AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036278

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036278.t1 MTR_5g030710 96.285 323 12 0 1 323 1 323 0.0 651
MS.gene036278.t1 MTR_8g067530 71.098 346 67 6 1 323 9 344 7.72e-173 483
MS.gene036278.t1 MTR_5g067350 59.494 316 102 11 21 323 33 335 1.97e-112 330
MS.gene036278.t1 MTR_2g101500 50.588 340 110 10 16 323 1 314 1.48e-99 296
MS.gene036278.t1 MTR_6g488150 54.380 274 78 6 51 323 15 242 3.54e-90 270
MS.gene036278.t1 MTR_8g103030 50.000 298 107 8 40 323 12 281 1.91e-87 264
MS.gene036278.t1 MTR_5g067350 53.200 250 94 10 21 257 33 272 2.50e-66 209
MS.gene036278.t1 MTR_1g080860 46.570 277 94 9 51 323 15 241 1.15e-64 204
MS.gene036278.t1 MTR_1g080860 46.570 277 94 9 51 323 15 241 1.37e-64 204
MS.gene036278.t1 MTR_1g093240 45.620 274 91 6 51 323 8 224 1.31e-63 201
MS.gene036278.t1 MTR_1g093240 46.350 274 89 7 51 323 8 224 1.39e-63 201
MS.gene036278.t1 MTR_1g070520 62.658 158 53 3 170 323 78 233 1.05e-61 197
MS.gene036278.t1 MTR_7g096090 62.162 148 53 2 176 323 94 238 3.40e-60 193
MS.gene036278.t1 MTR_1g070830 40.143 279 78 9 48 323 9 201 5.82e-52 170
MS.gene036278.t1 MTR_1g093240 44.488 254 83 7 51 303 8 204 1.73e-51 169
MS.gene036278.t1 MTR_1g076270 45.263 190 70 5 134 323 23 178 5.49e-48 159
MS.gene036278.t1 MTR_1g093350 45.263 190 70 5 134 323 23 178 5.49e-48 159
MS.gene036278.t1 MTR_6g488150 47.115 208 63 6 51 257 15 176 6.69e-48 159
MS.gene036278.t1 MTR_1g040675 37.363 273 80 8 51 323 1 182 2.43e-46 155
MS.gene036278.t1 MTR_1g040675 35.968 253 71 8 51 303 1 162 1.39e-36 129
MS.gene036278.t1 MTR_1g069495 43.750 176 67 6 180 323 81 256 1.70e-34 127
MS.gene036278.t1 MTR_4g011880 50.000 146 43 4 178 323 51 166 8.20e-34 122
MS.gene036278.t1 MTR_8g014520 39.583 192 93 6 151 319 69 260 5.08e-33 123
MS.gene036278.t1 MTR_8g014520 39.583 192 93 6 151 319 69 260 5.39e-33 123
MS.gene036278.t1 MTR_2g100780 39.888 178 85 4 163 319 78 254 9.50e-32 120
MS.gene036278.t1 MTR_2g100780 39.888 178 85 4 163 319 78 254 1.28e-31 119
MS.gene036278.t1 MTR_2g102490 47.788 113 47 3 209 318 80 183 2.33e-29 111
MS.gene036278.t1 MTR_4g124300 34.000 150 66 5 175 318 60 182 9.21e-20 85.5
MS.gene036278.t1 MTR_3g106850 29.518 166 84 4 162 319 69 209 5.66e-19 84.3
MS.gene036278.t1 MTR_1g085750 41.818 110 49 3 214 323 82 176 9.62e-18 79.7
MS.gene036278.t1 MTR_7g110790 41.176 102 46 2 215 316 68 155 1.10e-16 76.6
MS.gene036278.t1 MTR_4g115075 28.105 153 84 3 166 316 77 205 3.23e-14 70.9
MS.gene036278.t1 MTR_1g109510 28.302 159 87 5 159 316 36 168 1.39e-12 65.5
MS.gene036278.t1 MTR_1g085750 41.111 90 39 2 214 303 82 157 4.31e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036278.t1 AT2G22670 67.203 311 70 9 21 323 21 307 9.18e-135 385
MS.gene036278.t1 AT2G22670 67.203 311 70 9 21 323 21 307 9.18e-135 385
MS.gene036278.t1 AT2G22670 67.203 311 70 9 21 323 21 307 1.05e-134 385
MS.gene036278.t1 AT2G22670 67.203 311 70 9 21 323 21 307 1.05e-134 385
MS.gene036278.t1 AT2G22670 67.203 311 70 9 21 323 38 324 1.57e-134 385
MS.gene036278.t1 AT5G65670 59.177 316 108 6 13 323 25 324 6.39e-124 358
MS.gene036278.t1 AT5G65670 59.177 316 108 6 13 323 25 324 7.77e-124 358
MS.gene036278.t1 AT4G29080 47.678 323 122 8 16 323 3 293 1.74e-87 265
MS.gene036278.t1 AT4G14550 45.421 273 92 5 51 323 1 216 5.84e-68 212
MS.gene036278.t1 AT4G14550 46.154 273 90 6 51 323 1 216 7.96e-68 212
MS.gene036278.t1 AT3G04730 42.509 287 87 6 51 323 2 224 1.75e-63 201
MS.gene036278.t1 AT1G04250 43.321 277 91 8 49 323 5 217 7.46e-63 199
MS.gene036278.t1 AT3G23050 43.310 284 91 8 51 323 6 230 1.31e-61 196
MS.gene036278.t1 AT4G14550 43.651 252 85 5 51 302 1 195 3.33e-55 178
MS.gene036278.t1 AT3G23050 41.667 264 84 8 51 303 6 210 7.06e-49 162
MS.gene036278.t1 AT1G04240 55.034 149 46 4 175 323 58 185 2.14e-47 158
MS.gene036278.t1 AT1G04240 55.034 149 46 4 175 323 158 285 1.36e-46 159
MS.gene036278.t1 AT5G43700 50.336 149 51 4 175 323 56 181 1.39e-42 145
MS.gene036278.t1 AT3G23030 51.007 149 41 3 175 323 54 170 5.94e-41 141
MS.gene036278.t1 AT3G23030 51.007 149 41 3 175 323 141 257 2.51e-40 142
MS.gene036278.t1 AT4G28640 43.750 176 72 4 166 322 73 240 5.57e-37 133
MS.gene036278.t1 AT4G28640 43.750 176 72 4 166 322 73 240 6.24e-37 133
MS.gene036278.t1 AT2G33310 44.134 179 71 4 166 323 60 230 7.33e-37 132
MS.gene036278.t1 AT2G33310 44.134 179 71 4 166 323 60 230 7.33e-37 132
MS.gene036278.t1 AT1G15580 44.828 145 49 2 174 318 46 159 1.56e-36 129
MS.gene036278.t1 AT4G28640 44.767 172 76 4 166 322 73 240 4.20e-36 132
MS.gene036278.t1 AT1G52830 43.919 148 55 4 176 323 65 184 6.68e-36 128
MS.gene036278.t1 AT2G33310 44.444 180 70 5 166 323 60 231 6.98e-36 130
MS.gene036278.t1 AT1G04550 42.458 179 73 4 166 323 54 223 7.97e-35 127
MS.gene036278.t1 AT3G15540 45.342 161 62 4 164 323 53 188 1.01e-34 125
