AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68989

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68989.t1 MTR_6g488150 91.188 261 16 2 1 261 1 254 8.22e-176 484
MS.gene68989.t1 MTR_8g103030 63.251 283 57 7 14 261 23 293 9.84e-112 323
MS.gene68989.t1 MTR_6g488150 87.500 184 16 2 1 184 1 177 2.26e-111 319
MS.gene68989.t1 MTR_8g067530 55.862 290 93 6 7 261 67 356 6.69e-98 291
MS.gene68989.t1 MTR_5g030710 54.895 286 89 7 15 261 51 335 1.12e-96 287
MS.gene68989.t1 MTR_2g101500 51.299 308 93 7 10 261 20 326 1.73e-90 271
MS.gene68989.t1 MTR_5g067350 52.525 297 93 10 7 261 57 347 5.51e-87 263
MS.gene68989.t1 MTR_1g093240 50.973 257 92 6 13 261 6 236 6.61e-76 230
MS.gene68989.t1 MTR_1g080860 49.035 259 98 6 15 260 15 252 1.39e-71 220
MS.gene68989.t1 MTR_1g093240 49.388 245 90 6 13 249 6 224 8.61e-67 207
MS.gene68989.t1 MTR_1g070520 63.354 161 54 2 105 261 86 245 7.33e-66 205
MS.gene68989.t1 MTR_7g096090 61.783 157 58 1 105 261 96 250 4.27e-65 203
MS.gene68989.t1 MTR_1g080860 47.390 249 97 6 15 250 15 242 9.85e-64 199
MS.gene68989.t1 MTR_1g093240 45.333 225 89 6 13 229 6 204 4.71e-54 174
MS.gene68989.t1 MTR_1g070830 42.373 236 91 6 15 250 12 202 2.89e-52 169
MS.gene68989.t1 MTR_1g040675 42.437 238 80 8 15 250 1 183 4.25e-51 166
MS.gene68989.t1 MTR_1g076270 42.616 237 69 6 13 249 9 178 5.10e-50 162
MS.gene68989.t1 MTR_1g093350 42.616 237 69 6 13 249 9 178 5.10e-50 162
MS.gene68989.t1 MTR_5g067350 46.119 219 73 11 7 183 57 272 3.99e-40 140
MS.gene68989.t1 MTR_1g040675 39.631 217 74 8 15 229 1 162 8.55e-40 135
MS.gene68989.t1 MTR_1g069495 43.407 182 70 4 108 256 82 263 1.51e-38 136
MS.gene68989.t1 MTR_2g100780 37.652 247 122 9 21 245 18 254 5.31e-36 129
MS.gene68989.t1 MTR_2g100780 37.652 247 122 9 21 245 18 254 6.08e-36 129
MS.gene68989.t1 MTR_4g011880 50.000 150 44 4 106 253 52 172 5.26e-34 121
MS.gene68989.t1 MTR_8g014520 32.721 272 134 7 9 245 3 260 1.22e-32 120
MS.gene68989.t1 MTR_8g014520 32.721 272 134 7 9 245 3 260 1.23e-32 120
MS.gene68989.t1 MTR_2g102490 54.717 106 38 3 141 244 86 183 4.23e-32 117
MS.gene68989.t1 MTR_3g106850 31.056 161 79 6 94 245 72 209 1.03e-18 82.4
MS.gene68989.t1 MTR_4g124300 36.879 141 62 5 105 244 68 182 2.11e-18 80.9
MS.gene68989.t1 MTR_7g110790 36.434 129 64 3 114 242 45 155 9.10e-18 78.6
MS.gene68989.t1 MTR_1g085750 34.532 139 74 3 104 242 49 170 1.84e-16 75.5
MS.gene68989.t1 MTR_4g115075 29.452 146 66 3 106 243 90 206 1.14e-14 71.2
MS.gene68989.t1 MTR_1g109510 34.483 145 73 5 101 242 43 168 4.39e-13 66.2
MS.gene68989.t1 MTR_1g085750 32.540 126 68 3 104 229 49 157 6.02e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68989.t1 AT4G29080 61.189 286 77 9 4 261 26 305 9.07e-104 304
MS.gene68989.t1 AT2G22670 50.549 273 107 7 15 260 47 318 2.94e-83 252
MS.gene68989.t1 AT2G22670 50.549 273 107 7 15 260 47 318 2.94e-83 252
MS.gene68989.t1 AT2G22670 50.549 273 107 7 15 260 64 335 4.30e-83 252
MS.gene68989.t1 AT5G65670 50.545 275 107 3 15 260 61 335 5.92e-82 249
MS.gene68989.t1 AT5G65670 50.181 277 107 4 15 260 61 337 4.79e-80 244
MS.gene68989.t1 AT2G22670 49.817 273 107 8 15 260 47 316 7.54e-80 243
MS.gene68989.t1 AT2G22670 49.817 273 107 8 15 260 47 316 7.54e-80 243
MS.gene68989.t1 AT3G04730 48.855 262 92 7 15 261 2 236 2.92e-75 229
MS.gene68989.t1 AT4G14550 50.397 252 96 7 15 261 1 228 6.52e-74 225
MS.gene68989.t1 AT3G23050 49.425 261 95 8 15 261 6 243 5.25e-72 221
MS.gene68989.t1 AT1G04250 46.457 254 96 8 15 260 7 228 2.23e-69 214
MS.gene68989.t1 AT4G14550 48.548 241 95 6 15 250 1 217 1.45e-66 206
MS.gene68989.t1 AT4G14550 46.119 219 89 7 15 228 1 195 2.83e-53 171
MS.gene68989.t1 AT3G23050 45.175 228 89 7 15 229 6 210 1.19e-51 167
MS.gene68989.t1 AT1G04240 44.068 236 78 8 15 250 5 186 1.65e-49 161
MS.gene68989.t1 AT1G04240 42.742 248 88 8 3 250 93 286 1.32e-48 162
MS.gene68989.t1 AT5G43700 39.831 236 78 6 15 250 11 182 8.34e-46 152
MS.gene68989.t1 AT3G23030 41.350 237 66 7 13 249 7 170 4.75e-42 142
MS.gene68989.t1 AT1G52830 38.750 240 91 9 11 250 2 185 1.53e-41 141
MS.gene68989.t1 AT3G15540 40.244 246 91 9 14 256 5 197 2.18e-41 141
MS.gene68989.t1 AT3G23030 41.350 237 66 7 13 249 94 257 3.89e-41 142
MS.gene68989.t1 AT4G14560 41.702 235 63 7 12 246 4 164 1.14e-39 135
MS.gene68989.t1 AT4G28640 44.512 164 71 4 103 250 83 242 2.84e-37 132
MS.gene68989.t1 AT1G04550 44.633 177 66 6 108 261 69 236 3.00e-37 131
MS.gene68989.t1 AT2G33310 45.562 169 64 5 108 255 75 236 5.39e-37 131
MS.gene68989.t1 AT2G33310 45.562 169 64 5 108 255 75 236 5.39e-37 131
MS.gene68989.t1 AT2G33310 45.562 169 64 5 108 255 76 237 5.77e-37 131
MS.gene68989.t1 AT4G28640 44.444 162 70 4 103 248 83 240 6.36e-37 131
MS.gene68989.t1 AT3G16500 36.863 255 118 9 7 245 25 252 5.56e-36 129
MS.gene68989.t1 AT3G16500 36.863 255 118 9 7 245 25 252 6.68e-36 129
MS.gene68989.t1 AT1G15580 34.764 233 74 4 12 244 5 159 8.36e-36 125
MS.gene68989.t1 AT4G28640 45.399 163 67 5 103 248 83 240 1.02e-35 129
MS.gene68989.t1 AT1G04100 36.994 173 80 4 105 250 90 260 3.63e-31 116
MS.gene68989.t1 AT1G51950 40.588 170 76 4 97 245 85 250 5.24e-31 116
MS.gene68989.t1 AT4G14550 41.279 172 74 5 15 181 1 150 4.94e-30 111
MS.gene68989.t1 AT3G23050 40.437 183 75 6 15 184 6 167 2.14e-29 109
MS.gene68989.t1 AT5G25890 37.500 144 68 3 109 252 49 170 3.44e-28 106
MS.gene68989.t1 AT3G17600 37.857 140 63 4 103 242 39 154 2.93e-22 90.5
MS.gene68989.t1 AT3G62100 38.462 104 49 1 140 243 81 169 1.02e-18 81.3
MS.gene68989.t1 AT2G46990 37.143 105 51 1 140 244 83 172 1.95e-18 80.9
MS.gene68989.t1 AT4G32280 25.366 205 93 7 86 257 72 249 5.65e-15 72.8
MS.gene68989.t1 AT4G32280 32.759 116 52 3 142 257 118 207 3.30e-14 70.1
MS.gene68989.t1 AT1G15050 33.582 134 70 4 115 247 35 150 9.00e-14 67.4
MS.gene68989.t1 AT3G62100 37.778 90 41 1 140 229 81 155 1.64e-13 67.0
MS.gene68989.t1 AT2G46990 37.778 90 41 1 140 229 83 157 1.68e-13 67.0
MS.gene68989.t1 AT1G15050 33.582 134 70 4 115 247 67 182 1.83e-13 67.4
MS.gene68989.t1 AT2G01200 34.711 121 63 2 127 247 84 188 4.51e-13 66.6
MS.gene68989.t1 AT2G01200 34.711 121 63 2 127 247 84 188 4.51e-13 66.6

Find 47 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATAAAGGCATCCAAATT+TGG 0.170065 6.2:+87164511 None:intergenic
TACTCTTTATGCATGCTTAA+TGG 0.190958 6.2:-87165670 MS.gene68989:CDS
AGATCCACTTTCCTCAAGTA+TGG 0.227669 6.2:+87164467 None:intergenic
GGCCACCAATCCGTTCTTTC+AGG 0.268848 6.2:-87164586 MS.gene68989:CDS
GATGATGTAGAAGCCAAATT+TGG 0.307716 6.2:-87164524 MS.gene68989:CDS
ATGAAAAGTGTAGGTCAATT+TGG 0.319033 6.2:-87163950 MS.gene68989:intron
TTGACTCTTGCAAGAGGTTA+AGG 0.334728 6.2:-87163399 MS.gene68989:CDS
AGTTCTGAAGCAATTGGATT+AGG 0.360095 6.2:-87163367 MS.gene68989:intron
TTTGTGTGAAAGTAGATTGA+TGG 0.380197 6.2:-87163900 MS.gene68989:CDS
CCTTCACAACAGAACCTTGT+TGG 0.383043 6.2:+87165578 None:intergenic
ATGAAAAGTTCTGAAGCAAT+TGG 0.388635 6.2:-87163373 MS.gene68989:CDS
AAGAAGAAGTCTCAGATATA+TGG 0.397635 6.2:-87165520 MS.gene68989:CDS
CACAACAGAACCTTGTTGGT+TGG 0.401071 6.2:+87165582 None:intergenic
ATCACCATCTTTATCTTCAT+AGG 0.403740 6.2:+87163847 None:intergenic
TGATCTAGGGAACAAATTGT+AGG 0.417413 6.2:-87164611 MS.gene68989:intron
TTTCTTCAAACCAATTTCAA+TGG 0.423741 6.2:+87165612 None:intergenic
CTCTCTGGTGATTCAGAACC+AGG 0.434581 6.2:+87165724 None:intergenic
AGATTGATGGATCTCCTTCA+TGG 0.440946 6.2:-87163887 MS.gene68989:CDS
GTAGGTCAATTTGGCTCTCA+TGG 0.457514 6.2:-87163941 MS.gene68989:intron
GACTTCTTCTTCTCATTCAA+AGG 0.481249 6.2:+87165532 None:intergenic
TTCTTTCAGGAAGAATTCAA+TGG 0.488415 6.2:-87164573 MS.gene68989:CDS
AGAAGATCATTATCTCTCTC+TGG 0.489102 6.2:+87165709 None:intergenic
ATGAAGATAAAGATGGTGAT+TGG 0.490100 6.2:-87163844 MS.gene68989:CDS
TATGTAAAAGTTAGCATGGA+TGG 0.496315 6.2:-87164494 MS.gene68989:CDS
GAGTTAAGACTTGGTTTACC+TGG 0.509603 6.2:-87165742 MS.gene68989:CDS
TTGAATTCTTCCTGAAAGAA+CGG 0.519997 6.2:+87164576 None:intergenic
AAAATATGCACTTACTTCCA+TGG 0.525031 6.2:+87163803 None:intergenic
GATCCACTTTCCTCAAGTAT+GGG 0.530733 6.2:+87164468 None:intergenic
TTCCTGAAAGAACGGATTGG+TGG 0.533390 6.2:+87164584 None:intergenic
TGCTAGTTGGTGATGTTCCA+TGG 0.551199 6.2:-87163820 MS.gene68989:CDS
AAGGCTACTGAGTTAAGACT+TGG 0.551451 6.2:-87165751 MS.gene68989:CDS
CCTTTATGTAAAAGTTAGCA+TGG 0.552884 6.2:-87164498 MS.gene68989:CDS
TTCTTCCTGAAAGAACGGAT+TGG 0.577749 6.2:+87164581 None:intergenic
CTCACCTATGAAGATAAAGA+TGG 0.579438 6.2:-87163851 MS.gene68989:CDS
TGCCCCATACTTGAGGAAAG+TGG 0.579458 6.2:-87164471 MS.gene68989:CDS
TTATGCAGCACCAAGAGCCA+TGG 0.585701 6.2:-87163140 MS.gene68989:intron
CCAACAAGGTTCTGTTGTGA+AGG 0.586707 6.2:-87165578 MS.gene68989:CDS
GTCTTAACTCAGTAGCCTTG+AGG 0.600451 6.2:+87165755 None:intergenic
GATGGTGATTGGATGCTAGT+TGG 0.601437 6.2:-87163833 MS.gene68989:CDS
CATCTTTATCTTCATAGGTG+AGG 0.607712 6.2:+87163852 None:intergenic
TAACAATGGCTTGAACCTCA+AGG 0.615787 6.2:-87165770 MS.gene68989:CDS
GGACATATTCTGAACCATGA+AGG 0.615918 6.2:+87163873 None:intergenic
TGGATGGTGCCCCATACTTG+AGG 0.620867 6.2:-87164478 MS.gene68989:CDS
CTAGGGAACAAATTGTAGGA+TGG 0.620947 6.2:-87164607 MS.gene68989:intron
TGTTCATTGACTCTTGCAAG+AGG 0.620974 6.2:-87163405 MS.gene68989:CDS
AAAGATAGTTCCAACCAACA+AGG 0.652975 6.2:-87165592 MS.gene68989:CDS
ATCCACTTTCCTCAAGTATG+GGG 0.656738 6.2:+87164469 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACTTCAAAATTTATATT+TGG + chr6.2:87164252-87164271 None:intergenic 10.0%
!!! TATTTATTTTCTTTTATCAT+TGG + chr6.2:87163584-87163603 None:intergenic 10.0%
!! ACATATTATTCAAAAGTTTA+TGG + chr6.2:87165175-87165194 None:intergenic 15.0%
!! ATTTGATTATTTGAAAGTTT+AGG - chr6.2:87165222-87165241 MS.gene68989:intron 15.0%
!!! AAATTTTGTGTTAAATTTCT+AGG - chr6.2:87163496-87163515 MS.gene68989:intron 15.0%
!!! GTTTTTATTTTTGTTGTTTT+AGG - chr6.2:87165490-87165509 MS.gene68989:intron 15.0%
!! ATGGAAATTATATTACGAAA+AGG - chr6.2:87165400-87165419 MS.gene68989:intron 20.0%
!! ATTGAAATAACTTCTACATA+AGG + chr6.2:87163560-87163579 None:intergenic 20.0%
!! GTATAAGCAATTATCATATA+AGG - chr6.2:87163534-87163553 MS.gene68989:intron 20.0%
!! TTAAAACGTACATAACTAAA+GGG - chr6.2:87164810-87164829 MS.gene68989:intron 20.0%
!! TTTAAAGGAGTGATATTAAT+AGG - chr6.2:87164883-87164902 MS.gene68989:intron 20.0%
!!! AGATACTTTTTAAAACCATA+TGG - chr6.2:87165636-87165655 MS.gene68989:CDS 20.0%
!!! GTTATGTACGTTTTAAATAA+AGG + chr6.2:87164806-87164825 None:intergenic 20.0%
!!! TTAAATTTCTAGGCTTTATT+TGG - chr6.2:87163506-87163525 MS.gene68989:intron 20.0%
!!! TTTAAAACGTACATAACTAA+AGG - chr6.2:87164809-87164828 MS.gene68989:intron 20.0%
!!! TTTTTATATAGTTTTTGGAC+CGG - chr6.2:87165335-87165354 MS.gene68989:intron 20.0%
! AATAAGCTGAAAACATTGTA+CGG + chr6.2:87164091-87164110 None:intergenic 25.0%
! AATAGATAAACTCAAACAAG+AGG + chr6.2:87164011-87164030 None:intergenic 25.0%
! ATAACGTTGTTGCAAATTAA+TGG - chr6.2:87165381-87165400 MS.gene68989:intron 25.0%
! CATATTGTAATAAACCTTAG+AGG - chr6.2:87165665-87165684 MS.gene68989:CDS 25.0%
! CTTATGATATTATCAGCTTA+TGG + chr6.2:87163677-87163696 None:intergenic 25.0%
! GAAGACAAAAATTAAACCAT+AGG + chr6.2:87164283-87164302 None:intergenic 25.0%
! GAAGTTATAATCAAATCCTA+TGG - chr6.2:87164264-87164283 MS.gene68989:intron 25.0%
! TTTCTTCAAACCAATTTCAA+TGG + chr6.2:87163310-87163329 None:intergenic 25.0%
!! AACAACTAAACATCTTTTCT+AGG + chr6.2:87164514-87164533 None:intergenic 25.0%
!! ACAACTAAACATCTTTTCTA+GGG + chr6.2:87164513-87164532 None:intergenic 25.0%
!! GCAACAACGTTATATATTTT+AGG + chr6.2:87165374-87165393 None:intergenic 25.0%
!! TAGGTTTAAGATAACAATCT+CGG - chr6.2:87164594-87164613 MS.gene68989:CDS 25.0%
!! TTTAGGTTCAATTATTTAGC+CGG + chr6.2:87165357-87165376 None:intergenic 25.0%
!! TTTTCTCAAAGAAGTAACAA+TGG - chr6.2:87163135-87163154 MS.gene68989:CDS 25.0%
!!! AAAGTGGATCTCAAATTTTT+TGG - chr6.2:87164464-87164483 MS.gene68989:CDS 25.0%
!!! AAGCTATAAGTTGTTTTCAT+AGG + chr6.2:87164137-87164156 None:intergenic 25.0%
!!! GCTTAATGGTTTATTTTCAA+GGG - chr6.2:87163263-87163282 MS.gene68989:intron 25.0%
!!! GTTATTTTCACAAGCTATTA+TGG - chr6.2:87163617-87163636 MS.gene68989:intron 25.0%
!!! GTTGTTTTCATAGGTTATTA+TGG + chr6.2:87164128-87164147 None:intergenic 25.0%
!!! TAGTACCGATTTTAGATTTA+AGG - chr6.2:87164684-87164703 MS.gene68989:intron 25.0%
!!! TGCTTAATGGTTTATTTTCA+AGG - chr6.2:87163262-87163281 MS.gene68989:intron 25.0%
!!! TTTTGATGAATGAAAAGTGT+AGG - chr6.2:87164960-87164979 MS.gene68989:intron 25.0%
AAAATATGCACTTACTTCCA+TGG + chr6.2:87165119-87165138 None:intergenic 30.0%
AAGAAGAAGTCTCAGATATA+TGG - chr6.2:87163399-87163418 MS.gene68989:CDS 30.0%
AAGAGGATCATTAACACTAT+AGG + chr6.2:87163994-87164013 None:intergenic 30.0%
ACAACACTGATACAATGAAA+AGG + chr6.2:87164760-87164779 None:intergenic 30.0%
ATCACCATCTTTATCTTCAT+AGG + chr6.2:87165075-87165094 None:intergenic 30.0%
ATGAAGATAAAGATGGTGAT+TGG - chr6.2:87165075-87165094 MS.gene68989:intron 30.0%
ATTTGAAAACATCTCGATGA+CGG + chr6.2:87164732-87164751 None:intergenic 30.0%
CAGTAAATCAACAATGAAAG+TGG + chr6.2:87163845-87163864 None:intergenic 30.0%
CCTTTATGTAAAAGTTAGCA+TGG - chr6.2:87164421-87164440 MS.gene68989:CDS 30.0%
CTGTCTCAAATATCTCTTAA+AGG - chr6.2:87165599-87165618 MS.gene68989:CDS 30.0%
GTTGATATTGTGGAGAATTA+CGG - chr6.2:87164630-87164649 MS.gene68989:intron 30.0%
TAAAAATCTCCTTAGCTCAA+TGG + chr6.2:87164867-87164886 None:intergenic 30.0%
TAAACCTTAGAGGTCAAAAT+TGG - chr6.2:87165675-87165694 MS.gene68989:CDS 30.0%
TACAATATGTACTTGCCATA+TGG + chr6.2:87165654-87165673 None:intergenic 30.0%
TACTCTTTATGCATGCTTAA+TGG - chr6.2:87163249-87163268 MS.gene68989:intron 30.0%
TATGTAAAAGTTAGCATGGA+TGG - chr6.2:87164425-87164444 MS.gene68989:CDS 30.0%
TTATTATGGTTGAGAGCTTA+TGG + chr6.2:87164114-87164133 None:intergenic 30.0%
TTCTTTCAGGAAGAATTCAA+TGG - chr6.2:87164346-87164365 MS.gene68989:intron 30.0%
TTGAATTCTTCCTGAAAGAA+CGG + chr6.2:87164346-87164365 None:intergenic 30.0%
TTGTCTTCATTTCTGATCTA+GGG - chr6.2:87164295-87164314 MS.gene68989:intron 30.0%
TTTGTCTTCATTTCTGATCT+AGG - chr6.2:87164294-87164313 MS.gene68989:intron 30.0%
TTTGTGTGAAAGTAGATTGA+TGG - chr6.2:87165019-87165038 MS.gene68989:intron 30.0%
! ACACGCCTTAAATCTAAAAT+CGG + chr6.2:87164692-87164711 None:intergenic 30.0%
! AGGTTTAAGATAACAATCTC+GGG - chr6.2:87164595-87164614 MS.gene68989:CDS 30.0%
! ATGAAAAGTGTAGGTCAATT+TGG - chr6.2:87164969-87164988 MS.gene68989:intron 30.0%
! CCATGCTAACTTTTACATAA+AGG + chr6.2:87164424-87164443 None:intergenic 30.0%
! TGAGCTAAGGAGATTTTTAA+AGG - chr6.2:87164868-87164887 MS.gene68989:intron 30.0%
! TTTTCAGATGCCATTGAAAT+TGG - chr6.2:87163297-87163316 MS.gene68989:intron 30.0%
!! AAATCCAATTTTGACCTCTA+AGG + chr6.2:87165682-87165701 None:intergenic 30.0%
!! ATGAAAAGTTCTGAAGCAAT+TGG - chr6.2:87165546-87165565 MS.gene68989:CDS 30.0%
!! TACATAAAGGCATCCAAATT+TGG + chr6.2:87164411-87164430 None:intergenic 30.0%
!! TTATTTTCAAGGGCAAAAAG+AGG - chr6.2:87163273-87163292 MS.gene68989:intron 30.0%
!!! ATCATTCTTTTGAGATTGAG+TGG + chr6.2:87164372-87164391 None:intergenic 30.0%
!!! CAAATTTTTTGGCACTTACA+AGG - chr6.2:87164475-87164494 MS.gene68989:CDS 30.0%
AAAGATAGTTCCAACCAACA+AGG - chr6.2:87163327-87163346 MS.gene68989:intron 35.0%
AAGCACTTGTGAGACTATTT+AGG - chr6.2:87164036-87164055 MS.gene68989:intron 35.0%
AGAAGATCATTATCTCTCTC+TGG + chr6.2:87163213-87163232 None:intergenic 35.0%
AGCTTATGGAAAATCGCTTA+CGG + chr6.2:87163663-87163682 None:intergenic 35.0%
CATCTTTATCTTCATAGGTG+AGG + chr6.2:87165070-87165089 None:intergenic 35.0%
CTCACCTATGAAGATAAAGA+TGG - chr6.2:87165068-87165087 MS.gene68989:intron 35.0%
GACTTCTTCTTCTCATTCAA+AGG + chr6.2:87163390-87163409 None:intergenic 35.0%
GATGATGTAGAAGCCAAATT+TGG - chr6.2:87164395-87164414 MS.gene68989:intron 35.0%
GTACATAACTAAAGGGTAGT+TGG - chr6.2:87164817-87164836 MS.gene68989:intron 35.0%
TGATCTAGGGAACAAATTGT+AGG - chr6.2:87164308-87164327 MS.gene68989:intron 35.0%
! AGTGCATATTTTGTCTCACA+TGG - chr6.2:87165127-87165146 MS.gene68989:intron 35.0%
! GTAGTTGGTTCATATGCTAA+GGG - chr6.2:87164832-87164851 MS.gene68989:intron 35.0%
!! AGTTCTGAAGCAATTGGATT+AGG - chr6.2:87165552-87165571 MS.gene68989:CDS 35.0%
AAGGCTACTGAGTTAAGACT+TGG - chr6.2:87163168-87163187 MS.gene68989:intron 40.0%
AGATCCACTTTCCTCAAGTA+TGG + chr6.2:87164455-87164474 None:intergenic 40.0%
ATCCACTTTCCTCAAGTATG+GGG + chr6.2:87164453-87164472 None:intergenic 40.0%
CGTCATGATCGTTGATATTG+TGG - chr6.2:87164620-87164639 MS.gene68989:intron 40.0%
CTAGGGAACAAATTGTAGGA+TGG - chr6.2:87164312-87164331 MS.gene68989:intron 40.0%
GATCCACTTTCCTCAAGTAT+GGG + chr6.2:87164454-87164473 None:intergenic 40.0%
GGACATATTCTGAACCATGA+AGG + chr6.2:87165049-87165068 None:intergenic 40.0%
TAACAATGGCTTGAACCTCA+AGG - chr6.2:87163149-87163168 MS.gene68989:intron 40.0%
TGGAGAATTACGGTAAAACG+CGG - chr6.2:87164640-87164659 MS.gene68989:intron 40.0%
TTCTTCCTGAAAGAACGGAT+TGG + chr6.2:87164341-87164360 None:intergenic 40.0%
TTGACTCTTGCAAGAGGTTA+AGG - chr6.2:87165520-87165539 MS.gene68989:CDS 40.0%
! AGATTGATGGATCTCCTTCA+TGG - chr6.2:87165032-87165051 MS.gene68989:intron 40.0%
! GAGTTAAGACTTGGTTTACC+TGG - chr6.2:87163177-87163196 MS.gene68989:intron 40.0%
! GGTAGTTGGTTCATATGCTA+AGG - chr6.2:87164831-87164850 MS.gene68989:intron 40.0%
! TCTCATTTTGCTTGTGCACT+AGG - chr6.2:87164575-87164594 MS.gene68989:CDS 40.0%
! TGGTTGATTCCATTGAGCTA+AGG - chr6.2:87164855-87164874 MS.gene68989:intron 40.0%
!! TGTTCATTGACTCTTGCAAG+AGG - chr6.2:87165514-87165533 MS.gene68989:CDS 40.0%
!! TTGGTGCTGCATAAATCAGA+TGG + chr6.2:87165773-87165792 None:intergenic 40.0%
!!! TCTCATGGAGTTTTTGGTCA+AGG - chr6.2:87164993-87165012 MS.gene68989:intron 40.0%
!!! TTTGGCTCTCATGGAGTTTT+TGG - chr6.2:87164987-87165006 MS.gene68989:intron 40.0%
AGTGTTGTGTCCGATGTTTG+TGG - chr6.2:87164772-87164791 MS.gene68989:intron 45.0%
CACAACAGAACCTTGTTGGT+TGG + chr6.2:87163340-87163359 None:intergenic 45.0%
CCAACAAGGTTCTGTTGTGA+AGG - chr6.2:87163341-87163360 MS.gene68989:intron 45.0%
CCTTCACAACAGAACCTTGT+TGG + chr6.2:87163344-87163363 None:intergenic 45.0%
GATGGTGATTGGATGCTAGT+TGG - chr6.2:87165086-87165105 MS.gene68989:intron 45.0%
! GCGACTTTTGCACTTTTCCA+TGG + chr6.2:87165799-87165818 None:intergenic 45.0%
! GTCTTAACTCAGTAGCCTTG+AGG + chr6.2:87163167-87163186 None:intergenic 45.0%
! GTTGGTTCATATGCTAAGGG+TGG - chr6.2:87164835-87164854 MS.gene68989:intron 45.0%
! TTGCACTTTTCCATGGCTCT+TGG + chr6.2:87165792-87165811 None:intergenic 45.0%
!! GTAGGTCAATTTGGCTCTCA+TGG - chr6.2:87164978-87164997 MS.gene68989:intron 45.0%
!! TGCTAGTTGGTGATGTTCCA+TGG - chr6.2:87165099-87165118 MS.gene68989:intron 45.0%
!! TTCCTGAAAGAACGGATTGG+TGG + chr6.2:87164338-87164357 None:intergenic 45.0%
!! TAAAAATAAAGAATTTATAT+TGG - chr6.2:87165736-87165755 MS.gene68989:CDS 5.0%
!!! AAATTTTTTTATATAGTTTT+TGG - chr6.2:87165330-87165349 MS.gene68989:intron 5.0%
CTCTCTGGTGATTCAGAACC+AGG + chr6.2:87163198-87163217 None:intergenic 50.0%
GGCCTAACAGCCACAAACAT+CGG + chr6.2:87164785-87164804 None:intergenic 50.0%
GTCCGATGTTTGTGGCTGTT+AGG - chr6.2:87164780-87164799 MS.gene68989:intron 50.0%
TGCCCCATACTTGAGGAAAG+TGG - chr6.2:87164448-87164467 MS.gene68989:CDS 50.0%
TTATGCAGCACCAAGAGCCA+TGG - chr6.2:87165779-87165798 MS.gene68989:CDS 50.0%
GGCCACCAATCCGTTCTTTC+AGG - chr6.2:87164333-87164352 MS.gene68989:intron 55.0%
TGGATGGTGCCCCATACTTG+AGG - chr6.2:87164441-87164460 MS.gene68989:CDS 55.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 87163117 87165824 87163117 ID=MS.gene68989
chr6.2 mRNA 87163117 87165824 87163117 ID=MS.gene68989.t1;Parent=MS.gene68989
chr6.2 exon 87165508 87165824 87165508 ID=MS.gene68989.t1.exon1;Parent=MS.gene68989.t1
chr6.2 CDS 87165508 87165824 87165508 ID=cds.MS.gene68989.t1;Parent=MS.gene68989.t1
chr6.2 exon 87164399 87164625 87164399 ID=MS.gene68989.t1.exon2;Parent=MS.gene68989.t1
chr6.2 CDS 87164399 87164625 87164399 ID=cds.MS.gene68989.t1;Parent=MS.gene68989.t1
chr6.2 exon 87163818 87163959 87163818 ID=MS.gene68989.t1.exon3;Parent=MS.gene68989.t1
chr6.2 CDS 87163818 87163959 87163818 ID=cds.MS.gene68989.t1;Parent=MS.gene68989.t1
chr6.2 exon 87163368 87163429 87163368 ID=MS.gene68989.t1.exon4;Parent=MS.gene68989.t1
chr6.2 CDS 87163368 87163429 87163368 ID=cds.MS.gene68989.t1;Parent=MS.gene68989.t1
chr6.2 exon 87163117 87163154 87163117 ID=MS.gene68989.t1.exon5;Parent=MS.gene68989.t1
chr6.2 CDS 87163117 87163154 87163117 ID=cds.MS.gene68989.t1;Parent=MS.gene68989.t1
Gene Sequence

>MS.gene68989

ATGGAAAGTTCTGACAAATTTTCTCAAAGAAGTAACAATGGCTTGAACCTCAAGGCTACTGAGTTAAGACTTGGTTTACCTGGTTCTGAATCACCAGAGAGAGATAATGATCTTCTTGAAGAAAAAAATGCATACTCTTTATGCATGCTTAATGGTTTATTTTCAAGGGCAAAAAGAGGTTTTTCAGATGCCATTGAAATTGGTTTGAAGAAAGATAGTTCCAACCAACAAGGTTCTGTTGTGAAGGATAGAATTCAACAGTCTTCAAATCCTTTGAATGAGAAGAAGAAGTCTCAGATATATGGTTCAGCTGCAAAGTACTTTCATTTTCTTTAGCTTTACTATTTTTCTTTTCTTTGTTGTTTTTTGAGAGAAATGAAAATTTTGTGTTAAATTTCTAGGCTTTATTTGGATATAGTATAAGCAATTATCATATAAGGCCTTATGTAGAAGTTATTTCAATACCAATGATAAAAGAAAATAAATATGTTTTTATATAAGTTATTTTCACAAGCTATTATGGAGAGCTTATGAAAATAAGCTCCGTAAGCGATTTTCCATAAGCTGATAATATCATAAGAACATGTTATAAGTTGTTTTTCATAATCTCTTACAAACAGTCTTATAAATGCTTATGTCTTTAAATAAGTTCAAATAAGTCGATCAAAATGCGCTCTTAGTAGTTTTTTGTTATTATATCATGTTTTACATGTCTAAATATTTTACCACTTTCATTGTTGATTTACTGTGTCTAGATTTTTCTAATATTTGTGTGTGCTAATCAAGTGTTGAAAGCAAGAAGAAAATAAGATGATTGAGAGAAAGATTAAATGACTTTTTACTTTTTATCTTGTAAATTTTGATCTTATGTTAGCCTATAGTGTTAATGATCCTCTTGTTTGAGTTTATCTATTAACGTAAGCACTTGTGAGACTATTTAGGAGAGCTTATCAAAACAACTTATCACATCTCCGTACAATGTTTTCAGCTTATTCCATAAGCTCTCAACCATAATAACCTATGAAAACAACTTATAGCTTATATAAAAATATTTTGATTTTGTTTAAGCTTTTGTTGTATAAATAAATTATACTTATGCACTTCTGCTATAAGTACTAATTAAACTATTTATCCAAATATAAATTTTGAAGTTATAATCAAATCCTATGGTTTAATTTTTGTCTTCATTTCTGATCTAGGGAACAAATTGTAGGATGGCCACCAATCCGTTCTTTCAGGAAGAATTCAATGGCCACTCAATCTCAAAAGAATGATAATGATGATGTAGAAGCCAAATTTGGATGCCTTTATGTAAAAGTTAGCATGGATGGTGCCCCATACTTGAGGAAAGTGGATCTCAAATTTTTTGGCACTTACAAGGAACTATCTTCTGCCCTAGAAAAGATGTTTAGTTGTTTTACAATCAGTGAGTTTTTTTTTATTACTTGAAAATTACTCTCTCATTTTGCTTGTGCACTAGGTTTAAGATAACAATCTCGGGTGCGTCATGATCGTTGATATTGTGGAGAATTACGGTAAAACGCGGCTGATGTTACTTTAATATATGTAGTACCGATTTTAGATTTAAGGCGTGTTCGACATGTTTTAGTATCCGTCATCGAGATGTTTTCAAATTATTACCTTTTCATTGTATCAGTGTTGTGTCCGATGTTTGTGGCTGTTAGGCCTTTATTTAAAACGTACATAACTAAAGGGTAGTTGGTTCATATGCTAAGGGTGGTTGATTCCATTGAGCTAAGGAGATTTTTAAAGGAGTGATATTAATAGGTCAAATAATTTTTTACTAATAAAATGTTCATCATGTAGCTGATTTTGATGATGTTTTTGATGAATGAAAAGTGTAGGTCAATTTGGCTCTCATGGAGTTTTTGGTCAAGGTAATTTGTGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTCCTCACCTATGAAGATAAAGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGAAGTAAGTGCATATTTTGTCTCACATGGATTCATGAACTTGTGATTGAGTCCATAAACTTTTGAATAATATGTAACTAGATATATATGAACTTTTATATAATTTGATTATTTGAAAGTTTAGGTCTGCATAAAAATTCAAATACTCAATTACAAATTCTGAGAAGTTAAAAAATCTAATTTCAAATTTTTTAGTTCAAAGAATTATTGAAATTTTTTTATATAGTTTTTGGACCGGCTAAATAATTGAACCTAAAATATATAACGTTGTTGCAAATTAATGGAAATTATATTACGAAAAGGATATTATTTTGTTTATCTGAAAAATGCAATAATAGAAAGAACAAAATGATGAGTTTTTAACTCAAATGTTTTTATTTTTGTTGTTTTAGGATGTTCATTGACTCTTGCAAGAGGTTAAGGATAATGAAAAGTTCTGAAGCAATTGGATTAGGTGAGTCTCACATATATGATAATCTCTGTCTCAAATATCTCTTAAAGGATCATTGATGATATAGATACTTTTTAAAACCATATGGCAAGTACATATTGTAATAAACCTTAGAGGTCAAAATTGGATTTATTAAACATTGAAAAAAAAATCACAAATATCAAATAAAAATAAAGAATTTATATTGGTATATGATTATCCATCTGATTTATGCAGCACCAAGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG
Protein sequence

>MS.gene68989.t1

MESSDKFSQRSNNGLNLKATELRLGLPGSESPERDNDLLEEKNAYSLCMLNGLFSRAKRGFSDAIEIGLKKDSSNQQGSVVKDRIQQSSNPLNEKKKSQIYGSAAKEQIVGWPPIRSFRKNSMATQSQKNDNDDVEAKFGCLYVKVSMDGAPYLRKVDLKFFGTYKELSSALEKMFSCFTISQFGSHGVFGQGNLCESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWKMFIDSCKRLRIMKSSEAIGLAPRAMEKCKSRN