828 145 49 2 174 318 46 159 1.56e-36 129
MS.gene036277.t1 AT4G28640 44.767 172 76 4 166 322 73 240 4.20e-36 132
MS.gene036277.t1 AT1G52830 43.919 148 55 4 176 323 65 184 6.68e-36 128
MS.gene036277.t1 AT2G33310 44.444 180 70 5 166 323 60 231 6.98e-36 130
MS.gene036277.t1 AT1G04550 42.458 179 73 4 166 323 54 223 7.97e-35 127
MS.gene036277.t1 AT3G15540 45.342 161 62 4 164 323 53 188 1.01e-34 125
MS.gene036277.t1 AT4G14560 48.276 145 45 3 176 320 50 164 5.70e-34 122
MS.gene036277.t1 AT4G14550 40.580 207 66 5 51 256 1 151 3.48e-33 121
MS.gene036277.t1 AT3G16500 40.523 153 72 3 182 319 104 252 1.69e-30 116
MS.gene036277.t1 AT3G16500 40.523 153 72 3 182 319 104 252 1.95e-30 116
MS.gene036277.t1 AT1G04100 38.922 167 74 4 183 323 95 259 6.08e-30 115
MS.gene036277.t1 AT1G51950 38.608 158 73 4 182 319 97 250 1.53e-27 108
MS.gene036277.t1 AT3G23050 36.866 217 69 7 51 256 6 165 1.07e-26 103
MS.gene036277.t1 AT5G25890 39.583 144 64 3 180 323 47 167 2.37e-26 103
MS.gene036277.t1 AT3G17600 36.774 155 68 6 164 316 28 154 4.96e-24 96.3
MS.gene036277.t1 AT3G62100 43.137 102 43 2 215 316 82 168 5.96e-20 85.9
MS.gene036277.t1 AT2G46990 40.385 104 47 1 215 318 84 172 2.36e-19 84.3
MS.gene036277.t1 AT3G62100 41.573 89 37 2 215 303 82 155 2.49e-14 70.1
MS.gene036277.t1 AT2G46990 38.202 89 40 1 215 303 84 157 1.81e-13 67.8
MS.gene036277.t1 AT1G15050 37.143 105 50 1 217 321 62 150 4.65e-13 66.2
MS.gene036277.t1 AT1G15050 37.143 105 50 1 217 321 94 182 9.84e-13 66.2
MS.gene036277.t1 AT4G32280 29.703 101 51 2 216 316 118 198 4.05e-12 65.1
MS.gene036277.t1 AT4G32280 25.000 168 75 4 180 316 93 240 4.88e-12 65.5
MS.gene036277.t1 AT1G04550 36.842 114 51 3 166 258 54 167 7.42e-12 63.5
MS.gene036277.t1 AT2G01200 33.333 126 64 2 196 321 83 188 7.62e-12 63.9
MS.gene036277.t1 AT2G01200 33.333 126 64 2 196 321 83 188 7.62e-12 63.9

Find 98 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTCATCATTGTTGTTCT+TGG 0.148811 5.1:+20948696 None:intergenic
TTGCAGAAGAATGTGGTTTC+GGG 0.253040 5.1:-20949235 MS.gene036277:CDS
GGTAAGTTTAATGCTAATTC+AGG 0.253741 5.1:-20949080 MS.gene036277:CDS
TAGATCTACCTTCCTTAGAT+AGG 0.286933 5.1:+20948618 None:intergenic
TTTGCAGAAGAATGTGGTTT+CGG 0.361512 5.1:-20949236 MS.gene036277:CDS
GAGTTGAGGTTGGGTCTTCC+CGG 0.364318 5.1:-20949352 MS.gene036277:CDS
GGCCTCCTATAAGATCATTT+AGG 0.368510 5.1:-20948741 MS.gene036277:CDS
GGTTCTGACGCCATTGGGTT+AGG 0.402217 5.1:-20946071 None:intergenic
TGGATGGTGCTCCCTATCTA+AGG 0.406442 5.1:-20948630 MS.gene036277:CDS
GATGGAGACTGGATGCTTGT+AGG 0.411867 5.1:-20948314 MS.gene036277:CDS
AAAAGTGAACTTGAATTTGA+AGG 0.413246 5.1:-20949380 MS.gene036277:CDS
AAGGCTACTGAGTTGAGGTT+GGG 0.419598 5.1:-20949361 MS.gene036277:CDS
GGATTTGCTGATACCGTTGA+TGG 0.420125 5.1:-20949202 MS.gene036277:CDS
TCAATCACCCGAGAGGGAAA+TGG 0.422310 5.1:-20949326 MS.gene036277:CDS
GTCTCCGACGGCGGTGGCTA+CGG 0.424136 5.1:-20949518 MS.gene036277:CDS
GACGATGGAACGGAATTACT+TGG 0.426582 5.1:-20949467 MS.gene036277:CDS
CCTTTACTTCCTGCAAAAGA+TGG 0.428383 5.1:-20949259 MS.gene036277:CDS
ATGGAGACTGGATGCTTGTA+GGG 0.429252 5.1:-20948313 MS.gene036277:CDS
AGGAACTACTGGTCATAATC+AGG 0.436346 5.1:-20948958 MS.gene036277:CDS
CTCTCGGGTGATTGAGATCC+GGG 0.441176 5.1:+20949334 None:intergenic
TGAAGGGTTCTGACGCCATT+GGG 0.446469 5.1:-20946076 MS.gene036277:CDS
ATTGTTGTTCTTGGAAGCAT+TGG 0.451257 5.1:+20948705 None:intergenic
ATCCGAATCCATTTCCCTCT+CGG 0.452945 5.1:+20949318 None:intergenic
TCCGAATCCATTTCCCTCTC+GGG 0.455237 5.1:+20949319 None:intergenic
ACCCGAGAGGGAAATGGATT+CGG 0.455743 5.1:-20949320 MS.gene036277:CDS
CCTCTCGGGTGATTGAGATC+CGG 0.459016 5.1:+20949333 None:intergenic
TGTGGTTCCCATGGAGCTCC+AGG 0.460461 5.1:-20948413 MS.gene036277:CDS
CTTTCCTGCAAAACCTTACT+CGG 0.461106 5.1:+20948996 None:intergenic
GCCTAGACCTGGTGGAGCTC+AGG 0.463855 5.1:-20949039 MS.gene036277:CDS
GCAGGTGCTGCTTCTATCGC+TGG 0.467925 5.1:-20948936 MS.gene036277:CDS
CAGAAGGCTGAAAATAATGA+AGG 0.471961 5.1:-20946093 MS.gene036277:CDS
ATGAAGGGTTCTGACGCCAT+TGG 0.475878 5.1:-20946077 MS.gene036277:CDS
GCCTGAGCTCCACCAGGTCT+AGG 0.476166 5.1:+20949038 None:intergenic
GAAGGCTACTGAGTTGAGGT+TGG 0.492437 5.1:-20949362 MS.gene036277:CDS
GTAAGTTTAATGCTAATTCA+GGG 0.493399 5.1:-20949079 MS.gene036277:CDS