MS.gene036278.t1 AT4G14560 48.276 145 45 3 176 320 50 164 5.70e-34 122
MS.gene036278.t1 AT4G14550 40.580 207 66 5 51 256 1 151 3.48e-33 121
MS.gene036278.t1 AT3G16500 40.523 153 72 3 182 319 104 252 1.69e-30 116
MS.gene036278.t1 AT3G16500 40.523 153 72 3 182 319 104 252 1.95e-30 116
MS.gene036278.t1 AT1G04100 38.922 167 74 4 183 323 95 259 6.08e-30 115
MS.gene036278.t1 AT1G51950 38.608 158 73 4 182 319 97 250 1.53e-27 108
MS.gene036278.t1 AT3G23050 36.866 217 69 7 51 256 6 165 1.07e-26 103
MS.gene036278.t1 AT5G25890 39.583 144 64 3 180 323 47 167 2.37e-26 103
MS.gene036278.t1 AT3G17600 36.774 155 68 6 164 316 28 154 4.96e-24 96.3
MS.gene036278.t1 AT3G62100 43.137 102 43 2 215 316 82 168 5.96e-20 85.9
MS.gene036278.t1 AT2G46990 40.385 104 47 1 215 318 84 172 2.36e-19 84.3
MS.gene036278.t1 AT3G62100 41.573 89 37 2 215 303 82 155 2.49e-14 70.1
MS.gene036278.t1 AT2G46990 38.202 89 40 1 215 303 84 157 1.81e-13 67.8
MS.gene036278.t1 AT1G15050 37.143 105 50 1 217 321 62 150 4.65e-13 66.2
MS.gene036278.t1 AT1G15050 37.143 105 50 1 217 321 94 182 9.84e-13 66.2
MS.gene036278.t1 AT4G32280 29.703 101 51 2 216 316 118 198 4.05e-12 65.1
MS.gene036278.t1 AT4G32280 25.000 168 75 4 180 316 93 240 4.88e-12 65.5
MS.gene036278.t1 AT1G04550 36.842 114 51 3 166 258 54 167 7.42e-12 63.5
MS.gene036278.t1 AT2G01200 33.333 126 64 2 196 321 83 188 7.62e-12 63.9
MS.gene036278.t1 AT2G01200 33.333 126 64 2 196 321 83 188 7.62e-12 63.9

Find 98 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTCATCATTGTTGTTCT+TGG 0.148811 5.1:+20936109 None:intergenic
TTGCAGAAGAATGTGGTTTC+GGG 0.253040 5.1:-20936648 MS.gene036278:CDS
GGTAAGTTTAATGCTAATTC+AGG 0.253741 5.1:-20936493 MS.gene036278:CDS
TAGATCTACCTTCCTTAGAT+AGG 0.286933 5.1:+20936031 None:intergenic
TTTGCAGAAGAATGTGGTTT+CGG 0.361512 5.1:-20936649 MS.gene036278:CDS
GAGTTGAGGTTGGGTCTTCC+CGG 0.364318 5.1:-20936765 MS.gene036278:CDS
GGCCTCCTATAAGATCATTT+AGG 0.368510 5.1:-20936154 MS.gene036278:CDS
GGTTCTGACGCCATTGGGTT+AGG 0.402217 5.1:-20933484 None:intergenic
TGGATGGTGCTCCCTATCTA+AGG 0.406442 5.1:-20936043 MS.gene036278:CDS
GATGGAGACTGGATGCTTGT+AGG 0.411867 5.1:-20935727 MS.gene036278:CDS
AAAAGTGAACTTGAATTTGA+AGG 0.413246 5.1:-20936793 MS.gene036278:CDS
AAGGCTACTGAGTTGAGGTT+GGG 0.419598 5.1:-20936774 MS.gene036278:CDS
GGATTTGCTGATACCGTTGA+TGG 0.420125 5.1:-20936615 MS.gene036278:CDS
TCAATCACCCGAGAGGGAAA+TGG 0.422310 5.1:-20936739 MS.gene036278:CDS
GTCTCCGACGGCGGTGGCTA+CGG 0.424136 5.1:-20936931 MS.gene036278:CDS
GACGATGGAACGGAATTACT+TGG 0.426582 5.1:-20936880 MS.gene036278:CDS
CCTTTACTTCCTGCAAAAGA+TGG 0.428383 5.1:-20936672 MS.gene036278:CDS
ATGGAGACTGGATGCTTGTA+GGG 0.429252 5.1:-20935726 MS.gene036278:CDS
AGGAACTACTGGTCATAATC+AGG 0.436346 5.1:-20936371 MS.gene036278:CDS
CTCTCGGGTGATTGAGATCC+GGG 0.441176 5.1:+20936747 None:intergenic
TGAAGGGTTCTGACGCCATT+GGG 0.446469 5.1:-20933489 MS.gene036278:CDS
ATTGTTGTTCTTGGAAGCAT+TGG 0.451257 5.1:+20936118 None:intergenic
ATCCGAATCCATTTCCCTCT+CGG 0.452945 5.1:+20936731 None:intergenic
TCCGAATCCATTTCCCTCTC+GGG 0.455237 5.1:+20936732 None:intergenic
ACCCGAGAGGGAAATGGATT+CGG 0.455743 5.1:-20936733 MS.gene036278:CDS
CCTCTCGGGTGATTGAGATC+CGG 0.459016 5.1:+20936746 None:intergenic
TGTGGTTCCCATGGAGCTCC+AGG 0.460461 5.1:-20935826 MS.gene036278:CDS
CTTTCCTGCAAAACCTTACT+CGG 0.461106 5.1:+20936409 None:intergenic
GCCTAGACCTGGTGGAGCTC+AGG 0.463855 5.1:-20936452 MS.gene036278:CDS
GCAGGTGCTGCTTCTATCGC+TGG 0.467925 5.1:-20936349 MS.gene036278:CDS
CAGAAGGCTGAAAATAATGA+AGG 0.471961 5.1:-20933506 MS.gene036278:CDS
ATGAAGGGTTCTGACGCCAT+TGG 0.475878 5.1:-20933490 MS.gene036278:CDS
GCCTGAGCTCCACCAGGTCT+AGG 0.476166 5.1:+20936451 None:intergenic
GAAGGCTACTGAGTTGAGGT+TGG 0.492437 5.1:-20936775 MS.gene036278:CDS
GTAAGTTTAATGCTAATTCA+GGG 0.493399 5.1:-20936492 MS.gene036278:CDS
AGATCTACCTTCCTTAGATA+GGG 0.496829 5.1:+20936032 None:intergenic
GACGGCGGTGGCTACGGAGG+AGG 0.499617 5.1:-20936925 MS.gene036278:CDS
AGTGAAAGAAATGCCGAGTA+AGG 0.502631 5.1:-20936422 MS.gene036278:CDS
ACAAAGAGTGCAGTGGGACC+TGG 0.505055 5.1:+20936077 None:intergenic
GTGGTTTCGGGGAATAAGAG+AGG 0.508267 5.1:-20936636 MS.gene036278:CDS
TTCCTAAATGATCTTATAGG+AGG 0.509027 5.1:+20936152 None:intergenic
GCAGGCCAGTGTGGTTCCCA+TGG 0.511832 5.1:-20935835 MS.gene036278:intron
CATATTCTGAACCATGCAAA+AGG 0.516368 5.1:+20935770 None:intergenic
TGCTTGTAGGGGACGTACCA+TGG 0.519764 5.1:-20935714 MS.gene036278:CDS
TTCTATCGCTGGTTGTGCAC+CGG 0.524204 5.1:-20936338 MS.gene036278:CDS
TGTGACAGGGCACAAGTTGT+TGG 0.524224 5.1:-20936179 MS.gene036278:intron
CAAGAACAACAATGATGAAG+TGG 0.532840 5.1:-20936108 MS.gene036278:CDS
CTCACTTATGAAGATAAAGA+TGG 0.536028 5.1:-20935745 MS.gene036278:CDS
ACCTTCACAAAGAGTGCAGT+GGG 0.538673 5.1:+20936071 None:intergenic
GGAAATGTCTCCGACGGCGG+TGG 0.539855 5.1:-20936937 None:intergenic
GCGGTGGCTACGGAGGAGGA+AGG 0.542724 5.1:-20936921 MS.gene036278:CDS
ATGAAGATAAAGATGGAGAC+TGG 0.547731 5.1:-20935738 MS.gene036278:CDS
GGGATTGTCTGATTGTTCAT+CGG 0.548946 5.1:-20936859 MS.gene036278:CDS
AACAGCTGAACATCTTCTCA+AGG 0.549658 5.1:+20935973 None:intergenic
GAGCTCCATGGGAACCACAC+TGG 0.553553 5.1:+20935830 None:intergenic
GATGAAGTGGATGGAAAACC+AGG 0.553790 5.1:-20936095 MS.gene036278:CDS
TGTGCAGCTAGAGGAACTAC+TGG 0.555927 5.1:-20936382 MS.gene036278:CDS
GTGCTCGCCTGAGCTCCACC+AGG 0.561039 5.1:+20936445 None:intergenic
GCTTGTAGGGGACGTACCAT+GGG 0.563761 5.1:-20935713 MS.gene036278:CDS
GATTTGCTGATACCGTTGAT+GGG 0.566751 5.1:-20936614 MS.gene036278:CDS
TTTGTGAAGGTCAGCATGGA+TGG 0.570866 5.1:-20936059 MS.gene036278:CDS
GCAGGAAGTAAAGGGAACAA+TGG 0.573981 5.1:+20936681 None:intergenic
ACAGGGCACAAGTTGTTGGT+TGG 0.575157 5.1:-20936175 MS.gene036278:intron
AGATGGTTTGCAGAAGAATG+TGG 0.577585 5.1:-20936655 MS.gene036278:CDS
GCGCAAACTGTCGTCGACGA+TGG 0.579580 5.1:-20936895 MS.gene036278:CDS
TAAAGAACATCTTACTCCCA+TGG 0.581718 5.1:+20935697 None:intergenic
TCCTCCGTAGCCACCGCCGT+CGG 0.586598 5.1:+20936927 None:intergenic
CGGTGGCTACGGAGGAGGAA+GGG 0.593859 5.1:-20936920 MS.gene036278:CDS
ACTACTGGTCATAATCAGGC+AGG 0.595833 5.1:-20936367 MS.gene036278:CDS
ACGATGGAACGGAATTACTT+GGG 0.597669 5.1:-20936879 MS.gene036278:CDS
CGGATCTCAATCACCCGAGA+GGG 0.597943 5.1:-20936745 MS.gene036278:CDS
AACTGTCGTCGACGATGGAA+CGG 0.600872 5.1:-20936890 MS.gene036278:CDS
TCCCACTGCACTCTTTGTGA+AGG 0.601153 5.1:-20936072 MS.gene036278:CDS
AACAACAATGATGAAGTGGA+TGG 0.601893 5.1:-20936104 MS.gene036278:CDS
TAGGGAAATGTCTCCGACGG+CGG 0.603529 5.1:-20936940 None:intergenic
TCCGACGGCGGTGGCTACGG+AGG 0.612859 5.1:-20936928 MS.gene036278:CDS
TGATGAGTGAGAGCAAGCTG+AGG 0.616205 5.1:-20935795 MS.gene036278:CDS
ATGCTATCGCCTAGACCTGG+TGG 0.616679 5.1:-20936460 MS.gene036278:CDS
ATTGTCTGATTGTTCATCGG+TGG 0.617997 5.1:-20936856 MS.gene036278:CDS
TGCAGAAGAATGTGGTTTCG+GGG 0.623774 5.1:-20936647 MS.gene036278:CDS
GTGATGCTATCGCCTAGACC+TGG 0.627514 5.1:-20936463 MS.gene036278:CDS
TGGTGCTCCCTATCTAAGGA+AGG 0.627651 5.1:-20936039 MS.gene036278:CDS
GATGAGTGAGAGCAAGCTGA+GGG 0.627937 5.1:-20935794 MS.gene036278:CDS
TGGCTACGGAGGAGGAAGGG+CGG 0.628102 5.1:-20936917 MS.gene036278:CDS
GAAAGGCCTTGTGCAGCTAG+AGG 0.628138 5.1:-20936391 MS.gene036278:CDS
AGAAGGCTGAAAATAATGAA+GGG 0.637227 5.1:-20933505 MS.gene036278:CDS
TGTTCATTGATACTTGCAGA+AGG 0.637954 5.1:-20933522 MS.gene036278:CDS
ATTTGAAGGCTACTGAGTTG+AGG 0.639042 5.1:-20936779 MS.gene036278:CDS
GACCTTCACAAAGAGTGCAG+TGG 0.642687 5.1:+20936070 None:intergenic
CACCTGCGAAAACCCATCAA+CGG 0.645296 5.1:+20936602 None:intergenic
TGTGTAATGGCAGGCCAGTG+TGG 0.646395 5.1:-20935844 MS.gene036278:intron
GGTTAGGGAAATGTCTCCGA+CGG 0.647341 5.1:-20936943 None:intergenic
ACAGCTGAACATCTTCTCAA+GGG 0.651538 5.1:+20935974 None:intergenic
TGGAGACTGGATGCTTGTAG+GGG 0.651918 5.1:-20935725 MS.gene036278:CDS
GTAGTTCCTCTAGCTGCACA+AGG 0.655154 5.1:+20936385 None:intergenic
ACTCTTTGTGAAGGTCAGCA+TGG 0.660309 5.1:-20936063 MS.gene036278:CDS
AGAACACATACCTAACCCAA+TGG 0.669918 5.1:+20933474 None:intergenic
CCGGATCTCAATCACCCGAG+AGG 0.692711 5.1:-20936746 MS.gene036278:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTAATCGAAAATTA+GGG - chr5.1:20935750-20935769 MS.gene036278:CDS 10.0%
!! ACAAATTAAGAAATACAAAA+AGG - chr5.1:20934999-20935018 MS.gene036278:intron 15.0%
!! ATCTTATATACAAATATTGT+TGG - chr5.1:20935372-20935391 MS.gene036278:intron 15.0%
!! TCTTATATACAAATATTGTT+GGG - chr5.1:20935373-20935392 MS.gene036278:intron 15.0%
!!! AATTTTTAATCGAAAATTAG+GGG - chr5.1:20935751-20935770 MS.gene036278:CDS 15.0%
!!! GTAATTTTTAATCGAAAATT+AGG - chr5.1:20935749-20935768 MS.gene036278:CDS 15.0%
!!! TATTATAGTTCTGTAATTTA+CGG - chr5.1:20936745-20936764 MS.gene036278:CDS 15.0%
!!! TATTTTTTTTGAAGAAATTC+AGG - chr5.1:20936453-20936472 MS.gene036278:CDS 15.0%
!! ATATGAAAATTTACCATATC+AGG + chr5.1:20934220-20934239 None:intergenic 20.0%
!!! AATAACTTTGCTTTCTAAAA+AGG + chr5.1:20935937-20935956 None:intergenic 20.0%
!!! ATAACTTTGCTTTCTAAAAA+GGG + chr5.1:20935936-20935955 None:intergenic 20.0%
!!! ATTATAGTTCTGTAATTTAC+GGG - chr5.1:20936746-20936765 MS.gene036278:CDS 20.0%
!!! ATTTTTAATCGAAAATTAGG+GGG - chr5.1:20935752-20935771 MS.gene036278:CDS 20.0%
!!! GTAATATATTCTACTTTTGT+AGG + chr5.1:20935081-20935100 None:intergenic 20.0%
!!! TATTTTTGTTCTGAAATCTT+TGG - chr5.1:20934547-20934566 MS.gene036278:intron 20.0%
!!! TGTATTTCTTAATTTGTATG+CGG + chr5.1:20934996-20935015 None:intergenic 20.0%
!!! TTTACAATATTTGTTATGCA+GGG - chr5.1:20933904-20933923 MS.gene036278:intron 20.0%
!!! TTTTTCCTAAATGATCTTAT+AGG + chr5.1:20934272-20934291 None:intergenic 20.0%
! AAAAGTGAACTTGAATTTGA+AGG - chr5.1:20933625-20933644 MS.gene036278:intron 25.0%
