AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036708

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036708.t1 MTR_4g115540 94.884 430 21 1 1 430 200 628 0.0 855
MS.gene036708.t1 MTR_4g115540 94.659 337 17 1 1 337 200 535 0.0 670
MS.gene036708.t1 MTR_4g115530 71.173 392 111 1 35 426 1 390 0.0 602
MS.gene036708.t1 MTR_4g115530 73.810 336 88 0 91 426 1 336 0.0 539
MS.gene036708.t1 MTR_4g115460 60.804 398 149 4 31 426 70 462 0.0 514
MS.gene036708.t1 MTR_7g103270 52.195 410 185 4 21 430 4 402 6.81e-155 444
MS.gene036708.t1 MTR_7g103260 54.822 394 165 6 38 430 20 401 1.37e-154 443
MS.gene036708.t1 MTR_1g061760 52.334 407 180 7 27 430 93 488 2.05e-146 426
MS.gene036708.t1 MTR_3g097310 50.971 412 192 5 22 430 91 495 7.11e-142 414
MS.gene036708.t1 MTR_3g081240 51.282 390 181 3 37 423 60 443 3.89e-139 405
MS.gene036708.t1 MTR_3g080690 51.157 389 181 4 37 423 60 441 8.35e-138 402
MS.gene036708.t1 MTR_3g106690 53.179 346 155 3 84 427 52 392 4.87e-134 390
MS.gene036708.t1 MTR_7g103150 41.795 390 197 10 41 422 114 481 4.73e-96 297
MS.gene036708.t1 MTR_1g006600 41.026 390 200 7 41 422 216 583 1.16e-93 294
MS.gene036708.t1 MTR_3g110198 38.515 431 231 10 14 422 172 590 6.42e-93 292
MS.gene036708.t1 MTR_1g090733 40.730 356 184 6 77 423 208 545 2.90e-92 289
MS.gene036708.t1 MTR_3g110200 42.165 351 188 9 77 422 247 587 3.74e-88 280
MS.gene036708.t1 MTR_8g102840 38.010 392 212 8 40 422 237 606 7.83e-88 279
MS.gene036708.t1 MTR_4g100730 40.306 392 204 9 43 423 161 533 8.58e-88 277
MS.gene036708.t1 MTR_5g031480 35.227 352 206 7 75 420 74 409 5.00e-76 243
MS.gene036708.t1 MTR_5g049790 35.632 348 194 8 75 420 110 429 2.65e-72 234
MS.gene036708.t1 MTR_7g085840 36.628 344 183 11 91 421 1 322 9.35e-60 198
MS.gene036708.t1 MTR_8g102840 36.184 304 163 8 40 334 237 518 4.53e-59 202
MS.gene036708.t1 MTR_5g031480 32.967 273 161 7 75 341 74 330 2.79e-46 162
MS.gene036708.t1 MTR_5g031480 32.721 272 161 7 75 340 74 329 1.47e-45 161
MS.gene036708.t1 MTR_5g049790 32.889 225 133 5 75 297 110 318 4.53e-36 135
MS.gene036708.t1 MTR_5g049790 33.486 218 128 4 75 290 127 329 5.03e-36 135
MS.gene036708.t1 MTR_2g084245 25.956 366 212 16 89 417 83 426 1.01e-25 108
MS.gene036708.t1 MTR_8g096140 22.899 345 231 8 107 417 41 384 1.35e-23 102
MS.gene036708.t1 MTR_8g096160 22.899 345 231 8 107 417 41 384 4.56e-23 100
MS.gene036708.t1 MTR_4g057500 26.159 302 189 9 140 417 153 444 2.02e-22 99.4
MS.gene036708.t1 MTR_3g037720 28.000 300 182 11 136 417 187 470 4.55e-22 98.6
MS.gene036708.t1 MTR_6g027310 27.687 307 181 11 132 417 179 465 1.58e-19 91.3
MS.gene036708.t1 MTR_1g097090 30.035 283 171 10 142 401 145 423 2.56e-18 87.4
MS.gene036708.t1 MTR_1g097090 30.035 283 171 10 142 401 145 423 2.78e-18 87.0
MS.gene036708.t1 MTR_4g077920 25.090 279 176 7 170 426 144 411 3.29e-18 86.7
MS.gene036708.t1 MTR_4g077920 23.839 323 202 9 126 426 169 469 5.81e-18 86.3
MS.gene036708.t1 MTR_4g077920 24.671 304 185 9 126 407 169 450 1.29e-17 85.1
MS.gene036708.t1 MTR_7g087100 27.852 298 184 11 136 417 188 470 6.78e-17 83.2
MS.gene036708.t1 MTR_4g084200 23.875 289 184 12 136 403 160 433 1.92e-15 78.6
MS.gene036708.t1 MTR_1g029350 24.432 352 214 12 95 414 74 405 2.96e-14 74.7
MS.gene036708.t1 MTR_8g080490 26.087 322 197 14 117 417 97 398 3.14e-14 74.7
MS.gene036708.t1 MTR_3g085480 27.236 246 148 8 191 417 167 400 8.36e-14 73.2
MS.gene036708.t1 MTR_4g084200 23.929 280 177 12 136 394 160 424 1.66e-13 72.4
MS.gene036708.t1 MTR_4g084200 24.296 284 178 13 136 398 160 427 2.18e-13 72.0
MS.gene036708.t1 MTR_5g081290 31.818 132 66 4 120 250 28 136 5.75e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036708.t1 AT3G42180 63.980 397 139 2 33 426 73 468 0.0 532
MS.gene036708.t1 AT5G20260 60.465 387 146 4 41 426 85 465 0.0 523
MS.gene036708.t1 AT5G33290 61.168 394 138 2 36 426 117 498 0.0 518
MS.gene036708.t1 AT3G42180 67.257 339 108 1 91 426 1 339 4.06e-176 496
MS.gene036708.t1 AT5G11130 56.599 394 164 3 40 430 91 480 1.80e-171 489
MS.gene036708.t1 AT5G20260 61.988 342 125 3 86 426 23 360 3.83e-167 474
MS.gene036708.t1 AT5G20260 62.018 337 123 3 91 426 1 333 2.09e-164 466
MS.gene036708.t1 AT5G11130 58.235 340 138 2 91 430 1 336 2.92e-157 447
MS.gene036708.t1 AT5G03795 51.899 395 179 4 32 426 132 515 1.86e-147 429
MS.gene036708.t1 AT3G07620 49.614 389 190 3 40 427 76 459 2.04e-139 407
MS.gene036708.t1 AT5G25310 48.529 408 190 7 27 426 84 479 3.42e-135 397
MS.gene036708.t1 AT4G16745 40.050 402 219 7 32 423 140 529 4.42e-98 304
MS.gene036708.t1 AT5G19670 40.049 407 212 10 25 422 221 604 3.14e-96 301
MS.gene036708.t1 AT5G19670 40.049 407 212 10 25 422 221 604 3.14e-96 301
MS.gene036708.t1 AT4G16745 37.857 420 226 11 32 429 140 546 1.04e-89 283
MS.gene036708.t1 AT4G32790 41.880 351 190 8 77 422 249 590 1.36e-88 281
MS.gene036708.t1 AT4G32790 41.880 351 190 8 77 422 249 590 1.36e-88 281
MS.gene036708.t1 AT4G32790 41.880 351 190 8 77 422 249 590 1.36e-88 281
MS.gene036708.t1 AT5G25820 41.689 367 187 11 68 422 298 649 3.78e-88 281
MS.gene036708.t1 AT5G11610 38.010 392 211 10 40 422 174 542 4.49e-84 268
MS.gene036708.t1 AT5G37000 38.483 356 196 6 77 423 208 549 1.46e-82 264
MS.gene036708.t1 AT4G38040 36.390 349 202 5 77 420 86 419 5.69e-76 243
MS.gene036708.t1 AT4G38040 34.769 325 192 5 77 396 86 395 1.13e-64 213
MS.gene036708.t1 AT5G11610 35.017 297 164 8 40 329 174 448 1.25e-50 177
MS.gene036708.t1 AT1G27440 25.574 305 201 7 131 417 84 380 4.90e-27 112
MS.gene036708.t1 AT5G61840 25.568 352 222 10 92 417 46 383 9.10e-27 111
MS.gene036708.t1 AT5G11610 33.918 171 96 5 40 208 174 329 2.28e-25 106
MS.gene036708.t1 AT2G28110 23.398 359 230 11 90 417 89 433 1.10e-23 103
MS.gene036708.t1 AT1G67410 28.333 300 177 10 140 417 123 406 2.43e-22 99.0
MS.gene036708.t1 AT5G22940 25.078 319 204 12 131 425 147 454 3.58e-21 95.9
MS.gene036708.t1 AT5G22940 25.078 319 204 12 131 425 176 483 3.70e-21 95.9
MS.gene036708.t1 AT1G74680 28.041 296 193 9 133 417 146 432 4.88e-19 89.4
MS.gene036708.t1 AT5G16890 24.654 361 214 13 99 426 140 475 1.02e-18 88.6
MS.gene036708.t1 AT1G21480 24.866 374 225 14 76 417 74 423 1.12e-16 82.4
MS.gene036708.t1 AT2G35100 22.867 293 197 9 126 403 117 395 1.39e-16 82.0
MS.gene036708.t1 AT3G45400 28.669 293 178 11 141 417 159 436 2.67e-16 81.3
MS.gene036708.t1 AT3G03650 24.925 333 212 10 109 418 158 475 7.51e-16 80.1
MS.gene036708.t1 AT1G21480 25.846 325 186 14 76 369 74 374 1.39e-15 78.6
MS.gene036708.t1 AT5G44930 26.962 293 177 13 140 418 130 399 4.67e-14 74.3
MS.gene036708.t1 AT5G44930 26.962 293 177 13 140 418 130 399 4.67e-14 74.3
MS.gene036708.t1 AT1G34270 28.571 287 173 12 141 401 144 424 6.79e-13 70.9
MS.gene036708.t1 AT5G44930 26.866 268 165 11 140 393 130 380 1.22e-12 69.3

Find 82 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTCTACTGTTTGCTTTA+TGG 0.100371 8.2:-13153768 None:intergenic
GGATTTGCATCTGAGATTTC+TGG 0.154159 8.2:-13155531 None:intergenic
TAGCATAAAGAGCCCCTTTA+AGG 0.188086 8.2:+13154538 MS.gene036708:CDS
CTGAAGGGTTCCAGCCTAAA+AGG 0.211097 8.2:+13155601 MS.gene036708:CDS
ACATGATACTTCATTCAATT+TGG 0.212744 8.2:+13156135 MS.gene036708:CDS
TCAAAACTATACACAATTAA+TGG 0.213424 8.2:+13155815 MS.gene036708:CDS
TTGCTGATAAGTATCCTTAT+TGG 0.220100 8.2:+13154705 MS.gene036708:CDS
TTAATTGCTTCCACAATTCT+TGG 0.224629 8.2:-13155885 None:intergenic
ACTAGGGTGCTTAGCCTTAA+AGG 0.225671 8.2:-13154552 None:intergenic
ACCACATTTGCAACACTAAA+AGG 0.233973 8.2:-13154596 None:intergenic
AAAGTTAGGCCCACCAAATC+TGG 0.280032 8.2:+13155659 MS.gene036708:CDS
TAAGCCAATTATGTCCAAAA+AGG 0.281177 8.2:+13154631 MS.gene036708:CDS
TTCTCCTCTCTTGTCATGAC+TGG 0.282575 8.2:+13154753 MS.gene036708:CDS
TGGTGAAGAGATTGAAGATA+TGG 0.283644 8.2:+13154423 MS.gene036708:CDS
TAAAGCAAACAGTAGAATTA+AGG 0.322968 8.2:+13153771 MS.gene036708:CDS
GCTAATGTGGTTCTGTTTGA+TGG 0.329668 8.2:-13155690 None:intergenic
CCATTACTTCTATTCCAATA+AGG 0.353414 8.2:-13154719 None:intergenic
GAAAATTGTTACTAAATCAT+TGG 0.357368 8.2:+13155745 MS.gene036708:CDS
GGATAGAGTTGAAGAAAGTT+TGG 0.364095 8.2:+13153910 MS.gene036708:CDS
CCAACTGGTAAGTACACTTC+AGG 0.370355 8.2:-13155636 None:intergenic
CAAAACTATACACAATTAAT+GGG 0.375555 8.2:+13155816 MS.gene036708:CDS
GATGGGCTTTGGCCCAGATT+TGG 0.381038 8.2:-13155672 None:intergenic
TGGTTCTGTTTGATGGGCTT+TGG 0.388867 8.2:-13155683 None:intergenic
TTCGAGAAGCAATTCTTTCA+AGG 0.389150 8.2:+13153951 MS.gene036708:CDS
CTAGGGTGCTTAGCCTTAAA+GGG 0.394806 8.2:-13154551 None:intergenic
CTTTCAATGATGTGTTGAAT+TGG 0.396648 8.2:+13155952 MS.gene036708:CDS
GGCTTTGGCCCAGATTTGGT+GGG 0.396783 8.2:-13155668 None:intergenic
TTCTGTAGATGGACCCTCTT+GGG 0.399902 8.2:-13154012 None:intergenic
AATGGTCCATCATGTACTAT+TGG 0.409324 8.2:-13154467 None:intergenic
CTTAACTGATGAAAAGCATA+TGG 0.424295 8.2:-13154037 None:intergenic
GGGCTTTGGCCCAGATTTGG+TGG 0.426206 8.2:-13155669 None:intergenic
ATTGCATATATGTTGTTCAA+TGG 0.428434 8.2:-13154485 None:intergenic
AGCATATGGATTTCTGTAGA+TGG 0.431080 8.2:-13154023 None:intergenic
CATGACAAGAGAGGAGAAAA+TGG 0.431578 8.2:-13154748 None:intergenic
TACTTACCAGTTGGAAAGTT+AGG 0.456933 8.2:+13155645 MS.gene036708:CDS
CTAATGTGGTTCTGTTTGAT+GGG 0.466560 8.2:-13155689 None:intergenic
TTTCTGTAGATGGACCCTCT+TGG 0.471285 8.2:-13154013 None:intergenic
ATCATGTGCATCACATCAAA+AGG 0.472300 8.2:-13156119 None:intergenic
GCAGAAAATTATGACTAGCT+TGG 0.478762 8.2:+13153889 MS.gene036708:intron
GGTGGGCCTAACTTTCCAAC+TGG 0.479077 8.2:-13155651 None:intergenic
AACAACATATATGCAATTGA+AGG 0.484931 8.2:+13154491 MS.gene036708:CDS
TGCAATGCAAACACTTCTGA+AGG 0.485857 8.2:+13155585 MS.gene036708:CDS
GGAATTACAGTACTACTTCA+AGG 0.486167 8.2:+13153972 MS.gene036708:CDS
TCTCCTCTCTTGTCATGACT+GGG 0.487831 8.2:+13154754 MS.gene036708:CDS
ATCACATCAAAAGGCTTAGC+AGG 0.501383 8.2:-13156110 None:intergenic
TGAAGGGTTCCAGCCTAAAA+GGG 0.509729 8.2:+13155602 MS.gene036708:CDS
ATGGGCCCCACCAGAAAAGA+AGG 0.516521 8.2:-13155712 None:intergenic
CAACTGGTAAGTACACTTCA+GGG 0.516975 8.2:-13155635 None:intergenic
GGTGAAGAGATTGAAGATAT+GGG 0.523274 8.2:+13154424 MS.gene036708:CDS
AAGATATGGGTATACAAAGA+AGG 0.523825 8.2:+13154437 MS.gene036708:CDS
CTAGCCACTTCATATCCACT+TGG 0.551352 8.2:-13155861 None:intergenic
CCTTATTGGAATAGAAGTAA+TGG 0.555785 8.2:+13154719 MS.gene036708:CDS
ATTGTTACTAAATCATTGGA+AGG 0.556809 8.2:+13155749 MS.gene036708:CDS
ATTGTGGAAGCAATTAATGC+TGG 0.559680 8.2:+13155891 MS.gene036708:CDS
GTTCATGAGTATCTTCCAAA+GGG 0.560213 8.2:+13155792 MS.gene036708:CDS
AAGTTAGGCCCACCAAATCT+GGG 0.562454 8.2:+13155660 MS.gene036708:CDS
AGTTCATGAGTATCTTCCAA+AGG 0.571921 8.2:+13155791 MS.gene036708:CDS
AATCAGGAGCCACATGGAGA+TGG 0.574643 8.2:+13154403 MS.gene036708:intron
CCTGAAGTGTACTTACCAGT+TGG 0.580840 8.2:+13155636 MS.gene036708:CDS
CAACACATCATTGAAAGGCA+AGG 0.592964 8.2:-13155946 None:intergenic
ACCAGAAAAGAAGGCTAATG+TGG 0.593736 8.2:-13155703 None:intergenic
AAGAATTGCTTCTCGAATCG+AGG 0.594245 8.2:-13153945 None:intergenic
CCGTGACAGACTTCATAGAA+TGG 0.594603 8.2:+13154661 MS.gene036708:CDS
CAATTCAACACATCATTGAA+AGG 0.595885 8.2:-13155951 None:intergenic
CAGACTTCATAGAATGGTGG+AGG 0.601253 8.2:+13154667 MS.gene036708:CDS
AAAATATGTGTGCCTCACTA+GGG 0.603230 8.2:-13154568 None:intergenic
AGTGGCTAGTCCAAGAATTG+TGG 0.603331 8.2:+13155875 MS.gene036708:CDS
GAGCAACCAATAGTACATGA+TGG 0.611429 8.2:+13154461 MS.gene036708:CDS
TAATTCTGAGAAATAATCAC+AGG 0.625097 8.2:-13155921 None:intergenic
ATCTCTTCACCATCTCCATG+TGG 0.632190 8.2:-13154412 None:intergenic
TATGAAAATCAGGAGCCACA+TGG 0.634197 8.2:+13154397 MS.gene036708:intron
CCATTCTATGAAGTCTGTCA+CGG 0.635986 8.2:-13154661 None:intergenic
GCAATGCAAACACTTCTGAA+GGG 0.639377 8.2:+13155586 MS.gene036708:CDS
TAAGGCTAAGCACCCTAGTG+AGG 0.639574 8.2:+13154556 MS.gene036708:CDS
CATTTGCAACACTAAAAGGA+AGG 0.639783 8.2:-13154592 None:intergenic
TAGGGTGCTTAGCCTTAAAG+GGG 0.661969 8.2:-13154550 None:intergenic
TTGTGGAAGCAATTAATGCT+GGG 0.670500 8.2:+13155892 MS.gene036708:CDS
TTATAAGTCAGAAACTGATG+AGG 0.671606 8.2:-13153724 None:intergenic
GTGTCCAAGTGGATATGAAG+TGG 0.679823 8.2:+13155857 MS.gene036708:CDS
TGACAGACTTCATAGAATGG+TGG 0.684701 8.2:+13154664 MS.gene036708:CDS
TTACCCAGTCATGACAAGAG+AGG 0.688491 8.2:-13154757 None:intergenic
ATTACAGTACTACTTCAAGG+AGG 0.793495 8.2:+13153975 MS.gene036708:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGCAAAATAAAATAAAAAAT+AGG - chr8.2:13155236-13155255 None:intergenic 10.0%
!! ATAATAATAATTGGTTATTA+AGG - chr8.2:13154334-13154353 None:intergenic 10.0%
!! ATTCTAATGATAATAATAAT+TGG - chr8.2:13154343-13154362 None:intergenic 10.0%
!! GCAAAATAAAATAAAAAATA+GGG - chr8.2:13155235-13155254 None:intergenic 10.0%
!! AAAAAAACAATACTAATTAG+TGG + chr8.2:13154944-13154963 MS.gene036708:intron 15.0%
!! ATGAAATAGAAACTTTAATT+TGG - chr8.2:13153860-13153879 None:intergenic 15.0%
!!! AAAGCATTTTATTTAAACTT+TGG - chr8.2:13155488-13155507 None:intergenic 15.0%
!!! CATAATTTTAGAAAAAAACA+AGG - chr8.2:13154381-13154400 None:intergenic 15.0%
!!! GTTTTTCTAAAAATACATTA+TGG - chr8.2:13155280-13155299 None:intergenic 15.0%
!!! TTTCTAAAATTATGAAAATC+AGG + chr8.2:13154387-13154406 MS.gene036708:intron 15.0%
!! CAAAACTATACACAATTAAT+GGG + chr8.2:13155816-13155835 MS.gene036708:CDS 20.0%
!! GAAAATTGTTACTAAATCAT+TGG + chr8.2:13155745-13155764 MS.gene036708:CDS 20.0%
!! TCAAAACTATACACAATTAA+TGG + chr8.2:13155815-13155834 MS.gene036708:CDS 20.0%
!!! AAAAGCATTTTGTTATGAAT+AGG + chr8.2:13156087-13156106 MS.gene036708:CDS 20.0%
!!! AATGTATTTTTAGAAAAACC+TGG + chr8.2:13155281-13155300 MS.gene036708:intron 20.0%
!!! ATTATTGATTGTAGTGAATT+TGG + chr8.2:13155194-13155213 MS.gene036708:intron 20.0%
!!! GATTTAGTAACAATTTTCTA+AGG - chr8.2:13155743-13155762 None:intergenic 20.0%
!!! TATTTTCAAAATGTACATGA+TGG - chr8.2:13154907-13154926 None:intergenic 20.0%
!!! TTATTAAGGTTTTAAATTGC+AGG - chr8.2:13154320-13154339 None:intergenic 20.0%
!!! TTTACTTTACTTGATAATTC+AGG + chr8.2:13155506-13155525 MS.gene036708:intron 20.0%
! AACAACATATATGCAATTGA+AGG + chr8.2:13154491-13154510 MS.gene036708:CDS 25.0%
! ACATGATACTTCATTCAATT+TGG + chr8.2:13156135-13156154 MS.gene036708:CDS 25.0%
! ATTGCATATATGTTGTTCAA+TGG - chr8.2:13154488-13154507 None:intergenic 25.0%
! ATTGTTACTAAATCATTGGA+AGG + chr8.2:13155749-13155768 MS.gene036708:CDS 25.0%
! TAAAGCAAACAGTAGAATTA+AGG + chr8.2:13153771-13153790 MS.gene036708:CDS 25.0%
! TAATTCTACTGTTTGCTTTA+TGG - chr8.2:13153771-13153790 None:intergenic 25.0%
! TATGTATTGTCGATAAAGAT+CGG + chr8.2:13155018-13155037 MS.gene036708:intron 25.0%
!! AAATCCTTTTTGGACATAAT+TGG - chr8.2:13154638-13154657 None:intergenic 25.0%
!! AGTGGAAAAAGTATATACAA+TGG + chr8.2:13154962-13154981 MS.gene036708:intron 25.0%
!! TAATTCTGAGAAATAATCAC+AGG - chr8.2:13155924-13155943 None:intergenic 25.0%
!!! CAGACAACTTTTTAAAACAT+TGG + chr8.2:13154281-13154300 MS.gene036708:intron 25.0%
AAGATATGGGTATACAAAGA+AGG + chr8.2:13154437-13154456 MS.gene036708:CDS 30.0%
CAATTCAACACATCATTGAA+AGG - chr8.2:13155954-13155973 None:intergenic 30.0%
CCATTACTTCTATTCCAATA+AGG - chr8.2:13154722-13154741 None:intergenic 30.0%
CCTTATTGGAATAGAAGTAA+TGG + chr8.2:13154719-13154738 MS.gene036708:CDS 30.0%
CTTTCAATGATGTGTTGAAT+TGG + chr8.2:13155952-13155971 MS.gene036708:CDS 30.0%
GTAGTGAATTTGGTTATGAA+GGG + chr8.2:13155204-13155223 MS.gene036708:intron 30.0%
TAAGCCAATTATGTCCAAAA+AGG + chr8.2:13154631-13154650 MS.gene036708:CDS 30.0%
TGCAGTATATATCAAAGTCT+TGG - chr8.2:13154174-13154193 None:intergenic 30.0%
TGTAGTGAATTTGGTTATGA+AGG + chr8.2:13155203-13155222 MS.gene036708:intron 30.0%
TTAATTGCTTCCACAATTCT+TGG - chr8.2:13155888-13155907 None:intergenic 30.0%
TTATAAGTCAGAAACTGATG+AGG - chr8.2:13153727-13153746 None:intergenic 30.0%
TTGCTGATAAGTATCCTTAT+TGG + chr8.2:13154705-13154724 MS.gene036708:CDS 30.0%
! CTTAACTGATGAAAAGCATA+TGG - chr8.2:13154040-13154059 None:intergenic 30.0%
! GAAGTTATAATGTGAGTTGA+AGG + chr8.2:13155121-13155140 MS.gene036708:intron 30.0%
!! AAATTTTGTTTGTGTCCAAG+TGG + chr8.2:13155846-13155865 MS.gene036708:CDS 30.0%
AAAAATATGTGTGCCTCACT+AGG - chr8.2:13154572-13154591 None:intergenic 35.0%
AAAATATGTGTGCCTCACTA+GGG - chr8.2:13154571-13154590 None:intergenic 35.0%
AATGGTCCATCATGTACTAT+TGG - chr8.2:13154470-13154489 None:intergenic 35.0%
ACCACATTTGCAACACTAAA+AGG - chr8.2:13154599-13154618 None:intergenic 35.0%
AGACTAATTGAACTGCAGAA+TGG - chr8.2:13155403-13155422 None:intergenic 35.0%
AGCATATGGATTTCTGTAGA+TGG - chr8.2:13154026-13154045 None:intergenic 35.0%
AGTTCATGAGTATCTTCCAA+AGG + chr8.2:13155791-13155810 MS.gene036708:CDS 35.0%
ATCATGTGCATCACATCAAA+AGG - chr8.2:13156122-13156141 None:intergenic 35.0%
ATTACAGTACTACTTCAAGG+AGG + chr8.2:13153975-13153994 MS.gene036708:CDS 35.0%
ATTGTGGAAGCAATTAATGC+TGG + chr8.2:13155891-13155910 MS.gene036708:CDS 35.0%
CATTTGCAACACTAAAAGGA+AGG - chr8.2:13154595-13154614 None:intergenic 35.0%
GAAATATGAATCTCCAAGCA+AGG - chr8.2:13155368-13155387 None:intergenic 35.0%
GATAGAATAAATGCCTTGCT+TGG + chr8.2:13155352-13155371 MS.gene036708:intron 35.0%
GGAATTACAGTACTACTTCA+AGG + chr8.2:13153972-13153991 MS.gene036708:CDS 35.0%
GGATAGAGTTGAAGAAAGTT+TGG + chr8.2:13153910-13153929 MS.gene036708:CDS 35.0%
GGTGAAGAGATTGAAGATAT+GGG + chr8.2:13154424-13154443 MS.gene036708:CDS 35.0%
GTTCATGAGTATCTTCCAAA+GGG + chr8.2:13155792-13155811 MS.gene036708:CDS 35.0%
TACTTACCAGTTGGAAAGTT+AGG + chr8.2:13155645-13155664 MS.gene036708:CDS 35.0%
TGGTGAAGAGATTGAAGATA+TGG + chr8.2:13154423-13154442 MS.gene036708:CDS 35.0%
TTCGAGAAGCAATTCTTTCA+AGG + chr8.2:13153951-13153970 MS.gene036708:CDS 35.0%
TTGTGGAAGCAATTAATGCT+GGG + chr8.2:13155892-13155911 MS.gene036708:CDS 35.0%
! AAGGCATTTATTCTATCTGC+AGG - chr8.2:13155349-13155368 None:intergenic 35.0%
! ATCTCTACTATTTTCTCCAC+TGG - chr8.2:13155999-13156018 None:intergenic 35.0%
! CTAATGTGGTTCTGTTTGAT+GGG - chr8.2:13155692-13155711 None:intergenic 35.0%
! GAATTGGAGTGAATTTTCAG+TGG + chr8.2:13155968-13155987 MS.gene036708:CDS 35.0%
! GCAGAAAATTATGACTAGCT+TGG + chr8.2:13153889-13153908 MS.gene036708:intron 35.0%
! TATAGTTCTTTTCTGACACC+AGG - chr8.2:13155302-13155321 None:intergenic 35.0%
! TCCTTTTAGTGTTGCAAATG+TGG + chr8.2:13154595-13154614 MS.gene036708:CDS 35.0%
!! CTCTTGTGAAGTTTTTGAAG+AGG - chr8.2:13155560-13155579 None:intergenic 35.0%
!! GTGAAGTTTTTGAAGAGGTT+TGG - chr8.2:13155555-13155574 None:intergenic 35.0%
!!! ACAATTTTCTAAGGTCACCA+TGG - chr8.2:13155734-13155753 None:intergenic 35.0%
!!! CAATTTTCTAAGGTCACCAT+GGG - chr8.2:13155733-13155752 None:intergenic 35.0%
!!! TGTGTATAGTTTTGACCCTT+TGG - chr8.2:13155810-13155829 None:intergenic 35.0%
AACAAGCTGATCTAAGCCAT+TGG - chr8.2:13155155-13155174 None:intergenic 40.0%
AAGAATTGCTTCTCGAATCG+AGG - chr8.2:13153948-13153967 None:intergenic 40.0%
ACCAGAAAAGAAGGCTAATG+TGG - chr8.2:13155706-13155725 None:intergenic 40.0%
AGTCTGCAATCACAATTACG+CGG - chr8.2:13154227-13154246 None:intergenic 40.0%
ATCACATCAAAAGGCTTAGC+AGG - chr8.2:13156113-13156132 None:intergenic 40.0%
CAACACATCATTGAAAGGCA+AGG - chr8.2:13155949-13155968 None:intergenic 40.0%
CAACTGGTAAGTACACTTCA+GGG - chr8.2:13155638-13155657 None:intergenic 40.0%
CATGACAAGAGAGGAGAAAA+TGG - chr8.2:13154751-13154770 None:intergenic 40.0%
CCATTCTATGAAGTCTGTCA+CGG - chr8.2:13154664-13154683 None:intergenic 40.0%
GAGCAACCAATAGTACATGA+TGG + chr8.2:13154461-13154480 MS.gene036708:CDS 40.0%
GCAATGCAAACACTTCTGAA+GGG + chr8.2:13155586-13155605 MS.gene036708:CDS 40.0%
GTTGAAGGATCTCTATCCAA+TGG + chr8.2:13155136-13155155 MS.gene036708:intron 40.0%
TAGCATAAAGAGCCCCTTTA+AGG + chr8.2:13154538-13154557 MS.gene036708:CDS 40.0%
TATGAAAATCAGGAGCCACA+TGG + chr8.2:13154397-13154416 MS.gene036708:intron 40.0%
TGACAGACTTCATAGAATGG+TGG + chr8.2:13154664-13154683 MS.gene036708:CDS 40.0%
TGCAATGCAAACACTTCTGA+AGG + chr8.2:13155585-13155604 MS.gene036708:CDS 40.0%
! ATTTTCAGTGGAGATTCCAG+TGG + chr8.2:13155980-13155999 MS.gene036708:CDS 40.0%
! GCTAATGTGGTTCTGTTTGA+TGG - chr8.2:13155693-13155712 None:intergenic 40.0%
! GGATTTGCATCTGAGATTTC+TGG - chr8.2:13155534-13155553 None:intergenic 40.0%
! GTCACGGTTGAAATCCTTTT+TGG - chr8.2:13154648-13154667 None:intergenic 40.0%
!! AGCTTGTTGCATTGACAGTA+TGG + chr8.2:13155167-13155186 MS.gene036708:intron 40.0%
!! GTGATGTTTTTGTCCCAAGA+GGG + chr8.2:13153999-13154018 MS.gene036708:CDS 40.0%
!!! ACATTAGCCTTCTTTTCTGG+TGG + chr8.2:13155705-13155724 MS.gene036708:CDS 40.0%
!!! ACCACATTAGCCTTCTTTTC+TGG + chr8.2:13155702-13155721 MS.gene036708:CDS 40.0%
!!! ATTAGCCTTCTTTTCTGGTG+GGG + chr8.2:13155707-13155726 MS.gene036708:CDS 40.0%
!!! CATTAGCCTTCTTTTCTGGT+GGG + chr8.2:13155706-13155725 MS.gene036708:CDS 40.0%
AAAAAGTTGTCTGACCGCGA+TGG - chr8.2:13154274-13154293 None:intergenic 45.0%
AAAGTTAGGCCCACCAAATC+TGG + chr8.2:13155659-13155678 MS.gene036708:CDS 45.0%
AAGTTAGGCCCACCAAATCT+GGG + chr8.2:13155660-13155679 MS.gene036708:CDS 45.0%
ATCTCTTCACCATCTCCATG+TGG - chr8.2:13154415-13154434 None:intergenic 45.0%
CAGACTTCATAGAATGGTGG+AGG + chr8.2:13154667-13154686 MS.gene036708:CDS 45.0%
CCAACTGGTAAGTACACTTC+AGG - chr8.2:13155639-13155658 None:intergenic 45.0%
CCGTGACAGACTTCATAGAA+TGG + chr8.2:13154661-13154680 MS.gene036708:CDS 45.0%
CCTGAAGTGTACTTACCAGT+TGG + chr8.2:13155636-13155655 MS.gene036708:CDS 45.0%
CTAGCAACTTCAACATGCTG+AGG + chr8.2:13154804-13154823 MS.gene036708:intron 45.0%
CTAGCCACTTCATATCCACT+TGG - chr8.2:13155864-13155883 None:intergenic 45.0%
GTGTCCAAGTGGATATGAAG+TGG + chr8.2:13155857-13155876 MS.gene036708:CDS 45.0%
TCTCCTCTCTTGTCATGACT+GGG + chr8.2:13154754-13154773 MS.gene036708:CDS 45.0%
TGAAGGGTTCCAGCCTAAAA+GGG + chr8.2:13155602-13155621 MS.gene036708:CDS 45.0%
TGATGCTGTAACTACCATCG+CGG + chr8.2:13154257-13154276 MS.gene036708:intron 45.0%
TTACCCAGTCATGACAAGAG+AGG - chr8.2:13154760-13154779 None:intergenic 45.0%
TTCTCCTCTCTTGTCATGAC+TGG + chr8.2:13154753-13154772 MS.gene036708:CDS 45.0%
TTCTGTAGATGGACCCTCTT+GGG - chr8.2:13154015-13154034 None:intergenic 45.0%
TTTCTGTAGATGGACCCTCT+TGG - chr8.2:13154016-13154035 None:intergenic 45.0%
! AGTGGCTAGTCCAAGAATTG+TGG + chr8.2:13155875-13155894 MS.gene036708:CDS 45.0%
! GGGATAGACACATCCCTTTT+AGG - chr8.2:13155618-13155637 None:intergenic 45.0%
! TAGACACATCCCTTTTAGGC+TGG - chr8.2:13155614-13155633 None:intergenic 45.0%
!! ACTAGGGTGCTTAGCCTTAA+AGG - chr8.2:13154555-13154574 None:intergenic 45.0%
!! CGTGATGTTTTTGTCCCAAG+AGG + chr8.2:13153998-13154017 MS.gene036708:CDS 45.0%
!! CTAGGGTGCTTAGCCTTAAA+GGG - chr8.2:13154554-13154573 None:intergenic 45.0%
!! TAGGGTGCTTAGCCTTAAAG+GGG - chr8.2:13154553-13154572 None:intergenic 45.0%
!! TGGTTCTGTTTGATGGGCTT+TGG - chr8.2:13155686-13155705 None:intergenic 45.0%
AATCAGGAGCCACATGGAGA+TGG + chr8.2:13154403-13154422 MS.gene036708:intron 50.0%
CTGAAGGGTTCCAGCCTAAA+AGG + chr8.2:13155601-13155620 MS.gene036708:CDS 50.0%
TAAGGCTAAGCACCCTAGTG+AGG + chr8.2:13154556-13154575 MS.gene036708:CDS 50.0%
ATGGGCCCCACCAGAAAAGA+AGG - chr8.2:13155715-13155734 None:intergenic 55.0%
GGTGGGCCTAACTTTCCAAC+TGG - chr8.2:13155654-13155673 None:intergenic 55.0%
! GATGGGCTTTGGCCCAGATT+TGG - chr8.2:13155675-13155694 None:intergenic 55.0%
! GGCTTTGGCCCAGATTTGGT+GGG - chr8.2:13155671-13155690 None:intergenic 55.0%
!! TTCTTTTCTGGTGGGGCCCA+TGG + chr8.2:13155714-13155733 MS.gene036708:CDS 55.0%
! GGGCTTTGGCCCAGATTTGG+TGG - chr8.2:13155672-13155691 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 13153697 13156196 13153697 ID=MS.gene036708
chr8.2 mRNA 13153697 13156196 13153697 ID=MS.gene036708.t1;Parent=MS.gene036708
chr8.2 exon 13153697 13153792 13153697 ID=MS.gene036708.t1.exon1;Parent=MS.gene036708.t1
chr8.2 CDS 13153697 13153792 13153697 ID=cds.MS.gene036708.t1;Parent=MS.gene036708.t1
chr8.2 exon 13153893 13154053 13153893 ID=MS.gene036708.t1.exon2;Parent=MS.gene036708.t1
chr8.2 CDS 13153893 13154053 13153893 ID=cds.MS.gene036708.t1;Parent=MS.gene036708.t1
chr8.2 exon 13154409 13154775 13154409 ID=MS.gene036708.t1.exon3;Parent=MS.gene036708.t1
chr8.2 CDS 13154409 13154775 13154409 ID=cds.MS.gene036708.t1;Parent=MS.gene036708.t1
chr8.2 exon 13155528 13156196 13155528 ID=MS.gene036708.t1.exon4;Parent=MS.gene036708.t1
chr8.2 CDS 13155528 13156196 13155528 ID=cds.MS.gene036708.t1;Parent=MS.gene036708.t1
Gene Sequence

>MS.gene036708

ATGAATAACACAACACAAGTAATTAAACCTCATCAGTTTCTGACTTATAACTCTGCATATAGAAGCTTTGACCATAAAGCAAACAGTAGAATTAAGGTATTCATGTTCAACAAAAAAAGTTTCAGCTCAAAGTTTTGTATTATCTATCTGTTTTCTCAAACCAAATTAAAGTTTCTATTTCATTGTTTGCATGCAGAAAATTATGACTAGCTTGGATAGAGTTGAAGAAAGTTTGGCAGAAGCTCGAGCCTCGATTCGAGAAGCAATTCTTTCAAGGAATTACAGTACTACTTCAAGGAGGCGTGATGTTTTTGTCCCAAGAGGGTCCATCTACAGAAATCCATATGCTTTTCATCAGTTAAGTTTGAGAAGTTCTGAATTAAAATTTCAATTGTTTTAGTCTAATTTTTAAAAATGACACTGTTGCATTTGCGACTTTGATATTATAAAAAAAATCATAATCAAATATAGTTACCAAGACTTTGATATATACTGCAAAAAATCATAGTCAAATATAGTTGACGCAACCGCGTAATTGTGATTGCAGACTTAAAAAATTGTGATGCTGTAACTACCATCGCGGTCAGACAACTTTTTAAAACATTGGATTTGTAGTTGCACCTGCAATTTAAAACCTTAATAACCAATTATTATTATCATTAGAATTTATTGCTAACAAGTCCTTGTTTTTTTCTAAAATTATGAAAATCAGGAGCCACATGGAGATGGTGAAGAGATTGAAGATATGGGTATACAAAGAAGGAGAGCAACCAATAGTACATGATGGACCATTGAACAACATATATGCAATTGAAGGTCAATTCATTGATGAAATAGACAATAGCATAAAGAGCCCCTTTAAGGCTAAGCACCCTAGTGAGGCACACATATTTTTCCTTCCTTTTAGTGTTGCAAATGTGGTTCAATATGTTTATAAGCCAATTATGTCCAAAAAGGATTTCAACCGTGACAGACTTCATAGAATGGTGGAGGATTATGTAAATGTTGTTGCTGATAAGTATCCTTATTGGAATAGAAGTAATGGTGCTGACCATTTTCTCCTCTCTTGTCATGACTGGGTAATTTTCTTGTCACTTCATTTGATTACTAGCAACTTCAACATGCTGAGGTTTATTATTGTTATTTTCATAATATGCATGTATGCACTGTCTAGTGTCTATTTAACTCTGCATTAAAATTTGTTTAACCATCATGTACATTTTGAAAATATTACTAATATATACTAAAAAAAAACAATACTAATTAGTGGAAAAAGTATATACAATGGATTTGATGATGTTAGTTGCTCAATTGACAATGATATGTATTGTCGATAAAGATCGGACGATTGAGATTCTGACTTTTTGACTAGTTGAAGTCATAACGTAAACTATTTGATTTCTATTTAACAATTTAAATTTGTCGAAGTTATAATGTGAGTTGAAGGATCTCTATCCAATGGCTTAGATCAGCTTGTTGCATTGACAGTATGGATTAATTATTGATTGTAGTGAATTTGGTTATGAAGGGCATGTCCCTATTTTTTATTTTATTTTGCTGAAACATGTCATGATTTTAATCCATAATGTATTTTTAGAAAAACCTGGTGTCAGAAAAGAACTATATTAATTGCTGTAATTGAATTAAAACCTGCAGATAGAATAAATGCCTTGCTTGGAGATTCATATTTCATGTAATGTTTTCCATTCTGCAGTTCAATTAGTCTGACATAATAGAAATATTTTATCAACATTATAAGCTATGCTTTAAATTTTTTAATGTGTGCAACCAAAGTTTAAATAAAATGCTTTTACTTTACTTGATAATTCAGGCACCAGAAATCTCAGATGCAAATCCAAACCTCTTCAAAAACTTCACAAGAGTCTTATGCAATGCAAACACTTCTGAAGGGTTCCAGCCTAAAAGGGATGTGTCTATCCCTGAAGTGTACTTACCAGTTGGAAAGTTAGGCCCACCAAATCTGGGCCAAAGCCCATCAAACAGAACCACATTAGCCTTCTTTTCTGGTGGGGCCCATGGTGACCTTAGAAAATTGTTACTAAATCATTGGAAGGACAAAGATGCACAAGTTCAAGTTCATGAGTATCTTCCAAAGGGTCAAAACTATACACAATTAATGGGACTAAGTAAATTTTGTTTGTGTCCAAGTGGATATGAAGTGGCTAGTCCAAGAATTGTGGAAGCAATTAATGCTGGGTGTGTGCCTGTGATTATTTCTCAGAATTATTCCTTGCCTTTCAATGATGTGTTGAATTGGAGTGAATTTTCAGTGGAGATTCCAGTGGAGAAAATAGTAGAGATTAAGACTATATTACAAAATATTTCAAAAGATAAGTACATGAAGTTGCATATGAATGTGATGAAAGTTCAAAAGCATTTTGTTATGAATAGGCCTGCTAAGCCTTTTGATGTGATGCACATGATACTTCATTCAATTTGGCTTAGAAGACTTAATTTCAGACTCATTGATTCACAATAA
Protein sequence

>MS.gene036708.t1

MNNTTQVIKPHQFLTYNSAYRSFDHKANSRIKKIMTSLDRVEESLAEARASIREAILSRNYSTTSRRRDVFVPRGSIYRNPYAFHQSHMEMVKRLKIWVYKEGEQPIVHDGPLNNIYAIEGQFIDEIDNSIKSPFKAKHPSEAHIFFLPFSVANVVQYVYKPIMSKKDFNRDRLHRMVEDYVNVVADKYPYWNRSNGADHFLLSCHDWAPEISDANPNLFKNFTRVLCNANTSEGFQPKRDVSIPEVYLPVGKLGPPNLGQSPSNRTTLAFFSGGAHGDLRKLLLNHWKDKDAQVQVHEYLPKGQNYTQLMGLSKFCLCPSGYEVASPRIVEAINAGCVPVIISQNYSLPFNDVLNWSEFSVEIPVEKIVEIKTILQNISKDKYMKLHMNVMKVQKHFVMNRPAKPFDVMHMILHSIWLRRLNFRLIDSQ