AGATCTACCTTCCTTAGATA+GGG 0.496829 5.1:+20948619 None:intergenic
GACGGCGGTGGCTACGGAGG+AGG 0.499617 5.1:-20949512 MS.gene036277:CDS
AGTGAAAGAAATGCCGAGTA+AGG 0.502631 5.1:-20949009 MS.gene036277:CDS
ACAAAGAGTGCAGTGGGACC+TGG 0.505055 5.1:+20948664 None:intergenic
GTGGTTTCGGGGAATAAGAG+AGG 0.508267 5.1:-20949223 MS.gene036277:CDS
TTCCTAAATGATCTTATAGG+AGG 0.509027 5.1:+20948739 None:intergenic
GCAGGCCAGTGTGGTTCCCA+TGG 0.511832 5.1:-20948422 MS.gene036277:intron
CATATTCTGAACCATGCAAA+AGG 0.516368 5.1:+20948357 None:intergenic
TGCTTGTAGGGGACGTACCA+TGG 0.519764 5.1:-20948301 MS.gene036277:CDS
TTCTATCGCTGGTTGTGCAC+CGG 0.524204 5.1:-20948925 MS.gene036277:CDS
TGTGACAGGGCACAAGTTGT+TGG 0.524224 5.1:-20948766 MS.gene036277:intron
CAAGAACAACAATGATGAAG+TGG 0.532840 5.1:-20948695 MS.gene036277:CDS
CTCACTTATGAAGATAAAGA+TGG 0.536028 5.1:-20948332 MS.gene036277:CDS
ACCTTCACAAAGAGTGCAGT+GGG 0.538673 5.1:+20948658 None:intergenic
GGAAATGTCTCCGACGGCGG+TGG 0.539855 5.1:-20949524 None:intergenic
GCGGTGGCTACGGAGGAGGA+AGG 0.542724 5.1:-20949508 MS.gene036277:CDS
ATGAAGATAAAGATGGAGAC+TGG 0.547731 5.1:-20948325 MS.gene036277:CDS
GGGATTGTCTGATTGTTCAT+CGG 0.548946 5.1:-20949446 MS.gene036277:CDS
AACAGCTGAACATCTTCTCA+AGG 0.549658 5.1:+20948560 None:intergenic
GAGCTCCATGGGAACCACAC+TGG 0.553553 5.1:+20948417 None:intergenic
GATGAAGTGGATGGAAAACC+AGG 0.553790 5.1:-20948682 MS.gene036277:CDS
TGTGCAGCTAGAGGAACTAC+TGG 0.555927 5.1:-20948969 MS.gene036277:CDS
GTGCTCGCCTGAGCTCCACC+AGG 0.561039 5.1:+20949032 None:intergenic
GCTTGTAGGGGACGTACCAT+GGG 0.563761 5.1:-20948300 MS.gene036277:CDS
GATTTGCTGATACCGTTGAT+GGG 0.566751 5.1:-20949201 MS.gene036277:CDS
TTTGTGAAGGTCAGCATGGA+TGG 0.570866 5.1:-20948646 MS.gene036277:CDS
GCAGGAAGTAAAGGGAACAA+TGG 0.573981 5.1:+20949268 None:intergenic
ACAGGGCACAAGTTGTTGGT+TGG 0.575157 5.1:-20948762 MS.gene036277:intron
AGATGGTTTGCAGAAGAATG+TGG 0.577585 5.1:-20949242 MS.gene036277:CDS
GCGCAAACTGTCGTCGACGA+TGG 0.579580 5.1:-20949482 MS.gene036277:CDS
TAAAGAACATCTTACTCCCA+TGG 0.581718 5.1:+20948284 None:intergenic
TCCTCCGTAGCCACCGCCGT+CGG 0.586598 5.1:+20949514 None:intergenic
CGGTGGCTACGGAGGAGGAA+GGG 0.593859 5.1:-20949507 MS.gene036277:CDS
ACTACTGGTCATAATCAGGC+AGG 0.595833 5.1:-20948954 MS.gene036277:CDS
ACGATGGAACGGAATTACTT+GGG 0.597669 5.1:-20949466 MS.gene036277:CDS
CGGATCTCAATCACCCGAGA+GGG 0.597943 5.1:-20949332 MS.gene036277:CDS
AACTGTCGTCGACGATGGAA+CGG 0.600872 5.1:-20949477 MS.gene036277:CDS
TCCCACTGCACTCTTTGTGA+AGG 0.601153 5.1:-20948659 MS.gene036277:CDS
AACAACAATGATGAAGTGGA+TGG 0.601893 5.1:-20948691 MS.gene036277:CDS
TAGGGAAATGTCTCCGACGG+CGG 0.603529 5.1:-20949527 None:intergenic
TCCGACGGCGGTGGCTACGG+AGG 0.612859 5.1:-20949515 MS.gene036277:CDS
TGATGAGTGAGAGCAAGCTG+AGG 0.616205 5.1:-20948382 MS.gene036277:CDS
ATGCTATCGCCTAGACCTGG+TGG 0.616679 5.1:-20949047 MS.gene036277:CDS
ATTGTCTGATTGTTCATCGG+TGG 0.617997 5.1:-20949443 MS.gene036277:CDS
TGCAGAAGAATGTGGTTTCG+GGG 0.623774 5.1:-20949234 MS.gene036277:CDS
GTGATGCTATCGCCTAGACC+TGG 0.627514 5.1:-20949050 MS.gene036277:CDS
TGGTGCTCCCTATCTAAGGA+AGG 0.627651 5.1:-20948626 MS.gene036277:CDS
GATGAGTGAGAGCAAGCTGA+GGG 0.627937 5.1:-20948381 MS.gene036277:CDS
TGGCTACGGAGGAGGAAGGG+CGG 0.628102 5.1:-20949504 MS.gene036277:CDS
GAAAGGCCTTGTGCAGCTAG+AGG 0.628138 5.1:-20948978 MS.gene036277:CDS
AGAAGGCTGAAAATAATGAA+GGG 0.637227 5.1:-20946092 MS.gene036277:CDS
TGTTCATTGATACTTGCAGA+AGG 0.637954 5.1:-20946109 MS.gene036277:CDS
ATTTGAAGGCTACTGAGTTG+AGG 0.639042 5.1:-20949366 MS.gene036277:CDS
GACCTTCACAAAGAGTGCAG+TGG 0.642687 5.1:+20948657 None:intergenic
CACCTGCGAAAACCCATCAA+CGG 0.645296 5.1:+20949189 None:intergenic
TGTGTAATGGCAGGCCAGTG+TGG 0.646395 5.1:-20948431 MS.gene036277:intron
GGTTAGGGAAATGTCTCCGA+CGG 0.647341 5.1:-20949530 None:intergenic
ACAGCTGAACATCTTCTCAA+GGG 0.651538 5.1:+20948561 None:intergenic
TGGAGACTGGATGCTTGTAG+GGG 0.651918 5.1:-20948312 MS.gene036277:CDS
GTAGTTCCTCTAGCTGCACA+AGG 0.655154 5.1:+20948972 None:intergenic
ACTCTTTGTGAAGGTCAGCA+TGG 0.660309 5.1:-20948650 MS.gene036277:CDS
AGAACACATACCTAACCCAA+TGG 0.669918 5.1:+20946061 None:intergenic
CCGGATCTCAATCACCCGAG+AGG 0.692711 5.1:-20949333 MS.gene036277:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTAATCGAAAATTA+GGG - chr5.1:20948337-20948356 MS.gene036277:CDS 10.0%
!! ACAAATTAAGAAATACAAAA+AGG - chr5.1:20947586-20947605 MS.gene036277:intron 15.0%
!! ATCTTATATACAAATATTGT+TGG - chr5.1:20947959-20947978 MS.gene036277:intron 15.0%
!! TCTTATATACAAATATTGTT+GGG - chr5.1:20947960-20947979 MS.gene036277:intron 15.0%
!!! AATTTTTAATCGAAAATTAG+GGG - chr5.1:20948338-20948357 MS.gene036277:CDS 15.0%
!!! GTAATTTTTAATCGAAAATT+AGG - chr5.1:20948336-20948355 MS.gene036277:CDS 15.0%
!!! TATTATAGTTCTGTAATTTA+CGG - chr5.1:20949332-20949351 MS.gene036277:CDS 15.0%
!!! TATTTTTTTTGAAGAAATTC+AGG - chr5.1:20949040-20949059 MS.gene036277:CDS 15.0%
!! ATATGAAAATTTACCATATC+AGG + chr5.1:20946807-20946826 None:intergenic 20.0%
!!! AATAACTTTGCTTTCTAAAA+AGG + chr5.1:20948524-20948543 None:intergenic 20.0%
!!! ATAACTTTGCTTTCTAAAAA+GGG + chr5.1:20948523-20948542 None:intergenic 20.0%
!!! ATTATAGTTCTGTAATTTAC+GGG - chr5.1:20949333-20949352 MS.gene036277:CDS 20.0%
!!! ATTTTTAATCGAAAATTAGG+GGG - chr5.1:20948339-20948358 MS.gene036277:CDS 20.0%
!!! GTAATATATTCTACTTTTGT+AGG + chr5.1:20947668-20947687 None:intergenic 20.0%
!!! TATTTTTGTTCTGAAATCTT+TGG - chr5.1:20947134-20947153 MS.gene036277:intron 20.0%
!!! TGTATTTCTTAATTTGTATG+CGG + chr5.1:20947583-20947602 None:intergenic 20.0%
!!! TTTACAATATTTGTTATGCA+GGG - chr5.1:20946491-20946510 MS.gene036277:intron 20.0%
!!! TTTTTCCTAAATGATCTTAT+AGG + chr5.1:20946859-20946878 None:intergenic 20.0%
! AAAAGTGAACTTGAATTTGA+AGG - chr5.1:20946212-20946231 MS.gene036277:intron 25.0%
! AAACACACCAATAGTTATTA+GGG + chr5.1:20947645-20947664 None:intergenic 25.0%
! AAACGACACTCATTTATAAA+CGG + chr5.1:20947553-20947572 None:intergenic 25.0%
! AAATACTACCTAACATTCAA+GGG - chr5.1:20948158-20948177 MS.gene036277:intron 25.0%
! AAATTTACCATATCAGGATT+AGG + chr5.1:20946801-20946820 None:intergenic 25.0%
! ATTGGCAAATTAGTATGAAT+GGG - chr5.1:20948808-20948827 MS.gene036277:intron 25.0%
! GTAAGATGTTCTTTAAATTC+TGG - chr5.1:20947316-20947335 MS.gene036277:intron 25.0%
! GTAAGTTTAATGCTAATTCA+GGG - chr5.1:20946513-20946532 MS.gene036277:intron 25.0%
! GTATCTTAAAACCAAGAAAA+TGG - chr5.1:20949394-20949413 MS.gene036277:CDS 25.0%
! TTACAGAACTATAATACTAG+AGG + chr5.1:20949328-20949347 None:intergenic 25.0%
!! ACTGTAAATCCATTTAAGAT+GGG + chr5.1:20948991-20949010 None:intergenic 25.0%
!! GTAAATTTTCATATGTGACA+GGG - chr5.1:20946813-20946832 MS.gene036277:intron 25.0%
!! TAAACTAATGCATTTGAGTT+GGG - chr5.1:20948729-20948748 MS.gene036277:CDS 25.0%
!!! AATGTATGTTCACTTTTCAA+TGG + chr5.1:20947742-20947761 None:intergenic 25.0%
!!! GTTTACAATATTTGTTATGC+AGG - chr5.1:20946490-20946509 MS.gene036277:intron 25.0%
!!! GTTTTGTTTTAGTGGTTTAA+TGG - chr5.1:20946466-20946485 MS.gene036277:intron 25.0%
!!! TTATAAATGAGTGTCGTTTA+AGG - chr5.1:20947554-20947573 MS.gene036277:intron 25.0%
!!! TTGATATTTTTTCAAGCAAG+TGG + chr5.1:20948491-20948510 None:intergenic 25.0%
AAACTACCCCTAATAACTAT+TGG - chr5.1:20947635-20947654 MS.gene036277:intron 30.0%
AACACACCAATAGTTATTAG+GGG + chr5.1:20947644-20947663 None:intergenic 30.0%
AATAAGTCAACCCAGAAATA+TGG + chr5.1:20947896-20947915 None:intergenic 30.0%
ACCAATTGATCCATATTTCT+GGG - chr5.1:20947883-20947902 MS.gene036277:intron 30.0%
AGAAGGCTGAAAATAATGAA+GGG - chr5.1:20949500-20949519 MS.gene036277:CDS 30.0%
AGAGATTGTCGTAATGTATA+TGG - chr5.1:20947819-20947838 MS.gene036277:intron 30.0%
AGATGTGATACCAAGTATAA+TGG - chr5.1:20948432-20948451 MS.gene036277:intron 30.0%
ATAGTTAGAATATGGGGATT+TGG - chr5.1:20948877-20948896 MS.gene036277:intron 30.0%
ATAGTTATTAGGGGTAGTTT+AGG + chr5.1:20947635-20947654 None:intergenic 30.0%
ATCATTTAGGAAAAACTCGA+TGG - chr5.1:20946864-20946883 MS.gene036277:intron 30.0%
CAAATACTACCTAACATTCA+AGG - chr5.1:20948157-20948176 MS.gene036277:intron 30.0%
CAATTTCCATGTATACTCAT+AGG - chr5.1:20948009-20948028 MS.gene036277:intron 30.0%
CACTGTAAATCCATTTAAGA+TGG + chr5.1:20948992-20949011 None:intergenic 30.0%
CATGCAATATCCATTATACT+TGG + chr5.1:20948445-20948464 None:intergenic 30.0%
CATTGGCAAATTAGTATGAA+TGG - chr5.1:20948807-20948826 MS.gene036277:intron 30.0%
CTAAACTAATGCATTTGAGT+TGG - chr5.1:20948728-20948747 MS.gene036277:CDS 30.0%
CTATGAGTATACATGGAAAT+TGG + chr5.1:20948011-20948030 None:intergenic 30.0%
CTCACTTATGAAGATAAAGA+TGG - chr5.1:20947260-20947279 MS.gene036277:intron 30.0%
CTGAACAAACATGTATGATT+TGG - chr5.1:20946755-20946774 MS.gene036277:intron 30.0%
CTTTGATTAAAATTCGCATG+CGG - chr5.1:20949192-20949211 MS.gene036277:CDS 30.0%
GAAACACACCAATAGTTATT+AGG + chr5.1:20947646-20947665 None:intergenic 30.0%
GGTAAGTTTAATGCTAATTC+AGG - chr5.1:20946512-20946531 MS.gene036277:intron 30.0%
TAGATATCCTAATCCTGATA+TGG - chr5.1:20946791-20946810 MS.gene036277:intron 30.0%
TCAACATACTCTCTTTGATT+GGG + chr5.1:20949272-20949291 None:intergenic 30.0%
TCATTCGTCAAATTAAGAGA+TGG - chr5.1:20948270-20948289 MS.gene036277:intron 30.0%
TGTACACAACATTCATTTGA+GGG - chr5.1:20947699-20947718 MS.gene036277:intron 30.0%
TTATCTGCTTCATAACACAT+TGG - chr5.1:20948776-20948795 MS.gene036277:intron 30.0%
TTCAACATACTCTCTTTGAT+TGG + chr5.1:20949273-20949292 None:intergenic 30.0%
TTCCTAAATGATCTTATAGG+AGG + chr5.1:20946856-20946875 None:intergenic 30.0%
TTGGCAAATTAGTATGAATG+GGG - chr5.1:20948809-20948828 MS.gene036277:intron 30.0%
! ATTCATTCAGTCCATTTTCT+TGG + chr5.1:20949408-20949427 None:intergenic 30.0%
! ATTTAAGATGGGAGAAACAA+AGG + chr5.1:20948980-20948999 None:intergenic 30.0%
! GATTTTACTTACTTAGATGC+CGG + chr5.1:20946689-20946708 None:intergenic 30.0%
! GGTAAATTTTCATATGTGAC+AGG - chr5.1:20946812-20946831 MS.gene036277:intron 30.0%
! TTCATAACACATTGGCTATA+TGG - chr5.1:20948784-20948803 MS.gene036277:intron 30.0%
! TTTGATGAAGTTGGTTTATG+CGG - chr5.1:20946431-20946450 MS.gene036277:intron 30.0%
! TTTGTTTCTCCCATCTTAAA+TGG - chr5.1:20948979-20948998 MS.gene036277:CDS 30.0%
! TTTTCTCATCACACAAACTT+GGG + chr5.1:20946194-20946213 None:intergenic 30.0%
! TTTTTCTCATCACACAAACT+TGG + chr5.1:20946195-20946214 None:intergenic 30.0%
!! ATATGGATCAATTGGTCTTT+CGG + chr5.1:20947879-20947898 None:intergenic 30.0%
!!! AAGTGCATGTTTTGTTTTAG+TGG - chr5.1:20946458-20946477 MS.gene036277:intron 30.0%
AAAAGACAGGAAGAAACCTA+AGG + chr5.1:20948574-20948593 None:intergenic 35.0%
AAATTAGTATGAATGGGGTG+CGG - chr5.1:20948814-20948833 MS.gene036277:intron 35.0%
AACAACAATGATGAAGTGGA+TGG - chr5.1:20946901-20946920 MS.gene036277:intron 35.0%
AACAAGAACCCTTGAATGTT+AGG + chr5.1:20948169-20948188 None:intergenic 35.0%
AATCTTTGGCGATTGTGTAA+TGG - chr5.1:20947148-20947167 MS.gene036277:intron 35.0%
AATGAGCTGAAGTTTCTTAG+AGG + chr5.1:20948926-20948945 None:intergenic 35.0%
ACCCAGAAATATGGATCAAT+TGG + chr5.1:20947887-20947906 None:intergenic 35.0%
ACTTGATGAAAATGTGAGGA+GGG - chr5.1:20948853-20948872 MS.gene036277:intron 35.0%
AGATCTACCTTCCTTAGATA+GGG + chr5.1:20946976-20946995 None:intergenic 35.0%
AGGAATTGCAATTTAGTGAG+TGG + chr5.1:20949448-20949467 None:intergenic 35.0%
AGGAGGGAATAGTTAGAATA+TGG - chr5.1:20948869-20948888 MS.gene036277:intron 35.0%
ATGAAGATAAAGATGGAGAC+TGG - chr5.1:20947267-20947286 MS.gene036277:intron 35.0%
ATGAGCTGAAGTTTCTTAGA+GGG + chr5.1:20948925-20948944 None:intergenic 35.0%
ATTAGGGGTAGTTTAGGAAA+AGG + chr5.1:20947629-20947648 None:intergenic 35.0%
ATTTACGGGCTTGTCTATTT+AGG - chr5.1:20949347-20949366 MS.gene036277:CDS 35.0%
CAAGAACAACAATGATGAAG+TGG - chr5.1:20946897-20946916 MS.gene036277:intron 35.0%
CAGAAGGCTGAAAATAATGA+AGG - chr5.1:20949499-20949518 MS.gene036277:CDS 35.0%
CATATTCTGAACCATGCAAA+AGG + chr5.1:20947238-20947257 None:intergenic 35.0%
CATGATCAAATTCTTCAGTC+TGG + chr5.1:20949110-20949129 None:intergenic 35.0%
GACACTCATTTATAAACGGA+AGG + chr5.1:20947549-20947568 None:intergenic 35.0%
GACCAATTGATCCATATTTC+TGG - chr5.1:20947882-20947901 MS.gene036277:intron 35.0%
GAGGGAATAGTTAGAATATG+GGG - chr5.1:20948871-20948890 MS.gene036277:intron 35.0%
GGAATTGCAATTTAGTGAGT+GGG + chr5.1:20949447-20949466 None:intergenic 35.0%
GGAGGGAATAGTTAGAATAT+GGG - chr5.1:20948870-20948889 MS.gene036277:intron 35.0%
GTGTACACAACATTCATTTG+AGG - chr5.1:20947698-20947717 MS.gene036277:intron 35.0%
TAAAGAACATCTTACTCCCA+TGG + chr5.1:20947311-20947330 None:intergenic 35.0%
TACTTGATGAAAATGTGAGG+AGG - chr5.1:20948852-20948871 MS.gene036277:intron 35.0%
TAGATCTACCTTCCTTAGAT+AGG + chr5.1:20946977-20946996 None:intergenic 35.0%
TCTATCAACTCAACTACTCA+AGG - chr5.1:20946707-20946726 MS.gene036277:intron 35.0%
TGAAGAATTTGATCATGACC+AGG - chr5.1:20949113-20949132 MS.gene036277:intron 35.0%
TGGACTGAATGAATGACATA+AGG - chr5.1:20949414-20949433 MS.gene036277:CDS 35.0%
TGTTCATTGATACTTGCAGA+AGG - chr5.1:20949483-20949502 MS.gene036277:CDS 35.0%
TTAGGGGTAGTTTAGGAAAA+GGG + chr5.1:20947628-20947647 None:intergenic 35.0%
TTTGCAGAAGAATGTGGTTT+CGG - chr5.1:20946356-20946375 MS.gene036277:intron 35.0%
! AAGGAGTACAAGTCTAATTC+TGG + chr5.1:20947530-20947549 None:intergenic 35.0%
! AATCCTGCTACAGAATTTTC+TGG - chr5.1:20948595-20948614 MS.gene036277:CDS 35.0%
! ATTGTTGTTCTTGGAAGCAT+TGG + chr5.1:20946890-20946909 None:intergenic 35.0%
! CACTTCATCATTGTTGTTCT+TGG + chr5.1:20946899-20946918 None:intergenic 35.0%
! CATCTTTTGCAGGAAGTAAA+GGG + chr5.1:20946335-20946354 None:intergenic 35.0%
! CATTCATTTGAGGGCATAAT+TGG - chr5.1:20947708-20947727 MS.gene036277:intron 35.0%
! TCACTCATCATTTCTTTTCC+TGG + chr5.1:20947200-20947219 None:intergenic 35.0%
! TCCTGAAATTTGCTCAACAT+GGG - chr5.1:20948200-20948219 MS.gene036277:intron 35.0%
! TTCCTGAAATTTGCTCAACA+TGG - chr5.1:20948199-20948218 MS.gene036277:intron 35.0%
! TTTTGCTGCATAATGTTGCT+GGG - chr5.1:20948700-20948719 MS.gene036277:CDS 35.0%
! TTTTTGCTGCATAATGTTGC+TGG - chr5.1:20948699-20948718 MS.gene036277:CDS 35.0%
!! ATGTTCAGCTGTTTTACTCT+AGG - chr5.1:20947042-20947061 MS.gene036277:intron 35.0%
!! CATTTGAGTTGGGACAAAAA+TGG - chr5.1:20948739-20948758 MS.gene036277:CDS 35.0%
!! GGTGATTAGTTTGATGAAGT+TGG - chr5.1:20946422-20946441 MS.gene036277:intron 35.0%
!! GTTTTTGCTGATGATGAAGT+TGG - chr5.1:20947102-20947121 MS.gene036277:intron 35.0%
!! TATGGATCAATTGGTCTTTC+GGG + chr5.1:20947878-20947897 None:intergenic 35.0%
!!! AGACACTCATTTTGAAACGA+AGG - chr5.1:20947792-20947811 MS.gene036277:intron 35.0%
!!! CTATTTTGCTTCTGAGACAA+TGG - chr5.1:20947388-20947407 MS.gene036277:intron 35.0%
!!! GACACTCATTTTGAAACGAA+GGG - chr5.1:20947793-20947812 MS.gene036277:intron 35.0%
!!! TGTTTTTTCATGCCAAACAG+CGG - chr5.1:20948110-20948129 MS.gene036277:intron 35.0%
AACAGCTGAACATCTTCTCA+AGG + chr5.1:20947035-20947054 None:intergenic 40.0%
AATATGGGACCCACGTAATA+TGG - chr5.1:20949226-20949245 MS.gene036277:CDS 40.0%
AATTAGTATGAATGGGGTGC+GGG - chr5.1:20948815-20948834 MS.gene036277:intron 40.0%
ACAGCTGAACATCTTCTCAA+GGG + chr5.1:20947034-20947053 None:intergenic 40.0%
ACCCATGTTGAGCAAATTTC+AGG + chr5.1:20948204-20948223 None:intergenic 40.0%
ACGATGGAACGGAATTACTT+GGG - chr5.1:20946126-20946145 MS.gene036277:intron 40.0%
AGGAACTACTGGTCATAATC+AGG - chr5.1:20946634-20946653 MS.gene036277:intron 40.0%
AGTGAAAGAAATGCCGAGTA+AGG - chr5.1:20946583-20946602 MS.gene036277:intron 40.0%
ATTGTCTGATTGTTCATCGG+TGG - chr5.1:20946149-20946168 MS.gene036277:intron 40.0%
ATTTGAAGGCTACTGAGTTG+AGG - chr5.1:20946226-20946245 MS.gene036277:intron 40.0%
CATATTCAGCAACACAATCC+TGG + chr5.1:20949134-20949153 None:intergenic 40.0%
CCTTTACTTCCTGCAAAAGA+TGG - chr5.1:20946333-20946352 MS.gene036277:intron 40.0%
CTTTCCTGCAAAACCTTACT+CGG + chr5.1:20946599-20946618 None:intergenic 40.0%
GCGGCCAACCAAAATAATAT+GGG - chr5.1:20949211-20949230 MS.gene036277:CDS 40.0%
GGCCTCCTATAAGATCATTT+AGG - chr5.1:20946851-20946870 MS.gene036277:intron 40.0%
GGGATTGTCTGATTGTTCAT+CGG - chr5.1:20946146-20946165 MS.gene036277:intron 40.0%
GGGTACTTGATGAAAATGTG+AGG - chr5.1:20948849-20948868 MS.gene036277:intron 40.0%
TAGAATATGGGGATTTGGCA+TGG - chr5.1:20948882-20948901 MS.gene036277:intron 40.0%
TAGCCAGAAAATTCTGTAGC+AGG + chr5.1:20948601-20948620 None:intergenic 40.0%
TGAGCTGAAGTTTCTTAGAG+GGG + chr5.1:20948924-20948943 None:intergenic 40.0%
TGAGTGCCTATGAGTATACA+TGG + chr5.1:20948018-20948037 None:intergenic 40.0%
TGCGGCCAACCAAAATAATA+TGG - chr5.1:20949210-20949229 MS.gene036277:CDS 40.0%
TGTAGCAGGATTGAAAAGAC+AGG + chr5.1:20948587-20948606 None:intergenic 40.0%
TGTTGTGTACACTACTTCGA+AGG + chr5.1:20947690-20947709 None:intergenic 40.0%
TTGCAGAAGAATGTGGTTTC+GGG - chr5.1:20946357-20946376 MS.gene036277:intron 40.0%
! ACACATTGGCTATATGGCAT+TGG - chr5.1:20948790-20948809 MS.gene036277:intron 40.0%
! ACGTGGGTCCCATATTATTT+TGG + chr5.1:20949222-20949241 None:intergenic 40.0%
! AGATGGTTTGCAGAAGAATG+TGG - chr5.1:20946350-20946369 MS.gene036277:intron 40.0%
! CCATCTTTTGCAGGAAGTAA+AGG + chr5.1:20946336-20946355 None:intergenic 40.0%
! TTCTGCAAACCATCTTTTGC+AGG + chr5.1:20946345-20946364 None:intergenic 40.0%
!! ATATTGTTGGGTTGAGTCTC+AGG - chr5.1:20947972-20947991 MS.gene036277:intron 40.0%
!! GATTTGCTGATACCGTTGAT+GGG - chr5.1:20946391-20946410 MS.gene036277:intron 40.0%
!!! GGGTCCCATATTATTTTGGT+TGG + chr5.1:20949218-20949237 None:intergenic 40.0%
AAATTAGGGGGCTCATGTCA+TGG - chr5.1:20948351-20948370 MS.gene036277:CDS 45.0%
AATATGGGGATTTGGCATGG+AGG - chr5.1:20948885-20948904 MS.gene036277:intron 45.0%
ACTACTGGTCATAATCAGGC+AGG - chr5.1:20946638-20946657 MS.gene036277:intron 45.0%
ACTCTTTGTGAAGGTCAGCA+TGG - chr5.1:20946942-20946961 MS.gene036277:intron 45.0%
ACTTGTCCCACCATATTACG+TGG + chr5.1:20949239-20949258 None:intergenic 45.0%
ATATGGGGATTTGGCATGGA+GGG - chr5.1:20948886-20948905 MS.gene036277:intron 45.0%
ATCCGAATCCATTTCCCTCT+CGG + chr5.1:20946277-20946296 None:intergenic 45.0%
ATGCGCCCATTAGTTGTTCT+CGG + chr5.1:20948380-20948399 None:intergenic 45.0%
ATGGAGACTGGATGCTTGTA+GGG - chr5.1:20947279-20947298 MS.gene036277:intron 45.0%
ATTAGTATGAATGGGGTGCG+GGG - chr5.1:20948816-20948835 MS.gene036277:intron 45.0%
CTCATAGGCACTCACATTTG+TGG - chr5.1:20948024-20948043 MS.gene036277:intron 45.0%
CTTGTCCCACCATATTACGT+GGG + chr5.1:20949238-20949257 None:intergenic 45.0%
GAACATCCTGCACATGCATA+AGG + chr5.1:20949468-20949487 None:intergenic 45.0%
GACGATGGAACGGAATTACT+TGG - chr5.1:20946125-20946144 MS.gene036277:intron 45.0%
GATATCATACCACCGCTGTT+TGG + chr5.1:20948125-20948144 None:intergenic 45.0%
GATGAAGTGGATGGAAAACC+AGG - chr5.1:20946910-20946929 MS.gene036277:intron 45.0%
GCAATTCCTTATGCATGTGC+AGG - chr5.1:20949459-20949478 MS.gene036277:CDS 45.0%
GCAGGAAGTAAAGGGAACAA+TGG + chr5.1:20946327-20946346 None:intergenic 45.0%
GGCTACCGAGAACAACTAAT+GGG - chr5.1:20948372-20948391 MS.gene036277:CDS 45.0%
GTGTCTGTTCTTTGAGTGCT+AGG - chr5.1:20948070-20948089 MS.gene036277:intron 45.0%
GTTCAGCATGCACTATCCTT+AGG - chr5.1:20948555-20948574 MS.gene036277:CDS 45.0%
TGCAGAAGAATGTGGTTTCG+GGG - chr5.1:20946358-20946377 MS.gene036277:intron 45.0%
TGGCTACCGAGAACAACTAA+TGG - chr5.1:20948371-20948390 MS.gene036277:CDS 45.0%
TTTGGCGATTGTGTAATGGC+AGG - chr5.1:20947152-20947171 MS.gene036277:intron 45.0%
TTTGTGAAGGTCAGCATGGA+TGG - chr5.1:20946946-20946965 MS.gene036277:intron 45.0%
! AAGGCTACTGAGTTGAGGTT+GGG - chr5.1:20946231-20946250 MS.gene036277:intron 45.0%
! AATGCCGAGTAAGGTTTTGC+AGG - chr5.1:20946592-20946611 MS.gene036277:intron 45.0%
! ACCTTCACAAAGAGTGCAGT+GGG + chr5.1:20946937-20946956 None:intergenic 45.0%
! CGAGTAAGGTTTTGCAGGAA+AGG - chr5.1:20946597-20946616 MS.gene036277:intron 45.0%
! TTCTTTTCCTGGAGCTCCAT+GGG + chr5.1:20947189-20947208 None:intergenic 45.0%
! TTTCTTTTCCTGGAGCTCCA+TGG + chr5.1:20947190-20947209 None:intergenic 45.0%
! TTTTTCATGCCAAACAGCGG+TGG - chr5.1:20948113-20948132 MS.gene036277:intron 45.0%
!! GGATTTGCTGATACCGTTGA+TGG - chr5.1:20946390-20946409 MS.gene036277:intron 45.0%
AACTGTCGTCGACGATGGAA+CGG - chr5.1:20946115-20946134 MS.gene036277:intron 50.0%
ACAGGGCACAAGTTGTTGGT+TGG - chr5.1:20946830-20946849 MS.gene036277:intron 50.0%
ATGGGACCCACGTAATATGG+TGG - chr5.1:20949229-20949248 MS.gene036277:CDS 50.0%
CACCTGCGAAAACCCATCAA+CGG + chr5.1:20946406-20946425 None:intergenic 50.0%
GATGAGTGAGAGCAAGCTGA+GGG - chr5.1:20947211-20947230 MS.gene036277:intron 50.0%
GATGGAGACTGGATGCTTGT+AGG - chr5.1:20947278-20947297 MS.gene036277:intron 50.0%
GGGTTGAGTCTCAGGTTTAC+TGG - chr5.1:20947980-20947999 MS.gene036277:intron 50.0%
GTAGTTCCTCTAGCTGCACA+AGG + chr5.1:20946623-20946642 None:intergenic 50.0%
GTGGTTTCGGGGAATAAGAG+AGG - chr5.1:20946369-20946388 MS.gene036277:intron 50.0%
TCAATCACCCGAGAGGGAAA+TGG - chr5.1:20946266-20946285 MS.gene036277:intron 50.0%
TCCAAGGGGGACATACAAGT+AGG + chr5.1:20947852-20947871 None:intergenic 50.0%
TCCCACTGCACTCTTTGTGA+AGG - chr5.1:20946933-20946952 MS.gene036277:intron 50.0%
TCCGAATCCATTTCCCTCTC+GGG + chr5.1:20946276-20946295 None:intergenic 50.0%
TCCTACTTGTATGTCCCCCT+TGG - chr5.1:20947848-20947867 MS.gene036277:intron 50.0%
TGATGAGTGAGAGCAAGCTG+AGG - chr5.1:20947210-20947229 MS.gene036277:intron 50.0%
TGGAGACTGGATGCTTGTAG+GGG - chr5.1:20947280-20947299 MS.gene036277:intron 50.0%
TGGATGGTGCTCCCTATCTA+AGG - chr5.1:20946962-20946981 MS.gene036277:intron 50.0%
TGGGACCCACGTAATATGGT+GGG - chr5.1:20949230-20949249 MS.gene036277:CDS 50.0%
TGGTCTTTCGGGACTTCCAA+GGG + chr5.1:20947867-20947886 None:intergenic 50.0%
TGGTGCTCCCTATCTAAGGA+AGG - chr5.1:20946966-20946985 MS.gene036277:intron 50.0%
TGTGACAGGGCACAAGTTGT+TGG - chr5.1:20946826-20946845 MS.gene036277:intron 50.0%
TGTGCAGCTAGAGGAACTAC+TGG - chr5.1:20946623-20946642 MS.gene036277:intron 50.0%
! AAGCTGAGGGACCTTTTGCA+TGG - chr5.1:20947224-20947243 MS.gene036277:intron 50.0%
! ACCCGAGAGGGAAATGGATT+CGG - chr5.1:20946272-20946291 MS.gene036277:intron 50.0%
! ATGAAGGGTTCTGACGCCAT+TGG - chr5.1:20949515-20949534 MS.gene036277:CDS 50.0%
! GAAGGCTACTGAGTTGAGGT+TGG - chr5.1:20946230-20946249 MS.gene036277:intron 50.0%
! GACCTTCACAAAGAGTGCAG+TGG + chr5.1:20946938-20946957 None:intergenic 50.0%
! TGAAGGGTTCTGACGCCATT+GGG - chr5.1:20949516-20949535 MS.gene036277:CDS 50.0%
! TTCTATCGCTGGTTGTGCAC+CGG - chr5.1:20946667-20946686 MS.gene036277:intron 50.0%
! TTGGTCTTTCGGGACTTCCA+AGG + chr5.1:20947868-20947887 None:intergenic 50.0%
!!! TACCGTTGATGGGTTTTCGC+AGG - chr5.1:20946401-20946420 MS.gene036277:intron 50.0%
ATGCTATCGCCTAGACCTGG+TGG - chr5.1:20946545-20946564 MS.gene036277:intron 55.0%
CCTCTCGGGTGATTGAGATC+CGG + chr5.1:20946262-20946281 None:intergenic 55.0%
CGGATCTCAATCACCCGAGA+GGG - chr5.1:20946260-20946279 MS.gene036277:intron 55.0%
CTCTCGGGTGATTGAGATCC+GGG + chr5.1:20946261-20946280 None:intergenic 55.0%
GAGTTGAGGTTGGGTCTTCC+CGG - chr5.1:20946240-20946259 MS.gene036277:intron 55.0%
GCTTGTAGGGGACGTACCAT+GGG - chr5.1:20947292-20947311 MS.gene036277:intron 55.0%
GGTCTTTCGGGACTTCCAAG+GGG + chr5.1:20947866-20947885 None:intergenic 55.0%
GTCTTTCGGGACTTCCAAGG+GGG + chr5.1:20947865-20947884 None:intergenic 55.0%
GTGATGCTATCGCCTAGACC+TGG - chr5.1:20946542-20946561 MS.gene036277:intron 55.0%
TGCTTGTAGGGGACGTACCA+TGG - chr5.1:20947291-20947310 MS.gene036277:intron 55.0%
TGTGTAATGGCAGGCCAGTG+TGG - chr5.1:20947161-20947180 MS.gene036277:intron 55.0%
! ACAAAGAGTGCAGTGGGACC+TGG + chr5.1:20946931-20946950 None:intergenic 55.0%
! GAAAGGCCTTGTGCAGCTAG+AGG - chr5.1:20946614-20946633 MS.gene036277:intron 55.0%
CCGGATCTCAATCACCCGAG+AGG - chr5.1:20946259-20946278 MS.gene036277:intron 60.0%
GAGCTCCATGGGAACCACAC+TGG + chr5.1:20947178-20947197 None:intergenic 60.0%
GCGCAAACTGTCGTCGACGA+TGG - chr5.1:20946110-20946129 MS.gene036277:CDS 60.0%
GGGGTGCGGGGAATTCAGTA+GGG - chr5.1:20948828-20948847 MS.gene036277:intron 60.0%
GGGTGCGGGGAATTCAGTAG+GGG - chr5.1:20948829-20948848 MS.gene036277:intron 60.0%
TGGGGTGCGGGGAATTCAGT+AGG - chr5.1:20948827-20948846 MS.gene036277:intron 60.0%
TGTGGTTCCCATGGAGCTCC+AGG - chr5.1:20947179-20947198 MS.gene036277:intron 60.0%
!! GCAGGTGCTGCTTCTATCGC+TGG - chr5.1:20946656-20946675 MS.gene036277:intron 60.0%
CGGTGGCTACGGAGGAGGAA+GGG - chr5.1:20946085-20946104 MS.gene036277:CDS 65.0%
GCAGGCCAGTGTGGTTCCCA+TGG - chr5.1:20947170-20947189 MS.gene036277:intron 65.0%
GCCTAGACCTGGTGGAGCTC+AGG - chr5.1:20946553-20946572 MS.gene036277:intron 65.0%
GCCTGAGCTCCACCAGGTCT+AGG + chr5.1:20946557-20946576 None:intergenic 65.0%
TGGCTACGGAGGAGGAAGGG+CGG - chr5.1:20946088-20946107 MS.gene036277:CDS 65.0%
GCGGTGGCTACGGAGGAGGA+AGG - chr5.1:20946084-20946103 MS.gene036277:CDS 70.0%
GTCTCCGACGGCGGTGGCTA+CGG - chr5.1:20946074-20946093 MS.gene036277:CDS 70.0%
GTGCTCGCCTGAGCTCCACC+AGG + chr5.1:20946563-20946582 None:intergenic 70.0%
TCCTCCGTAGCCACCGCCGT+CGG + chr5.1:20946081-20946100 None:intergenic 70.0%
GACGGCGGTGGCTACGGAGG+AGG - chr5.1:20946080-20946099 MS.gene036277:CDS 75.0%
TCCGACGGCGGTGGCTACGG+AGG - chr5.1:20946077-20946096 MS.gene036277:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 20946072 20949542 20946072 ID=MS.gene036277
chr5.1 mRNA 20946072 20949542 20946072 ID=MS.gene036277.t1;Parent=MS.gene036277
chr5.1 exon 20949192 20949542 20949192 ID=MS.gene036277.t1.exon1;Parent=MS.gene036277.t1
chr5.1 CDS 20949192 20949542 20949192 ID=cds.MS.gene036277.t1;Parent=MS.gene036277.t1
chr5.1 exon 20948918 20949102 20948918 ID=MS.gene036277.t1.exon2;Parent=MS.gene036277.t1
chr5.1 CDS 20948918 20949102 20948918 ID=cds.MS.gene036277.t1;Parent=MS.gene036277.t1
chr5.1 exon 20948551 20948780 20948551 ID=MS.gene036277.t1.exon3;Parent=MS.gene036277.t1
chr5.1 CDS 20948551 20948780 20948551 ID=cds.MS.gene036277.t1;Parent=MS.gene036277.t1
chr5.1 exon 20948299 20948440 20948299 ID=MS.gene036277.t1.exon4;Parent=MS.gene036277.t1
chr5.1 CDS 20948299 20948440 20948299 ID=cds.MS.gene036277.t1;Parent=MS.gene036277.t1
chr5.1 exon 20946072 20946133 20946072 ID=MS.gene036277.t1.exon5;Parent=MS.gene036277.t1
chr5.1 CDS 20946072 20946133 20946072 ID=cds.MS.gene036277.t1;Parent=MS.gene036277.t1
Gene Sequence

>MS.gene036277

ATGTCTCCGACGGCGGTGGCTACGGAGGAGGAAGGGCGGCGCAAACTGTCGTCGACGATGGAACGGAATTACTTGGGATTGTCTGATTGTTCATCGGTGGATAGTTGTGATTCAACTCTCCCAAGTTTGTGTGATGAGAAAAAAGTGAACTTGAATTTGAAGGCTACTGAGTTGAGGTTGGGTCTTCCCGGATCTCAATCACCCGAGAGGGAAATGGATTCGGATTTTTACGTAACAAAGCTTGATGAGAAACCATTGTTCCCTTTACTTCCTGCAAAAGATGGTTTGCAGAAGAATGTGGTTTCGGGGAATAAGAGAGGATTTGCTGATACCGTTGATGGGTTTTCGCAGGTGATTAGTTTGATGAAGTTGGTTTATGCGGTGAGAAGTGCATGTTTTGTTTTAGTGGTTTAATGGTGTTTACAATATTTGTTATGCAGGGTAAGTTTAATGCTAATTCAGGGATTAACGTGATGCTATCGCCTAGACCTGGTGGAGCTCAGGCGAGCACAGTGAAAGAAATGCCGAGTAAGGTTTTGCAGGAAAGGCCTTGTGCAGCTAGAGGAACTACTGGTCATAATCAGGCAGGTGCTGCTTCTATCGCTGGTTGTGCACCGGCATCTAAGTAAGTAAAATCTATCAACTCAACTACTCAAGGATCTTAATTTACACAAGACTAGTAGCTGAACAAACATGTATGATTTGGTTTTTTGTGTTTCTAGATATCCTAATCCTGATATGGTAAATTTTCATATGTGACAGGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCGATGGCCAATGCTTCCAAGAACAACAATGATGAAGTGGATGGAAAACCAGGTCCCACTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTAAGGAAGGTAGATCTAAGAACTTATACAACATATCAGCAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACTCTAGGTGAGTTGTTATTTTAATTTATTTTAACAATAAAATTTGTTTTTGCTGATGATGAAGTTGGTTGTTGCTTTATTTTTGTTCTGAAATCTTTGGCGATTGTGTAATGGCAGGCCAGTGTGGTTCCCATGGAGCTCCAGGAAAAGAAATGATGAGTGAGAGCAAGCTGAGGGACCTTTTGCATGGTTCAGAATATGTTCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGACGTACCATGGGAGTAAGATGTTCTTTAAATTCTGGTTTTTGCATCTTTGTTTTCTCGCTATATTTTTTCACGTAATAGTAGTCTCTATTTTGCTTCTGAGACAATGGAGTAAATGCTTTTGCAAATATATAGTCTAAAAAAGTAAGTAATCATAATGATCAGCAATAATTGATTGATTTTGTAATTAATAAGTAATTGTAAGTCATAATGATCATTTGAGAGTCCAGAATTAGACTTGTACTCCTTCCGTTTATAAATGAGTGTCGTTTAAGGTTTCCGCATACAAATTAAGAAATACAAAAAGGTTGTCAAAAGACATAACCCTTTTCCTAAACTACCCCTAATAACTATTGGTGTGTTTCCTACAAAAGTAGAATATATTACCTTCGAAGTAGTGTACACAACATTCATTTGAGGGCATAATTGGAAAAGTTTCCATTGAAAAGTGAACATACATTCATTTTGAAACAATTTTTTTTTCTCTAAAGAGACACTCATTTTGAAACGAAGGGATTAGAGATTGTCGTAATGTATATGGAGCGAGTCCTACTTGTATGTCCCCCTTGGAAGTCCCGAAAGACCAATTGATCCATATTTCTGGGTTGACTTATTTTCTTCTACTTTCTACTTAAATCAATTTGCAAATTGAGACTATATCTTATATACAAATATTGTTGGGTTGAGTCTCAGGTTTACTGGTTAATCCAATTTCCATGTATACTCATAGGCACTCACATTTGTGGTTTAGAAGATTAATTAATTGCTTGTGTCTGTTCTTTGAGTGCTAGGTCTAGTGATCAATCATATGTTTTTTCATGCCAAACAGCGGTGGTATGATATCACTTTTATTTTTCAAATACTACCTAACATTCAAGGGTTCTTGTTTTATTAGTGATTCCTGAAATTTGCTCAACATGGGTAAGCACTAATATTACTCAATTTGATTCAAAATATTATGATAAAAGATCATTCGTCAAATTAAGAGATGGATATAGTGAATCGAGAAAGTTAATACTGCAAATAATTGAACTTGTAATTTTTAATCGAAAATTAGGGGGCTCATGTCATGGCTACCGAGAACAACTAATGGGCGCATAACATATTACAGATGCGAATTATAATTTTGACAGATGTGATACCAAGTATAATGGATATTGCATGCAATTGCTCATCTAAGTAACTTGCCACTTGCTTGAAAAAATATCAAGAAAATTTTCCCTTTTTAGAAAGCAAAGTTATTTTGAAATCACAGTTCAGCATGCACTATCCTTAGGTTTCTTCCTGTCTTTTCAATCCTGCTACAGAATTTTCTGGCTAATTCAATATATTTAAAAGTGTGAATCAATTCAATGTATTGAAGTGTATTTTGATTTTTGAATGTTGTTATTTTTGTCTTTTTTGCTGCATAATGTTGCTGGGATGTACTAAACTAATGCATTTGAGTTGGGACAAAAATGGAATATTGTAGATAATTATCTGCTTCATAACACATTGGCTATATGGCATTGGCAAATTAGTATGAATGGGGTGCGGGGAATTCAGTAGGGGTACTTGATGAAAATGTGAGGAGGGAATAGTTAGAATATGGGGATTTGGCATGGAGGGTGCATGTGCATGCCCCTCTAAGAAACTTCAGCTCATTTTTATTAAAAATAAAAATAAAAAATTCTTGTCCTTTGTTTCTCCCATCTTAAATGGATTTACAGTGTTTTTGTGTTCTGTAATGTGTCTATCTATATTTTTTTTGAAGAAATTCAGGTTCTAATCGAAGTGTCGTGTATGCTATGACTTGTTCATTAGTATCCAGACTGAAGAATTTGATCATGACCAGGATTGTGTTGCTGAATATGATTATTAATAATGCTAGCAACACACTTTTCAACACACTCTTTGATTAAAATTCGCATGCGGCCAACCAAAATAATATGGGACCCACGTAATATGGTGGGACAAGTGTGAATTTTACCCAATCAAAGAGAGTATGTTGAAAAGTGTGAGTGTGTTGCTAGCATAGTAGCACTCCTCTAGTATTATAGTTCTGTAATTTACGGGCTTGTCTATTTAGGCATTAAGTGTTGATGCAAATTCTAGTATCTTAAAACCAAGAAAATGGACTGAATGAATGACATAAGGTTTGCATCCCACTCACTAAATTGCAATTCCTTATGCATGTGCAGGATGTTCATTGATACTTGCAGAAGGCTGAAAATAATGAAGGGTTCTGACGCCATTGGGTTAG

Protein sequence

>MS.gene036277.t1

MSPTAVATEEEGRRKLSSTMERNYLGLSDCSSVDSCDSTLPSLCDEKKVNLNLKATELRLGLPGSQSPEREMDSDFYVTKLDEKPLFPLLPAKDGLQKNVVSGNKRGFADTVDGFSQGKFNANSGINVMLSPRPGGAQASTVKEMPSKVLQERPCAARGTTGHNQAGAASIAGCAPASKAQVVGWPPIRSFRKNSMANASKNNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRTYTTYQQLSSALEKMFSCFTLGQCGSHGAPGKEMMSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLKIMKGSDAIGL