AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061505

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061505.t1 MTR_6g488150 91.188 261 16 2 1 261 1 254 8.22e-176 484
MS.gene061505.t1 MTR_8g103030 63.251 283 57 7 14 261 23 293 9.84e-112 323
MS.gene061505.t1 MTR_6g488150 87.500 184 16 2 1 184 1 177 2.26e-111 319
MS.gene061505.t1 MTR_8g067530 55.862 290 93 6 7 261 67 356 6.69e-98 291
MS.gene061505.t1 MTR_5g030710 54.895 286 89 7 15 261 51 335 1.12e-96 287
MS.gene061505.t1 MTR_2g101500 51.299 308 93 7 10 261 20 326 1.73e-90 271
MS.gene061505.t1 MTR_5g067350 52.525 297 93 10 7 261 57 347 5.51e-87 263
MS.gene061505.t1 MTR_1g093240 50.973 257 92 6 13 261 6 236 6.61e-76 230
MS.gene061505.t1 MTR_1g080860 49.035 259 98 6 15 260 15 252 1.39e-71 220
MS.gene061505.t1 MTR_1g093240 49.388 245 90 6 13 249 6 224 8.61e-67 207
MS.gene061505.t1 MTR_1g070520 63.354 161 54 2 105 261 86 245 7.33e-66 205
MS.gene061505.t1 MTR_7g096090 61.783 157 58 1 105 261 96 250 4.27e-65 203
MS.gene061505.t1 MTR_1g080860 47.390 249 97 6 15 250 15 242 9.85e-64 199
MS.gene061505.t1 MTR_1g093240 45.333 225 89 6 13 229 6 204 4.71e-54 174
MS.gene061505.t1 MTR_1g070830 42.373 236 91 6 15 250 12 202 2.89e-52 169
MS.gene061505.t1 MTR_1g040675 42.437 238 80 8 15 250 1 183 4.25e-51 166
MS.gene061505.t1 MTR_1g076270 42.616 237 69 6 13 249 9 178 5.10e-50 162
MS.gene061505.t1 MTR_1g093350 42.616 237 69 6 13 249 9 178 5.10e-50 162
MS.gene061505.t1 MTR_5g067350 46.119 219 73 11 7 183 57 272 3.99e-40 140
MS.gene061505.t1 MTR_1g040675 39.631 217 74 8 15 229 1 162 8.55e-40 135
MS.gene061505.t1 MTR_1g069495 43.407 182 70 4 108 256 82 263 1.51e-38 136
MS.gene061505.t1 MTR_2g100780 37.652 247 122 9 21 245 18 254 5.31e-36 129
MS.gene061505.t1 MTR_2g100780 37.652 247 122 9 21 245 18 254 6.08e-36 129
MS.gene061505.t1 MTR_4g011880 50.000 150 44 4 106 253 52 172 5.26e-34 121
MS.gene061505.t1 MTR_8g014520 32.721 272 134 7 9 245 3 260 1.22e-32 120
MS.gene061505.t1 MTR_8g014520 32.721 272 134 7 9 245 3 260 1.23e-32 120
MS.gene061505.t1 MTR_2g102490 54.717 106 38 3 141 244 86 183 4.23e-32 117
MS.gene061505.t1 MTR_3g106850 31.056 161 79 6 94 245 72 209 1.03e-18 82.4
MS.gene061505.t1 MTR_4g124300 36.879 141 62 5 105 244 68 182 2.11e-18 80.9
MS.gene061505.t1 MTR_7g110790 36.434 129 64 3 114 242 45 155 9.10e-18 78.6
MS.gene061505.t1 MTR_1g085750 34.532 139 74 3 104 242 49 170 1.84e-16 75.5
MS.gene061505.t1 MTR_4g115075 29.452 146 66 3 106 243 90 206 1.14e-14 71.2
MS.gene061505.t1 MTR_1g109510 34.483 145 73 5 101 242 43 168 4.39e-13 66.2
MS.gene061505.t1 MTR_1g085750 32.540 126 68 3 104 229 49 157 6.02e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061505.t1 AT4G29080 61.189 286 77 9 4 261 26 305 9.07e-104 304
MS.gene061505.t1 AT2G22670 50.549 273 107 7 15 260 47 318 2.94e-83 252
MS.gene061505.t1 AT2G22670 50.549 273 107 7 15 260 47 318 2.94e-83 252
MS.gene061505.t1 AT2G22670 50.549 273 107 7 15 260 64 335 4.30e-83 252
MS.gene061505.t1 AT5G65670 50.545 275 107 3 15 260 61 335 5.92e-82 249
MS.gene061505.t1 AT5G65670 50.181 277 107 4 15 260 61 337 4.79e-80 244
MS.gene061505.t1 AT2G22670 49.817 273 107 8 15 260 47 316 7.54e-80 243
MS.gene061505.t1 AT2G22670 49.817 273 107 8 15 260 47 316 7.54e-80 243
MS.gene061505.t1 AT3G04730 48.855 262 92 7 15 261 2 236 2.92e-75 229
MS.gene061505.t1 AT4G14550 50.397 252 96 7 15 261 1 228 6.52e-74 225
MS.gene061505.t1 AT3G23050 49.425 261 95 8 15 261 6 243 5.25e-72 221
MS.gene061505.t1 AT1G04250 46.457 254 96 8 15 260 7 228 2.23e-69 214
MS.gene061505.t1 AT4G14550 48.548 241 95 6 15 250 1 217 1.45e-66 206
MS.gene061505.t1 AT4G14550 46.119 219 89 7 15 228 1 195 2.83e-53 171
MS.gene061505.t1 AT3G23050 45.175 228 89 7 15 229 6 210 1.19e-51 167
MS.gene061505.t1 AT1G04240 44.068 236 78 8 15 250 5 186 1.65e-49 161
MS.gene061505.t1 AT1G04240 42.742 248 88 8 3 250 93 286 1.32e-48 162
MS.gene061505.t1 AT5G43700 39.831 236 78 6 15 250 11 182 8.34e-46 152
MS.gene061505.t1 AT3G23030 41.350 237 66 7 13 249 7 170 4.75e-42 142
MS.gene061505.t1 AT1G52830 38.750 240 91 9 11 250 2 185 1.53e-41 141
MS.gene061505.t1 AT3G15540 40.244 246 91 9 14 256 5 197 2.18e-41 141
MS.gene061505.t1 AT3G23030 41.350 237 66 7 13 249 94 257 3.89e-41 142
MS.gene061505.t1 AT4G14560 41.702 235 63 7 12 246 4 164 1.14e-39 135
MS.gene061505.t1 AT4G28640 44.512 164 71 4 103 250 83 242 2.84e-37 132
MS.gene061505.t1 AT1G04550 44.633 177 66 6 108 261 69 236 3.00e-37 131
MS.gene061505.t1 AT2G33310 45.562 169 64 5 108 255 75 236 5.39e-37 131
MS.gene061505.t1 AT2G33310 45.562 169 64 5 108 255 75 236 5.39e-37 131
MS.gene061505.t1 AT2G33310 45.562 169 64 5 108 255 76 237 5.77e-37 131
MS.gene061505.t1 AT4G28640 44.444 162 70 4 103 248 83 240 6.36e-37 131
MS.gene061505.t1 AT3G16500 36.863 255 118 9 7 245 25 252 5.56e-36 129
MS.gene061505.t1 AT3G16500 36.863 255 118 9 7 245 25 252 6.68e-36 129
MS.gene061505.t1 AT1G15580 34.764 233 74 4 12 244 5 159 8.36e-36 125
MS.gene061505.t1 AT4G28640 45.399 163 67 5 103 248 83 240 1.02e-35 129
MS.gene061505.t1 AT1G04100 36.994 173 80 4 105 250 90 260 3.63e-31 116
MS.gene061505.t1 AT1G51950 40.588 170 76 4 97 245 85 250 5.24e-31 116
MS.gene061505.t1 AT4G14550 41.279 172 74 5 15 181 1 150 4.94e-30 111
MS.gene061505.t1 AT3G23050 40.437 183 75 6 15 184 6 167 2.14e-29 109
MS.gene061505.t1 AT5G25890 37.500 144 68 3 109 252 49 170 3.44e-28 106
MS.gene061505.t1 AT3G17600 37.857 140 63 4 103 242 39 154 2.93e-22 90.5
MS.gene061505.t1 AT3G62100 38.462 104 49 1 140 243 81 169 1.02e-18 81.3
MS.gene061505.t1 AT2G46990 37.143 105 51 1 140 244 83 172 1.95e-18 80.9
MS.gene061505.t1 AT4G32280 25.366 205 93 7 86 257 72 249 5.65e-15 72.8
MS.gene061505.t1 AT4G32280 32.759 116 52 3 142 257 118 207 3.30e-14 70.1
MS.gene061505.t1 AT1G15050 33.582 134 70 4 115 247 35 150 9.00e-14 67.4
MS.gene061505.t1 AT3G62100 37.778 90 41 1 140 229 81 155 1.64e-13 67.0
MS.gene061505.t1 AT2G46990 37.778 90 41 1 140 229 83 157 1.68e-13 67.0
MS.gene061505.t1 AT1G15050 33.582 134 70 4 115 247 67 182 1.83e-13 67.4
MS.gene061505.t1 AT2G01200 34.711 121 63 2 127 247 84 188 4.51e-13 66.6
MS.gene061505.t1 AT2G01200 34.711 121 63 2 127 247 84 188 4.51e-13 66.6

Find 47 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATAAAGGCATCCAAATT+TGG 0.170065 6.1:-76912861 None:intergenic
TACTCTTTATGCATGCTTAA+TGG 0.190958 6.1:+76911701 MS.gene061505:CDS
AGATCCACTTTCCTTAAGTA+TGG 0.219333 6.1:-76912905 None:intergenic
GGCCACCAATCCGTTCTTTC+AGG 0.268848 6.1:+76912786 MS.gene061505:CDS
GATGATGTAGAAGCCAAATT+TGG 0.307716 6.1:+76912848 MS.gene061505:CDS
ATGAAAAGTGTAGGTCAATT+TGG 0.319033 6.1:+76913422 MS.gene061505:intron
TTGACTCTTGCAAGAGGTTA+AGG 0.334728 6.1:+76913973 MS.gene061505:CDS
AGTTCTGAAGCAATTGGATT+AGG 0.360095 6.1:+76914005 MS.gene061505:CDS
TTTGTGTGAAAGTAGATTGA+TGG 0.380197 6.1:+76913472 MS.gene061505:CDS
CCTTCACAACAGAACCTTGT+TGG 0.383043 6.1:-76911793 None:intergenic
ATGAAAAGTTCTGAAGCAAT+TGG 0.388635 6.1:+76913999 MS.gene061505:CDS
AAGAAGAAGTCTCAGATATA+TGG 0.397635 6.1:+76911851 MS.gene061505:CDS
CACAACAGAACCTTGTTGGT+TGG 0.401071 6.1:-76911789 None:intergenic
ATCACCATCTTTATCTTCAT+AGG 0.403740 6.1:-76913525 None:intergenic
TGATCTAGGGAACAAATTGT+AGG 0.417413 6.1:+76912761 MS.gene061505:intron
TTTCTTCAAACCAATTTCAA+TGG 0.423741 6.1:-76911759 None:intergenic
CTCTCTGGTGATTCAGAACC+AGG 0.434581 6.1:-76911647 None:intergenic
AGATTGATGGATCTCCTTCA+TGG 0.440946 6.1:+76913485 MS.gene061505:CDS
GTAGGTCAATTTGGCTCTCA+TGG 0.457514 6.1:+76913431 MS.gene061505:intron
TGGATGGTGCCCCATACTTA+AGG 0.465431 6.1:+76912894 MS.gene061505:CDS
GACTTCTTCTTCTCATTCAA+AGG 0.481249 6.1:-76911839 None:intergenic
TTCTTTCAGGAAGAATTCAA+TGG 0.488415 6.1:+76912799 MS.gene061505:CDS
AGAAGATCATTATCTCTCTC+TGG 0.489102 6.1:-76911662 None:intergenic
ATGAAGATAAAGATGGTGAT+TGG 0.490100 6.1:+76913528 MS.gene061505:CDS
TATGTAAAAGTTAGCATGGA+TGG 0.496315 6.1:+76912878 MS.gene061505:CDS
GAGTTAAGACTTGGTTTACC+TGG 0.509603 6.1:+76911629 MS.gene061505:CDS
TTGAATTCTTCCTGAAAGAA+CGG 0.519997 6.1:-76912796 None:intergenic
AAAATATGCACTTACTTCCA+TGG 0.525031 6.1:-76913569 None:intergenic
GATCCACTTTCCTTAAGTAT+GGG 0.525706 6.1:-76912904 None:intergenic
TTCCTGAAAGAACGGATTGG+TGG 0.533390 6.1:-76912788 None:intergenic
TGCTAGTTGGTGATGTTCCA+TGG 0.551199 6.1:+76913552 MS.gene061505:CDS
AAGGCTACTGAGTTAAGACT+TGG 0.551451 6.1:+76911620 MS.gene061505:CDS
CCTTTATGTAAAAGTTAGCA+TGG 0.552884 6.1:+76912874 MS.gene061505:CDS
TGCCCCATACTTAAGGAAAG+TGG 0.553698 6.1:+76912901 MS.gene061505:CDS
TTCTTCCTGAAAGAACGGAT+TGG 0.577749 6.1:-76912791 None:intergenic
CTCACCTATGAAGATAAAGA+TGG 0.579438 6.1:+76913521 MS.gene061505:CDS
TTATGCAGCACCAAGAGCCA+TGG 0.585701 6.1:+76914231 MS.gene061505:intron
CCAACAAGGTTCTGTTGTGA+AGG 0.586707 6.1:+76911793 MS.gene061505:CDS
GTCTTAACTCAGTAGCCTTG+AGG 0.600451 6.1:-76911616 None:intergenic
GATGGTGATTGGATGCTAGT+TGG 0.601437 6.1:+76913539 MS.gene061505:CDS
CATCTTTATCTTCATAGGTG+AGG 0.607712 6.1:-76913520 None:intergenic
ATCCACTTTCCTTAAGTATG+GGG 0.610400 6.1:-76912903 None:intergenic
TAACAATGGCTTGAACCTCA+AGG 0.615787 6.1:+76911601 MS.gene061505:CDS
GGACATATTCTGAACCATGA+AGG 0.615918 6.1:-76913499 None:intergenic
CTAGGGAACAAATTGTAGGA+TGG 0.620947 6.1:+76912765 MS.gene061505:intron
TGTTCATTGACTCTTGCAAG+AGG 0.620974 6.1:+76913967 MS.gene061505:CDS
AAAGATAGTTCCAACCAACA+AGG 0.652975 6.1:+76911779 MS.gene061505:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACTTCAAAATTTATATT+TGG - chr6.1:76912705-76912724 None:intergenic 10.0%
!!! TATTTATTTTCTTTTATCAT+TGG - chr6.1:76912036-76912055 None:intergenic 10.0%
!! ACATATTATTCAAAAGTTTA+TGG - chr6.1:76913628-76913647 None:intergenic 15.0%
!! ATTTGATTATTTGAAAGTTT+AGG + chr6.1:76913675-76913694 MS.gene061505:intron 15.0%
!!! AAATTTTGTGTTAAATTTCT+AGG + chr6.1:76911948-76911967 MS.gene061505:intron 15.0%
!!! GTTTTTATTTTTGTTGTTTT+AGG + chr6.1:76913943-76913962 MS.gene061505:intron 15.0%
!! ACATATTGTAATAAACCTTA+AGG + chr6.1:76914117-76914136 MS.gene061505:intron 20.0%
!! ATGGAAATTATATTACGAAA+AGG + chr6.1:76913853-76913872 MS.gene061505:intron 20.0%
!! ATTGAAATAACTTCTACATA+AGG - chr6.1:76912012-76912031 None:intergenic 20.0%
!! GTATAAGCAATTATCATATA+AGG + chr6.1:76911986-76912005 MS.gene061505:intron 20.0%
!! TTAAAACGTACATAACTAAA+GGG + chr6.1:76913263-76913282 MS.gene061505:intron 20.0%
!! TTTAAAGGAGTGATATTAAT+AGG + chr6.1:76913336-76913355 MS.gene061505:intron 20.0%
!!! AGATACTTTTTAAAACCATA+TGG + chr6.1:76914089-76914108 MS.gene061505:intron 20.0%
!!! GTTATGTACGTTTTAAATAA+AGG - chr6.1:76913259-76913278 None:intergenic 20.0%
!!! TTAAATTTCTAGGCTTTATT+TGG + chr6.1:76911958-76911977 MS.gene061505:intron 20.0%
!!! TTTAAAACGTACATAACTAA+AGG + chr6.1:76913262-76913281 MS.gene061505:intron 20.0%
!!! TTTTTATTTAGTTTTTGGAC+CGG + chr6.1:76913788-76913807 MS.gene061505:intron 20.0%
! AATAAGCTGAAAACATTGTA+CGG - chr6.1:76912543-76912562 None:intergenic 25.0%
! AATAGATAAACTCAAACAAG+AGG - chr6.1:76912463-76912482 None:intergenic 25.0%
! ATAAACCTTAAGGTCAAAAT+TGG + chr6.1:76914127-76914146 MS.gene061505:intron 25.0%
! CTTATGATATTATCAGCTTA+TGG - chr6.1:76912129-76912148 None:intergenic 25.0%
! GAAGACAAAAATTAAACCAT+AGG - chr6.1:76912736-76912755 None:intergenic 25.0%
! GAAGTTATAATCAAATCCTA+TGG + chr6.1:76912717-76912736 MS.gene061505:intron 25.0%
! TTTCTTCAAACCAATTTCAA+TGG - chr6.1:76911762-76911781 None:intergenic 25.0%
!! AACAACTAAACATCTTTTCT+AGG - chr6.1:76912967-76912986 None:intergenic 25.0%
!! ACAACTAAACATCTTTTCTA+GGG - chr6.1:76912966-76912985 None:intergenic 25.0%
!! TAGGTTTAAGATAACAATCT+CGG + chr6.1:76913047-76913066 MS.gene061505:intron 25.0%
!! TTTAGGTTCAATTATTTAGC+CGG - chr6.1:76913810-76913829 None:intergenic 25.0%
!! TTTTCTCAAAGAAGTAACAA+TGG + chr6.1:76911587-76911606 MS.gene061505:CDS 25.0%
!!! AAAGTGGATCTCAAATTTTT+TGG + chr6.1:76912917-76912936 MS.gene061505:CDS 25.0%
!!! AAGCTATAAGTTGTTTTCAT+AGG - chr6.1:76912589-76912608 None:intergenic 25.0%
!!! GCTTAATGGTTTATTTTCAA+GGG + chr6.1:76911715-76911734 MS.gene061505:CDS 25.0%
!!! GTTATTTTCACAAGCTATTA+TGG + chr6.1:76912069-76912088 MS.gene061505:intron 25.0%
!!! GTTGTTTTCATAGGTTATTA+TGG - chr6.1:76912580-76912599 None:intergenic 25.0%
!!! TAAATCCAATTTTGACCTTA+AGG - chr6.1:76914135-76914154 None:intergenic 25.0%
!!! TGCTTAATGGTTTATTTTCA+AGG + chr6.1:76911714-76911733 MS.gene061505:CDS 25.0%
!!! TTTTGATGAATGAAAAGTGT+AGG + chr6.1:76913413-76913432 MS.gene061505:intron 25.0%
AAAATATGCACTTACTTCCA+TGG - chr6.1:76913572-76913591 None:intergenic 30.0%
AAGAAGAAGTCTCAGATATA+TGG + chr6.1:76911851-76911870 MS.gene061505:CDS 30.0%
AAGAGGATCATTAACACTAT+AGG - chr6.1:76912446-76912465 None:intergenic 30.0%
ACAACACTGATACAATGAAA+CGG - chr6.1:76913213-76913232 None:intergenic 30.0%
ATAACGTTGTTGCGAATTAA+TGG + chr6.1:76913834-76913853 MS.gene061505:intron 30.0%
ATCACCATCTTTATCTTCAT+AGG - chr6.1:76913528-76913547 None:intergenic 30.0%
ATGAAGATAAAGATGGTGAT+TGG + chr6.1:76913528-76913547 MS.gene061505:CDS 30.0%
ATTTGAAAACATCTCGATGA+CGG - chr6.1:76913185-76913204 None:intergenic 30.0%
CAGTAAATCAACAATGAAAG+TGG - chr6.1:76912297-76912316 None:intergenic 30.0%
CCTTTATGTAAAAGTTAGCA+TGG + chr6.1:76912874-76912893 MS.gene061505:CDS 30.0%
CTGTCTCAAATATCTCTTAA+AGG + chr6.1:76914052-76914071 MS.gene061505:intron 30.0%
GTTGATATTGTGGAGAATTA+CGG + chr6.1:76913083-76913102 MS.gene061505:intron 30.0%
TAAAAATCTCCTTAGCTCAA+TGG - chr6.1:76913320-76913339 None:intergenic 30.0%
TACAATATGTACTTGCCATA+TGG - chr6.1:76914107-76914126 None:intergenic 30.0%
TACTCTTTATGCATGCTTAA+TGG + chr6.1:76911701-76911720 MS.gene061505:CDS 30.0%
TATGTAAAAGTTAGCATGGA+TGG + chr6.1:76912878-76912897 MS.gene061505:CDS 30.0%
TTATTATGGTTGAGAGCTTA+TGG - chr6.1:76912566-76912585 None:intergenic 30.0%
TTCTTTCAGGAAGAATTCAA+TGG + chr6.1:76912799-76912818 MS.gene061505:CDS 30.0%
TTGAATTCTTCCTGAAAGAA+CGG - chr6.1:76912799-76912818 None:intergenic 30.0%
TTGTCTTCATTTCTGATCTA+GGG + chr6.1:76912748-76912767 MS.gene061505:intron 30.0%
TTTGTCTTCATTTCTGATCT+AGG + chr6.1:76912747-76912766 MS.gene061505:intron 30.0%
TTTGTGTGAAAGTAGATTGA+TGG + chr6.1:76913472-76913491 MS.gene061505:CDS 30.0%
! AGGTTTAAGATAACAATCTC+GGG + chr6.1:76913048-76913067 MS.gene061505:intron 30.0%
! ATGAAAAGTGTAGGTCAATT+TGG + chr6.1:76913422-76913441 MS.gene061505:intron 30.0%
! CCATGCTAACTTTTACATAA+AGG - chr6.1:76912877-76912896 None:intergenic 30.0%
! GCAACAACGTTATACATTTT+AGG - chr6.1:76913827-76913846 None:intergenic 30.0%
! TGAGCTAAGGAGATTTTTAA+AGG + chr6.1:76913321-76913340 MS.gene061505:intron 30.0%
! TTTTCAGATGCCATTGAAAT+TGG + chr6.1:76911749-76911768 MS.gene061505:CDS 30.0%
!! ATGAAAAGTTCTGAAGCAAT+TGG + chr6.1:76913999-76914018 MS.gene061505:CDS 30.0%
!! TACATAAAGGCATCCAAATT+TGG - chr6.1:76912864-76912883 None:intergenic 30.0%
!! TAGTACCGACTTTAGATTTA+AGG + chr6.1:76913137-76913156 MS.gene061505:intron 30.0%
!! TTATTTTCAAGGGCAAAAAG+AGG + chr6.1:76911725-76911744 MS.gene061505:CDS 30.0%
!!! ATCATTCTTTTGAGATTGAG+TGG - chr6.1:76912825-76912844 None:intergenic 30.0%
!!! CAAATTTTTTGGCACTTACA+AGG + chr6.1:76912928-76912947 MS.gene061505:CDS 30.0%
AAAGATAGTTCCAACCAACA+AGG + chr6.1:76911779-76911798 MS.gene061505:CDS 35.0%
AAGCACTTGAGAGACTATTT+AGG + chr6.1:76912488-76912507 MS.gene061505:intron 35.0%
AGAAGATCATTATCTCTCTC+TGG - chr6.1:76911665-76911684 None:intergenic 35.0%
AGATCCACTTTCCTTAAGTA+TGG - chr6.1:76912908-76912927 None:intergenic 35.0%
AGCTTATGGAAAATCGCTTA+CGG - chr6.1:76912115-76912134 None:intergenic 35.0%
ATCCACTTTCCTTAAGTATG+GGG - chr6.1:76912906-76912925 None:intergenic 35.0%
CATCTTTATCTTCATAGGTG+AGG - chr6.1:76913523-76913542 None:intergenic 35.0%
CTCACCTATGAAGATAAAGA+TGG + chr6.1:76913521-76913540 MS.gene061505:CDS 35.0%
GACTTCTTCTTCTCATTCAA+AGG - chr6.1:76911842-76911861 None:intergenic 35.0%
GATCCACTTTCCTTAAGTAT+GGG - chr6.1:76912907-76912926 None:intergenic 35.0%
GATGATGTAGAAGCCAAATT+TGG + chr6.1:76912848-76912867 MS.gene061505:CDS 35.0%
GTACATAACTAAAGGGTAGT+TGG + chr6.1:76913270-76913289 MS.gene061505:intron 35.0%
TGATCTAGGGAACAAATTGT+AGG + chr6.1:76912761-76912780 MS.gene061505:intron 35.0%
! ACACGCCTTAAATCTAAAGT+CGG - chr6.1:76913145-76913164 None:intergenic 35.0%
! AGTGCATATTTTGTCTCACA+TGG + chr6.1:76913580-76913599 MS.gene061505:intron 35.0%
! GTAGTTGGTTCATATGCTAA+GGG + chr6.1:76913285-76913304 MS.gene061505:intron 35.0%
!! AGTTCTGAAGCAATTGGATT+AGG + chr6.1:76914005-76914024 MS.gene061505:CDS 35.0%
AAGGCTACTGAGTTAAGACT+TGG + chr6.1:76911620-76911639 MS.gene061505:CDS 40.0%
AGTGTTGTGTCTGATGTTTG+TGG + chr6.1:76913225-76913244 MS.gene061505:intron 40.0%
CGTCATGATCGTTGATATTG+TGG + chr6.1:76913073-76913092 MS.gene061505:intron 40.0%
CTAGGGAACAAATTGTAGGA+TGG + chr6.1:76912765-76912784 MS.gene061505:intron 40.0%
GGACATATTCTGAACCATGA+AGG - chr6.1:76913502-76913521 None:intergenic 40.0%
TAACAATGGCTTGAACCTCA+AGG + chr6.1:76911601-76911620 MS.gene061505:CDS 40.0%
TGGAGAATTACGGTAAAACG+CGG + chr6.1:76913093-76913112 MS.gene061505:intron 40.0%
TTCTTCCTGAAAGAACGGAT+TGG - chr6.1:76912794-76912813 None:intergenic 40.0%
TTGACTCTTGCAAGAGGTTA+AGG + chr6.1:76913973-76913992 MS.gene061505:CDS 40.0%
! AGATTGATGGATCTCCTTCA+TGG + chr6.1:76913485-76913504 MS.gene061505:CDS 40.0%
! GAGTTAAGACTTGGTTTACC+TGG + chr6.1:76911629-76911648 MS.gene061505:CDS 40.0%
! GGTAGTTGGTTCATATGCTA+AGG + chr6.1:76913284-76913303 MS.gene061505:intron 40.0%
! TCTCATTTTGCTTGTGCACT+AGG + chr6.1:76913028-76913047 MS.gene061505:intron 40.0%
! TGGTTGATTCCATTGAGCTA+AGG + chr6.1:76913308-76913327 MS.gene061505:intron 40.0%
!! TGTTCATTGACTCTTGCAAG+AGG + chr6.1:76913967-76913986 MS.gene061505:CDS 40.0%
!! TTGGTGCTGCATAAATCAGA+TGG - chr6.1:76914225-76914244 None:intergenic 40.0%
!!! TCTCATGGAGTTTTTGGTCA+AGG + chr6.1:76913446-76913465 MS.gene061505:CDS 40.0%
!!! TTTGGCTCTCATGGAGTTTT+TGG + chr6.1:76913440-76913459 MS.gene061505:CDS 40.0%
CACAACAGAACCTTGTTGGT+TGG - chr6.1:76911792-76911811 None:intergenic 45.0%
CCAACAAGGTTCTGTTGTGA+AGG + chr6.1:76911793-76911812 MS.gene061505:CDS 45.0%
CCTTCACAACAGAACCTTGT+TGG - chr6.1:76911796-76911815 None:intergenic 45.0%
GATGGTGATTGGATGCTAGT+TGG + chr6.1:76913539-76913558 MS.gene061505:CDS 45.0%
GTCTGATGTTTGTGGCTGTT+AGG + chr6.1:76913233-76913252 MS.gene061505:intron 45.0%
TGCCCCATACTTAAGGAAAG+TGG + chr6.1:76912901-76912920 MS.gene061505:CDS 45.0%
! GCGACTTTTGCACTTTTCCA+TGG - chr6.1:76914251-76914270 None:intergenic 45.0%
! GTCTTAACTCAGTAGCCTTG+AGG - chr6.1:76911619-76911638 None:intergenic 45.0%
! GTTGGTTCATATGCTAAGGG+TGG + chr6.1:76913288-76913307 MS.gene061505:intron 45.0%
! TTGCACTTTTCCATGGCTCT+TGG - chr6.1:76914244-76914263 None:intergenic 45.0%
!! GTAGGTCAATTTGGCTCTCA+TGG + chr6.1:76913431-76913450 MS.gene061505:intron 45.0%
!! TGCTAGTTGGTGATGTTCCA+TGG + chr6.1:76913552-76913571 MS.gene061505:CDS 45.0%
!! TTCCTGAAAGAACGGATTGG+TGG - chr6.1:76912791-76912810 None:intergenic 45.0%
!! TAAAAATAAAGAATTTATAT+TGG + chr6.1:76914188-76914207 MS.gene061505:intron 5.0%
!!! AAATTTTTTTATTTAGTTTT+TGG + chr6.1:76913783-76913802 MS.gene061505:intron 5.0%
CTCTCTGGTGATTCAGAACC+AGG - chr6.1:76911650-76911669 None:intergenic 50.0%
TGGATGGTGCCCCATACTTA+AGG + chr6.1:76912894-76912913 MS.gene061505:CDS 50.0%
TTATGCAGCACCAAGAGCCA+TGG + chr6.1:76914231-76914250 MS.gene061505:intron 50.0%
GGCCACCAATCCGTTCTTTC+AGG + chr6.1:76912786-76912805 MS.gene061505:CDS 55.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 76911569 76914276 76911569 ID=MS.gene061505
chr6.1 mRNA 76911569 76914276 76911569 ID=MS.gene061505.t1;Parent=MS.gene061505
chr6.1 exon 76911569 76911885 76911569 ID=MS.gene061505.t1.exon1;Parent=MS.gene061505.t1
chr6.1 CDS 76911569 76911885 76911569 ID=cds.MS.gene061505.t1;Parent=MS.gene061505.t1
chr6.1 exon 76912769 76912995 76912769 ID=MS.gene061505.t1.exon2;Parent=MS.gene061505.t1
chr6.1 CDS 76912769 76912995 76912769 ID=cds.MS.gene061505.t1;Parent=MS.gene061505.t1
chr6.1 exon 76913435 76913576 76913435 ID=MS.gene061505.t1.exon3;Parent=MS.gene061505.t1
chr6.1 CDS 76913435 76913576 76913435 ID=cds.MS.gene061505.t1;Parent=MS.gene061505.t1
chr6.1 exon 76913965 76914026 76913965 ID=MS.gene061505.t1.exon4;Parent=MS.gene061505.t1
chr6.1 CDS 76913965 76914026 76913965 ID=cds.MS.gene061505.t1;Parent=MS.gene061505.t1
chr6.1 exon 76914239 76914276 76914239 ID=MS.gene061505.t1.exon5;Parent=MS.gene061505.t1
chr6.1 CDS 76914239 76914276 76914239 ID=cds.MS.gene061505.t1;Parent=MS.gene061505.t1
Gene Sequence

>MS.gene061505

ATGGAAAGTTCTGACAAATTTTCTCAAAGAAGTAACAATGGCTTGAACCTCAAGGCTACTGAGTTAAGACTTGGTTTACCTGGTTCTGAATCACCAGAGAGAGATAATGATCTTCTTGAAGAAAAAAATGCATACTCTTTATGCATGCTTAATGGTTTATTTTCAAGGGCAAAAAGAGGTTTTTCAGATGCCATTGAAATTGGTTTGAAGAAAGATAGTTCCAACCAACAAGGTTCTGTTGTGAAGGATAGAATTCAACAGTCTTCAAATCCTTTGAATGAGAAGAAGAAGTCTCAGATATATGGTTCAGCTGCAAAGTACTTTCATTTTCATTAGCTTTACTATTTTTCTTTTCTTTGTTGTTTTTTGAGAGAAAAGAAAATTTTGTGTTAAATTTCTAGGCTTTATTTGGATATAGTATAAGCAATTATCATATAAGGCCTTATGTAGAAGTTATTTCAATACCAATGATAAAAGAAAATAAATATGTTTTTATATAAGTTATTTTCACAAGCTATTATGGAGAGCTTATGAGAATAAGCTCCGTAAGCGATTTTCCATAAGCTGATAATATCATAAGAACATGTTATAAGTTGTTTTTCATAAACTCTTTCAAACAGTCTTATAAATGCTTATGTCTTTAAATAAGTTCAAATAAGTCGATCAAAATGCGCTCTTAGTAGTTTTTTGTTATTATATCATGTTTTACATGTCTAAATATTTTACCACTTTCATTGTTGATTTACTGTGTCTAGATTTTTCTAATATTTGTGTGTGCTAATCAAGTGTTGAAAGCAAGAAGAAAATAAGATGATTGAGAGAAAGATTAAATGACTTTTTACTTTTTATCTTGTAAATTTTGATCTTATGTTAGCCTATAGTGTTAATGATCCTCTTGTTTGAGTTTATCTATTAACGTAAGCACTTGAGAGACTATTTAGGAGAGCTTATCAAAACAACTTATCACATCTCCGTACAATGTTTTCAGCTTATTCCATAAGCTCTCAACCATAATAACCTATGAAAACAACTTATAGCTTATATAAAAATATTTTGATTTTGTTTAAGCTTTTGTTGTATAAATAAATTATACTTATGCACTTCTGCTATAAGTACTTAATTAAACTATTTATCCAAATATAAATTTTGAAGTTATAATCAAATCCTATGGTTTAATTTTTGTCTTCATTTCTGATCTAGGGAACAAATTGTAGGATGGCCACCAATCCGTTCTTTCAGGAAGAATTCAATGGCCACTCAATCTCAAAAGAATGATAATGATGATGTAGAAGCCAAATTTGGATGCCTTTATGTAAAAGTTAGCATGGATGGTGCCCCATACTTAAGGAAAGTGGATCTCAAATTTTTTGGCACTTACAAGGAACTATCTTCTGCCCTAGAAAAGATGTTTAGTTGTTTTACAATCAGTGAGTTTTTTTTTATTACTTGAAAATTACTCTCTCATTTTGCTTGTGCACTAGGTTTAAGATAACAATCTCGGGTGCGTCATGATCGTTGATATTGTGGAGAATTACGGTAAAACGCGGCTGATGTTACTTTAATATATGTAGTACCGACTTTAGATTTAAGGCGTGTTCGACATGTTTTAGTATCCGTCATCGAGATGTTTTCAAATTATTACCGTTTCATTGTATCAGTGTTGTGTCTGATGTTTGTGGCTGTTAGGCCTTTATTTAAAACGTACATAACTAAAGGGTAGTTGGTTCATATGCTAAGGGTGGTTGATTCCATTGAGCTAAGGAGATTTTTAAAGGAGTGATATTAATAGGTCAAATAATTTTTTACTAATAAAATGTTCATCATGTAGCTGATTTTGATGATGTTTTTGATGAATGAAAAGTGTAGGTCAATTTGGCTCTCATGGAGTTTTTGGTCAAGGTAATTTGTGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTCCTCACCTATGAAGATAAAGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGAAGTAAGTGCATATTTTGTCTCACATGGATTCATGAACTTGTGATTGAGTCCATAAACTTTTGAATAATATGTAACTAGATATATATGAACTTTTATATAATTTGATTATTTGAAAGTTTAGGTCTGCATAAAAATTCAAATACTCAATTACAAATTCTGAGAAGTTAAAAAATCTAATTTCAAATTTTTTAGTTCAAAGAATTATTGAAATTTTTTTATTTAGTTTTTGGACCGGCTAAATAATTGAACCTAAAATGTATAACGTTGTTGCGAATTAATGGAAATTATATTACGAAAAGGATATTATTTTGTTTATCTGAAAAATGCAATAATAGAAAGAACAAAATGATGAGTTTTTAACTCAAATGTTTTTATTTTTGTTGTTTTAGGATGTTCATTGACTCTTGCAAGAGGTTAAGGATAATGAAAAGTTCTGAAGCAATTGGATTAGGTGAGTCTCACATATATGATAATCTCTGTCTCAAATATCTCTTAAAGGATCATTGATGATATAGATACTTTTTAAAACCATATGGCAAGTACATATTGTAATAAACCTTAAGGTCAAAATTGGATTTATTAAACATTGAAAAAAAAATCACAAATATCAAATAAAAATAAAGAATTTATATTGGTATATGATTATCCATCTGATTTATGCAGCACCAAGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG
Protein sequence

>MS.gene061505.t1

MESSDKFSQRSNNGLNLKATELRLGLPGSESPERDNDLLEEKNAYSLCMLNGLFSRAKRGFSDAIEIGLKKDSSNQQGSVVKDRIQQSSNPLNEKKKSQIYGSAAKEQIVGWPPIRSFRKNSMATQSQKNDNDDVEAKFGCLYVKVSMDGAPYLRKVDLKFFGTYKELSSALEKMFSCFTISQFGSHGVFGQGNLCESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWKMFIDSCKRLRIMKSSEAIGLAPRAMEKCKSRN