! AAACACACCAATAGTTATTA+GGG + chr5.1:20935058-20935077 None:intergenic 25.0%
! AAACGACACTCATTTATAAA+CGG + chr5.1:20934966-20934985 None:intergenic 25.0%
! AAATACTACCTAACATTCAA+GGG - chr5.1:20935571-20935590 MS.gene036278:intron 25.0%
! AAATTTACCATATCAGGATT+AGG + chr5.1:20934214-20934233 None:intergenic 25.0%
! ATTGGCAAATTAGTATGAAT+GGG - chr5.1:20936221-20936240 MS.gene036278:intron 25.0%
! GTAAGATGTTCTTTAAATTC+TGG - chr5.1:20934729-20934748 MS.gene036278:intron 25.0%
! GTAAGTTTAATGCTAATTCA+GGG - chr5.1:20933926-20933945 MS.gene036278:intron 25.0%
! GTATCTTAAAACCAAGAAAA+TGG - chr5.1:20936807-20936826 MS.gene036278:CDS 25.0%
! TTACAGAACTATAATACTAG+AGG + chr5.1:20936741-20936760 None:intergenic 25.0%
!! ACTGTAAATCCATTTAAGAT+GGG + chr5.1:20936404-20936423 None:intergenic 25.0%
!! GTAAATTTTCATATGTGACA+GGG - chr5.1:20934226-20934245 MS.gene036278:intron 25.0%
!! TAAACTAATGCATTTGAGTT+GGG - chr5.1:20936142-20936161 MS.gene036278:CDS 25.0%
!!! AATGTATGTTCACTTTTCAA+TGG + chr5.1:20935155-20935174 None:intergenic 25.0%
!!! GTTTACAATATTTGTTATGC+AGG - chr5.1:20933903-20933922 MS.gene036278:intron 25.0%
!!! GTTTTGTTTTAGTGGTTTAA+TGG - chr5.1:20933879-20933898 MS.gene036278:intron 25.0%
!!! TTATAAATGAGTGTCGTTTA+AGG - chr5.1:20934967-20934986 MS.gene036278:intron 25.0%
!!! TTGATATTTTTTCAAGCAAG+TGG + chr5.1:20935904-20935923 None:intergenic 25.0%
AAACTACCCCTAATAACTAT+TGG - chr5.1:20935048-20935067 MS.gene036278:intron 30.0%
AACACACCAATAGTTATTAG+GGG + chr5.1:20935057-20935076 None:intergenic 30.0%
AATAAGTCAACCCAGAAATA+TGG + chr5.1:20935309-20935328 None:intergenic 30.0%
ACCAATTGATCCATATTTCT+GGG - chr5.1:20935296-20935315 MS.gene036278:intron 30.0%
AGAAGGCTGAAAATAATGAA+GGG - chr5.1:20936913-20936932 MS.gene036278:CDS 30.0%
AGAGATTGTCGTAATGTATA+TGG - chr5.1:20935232-20935251 MS.gene036278:intron 30.0%
AGATGTGATACCAAGTATAA+TGG - chr5.1:20935845-20935864 MS.gene036278:intron 30.0%
ATAGTTAGAATATGGGGATT+TGG - chr5.1:20936290-20936309 MS.gene036278:intron 30.0%
ATAGTTATTAGGGGTAGTTT+AGG + chr5.1:20935048-20935067 None:intergenic 30.0%
ATCATTTAGGAAAAACTCGA+TGG - chr5.1:20934277-20934296 MS.gene036278:intron 30.0%
CAAATACTACCTAACATTCA+AGG - chr5.1:20935570-20935589 MS.gene036278:intron 30.0%
CAATTTCCATGTATACTCAT+AGG - chr5.1:20935422-20935441 MS.gene036278:intron 30.0%
CACTGTAAATCCATTTAAGA+TGG + chr5.1:20936405-20936424 None:intergenic 30.0%
CATGCAATATCCATTATACT+TGG + chr5.1:20935858-20935877 None:intergenic 30.0%
CATTGGCAAATTAGTATGAA+TGG - chr5.1:20936220-20936239 MS.gene036278:intron 30.0%
CTAAACTAATGCATTTGAGT+TGG - chr5.1:20936141-20936160 MS.gene036278:CDS 30.0%
CTATGAGTATACATGGAAAT+TGG + chr5.1:20935424-20935443 None:intergenic 30.0%
CTCACTTATGAAGATAAAGA+TGG - chr5.1:20934673-20934692 MS.gene036278:intron 30.0%
CTGAACAAACATGTATGATT+TGG - chr5.1:20934168-20934187 MS.gene036278:intron 30.0%
CTTTGATTAAAATTCGCATG+CGG - chr5.1:20936605-20936624 MS.gene036278:CDS 30.0%
GAAACACACCAATAGTTATT+AGG + chr5.1:20935059-20935078 None:intergenic 30.0%
GGTAAGTTTAATGCTAATTC+AGG - chr5.1:20933925-20933944 MS.gene036278:intron 30.0%
TAGATATCCTAATCCTGATA+TGG - chr5.1:20934204-20934223 MS.gene036278:intron 30.0%
TCAACATACTCTCTTTGATT+GGG + chr5.1:20936685-20936704 None:intergenic 30.0%
TCATTCGTCAAATTAAGAGA+TGG - chr5.1:20935683-20935702 MS.gene036278:intron 30.0%
TGTACACAACATTCATTTGA+GGG - chr5.1:20935112-20935131 MS.gene036278:intron 30.0%
TTATCTGCTTCATAACACAT+TGG - chr5.1:20936189-20936208 MS.gene036278:intron 30.0%
TTCAACATACTCTCTTTGAT+TGG + chr5.1:20936686-20936705 None:intergenic 30.0%
TTCCTAAATGATCTTATAGG+AGG + chr5.1:20934269-20934288 None:intergenic 30.0%
TTGGCAAATTAGTATGAATG+GGG - chr5.1:20936222-20936241 MS.gene036278:intron 30.0%
! ATTCATTCAGTCCATTTTCT+TGG + chr5.1:20936821-20936840 None:intergenic 30.0%
! ATTTAAGATGGGAGAAACAA+AGG + chr5.1:20936393-20936412 None:intergenic 30.0%
! GATTTTACTTACTTAGATGC+CGG + chr5.1:20934102-20934121 None:intergenic 30.0%
! GGTAAATTTTCATATGTGAC+AGG - chr5.1:20934225-20934244 MS.gene036278:intron 30.0%
! TTCATAACACATTGGCTATA+TGG - chr5.1:20936197-20936216 MS.gene036278:intron 30.0%
! TTTGATGAAGTTGGTTTATG+CGG - chr5.1:20933844-20933863 MS.gene036278:intron 30.0%
! TTTGTTTCTCCCATCTTAAA+TGG - chr5.1:20936392-20936411 MS.gene036278:CDS 30.0%
! TTTTCTCATCACACAAACTT+GGG + chr5.1:20933607-20933626 None:intergenic 30.0%
! TTTTTCTCATCACACAAACT+TGG + chr5.1:20933608-20933627 None:intergenic 30.0%
!! ATATGGATCAATTGGTCTTT+CGG + chr5.1:20935292-20935311 None:intergenic 30.0%
!!! AAGTGCATGTTTTGTTTTAG+TGG - chr5.1:20933871-20933890 MS.gene036278:intron 30.0%
AAAAGACAGGAAGAAACCTA+AGG + chr5.1:20935987-20936006 None:intergenic 35.0%
AAATTAGTATGAATGGGGTG+CGG - chr5.1:20936227-20936246 MS.gene036278:intron 35.0%
AACAACAATGATGAAGTGGA+TGG - chr5.1:20934314-20934333 MS.gene036278:intron 35.0%
AACAAGAACCCTTGAATGTT+AGG + chr5.1:20935582-20935601 None:intergenic 35.0%
AATCTTTGGCGATTGTGTAA+TGG - chr5.1:20934561-20934580 MS.gene036278:intron 35.0%
AATGAGCTGAAGTTTCTTAG+AGG + chr5.1:20936339-20936358 None:intergenic 35.0%
ACCCAGAAATATGGATCAAT+TGG + chr5.1:20935300-20935319 None:intergenic 35.0%
ACTTGATGAAAATGTGAGGA+GGG - chr5.1:20936266-20936285 MS.gene036278:intron 35.0%
AGATCTACCTTCCTTAGATA+GGG + chr5.1:20934389-20934408 None:intergenic 35.0%
AGGAATTGCAATTTAGTGAG+TGG + chr5.1:20936861-20936880 None:intergenic 35.0%
AGGAGGGAATAGTTAGAATA+TGG - chr5.1:20936282-20936301 MS.gene036278:intron 35.0%
ATGAAGATAAAGATGGAGAC+TGG - chr5.1:20934680-20934699 MS.gene036278:intron 35.0%
ATGAGCTGAAGTTTCTTAGA+GGG + chr5.1:20936338-20936357 None:intergenic 35.0%
ATTAGGGGTAGTTTAGGAAA+AGG + chr5.1:20935042-20935061 None:intergenic 35.0%
ATTTACGGGCTTGTCTATTT+AGG - chr5.1:20936760-20936779 MS.gene036278:CDS 35.0%
CAAGAACAACAATGATGAAG+TGG - chr5.1:20934310-20934329 MS.gene036278:intron 35.0%
CAGAAGGCTGAAAATAATGA+AGG - chr5.1:20936912-20936931 MS.gene036278:CDS 35.0%
CATATTCTGAACCATGCAAA+AGG + chr5.1:20934651-20934670 None:intergenic 35.0%
CATGATCAAATTCTTCAGTC+TGG + chr5.1:20936523-20936542 None:intergenic 35.0%
GACACTCATTTATAAACGGA+AGG + chr5.1:20934962-20934981 None:intergenic 35.0%
GACCAATTGATCCATATTTC+TGG - chr5.1:20935295-20935314 MS.gene036278:intron 35.0%
GAGGGAATAGTTAGAATATG+GGG - chr5.1:20936284-20936303 MS.gene036278:intron 35.0%
GGAATTGCAATTTAGTGAGT+GGG + chr5.1:20936860-20936879 None:intergenic 35.0%
GGAGGGAATAGTTAGAATAT+GGG - chr5.1:20936283-20936302 MS.gene036278:intron 35.0%
GTGTACACAACATTCATTTG+AGG - chr5.1:20935111-20935130 MS.gene036278:intron 35.0%
TAAAGAACATCTTACTCCCA+TGG + chr5.1:20934724-20934743 None:intergenic 35.0%
TACTTGATGAAAATGTGAGG+AGG - chr5.1:20936265-20936284 MS.gene036278:intron 35.0%
TAGATCTACCTTCCTTAGAT+AGG + chr5.1:20934390-20934409 None:intergenic 35.0%
TCTATCAACTCAACTACTCA+AGG - chr5.1:20934120-20934139 MS.gene036278:intron 35.0%
TGAAGAATTTGATCATGACC+AGG - chr5.1:20936526-20936545 MS.gene036278:intron 35.0%
TGGACTGAATGAATGACATA+AGG - chr5.1:20936827-20936846 MS.gene036278:CDS 35.0%
TGTTCATTGATACTTGCAGA+AGG - chr5.1:20936896-20936915 MS.gene036278:CDS 35.0%
TTAGGGGTAGTTTAGGAAAA+GGG + chr5.1:20935041-20935060 None:intergenic 35.0%
TTTGCAGAAGAATGTGGTTT+CGG - chr5.1:20933769-20933788 MS.gene036278:intron 35.0%
! AAGGAGTACAAGTCTAATTC+TGG + chr5.1:20934943-20934962 None:intergenic 35.0%
! AATCCTGCTACAGAATTTTC+TGG - chr5.1:20936008-20936027 MS.gene036278:CDS 35.0%
! ATTGTTGTTCTTGGAAGCAT+TGG + chr5.1:20934303-20934322 None:intergenic 35.0%
! CACTTCATCATTGTTGTTCT+TGG + chr5.1:20934312-20934331 None:intergenic 35.0%
! CATCTTTTGCAGGAAGTAAA+GGG + chr5.1:20933748-20933767 None:intergenic 35.0%
! CATTCATTTGAGGGCATAAT+TGG - chr5.1:20935121-20935140 MS.gene036278:intron 35.0%
! TCACTCATCATTTCTTTTCC+TGG + chr5.1:20934613-20934632 None:intergenic 35.0%
! TCCTGAAATTTGCTCAACAT+GGG - chr5.1:20935613-20935632 MS.gene036278:intron 35.0%
! TTCCTGAAATTTGCTCAACA+TGG - chr5.1:20935612-20935631 MS.gene036278:intron 35.0%
! TTTTGCTGCATAATGTTGCT+GGG - chr5.1:20936113-20936132 MS.gene036278:CDS 35.0%
! TTTTTGCTGCATAATGTTGC+TGG - chr5.1:20936112-20936131 MS.gene036278:CDS 35.0%
!! ATGTTCAGCTGTTTTACTCT+AGG - chr5.1:20934455-20934474 MS.gene036278:intron 35.0%
!! CATTTGAGTTGGGACAAAAA+TGG - chr5.1:20936152-20936171 MS.gene036278:CDS 35.0%
!! GGTGATTAGTTTGATGAAGT+TGG - chr5.1:20933835-20933854 MS.gene036278:intron 35.0%
!! GTTTTTGCTGATGATGAAGT+TGG - chr5.1:20934515-20934534 MS.gene036278:intron 35.0%
!! TATGGATCAATTGGTCTTTC+GGG + chr5.1:20935291-20935310 None:intergenic 35.0%
!!! AGACACTCATTTTGAAACGA+AGG - chr5.1:20935205-20935224 MS.gene036278:intron 35.0%
!!! CTATTTTGCTTCTGAGACAA+TGG - chr5.1:20934801-20934820 MS.gene036278:intron 35.0%
!!! GACACTCATTTTGAAACGAA+GGG - chr5.1:20935206-20935225 MS.gene036278:intron 35.0%
!!! TGTTTTTTCATGCCAAACAG+CGG - chr5.1:20935523-20935542 MS.gene036278:intron 35.0%
AACAGCTGAACATCTTCTCA+AGG + chr5.1:20934448-20934467 None:intergenic 40.0%
AATATGGGACCCACGTAATA+TGG - chr5.1:20936639-20936658 MS.gene036278:CDS 40.0%
AATTAGTATGAATGGGGTGC+GGG - chr5.1:20936228-20936247 MS.gene036278:intron 40.0%
ACAGCTGAACATCTTCTCAA+GGG + chr5.1:20934447-20934466 None:intergenic 40.0%
ACCCATGTTGAGCAAATTTC+AGG + chr5.1:20935617-20935636 None:intergenic 40.0%
ACGATGGAACGGAATTACTT+GGG - chr5.1:20933539-20933558 MS.gene036278:intron 40.0%
AGGAACTACTGGTCATAATC+AGG - chr5.1:20934047-20934066 MS.gene036278:intron 40.0%
AGTGAAAGAAATGCCGAGTA+AGG - chr5.1:20933996-20934015 MS.gene036278:intron 40.0%
ATTGTCTGATTGTTCATCGG+TGG - chr5.1:20933562-20933581 MS.gene036278:intron 40.0%
ATTTGAAGGCTACTGAGTTG+AGG - chr5.1:20933639-20933658 MS.gene036278:intron 40.0%
CATATTCAGCAACACAATCC+TGG + chr5.1:20936547-20936566 None:intergenic 40.0%
CCTTTACTTCCTGCAAAAGA+TGG - chr5.1:20933746-20933765 MS.gene036278:intron 40.0%
CTTTCCTGCAAAACCTTACT+CGG + chr5.1:20934012-20934031 None:intergenic 40.0%
GCGGCCAACCAAAATAATAT+GGG - chr5.1:20936624-20936643 MS.gene036278:CDS 40.0%
GGCCTCCTATAAGATCATTT+AGG - chr5.1:20934264-20934283 MS.gene036278:intron 40.0%
GGGATTGTCTGATTGTTCAT+CGG - chr5.1:20933559-20933578 MS.gene036278:intron 40.0%
GGGTACTTGATGAAAATGTG+AGG - chr5.1:20936262-20936281 MS.gene036278:intron 40.0%
TAGAATATGGGGATTTGGCA+TGG - chr5.1:20936295-20936314 MS.gene036278:intron 40.0%
TAGCCAGAAAATTCTGTAGC+AGG + chr5.1:20936014-20936033 None:intergenic 40.0%
TGAGCTGAAGTTTCTTAGAG+GGG + chr5.1:20936337-20936356 None:intergenic 40.0%
TGAGTGCCTATGAGTATACA+TGG + chr5.1:20935431-20935450 None:intergenic 40.0%
TGCGGCCAACCAAAATAATA+TGG - chr5.1:20936623-20936642 MS.gene036278:CDS 40.0%
TGTAGCAGGATTGAAAAGAC+AGG + chr5.1:20936000-20936019 None:intergenic 40.0%
TGTTGTGTACACTACTTCGA+AGG + chr5.1:20935103-20935122 None:intergenic 40.0%
TTGCAGAAGAATGTGGTTTC+GGG - chr5.1:20933770-20933789 MS.gene036278:intron 40.0%
! ACACATTGGCTATATGGCAT+TGG - chr5.1:20936203-20936222 MS.gene036278:intron 40.0%
! ACGTGGGTCCCATATTATTT+TGG + chr5.1:20936635-20936654 None:intergenic 40.0%
! AGATGGTTTGCAGAAGAATG+TGG - chr5.1:20933763-20933782 MS.gene036278:intron 40.0%
! CCATCTTTTGCAGGAAGTAA+AGG + chr5.1:20933749-20933768 None:intergenic 40.0%
! TTCTGCAAACCATCTTTTGC+AGG + chr5.1:20933758-20933777 None:intergenic 40.0%
!! ATATTGTTGGGTTGAGTCTC+AGG - chr5.1:20935385-20935404 MS.gene036278:intron 40.0%
!! GATTTGCTGATACCGTTGAT+GGG - chr5.1:20933804-20933823 MS.gene036278:intron 40.0%
!!! GGGTCCCATATTATTTTGGT+TGG + chr5.1:20936631-20936650 None:intergenic 40.0%
AAATTAGGGGGCTCATGTCA+TGG - chr5.1:20935764-20935783 MS.gene036278:CDS 45.0%
AATATGGGGATTTGGCATGG+AGG - chr5.1:20936298-20936317 MS.gene036278:intron 45.0%
ACTACTGGTCATAATCAGGC+AGG - chr5.1:20934051-20934070 MS.gene036278:intron 45.0%
ACTCTTTGTGAAGGTCAGCA+TGG - chr5.1:20934355-20934374 MS.gene036278:intron 45.0%
ACTTGTCCCACCATATTACG+TGG + chr5.1:20936652-20936671 None:intergenic 45.0%
ATATGGGGATTTGGCATGGA+GGG - chr5.1:20936299-20936318 MS.gene036278:intron 45.0%
ATCCGAATCCATTTCCCTCT+CGG + chr5.1:20933690-20933709 None:intergenic 45.0%
ATGCGCCCATTAGTTGTTCT+CGG + chr5.1:20935793-20935812 None:intergenic 45.0%
ATGGAGACTGGATGCTTGTA+GGG - chr5.1:20934692-20934711 MS.gene036278:intron 45.0%
ATTAGTATGAATGGGGTGCG+GGG - chr5.1:20936229-20936248 MS.gene036278:intron 45.0%
CTCATAGGCACTCACATTTG+TGG - chr5.1:20935437-20935456 MS.gene036278:intron 45.0%
CTTGTCCCACCATATTACGT+GGG + chr5.1:20936651-20936670 None:intergenic 45.0%
GAACATCCTGCACATGCATA+AGG + chr5.1:20936881-20936900 None:intergenic 45.0%
GACGATGGAACGGAATTACT+TGG - chr5.1:20933538-20933557 MS.gene036278:intron 45.0%
GATATCATACCACCGCTGTT+TGG + chr5.1:20935538-20935557 None:intergenic 45.0%
GATGAAGTGGATGGAAAACC+AGG - chr5.1:20934323-20934342 MS.gene036278:intron 45.0%
GCAATTCCTTATGCATGTGC+AGG - chr5.1:20936872-20936891 MS.gene036278:CDS 45.0%
GCAGGAAGTAAAGGGAACAA+TGG + chr5.1:20933740-20933759 None:intergenic 45.0%
GGCTACCGAGAACAACTAAT+GGG - chr5.1:20935785-20935804 MS.gene036278:CDS 45.0%
GTGTCTGTTCTTTGAGTGCT+AGG - chr5.1:20935483-20935502 MS.gene036278:intron 45.0%
GTTCAGCATGCACTATCCTT+AGG - chr5.1:20935968-20935987 MS.gene036278:CDS 45.0%
TGCAGAAGAATGTGGTTTCG+GGG - chr5.1:20933771-20933790 MS.gene036278:intron 45.0%
TGGCTACCGAGAACAACTAA+TGG - chr5.1:20935784-20935803 MS.gene036278:CDS 45.0%
TTTGGCGATTGTGTAATGGC+AGG - chr5.1:20934565-20934584 MS.gene036278:intron 45.0%
TTTGTGAAGGTCAGCATGGA+TGG - chr5.1:20934359-20934378 MS.gene036278:intron 45.0%
! AAGGCTACTGAGTTGAGGTT+GGG - chr5.1:20933644-20933663 MS.gene036278:intron 45.0%
! AATGCCGAGTAAGGTTTTGC+AGG - chr5.1:20934005-20934024 MS.gene036278:intron 45.0%
! ACCTTCACAAAGAGTGCAGT+GGG + chr5.1:20934350-20934369 None:intergenic 45.0%
! CGAGTAAGGTTTTGCAGGAA+AGG - chr5.1:20934010-20934029 MS.gene036278:intron 45.0%
! TTCTTTTCCTGGAGCTCCAT+GGG + chr5.1:20934602-20934621 None:intergenic 45.0%
! TTTCTTTTCCTGGAGCTCCA+TGG + chr5.1:20934603-20934622 None:intergenic 45.0%
! TTTTTCATGCCAAACAGCGG+TGG - chr5.1:20935526-20935545 MS.gene036278:intron 45.0%
!! GGATTTGCTGATACCGTTGA+TGG - chr5.1:20933803-20933822 MS.gene036278:intron 45.0%
AACTGTCGTCGACGATGGAA+CGG - chr5.1:20933528-20933547 MS.gene036278:intron 50.0%
ACAGGGCACAAGTTGTTGGT+TGG - chr5.1:20934243-20934262 MS.gene036278:intron 50.0%
ATGGGACCCACGTAATATGG+TGG - chr5.1:20936642-20936661 MS.gene036278:CDS 50.0%
CACCTGCGAAAACCCATCAA+CGG + chr5.1:20933819-20933838 None:intergenic 50.0%
GATGAGTGAGAGCAAGCTGA+GGG - chr5.1:20934624-20934643 MS.gene036278:intron 50.0%
GATGGAGACTGGATGCTTGT+AGG - chr5.1:20934691-20934710 MS.gene036278:intron 50.0%
GGGTTGAGTCTCAGGTTTAC+TGG - chr5.1:20935393-20935412 MS.gene036278:intron 50.0%
GTAGTTCCTCTAGCTGCACA+AGG + chr5.1:20934036-20934055 None:intergenic 50.0%
GTGGTTTCGGGGAATAAGAG+AGG - chr5.1:20933782-20933801 MS.gene036278:intron 50.0%
TCAATCACCCGAGAGGGAAA+TGG - chr5.1:20933679-20933698 MS.gene036278:intron 50.0%
TCCAAGGGGGACATACAAGT+AGG + chr5.1:20935265-20935284 None:intergenic 50.0%
TCCCACTGCACTCTTTGTGA+AGG - chr5.1:20934346-20934365 MS.gene036278:intron 50.0%
TCCGAATCCATTTCCCTCTC+GGG + chr5.1:20933689-20933708 None:intergenic 50.0%
TCCTACTTGTATGTCCCCCT+TGG - chr5.1:20935261-20935280 MS.gene036278:intron 50.0%
TGATGAGTGAGAGCAAGCTG+AGG - chr5.1:20934623-20934642 MS.gene036278:intron 50.0%
TGGAGACTGGATGCTTGTAG+GGG - chr5.1:20934693-20934712 MS.gene036278:intron 50.0%
TGGATGGTGCTCCCTATCTA+AGG - chr5.1:20934375-20934394 MS.gene036278:intron 50.0%
TGGGACCCACGTAATATGGT+GGG - chr5.1:20936643-20936662 MS.gene036278:CDS 50.0%
TGGTCTTTCGGGACTTCCAA+GGG + chr5.1:20935280-20935299 None:intergenic 50.0%
TGGTGCTCCCTATCTAAGGA+AGG - chr5.1:20934379-20934398 MS.gene036278:intron 50.0%
TGTGACAGGGCACAAGTTGT+TGG - chr5.1:20934239-20934258 MS.gene036278:intron 50.0%
TGTGCAGCTAGAGGAACTAC+TGG - chr5.1:20934036-20934055 MS.gene036278:intron 50.0%
! AAGCTGAGGGACCTTTTGCA+TGG - chr5.1:20934637-20934656 MS.gene036278:intron 50.0%
! ACCCGAGAGGGAAATGGATT+CGG - chr5.1:20933685-20933704 MS.gene036278:intron 50.0%
! ATGAAGGGTTCTGACGCCAT+TGG - chr5.1:20936928-20936947 MS.gene036278:CDS 50.0%
! GAAGGCTACTGAGTTGAGGT+TGG - chr5.1:20933643-20933662 MS.gene036278:intron 50.0%
! GACCTTCACAAAGAGTGCAG+TGG + chr5.1:20934351-20934370 None:intergenic 50.0%
! TGAAGGGTTCTGACGCCATT+GGG - chr5.1:20936929-20936948 MS.gene036278:CDS 50.0%
! TTCTATCGCTGGTTGTGCAC+CGG - chr5.1:20934080-20934099 MS.gene036278:intron 50.0%
! TTGGTCTTTCGGGACTTCCA+AGG + chr5.1:20935281-20935300 None:intergenic 50.0%
!!! TACCGTTGATGGGTTTTCGC+AGG - chr5.1:20933814-20933833 MS.gene036278:intron 50.0%
ATGCTATCGCCTAGACCTGG+TGG - chr5.1:20933958-20933977 MS.gene036278:intron 55.0%
CCTCTCGGGTGATTGAGATC+CGG + chr5.1:20933675-20933694 None:intergenic 55.0%
CGGATCTCAATCACCCGAGA+GGG - chr5.1:20933673-20933692 MS.gene036278:intron 55.0%
CTCTCGGGTGATTGAGATCC+GGG + chr5.1:20933674-20933693 None:intergenic 55.0%
GAGTTGAGGTTGGGTCTTCC+CGG - chr5.1:20933653-20933672 MS.gene036278:intron 55.0%
GCTTGTAGGGGACGTACCAT+GGG - chr5.1:20934705-20934724 MS.gene036278:intron 55.0%
GGTCTTTCGGGACTTCCAAG+GGG + chr5.1:20935279-20935298 None:intergenic 55.0%
GTCTTTCGGGACTTCCAAGG+GGG + chr5.1:20935278-20935297 None:intergenic 55.0%
GTGATGCTATCGCCTAGACC+TGG - chr5.1:20933955-20933974 MS.gene036278:intron 55.0%
TGCTTGTAGGGGACGTACCA+TGG - chr5.1:20934704-20934723 MS.gene036278:intron 55.0%
TGTGTAATGGCAGGCCAGTG+TGG - chr5.1:20934574-20934593 MS.gene036278:intron 55.0%
! ACAAAGAGTGCAGTGGGACC+TGG + chr5.1:20934344-20934363 None:intergenic 55.0%
! GAAAGGCCTTGTGCAGCTAG+AGG - chr5.1:20934027-20934046 MS.gene036278:intron 55.0%
CCGGATCTCAATCACCCGAG+AGG - chr5.1:20933672-20933691 MS.gene036278:intron 60.0%
GAGCTCCATGGGAACCACAC+TGG + chr5.1:20934591-20934610 None:intergenic 60.0%
GCGCAAACTGTCGTCGACGA+TGG - chr5.1:20933523-20933542 MS.gene036278:CDS 60.0%
GGGGTGCGGGGAATTCAGTA+GGG - chr5.1:20936241-20936260 MS.gene036278:intron 60.0%
GGGTGCGGGGAATTCAGTAG+GGG - chr5.1:20936242-20936261 MS.gene036278:intron 60.0%
TGGGGTGCGGGGAATTCAGT+AGG - chr5.1:20936240-20936259 MS.gene036278:intron 60.0%
TGTGGTTCCCATGGAGCTCC+AGG - chr5.1:20934592-20934611 MS.gene036278:intron 60.0%
!! GCAGGTGCTGCTTCTATCGC+TGG - chr5.1:20934069-20934088 MS.gene036278:intron 60.0%
CGGTGGCTACGGAGGAGGAA+GGG - chr5.1:20933498-20933517 MS.gene036278:CDS 65.0%
GCAGGCCAGTGTGGTTCCCA+TGG - chr5.1:20934583-20934602 MS.gene036278:intron 65.0%
GCCTAGACCTGGTGGAGCTC+AGG - chr5.1:20933966-20933985 MS.gene036278:intron 65.0%
GCCTGAGCTCCACCAGGTCT+AGG + chr5.1:20933970-20933989 None:intergenic 65.0%
TGGCTACGGAGGAGGAAGGG+CGG - chr5.1:20933501-20933520 MS.gene036278:CDS 65.0%
GCGGTGGCTACGGAGGAGGA+AGG - chr5.1:20933497-20933516 MS.gene036278:CDS 70.0%
GTCTCCGACGGCGGTGGCTA+CGG - chr5.1:20933487-20933506 MS.gene036278:CDS 70.0%
GTGCTCGCCTGAGCTCCACC+AGG + chr5.1:20933976-20933995 None:intergenic 70.0%
TCCTCCGTAGCCACCGCCGT+CGG + chr5.1:20933494-20933513 None:intergenic 70.0%
GACGGCGGTGGCTACGGAGG+AGG - chr5.1:20933493-20933512 MS.gene036278:CDS 75.0%
TCCGACGGCGGTGGCTACGG+AGG - chr5.1:20933490-20933509 MS.gene036278:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 20933485 20936955 20933485 ID=MS.gene036278
chr5.1 mRNA 20933485 20936955 20933485 ID=MS.gene036278.t1;Parent=MS.gene036278
chr5.1 exon 20936605 20936955 20936605 ID=MS.gene036278.t1.exon1;Parent=MS.gene036278.t1
chr5.1 CDS 20936605 20936955 20936605 ID=cds.MS.gene036278.t1;Parent=MS.gene036278.t1
chr5.1 exon 20936331 20936515 20936331 ID=MS.gene036278.t1.exon2;Parent=MS.gene036278.t1
chr5.1 CDS 20936331 20936515 20936331 ID=cds.MS.gene036278.t1;Parent=MS.gene036278.t1
chr5.1 exon 20935964 20936193 20935964 ID=MS.gene036278.t1.exon3;Parent=MS.gene036278.t1
chr5.1 CDS 20935964 20936193 20935964 ID=cds.MS.gene036278.t1;Parent=MS.gene036278.t1
chr5.1 exon 20935712 20935853 20935712 ID=MS.gene036278.t1.exon4;Parent=MS.gene036278.t1
chr5.1 CDS 20935712 20935853 20935712 ID=cds.MS.gene036278.t1;Parent=MS.gene036278.t1
chr5.1 exon 20933485 20933546 20933485 ID=MS.gene036278.t1.exon5;Parent=MS.gene036278.t1
chr5.1 CDS 20933485 20933546 20933485 ID=cds.MS.gene036278.t1;Parent=MS.gene036278.t1
Gene Sequence

>MS.gene036278

ATGTCTCCGACGGCGGTGGCTACGGAGGAGGAAGGGCGGCGCAAACTGTCGTCGACGATGGAACGGAATTACTTGGGATTGTCTGATTGTTCATCGGTGGATAGTTGTGATTCAACTCTCCCAAGTTTGTGTGATGAGAAAAAAGTGAACTTGAATTTGAAGGCTACTGAGTTGAGGTTGGGTCTTCCCGGATCTCAATCACCCGAGAGGGAAATGGATTCGGATTTTTACGTAACAAAGCTTGATGAGAAACCATTGTTCCCTTTACTTCCTGCAAAAGATGGTTTGCAGAAGAATGTGGTTTCGGGGAATAAGAGAGGATTTGCTGATACCGTTGATGGGTTTTCGCAGGTGATTAGTTTGATGAAGTTGGTTTATGCGGTGAGAAGTGCATGTTTTGTTTTAGTGGTTTAATGGTGTTTACAATATTTGTTATGCAGGGTAAGTTTAATGCTAATTCAGGGATTAACGTGATGCTATCGCCTAGACCTGGTGGAGCTCAGGCGAGCACAGTGAAAGAAATGCCGAGTAAGGTTTTGCAGGAAAGGCCTTGTGCAGCTAGAGGAACTACTGGTCATAATCAGGCAGGTGCTGCTTCTATCGCTGGTTGTGCACCGGCATCTAAGTAAGTAAAATCTATCAACTCAACTACTCAAGGATCTTAATTTACACAAGACTAGTAGCTGAACAAACATGTATGATTTGGTTTTTTGTGTTTCTAGATATCCTAATCCTGATATGGTAAATTTTCATATGTGACAGGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCGATGGCCAATGCTTCCAAGAACAACAATGATGAAGTGGATGGAAAACCAGGTCCCACTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTAAGGAAGGTAGATCTAAGAACTTATACAACATATCAGCAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACTCTAGGTGAGTTGTTATTTTAATTTATTTTAACAATAAAATTTGTTTTTGCTGATGATGAAGTTGGTTGTTGCTTTATTTTTGTTCTGAAATCTTTGGCGATTGTGTAATGGCAGGCCAGTGTGGTTCCCATGGAGCTCCAGGAAAAGAAATGATGAGTGAGAGCAAGCTGAGGGACCTTTTGCATGGTTCAGAATATGTTCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGACGTACCATGGGAGTAAGATGTTCTTTAAATTCTGGTTTTTGCATCTTTGTTTTCTCGCTATATTTTTTCACGTAATAGTAGTCTCTATTTTGCTTCTGAGACAATGGAGTAAATGCTTTTGCAAATATATAGTCTAAAAAAGTAAGTAATCATAATGATCAGCAATAATTGATTGATTTTGTAATTAATAAGTAATTGTAAGTCATAATGATCATTTGAGAGTCCAGAATTAGACTTGTACTCCTTCCGTTTATAAATGAGTGTCGTTTAAGGTTTCCGCATACAAATTAAGAAATACAAAAAGGTTGTCAAAAGACATAACCCTTTTCCTAAACTACCCCTAATAACTATTGGTGTGTTTCCTACAAAAGTAGAATATATTACCTTCGAAGTAGTGTACACAACATTCATTTGAGGGCATAATTGGAAAAGTTTCCATTGAAAAGTGAACATACATTCATTTTGAAACAATTTTTTTTTCTCTAAAGAGACACTCATTTTGAAACGAAGGGATTAGAGATTGTCGTAATGTATATGGAGCGAGTCCTACTTGTATGTCCCCCTTGGAAGTCCCGAAAGACCAATTGATCCATATTTCTGGGTTGACTTATTTTCTTCTACTTTCTACTTAAATCAATTTGCAAATTGAGACTATATCTTATATACAAATATTGTTGGGTTGAGTCTCAGGTTTACTGGTTAATCCAATTTCCATGTATACTCATAGGCACTCACATTTGTGGTTTAGAAGATTAATTAATTGCTTGTGTCTGTTCTTTGAGTGCTAGGTCTAGTGATCAATCATATGTTTTTTCATGCCAAACAGCGGTGGTATGATATCACTTTTATTTTTCAAATACTACCTAACATTCAAGGGTTCTTGTTTTATTAGTGATTCCTGAAATTTGCTCAACATGGGTAAGCACTAATATTACTCAATTTGATTCAAAATATTATGATAAAAGATCATTCGTCAAATTAAGAGATGGATATAGTGAATCGAGAAAGTTAATACTGCAAATAATTGAACTTGTAATTTTTAATCGAAAATTAGGGGGCTCATGTCATGGCTACCGAGAACAACTAATGGGCGCATAACATATTACAGATGCGAATTATAATTTTGACAGATGTGATACCAAGTATAATGGATATTGCATGCAATTGCTCATCTAAGTAACTTGCCACTTGCTTGAAAAAATATCAAGAAAATTTTCCCTTTTTAGAAAGCAAAGTTATTTTGAAATCACAGTTCAGCATGCACTATCCTTAGGTTTCTTCCTGTCTTTTCAATCCTGCTACAGAATTTTCTGGCTAATTCAATATATTTAAAAGTGTGAATCAATTCAATGTATTGAAGTGTATTTTGATTTTTGAATGTTGTTATTTTTGTCTTTTTTGCTGCATAATGTTGCTGGGATGTACTAAACTAATGCATTTGAGTTGGGACAAAAATGGAATATTGTAGATAATTATCTGCTTCATAACACATTGGCTATATGGCATTGGCAAATTAGTATGAATGGGGTGCGGGGAATTCAGTAGGGGTACTTGATGAAAATGTGAGGAGGGAATAGTTAGAATATGGGGATTTGGCATGGAGGGTGCATGTGCATGCCCCTCTAAGAAACTTCAGCTCATTTTTATTAAAAATAAAAATAAAAAATTCTTGTCCTTTGTTTCTCCCATCTTAAATGGATTTACAGTGTTTTTGTGTTCTGTAATGTGTCTATCTATATTTTTTTTGAAGAAATTCAGGTTCTAATCGAAGTGTCGTGTATGCTATGACTTGTTCATTAGTATCCAGACTGAAGAATTTGATCATGACCAGGATTGTGTTGCTGAATATGATTATTAATAATGCTAGCAACACACTTTTCAACACACTCTTTGATTAAAATTCGCATGCGGCCAACCAAAATAATATGGGACCCACGTAATATGGTGGGACAAGTGTGAATTTTACCCAATCAAAGAGAGTATGTTGAAAAGTGTGAGTGTGTTGCTAGCATAGTAGCACTCCTCTAGTATTATAGTTCTGTAATTTACGGGCTTGTCTATTTAGGCATTAAGTGTTGATGCAAATTCTAGTATCTTAAAACCAAGAAAATGGACTGAATGAATGACATAAGGTTTGCATCCCACTCACTAAATTGCAATTCCTTATGCATGTGCAGGATGTTCATTGATACTTGCAGAAGGCTGAAAATAATGAAGGGTTCTGACGCCATTGGGTTAG
Protein sequence

>MS.gene036278.t1

MSPTAVATEEEGRRKLSSTMERNYLGLSDCSSVDSCDSTLPSLCDEKKVNLNLKATELRLGLPGSQSPEREMDSDFYVTKLDEKPLFPLLPAKDGLQKNVVSGNKRGFADTVDGFSQGKFNANSGINVMLSPRPGGAQASTVKEMPSKVLQERPCAARGTTGHNQAGAASIAGCAPASKAQVVGWPPIRSFRKNSMANASKNNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRTYTTYQQLSSALEKMFSCFTLGQCGSHGAPGKEMMSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLKIMKGSDAIGL