Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70517.t1 | KEH35171.1 | 95.5 | 400 | 16 | 1 | 34 | 431 | 29 | 428 | 6.20E-228 | 800 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70517.t1 | Q9SSE8 | 66.6 | 365 | 121 | 1 | 68 | 431 | 87 | 451 | 2.7e-147 | 523.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70517.t1 | A0A072V0D6 | 95.5 | 400 | 16 | 1 | 34 | 431 | 29 | 428 | 4.5e-228 | 800.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049356 | MS.gene70517 | 0.840973 | 6.30E-58 | -1.69E-46 |
MS.gene049369 | MS.gene70517 | 0.835996 | 1.21E-56 | -1.69E-46 |
MS.gene049396 | MS.gene70517 | 0.814815 | 1.27E-51 | -1.69E-46 |
MS.gene050499 | MS.gene70517 | 0.817955 | 2.52E-52 | -1.69E-46 |
MS.gene051509 | MS.gene70517 | 0.805134 | 1.55E-49 | -1.69E-46 |
MS.gene053449 | MS.gene70517 | 0.804657 | 1.94E-49 | -1.69E-46 |
MS.gene053912 | MS.gene70517 | 0.821594 | 3.72E-53 | -1.69E-46 |
MS.gene054486 | MS.gene70517 | 0.802426 | 5.64E-49 | -1.69E-46 |
MS.gene055909 | MS.gene70517 | 0.804713 | 1.89E-49 | -1.69E-46 |
MS.gene055911 | MS.gene70517 | 0.802891 | 4.52E-49 | -1.69E-46 |
MS.gene056422 | MS.gene70517 | 0.840077 | 1.08E-57 | -1.69E-46 |
MS.gene056487 | MS.gene70517 | 0.819202 | 1.31E-52 | -1.69E-46 |
MS.gene057086 | MS.gene70517 | 0.803629 | 3.18E-49 | -1.69E-46 |
MS.gene057537 | MS.gene70517 | 0.832093 | 1.15E-55 | -1.69E-46 |
MS.gene057927 | MS.gene70517 | 0.824271 | 8.83E-54 | -1.69E-46 |
MS.gene058075 | MS.gene70517 | 0.832102 | 1.14E-55 | -1.69E-46 |
MS.gene058459 | MS.gene70517 | 0.820611 | 6.26E-53 | -1.69E-46 |
MS.gene058928 | MS.gene70517 | 0.823543 | 1.31E-53 | -1.69E-46 |
MS.gene059305 | MS.gene70517 | 0.801148 | 1.03E-48 | -1.69E-46 |
MS.gene059366 | MS.gene70517 | 0.81549 | 9.00E-52 | -1.69E-46 |
MS.gene059367 | MS.gene70517 | 0.816177 | 6.33E-52 | -1.69E-46 |
MS.gene059368 | MS.gene70517 | 0.837252 | 5.80E-57 | -1.69E-46 |
MS.gene059674 | MS.gene70517 | 0.810126 | 1.35E-50 | -1.69E-46 |
MS.gene059711 | MS.gene70517 | 0.826487 | 2.64E-54 | -1.69E-46 |
MS.gene059807 | MS.gene70517 | 0.824809 | 6.60E-54 | -1.69E-46 |
MS.gene061041 | MS.gene70517 | 0.817125 | 3.88E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene068605 | MS.gene70517 | PPI |
MS.gene70517 | MS.gene036708 | PPI |
MS.gene027811 | MS.gene70517 | PPI |
MS.gene70517 | MS.gene58027 | PPI |
MS.gene069139 | MS.gene70517 | PPI |
MS.gene70517 | MS.gene070886 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70517.t1 | MTR_3g080690 | 95.477 | 398 | 18 | 0 | 34 | 431 | 29 | 426 | 0.0 | 803 |
MS.gene70517.t1 | MTR_3g081240 | 95.500 | 400 | 16 | 1 | 34 | 431 | 29 | 428 | 0.0 | 803 |
MS.gene70517.t1 | MTR_3g097310 | 62.842 | 366 | 134 | 1 | 66 | 431 | 110 | 473 | 7.00e-164 | 474 |
MS.gene70517.t1 | MTR_1g061760 | 58.038 | 367 | 147 | 2 | 66 | 431 | 106 | 466 | 3.56e-153 | 446 |
MS.gene70517.t1 | MTR_7g103260 | 54.620 | 368 | 157 | 2 | 66 | 431 | 20 | 379 | 2.88e-147 | 428 |
MS.gene70517.t1 | MTR_7g103270 | 52.538 | 394 | 168 | 3 | 40 | 431 | 4 | 380 | 4.73e-146 | 425 |
MS.gene70517.t1 | MTR_3g106690 | 57.764 | 322 | 133 | 2 | 113 | 431 | 52 | 373 | 2.97e-132 | 389 |
MS.gene70517.t1 | MTR_4g115540 | 50.400 | 375 | 178 | 3 | 65 | 433 | 236 | 608 | 9.64e-128 | 386 |
MS.gene70517.t1 | MTR_4g115460 | 48.806 | 377 | 183 | 6 | 61 | 431 | 72 | 444 | 7.08e-121 | 363 |
MS.gene70517.t1 | MTR_4g115530 | 47.989 | 373 | 185 | 4 | 65 | 431 | 3 | 372 | 1.68e-117 | 352 |
MS.gene70517.t1 | MTR_4g115530 | 49.057 | 318 | 156 | 2 | 120 | 431 | 1 | 318 | 5.98e-103 | 313 |
MS.gene70517.t1 | MTR_1g006600 | 44.974 | 378 | 190 | 5 | 58 | 431 | 206 | 569 | 6.75e-100 | 313 |
MS.gene70517.t1 | MTR_4g115540 | 50.498 | 301 | 141 | 3 | 65 | 359 | 236 | 534 | 4.92e-98 | 306 |
MS.gene70517.t1 | MTR_4g100730 | 45.349 | 344 | 178 | 5 | 95 | 431 | 178 | 518 | 5.79e-98 | 306 |
MS.gene70517.t1 | MTR_7g103150 | 43.817 | 372 | 192 | 5 | 64 | 431 | 109 | 467 | 8.72e-98 | 304 |
MS.gene70517.t1 | MTR_8g102840 | 41.953 | 379 | 201 | 6 | 58 | 431 | 228 | 592 | 1.34e-96 | 305 |
MS.gene70517.t1 | MTR_1g090733 | 42.975 | 363 | 188 | 7 | 75 | 431 | 181 | 530 | 1.32e-95 | 300 |
MS.gene70517.t1 | MTR_3g110198 | 45.455 | 330 | 173 | 3 | 106 | 431 | 250 | 576 | 1.43e-94 | 299 |
MS.gene70517.t1 | MTR_3g110200 | 43.275 | 342 | 184 | 4 | 94 | 431 | 238 | 573 | 3.75e-92 | 293 |
MS.gene70517.t1 | MTR_8g102840 | 39.286 | 308 | 168 | 6 | 58 | 360 | 228 | 521 | 9.13e-67 | 224 |
MS.gene70517.t1 | MTR_5g031480 | 35.088 | 342 | 206 | 6 | 104 | 439 | 74 | 405 | 3.63e-64 | 214 |
MS.gene70517.t1 | MTR_5g049790 | 35.103 | 339 | 194 | 7 | 104 | 439 | 110 | 425 | 1.67e-59 | 202 |
MS.gene70517.t1 | MTR_7g085840 | 35.562 | 329 | 187 | 10 | 120 | 437 | 1 | 315 | 8.36e-49 | 171 |
MS.gene70517.t1 | MTR_5g031480 | 33.708 | 267 | 161 | 6 | 104 | 364 | 74 | 330 | 7.05e-41 | 150 |
MS.gene70517.t1 | MTR_5g031480 | 33.835 | 266 | 160 | 6 | 104 | 363 | 74 | 329 | 1.62e-40 | 149 |
MS.gene70517.t1 | MTR_5g049790 | 35.211 | 213 | 125 | 5 | 104 | 313 | 127 | 329 | 1.10e-30 | 122 |
MS.gene70517.t1 | MTR_5g049790 | 35.211 | 213 | 125 | 5 | 104 | 313 | 110 | 312 | 1.42e-30 | 121 |
MS.gene70517.t1 | MTR_8g096140 | 28.470 | 281 | 175 | 7 | 151 | 412 | 81 | 354 | 3.69e-25 | 108 |
MS.gene70517.t1 | MTR_8g096160 | 26.882 | 279 | 182 | 5 | 151 | 412 | 81 | 354 | 6.31e-25 | 107 |
MS.gene70517.t1 | MTR_2g084245 | 28.221 | 326 | 191 | 13 | 120 | 414 | 85 | 398 | 8.84e-23 | 101 |
MS.gene70517.t1 | MTR_4g057500 | 27.914 | 326 | 188 | 13 | 122 | 414 | 105 | 416 | 1.94e-22 | 100 |
MS.gene70517.t1 | MTR_3g037720 | 26.790 | 377 | 215 | 17 | 121 | 447 | 112 | 477 | 1.93e-20 | 94.7 |
MS.gene70517.t1 | MTR_8g080490 | 25.828 | 302 | 205 | 8 | 146 | 434 | 97 | 392 | 8.04e-18 | 86.3 |
MS.gene70517.t1 | MTR_6g027310 | 26.712 | 292 | 191 | 10 | 154 | 431 | 174 | 456 | 1.17e-17 | 86.3 |
MS.gene70517.t1 | MTR_4g084200 | 24.915 | 293 | 190 | 10 | 161 | 433 | 158 | 440 | 4.75e-17 | 84.3 |
MS.gene70517.t1 | MTR_3g085480 | 25.436 | 287 | 191 | 10 | 163 | 434 | 116 | 394 | 2.12e-15 | 78.6 |
MS.gene70517.t1 | MTR_4g084200 | 24.028 | 283 | 185 | 10 | 161 | 423 | 158 | 430 | 3.08e-14 | 75.1 |
MS.gene70517.t1 | MTR_4g077920 | 25.589 | 297 | 191 | 10 | 154 | 426 | 98 | 388 | 3.73e-14 | 75.1 |
MS.gene70517.t1 | MTR_7g087100 | 25.347 | 288 | 188 | 10 | 163 | 434 | 188 | 464 | 7.46e-14 | 74.3 |
MS.gene70517.t1 | MTR_4g084200 | 24.275 | 276 | 179 | 10 | 161 | 416 | 158 | 423 | 1.08e-13 | 73.6 |
MS.gene70517.t1 | MTR_1g029350 | 26.168 | 321 | 206 | 13 | 155 | 456 | 118 | 426 | 1.88e-12 | 69.7 |
MS.gene70517.t1 | MTR_5g081290 | 30.464 | 151 | 87 | 3 | 120 | 270 | 1 | 133 | 2.24e-12 | 67.8 |
MS.gene70517.t1 | MTR_1g061790 | 39.669 | 121 | 57 | 4 | 47 | 164 | 87 | 194 | 4.45e-12 | 65.5 |
MS.gene70517.t1 | MTR_1g097090 | 25.597 | 293 | 181 | 9 | 163 | 425 | 139 | 424 | 5.18e-12 | 68.6 |
MS.gene70517.t1 | MTR_1g097090 | 25.597 | 293 | 181 | 9 | 163 | 425 | 139 | 424 | 6.38e-12 | 68.2 |
MS.gene70517.t1 | MTR_4g077920 | 25.877 | 228 | 148 | 8 | 215 | 426 | 224 | 446 | 2.27e-11 | 66.6 |
MS.gene70517.t1 | MTR_4g077920 | 25.877 | 228 | 148 | 8 | 215 | 426 | 224 | 446 | 2.64e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70517.t1 | AT3G07620 | 67.213 | 366 | 117 | 3 | 68 | 431 | 76 | 440 | 0.0 | 521 |
MS.gene70517.t1 | AT5G03795 | 56.948 | 367 | 152 | 1 | 65 | 431 | 137 | 497 | 3.20e-143 | 422 |
MS.gene70517.t1 | AT5G25310 | 50.000 | 388 | 182 | 5 | 64 | 447 | 98 | 477 | 2.19e-132 | 393 |
MS.gene70517.t1 | AT5G11130 | 45.125 | 441 | 214 | 6 | 22 | 450 | 53 | 477 | 5.35e-126 | 377 |
MS.gene70517.t1 | AT5G20260 | 47.692 | 390 | 196 | 6 | 64 | 450 | 82 | 466 | 9.40e-118 | 355 |
MS.gene70517.t1 | AT5G11130 | 50.448 | 335 | 160 | 3 | 120 | 450 | 1 | 333 | 5.46e-117 | 348 |
MS.gene70517.t1 | AT3G42180 | 47.727 | 396 | 196 | 3 | 65 | 451 | 77 | 470 | 1.80e-114 | 347 |
MS.gene70517.t1 | AT5G33290 | 49.133 | 346 | 165 | 3 | 97 | 433 | 139 | 482 | 1.41e-111 | 340 |
MS.gene70517.t1 | AT4G16745 | 45.257 | 369 | 185 | 6 | 70 | 431 | 156 | 514 | 8.41e-106 | 327 |
MS.gene70517.t1 | AT5G20260 | 48.378 | 339 | 172 | 3 | 115 | 450 | 23 | 361 | 2.18e-105 | 320 |
MS.gene70517.t1 | AT3G42180 | 47.507 | 341 | 170 | 2 | 120 | 451 | 1 | 341 | 2.75e-105 | 318 |
MS.gene70517.t1 | AT5G20260 | 48.503 | 334 | 169 | 3 | 120 | 450 | 1 | 334 | 4.23e-105 | 318 |
MS.gene70517.t1 | AT4G16745 | 44.959 | 367 | 185 | 6 | 70 | 429 | 156 | 512 | 1.62e-103 | 322 |
MS.gene70517.t1 | AT5G19670 | 43.807 | 331 | 178 | 3 | 106 | 431 | 263 | 590 | 3.37e-96 | 304 |
MS.gene70517.t1 | AT5G19670 | 43.807 | 331 | 178 | 3 | 106 | 431 | 263 | 590 | 3.37e-96 | 304 |
MS.gene70517.t1 | AT4G32790 | 43.750 | 368 | 189 | 6 | 69 | 431 | 222 | 576 | 3.99e-96 | 303 |
MS.gene70517.t1 | AT4G32790 | 43.750 | 368 | 189 | 6 | 69 | 431 | 222 | 576 | 3.99e-96 | 303 |
MS.gene70517.t1 | AT4G32790 | 43.750 | 368 | 189 | 6 | 69 | 431 | 222 | 576 | 3.99e-96 | 303 |
MS.gene70517.t1 | AT5G37000 | 38.000 | 400 | 226 | 7 | 51 | 432 | 140 | 535 | 2.06e-89 | 285 |
MS.gene70517.t1 | AT5G25820 | 43.516 | 347 | 183 | 8 | 93 | 431 | 294 | 635 | 1.40e-88 | 285 |
MS.gene70517.t1 | AT5G11610 | 39.295 | 369 | 205 | 8 | 68 | 431 | 174 | 528 | 5.43e-86 | 275 |
MS.gene70517.t1 | AT4G38040 | 34.412 | 340 | 207 | 6 | 104 | 437 | 84 | 413 | 3.26e-59 | 202 |
MS.gene70517.t1 | AT5G11610 | 37.024 | 289 | 164 | 7 | 68 | 352 | 174 | 448 | 3.24e-58 | 200 |
MS.gene70517.t1 | AT4G38040 | 34.161 | 322 | 196 | 6 | 104 | 419 | 84 | 395 | 2.10e-53 | 186 |
MS.gene70517.t1 | AT5G11610 | 36.313 | 179 | 102 | 3 | 68 | 244 | 174 | 342 | 1.41e-30 | 122 |
MS.gene70517.t1 | AT1G27440 | 26.882 | 279 | 182 | 6 | 151 | 412 | 77 | 350 | 1.70e-25 | 108 |
MS.gene70517.t1 | AT5G61840 | 25.879 | 313 | 200 | 8 | 124 | 412 | 49 | 353 | 4.63e-24 | 104 |
MS.gene70517.t1 | AT2G28110 | 26.316 | 304 | 196 | 9 | 163 | 443 | 138 | 436 | 1.66e-20 | 94.7 |
MS.gene70517.t1 | AT1G74680 | 28.028 | 289 | 190 | 8 | 158 | 434 | 144 | 426 | 6.81e-20 | 92.8 |
MS.gene70517.t1 | AT1G67410 | 27.055 | 292 | 195 | 9 | 157 | 434 | 113 | 400 | 9.00e-20 | 92.0 |
MS.gene70517.t1 | AT2G35100 | 24.912 | 285 | 181 | 10 | 161 | 426 | 125 | 395 | 6.20e-18 | 86.7 |
MS.gene70517.t1 | AT3G03650 | 28.378 | 296 | 184 | 11 | 158 | 437 | 188 | 471 | 1.96e-17 | 85.5 |
MS.gene70517.t1 | AT5G22940 | 24.924 | 329 | 201 | 12 | 155 | 448 | 146 | 463 | 5.72e-17 | 84.0 |
MS.gene70517.t1 | AT5G22940 | 24.924 | 329 | 201 | 12 | 155 | 448 | 175 | 492 | 6.81e-17 | 84.0 |
MS.gene70517.t1 | AT3G45400 | 26.923 | 286 | 184 | 8 | 163 | 433 | 154 | 429 | 8.77e-17 | 83.2 |
MS.gene70517.t1 | AT5G16890 | 23.776 | 286 | 188 | 10 | 160 | 428 | 182 | 454 | 8.63e-14 | 74.3 |
MS.gene70517.t1 | AT5G44930 | 27.632 | 228 | 131 | 11 | 214 | 422 | 175 | 387 | 2.93e-12 | 68.9 |
MS.gene70517.t1 | AT5G44930 | 27.632 | 228 | 131 | 11 | 214 | 422 | 175 | 387 | 2.93e-12 | 68.9 |
MS.gene70517.t1 | AT1G34270 | 29.832 | 238 | 133 | 11 | 215 | 425 | 195 | 425 | 4.02e-11 | 65.9 |
Find 104 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTGCATTGATCTTCTTAT+AGG | 0.128865 | 3.1:+67211303 | None:intergenic |
GGGAATATTTATCAACTTAT+TGG | 0.144366 | 3.1:-67210135 | MS.gene70517:CDS |
CCTGTTACCAAGTTGATTTC+AGG | 0.167077 | 3.1:+67209692 | None:intergenic |
ACCTCAGGTGGTTGGTTTAA+TGG | 0.183364 | 3.1:+67208396 | None:intergenic |
TAAATTGCCTCAACAATTCT+TGG | 0.244588 | 3.1:+67209443 | None:intergenic |
GGAAATGATGCATCTTTCTT+TGG | 0.250368 | 3.1:+67209713 | None:intergenic |
ACAATTCTGGCTTTCTTTGC+AGG | 0.251792 | 3.1:-67209626 | MS.gene70517:CDS |
TATTCGTGACAAAGCTGTTT+TGG | 0.263997 | 3.1:-67210012 | MS.gene70517:CDS |
ACAGCTTTGTCACGAATAAC+TGG | 0.273001 | 3.1:+67210017 | None:intergenic |
TATTGTTGTGATATTATAAT+AGG | 0.275605 | 3.1:+67209407 | None:intergenic |
TACTCATCTTCATTGTTTCA+TGG | 0.291583 | 3.1:+67209504 | None:intergenic |
AGGATCATAACAACACTAAA+TGG | 0.293875 | 3.1:+67210056 | None:intergenic |
CCTGAAATCAACTTGGTAAC+AGG | 0.294494 | 3.1:-67209692 | MS.gene70517:CDS |
TACAATGGAGAATTGAATTT+AGG | 0.295142 | 3.1:-67211336 | MS.gene70517:CDS |
TCATGCTTTCTTGTCATGAT+TGG | 0.298264 | 3.1:-67209911 | MS.gene70517:CDS |
TTGATAATTCAATGAGTAAT+GGG | 0.306989 | 3.1:+67211574 | None:intergenic |
ATATAGGAGTTACCACTTAA+TGG | 0.323102 | 3.1:-67210243 | MS.gene70517:intron |
TAGCAGGAAGGATCTTCTTC+TGG | 0.323400 | 3.1:+67208482 | None:intergenic |
AATGCAAGGAGATAGAAATT+TGG | 0.324834 | 3.1:-67211289 | MS.gene70517:CDS |
CAACTTTCCAGGCTAAAGTA+TGG | 0.325379 | 3.1:-67208456 | MS.gene70517:CDS |
CATGCTTTCTTGTCATGATT+GGG | 0.337722 | 3.1:-67209910 | MS.gene70517:intron |
AACAAAATTTCCTTAAGCTT+GGG | 0.346625 | 3.1:+67209317 | None:intergenic |
TAAATTCAATTCTCCATTGT+AGG | 0.358796 | 3.1:+67211338 | None:intergenic |
TAGTGAAATTCCCAAGCTTA+AGG | 0.365820 | 3.1:-67209327 | MS.gene70517:CDS |
TGAAATACATCATATCTCTT+AGG | 0.369121 | 3.1:+67209215 | None:intergenic |
CAATCAAGAACATCACTAAA+AGG | 0.369286 | 3.1:+67209377 | None:intergenic |
TCCTGCTATAACAACTTTCC+AGG | 0.381638 | 3.1:-67208467 | MS.gene70517:CDS |
CAACAAAATTTCCTTAAGCT+TGG | 0.385217 | 3.1:+67209316 | None:intergenic |
TATGACTAGTACCAACAGTA+TGG | 0.392781 | 3.1:+67208536 | None:intergenic |
TATCACACAAATATGCATAT+TGG | 0.394028 | 3.1:-67209959 | MS.gene70517:CDS |
AAGTAGACATGAGCTTCATT+TGG | 0.398848 | 3.1:+67210083 | None:intergenic |
TTCACATACCATGTTGCCCT+TGG | 0.411752 | 3.1:+67209797 | None:intergenic |
AGAAATTTGGAGAAGGTTGA+AGG | 0.417058 | 3.1:-67211276 | MS.gene70517:CDS |
TAAATAGCTTCTCCATTAAG+TGG | 0.424602 | 3.1:+67210231 | None:intergenic |
TTTGTACATGTAGGAGGATG+AGG | 0.448328 | 3.1:-67211379 | MS.gene70517:intron |
AACATGGAACAGAACAATTC+TGG | 0.451636 | 3.1:-67209639 | MS.gene70517:CDS |
TATCTTTGTTCTTCCAATGT+TGG | 0.453246 | 3.1:+67209570 | None:intergenic |
TTTGATAATTCAATGAGTAA+TGG | 0.455088 | 3.1:+67211573 | None:intergenic |
CATGACAAGAAAGCATGAAA+TGG | 0.462671 | 3.1:+67209916 | None:intergenic |
GCCTGGAAAGTTGTTATAGC+AGG | 0.463018 | 3.1:+67208466 | None:intergenic |
CTTGCCACTTCCCACCCACT+TGG | 0.464582 | 3.1:+67209467 | None:intergenic |
TTGCAAGAATATATATTCAA+TGG | 0.476651 | 3.1:-67210159 | MS.gene70517:CDS |
GCATATTGGAATAGAAGTTA+TGG | 0.477539 | 3.1:-67209945 | MS.gene70517:CDS |
GACCGTCCCATACTTTAGCC+TGG | 0.479999 | 3.1:+67208449 | None:intergenic |
AAGAGGCAGTACGGTGTCAT+TGG | 0.482673 | 3.1:+67211206 | None:intergenic |
TTGGTAACAGGAGAAACAAC+AGG | 0.491020 | 3.1:-67209680 | MS.gene70517:CDS |
CTTGAAAGGTAAGTAATACA+TGG | 0.496221 | 3.1:+67208510 | None:intergenic |
GGAGAAACAACAGGTTTACT+TGG | 0.502236 | 3.1:-67209671 | MS.gene70517:CDS |
TTGTACATGTAGGAGGATGA+GGG | 0.505853 | 3.1:-67211378 | MS.gene70517:intron |
ATGGCACACTCTCTTACATC+AGG | 0.507892 | 3.1:+67208415 | None:intergenic |
TTGTCCAAGTGGGTGGGAAG+TGG | 0.510845 | 3.1:-67209471 | MS.gene70517:CDS |
ATTGTATTTGTCCAAGTGGG+TGG | 0.518103 | 3.1:-67209478 | MS.gene70517:CDS |
ATACACCTTGTATGATGAAA+GGG | 0.521451 | 3.1:+67211523 | None:intergenic |
AGGTCATGAAACACAAAAGT+TGG | 0.523989 | 3.1:+67208571 | None:intergenic |
ACTCTCTGACCTCAGGTGGT+TGG | 0.529355 | 3.1:+67208388 | None:intergenic |
TATACACCTTGTATGATGAA+AGG | 0.534728 | 3.1:+67211522 | None:intergenic |
AGAATTGTTCTGTTCCATGT+TGG | 0.536389 | 3.1:+67209641 | None:intergenic |
GTCAATTGTACCCATACTGT+TGG | 0.538189 | 3.1:-67208547 | MS.gene70517:CDS |
GAAATATATAAGATTGCAAG+AGG | 0.540677 | 3.1:-67209279 | MS.gene70517:CDS |
ATTCAATGAGTAATGGGGTG+TGG | 0.547831 | 3.1:+67211580 | None:intergenic |
ATTACTCATTGAATTATCAA+AGG | 0.556943 | 3.1:-67211571 | MS.gene70517:CDS |
ATCATTTCCTGAAATCAACT+TGG | 0.557019 | 3.1:-67209699 | MS.gene70517:CDS |
CTGGGTGAAAGAGATGTTCA+AGG | 0.557117 | 3.1:+67210036 | None:intergenic |
AGGAGATAGAAATTTGGAGA+AGG | 0.557354 | 3.1:-67211283 | MS.gene70517:CDS |
AATACATCATATCTCTTAGG+AGG | 0.557887 | 3.1:+67209218 | None:intergenic |
TTCCAATGTTGGAAAAGCAA+TGG | 0.557955 | 3.1:+67209581 | None:intergenic |
ATCTACCCTTTCATCATACA+AGG | 0.560213 | 3.1:-67211528 | MS.gene70517:CDS |
GAAGGAAATGGATGCTGCAA+TGG | 0.560884 | 3.1:-67208954 | MS.gene70517:intron |
TACTTGGTGGCTATCCAACA+TGG | 0.562509 | 3.1:-67209655 | MS.gene70517:CDS |
GAAACAACAGGTTTACTTGG+TGG | 0.562533 | 3.1:-67209668 | MS.gene70517:CDS |
ATTGAATATATATTCTTGCA+AGG | 0.562749 | 3.1:+67210161 | None:intergenic |
AACTTTCCAGGCTAAAGTAT+GGG | 0.564439 | 3.1:-67208455 | MS.gene70517:CDS |
CAAGAATATATATTCAATGG+AGG | 0.575833 | 3.1:-67210156 | MS.gene70517:CDS |
TATAAGACAATGGCCTACAA+TGG | 0.581787 | 3.1:-67211351 | MS.gene70517:CDS |
GGTGTCATTGGTTCTCAACA+AGG | 0.582461 | 3.1:+67211218 | None:intergenic |
ATCCTACCTATGAAAAGCAA+AGG | 0.584468 | 3.1:+67211137 | None:intergenic |
AGAGTCCTCAAGAGGCAGTA+CGG | 0.587025 | 3.1:+67211197 | None:intergenic |
TTGTATTTGTCCAAGTGGGT+GGG | 0.588230 | 3.1:-67209477 | MS.gene70517:CDS |
AATATTGTATTTGTCCAAGT+GGG | 0.593695 | 3.1:-67209481 | MS.gene70517:CDS |
ACTTTGCAATGCAAATATCT+CGG | 0.598690 | 3.1:-67209747 | MS.gene70517:CDS |
TTCTTTGCAGGACAAATGCA+TGG | 0.604295 | 3.1:-67209614 | MS.gene70517:CDS |
AAGAATATATATTCAATGGA+GGG | 0.605925 | 3.1:-67210155 | MS.gene70517:CDS |
ATGACTAGTACCAACAGTAT+GGG | 0.610332 | 3.1:+67208537 | None:intergenic |
GGCAAGTCCAAGAATTGTTG+AGG | 0.611209 | 3.1:-67209450 | MS.gene70517:CDS |
TAATCATGAGAGTCCTCAAG+AGG | 0.613023 | 3.1:+67211189 | None:intergenic |
GGGTGTGGATGCATACATCT+TGG | 0.614821 | 3.1:+67211595 | None:intergenic |
TTTCTGTAGATGTCTCCTTG+TGG | 0.615421 | 3.1:+67211162 | None:intergenic |
AAATATTGTATTTGTCCAAG+TGG | 0.615905 | 3.1:-67209482 | MS.gene70517:CDS |
GCACACTCTCTTACATCAGG+TGG | 0.617930 | 3.1:+67208418 | None:intergenic |
CAGCTTTGTCACGAATAACT+GGG | 0.619899 | 3.1:+67210018 | None:intergenic |
TATAGGGACCAAGGGCAACA+TGG | 0.622985 | 3.1:-67209805 | MS.gene70517:intron |
TGACACCGTACTGCCTCTTG+AGG | 0.624877 | 3.1:-67211202 | MS.gene70517:CDS |
GCTAAAGTATGGGACGGTCA+AGG | 0.629484 | 3.1:-67208445 | MS.gene70517:CDS |
AAGGGCAACATGGTATGTGA+AGG | 0.631000 | 3.1:-67209795 | MS.gene70517:CDS |
TGATAATTCAATGAGTAATG+GGG | 0.632019 | 3.1:+67211575 | None:intergenic |
GCACACTCTCTGACCTCAGG+TGG | 0.633417 | 3.1:+67208384 | None:intergenic |
GCCATTAAACCAACCACCTG+AGG | 0.634243 | 3.1:-67208397 | None:intergenic |
CCTATAAGAAGATCAATGCA+AGG | 0.636919 | 3.1:-67211303 | MS.gene70517:CDS |
TTCCAGGCTAAAGTATGGGA+CGG | 0.638739 | 3.1:-67208451 | MS.gene70517:CDS |
GGAAAGTTGTTATAGCAGGA+AGG | 0.640337 | 3.1:+67208470 | None:intergenic |
CAGTATGGGTACAATTGACA+AGG | 0.650569 | 3.1:+67208551 | None:intergenic |
TGAGGGAAGATATAAGACAA+TGG | 0.680989 | 3.1:-67211361 | MS.gene70517:CDS |
AAATATATAAGATTGCAAGA+GGG | 0.689156 | 3.1:-67209278 | MS.gene70517:CDS |
TCTCATGATTATGTTCCACA+AGG | 0.699811 | 3.1:-67211177 | MS.gene70517:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTATATTTCATGAAAA+TGG | - | chr3.1:67210167-67210186 | MS.gene70517:CDS | 10.0% |
!! | ATATGATTATTCATTCTATA+TGG | - | chr3.1:67210809-67210828 | MS.gene70517:intron | 15.0% |
!! | TATTGTTGTGATATTATAAT+AGG | + | chr3.1:67210598-67210617 | None:intergenic | 15.0% |
!! | TGTTCATCTTAATTATATTA+GGG | - | chr3.1:67211407-67211426 | MS.gene70517:intron | 15.0% |
!! | TTGTTCATCTTAATTATATT+AGG | - | chr3.1:67211406-67211425 | MS.gene70517:intron | 15.0% |
!!! | ATTCATTTATTTGTTAATGT+GGG | - | chr3.1:67210890-67210909 | MS.gene70517:intron | 15.0% |
!!! | TATTCATTTATTTGTTAATG+TGG | - | chr3.1:67210889-67210908 | MS.gene70517:intron | 15.0% |
!!! | TTTTTACATAATGATGATAT+AGG | - | chr3.1:67209743-67209762 | MS.gene70517:CDS | 15.0% |
!!! | TTTTTTTGAACAATCAAAAA+TGG | - | chr3.1:67209084-67209103 | MS.gene70517:intron | 15.0% |
!! | AAATATATAAGATTGCAAGA+GGG | - | chr3.1:67210724-67210743 | MS.gene70517:intron | 20.0% |
!! | AAGAATATATATTCAATGGA+GGG | - | chr3.1:67209847-67209866 | MS.gene70517:intron | 20.0% |
!! | AGTTACAACATTATTGAATA+TGG | - | chr3.1:67209335-67209354 | MS.gene70517:CDS | 20.0% |
!! | ATGTATAAGAAGACAATTAT+TGG | + | chr3.1:67208532-67208551 | None:intergenic | 20.0% |
!! | ATTACTCATTGAATTATCAA+AGG | - | chr3.1:67208431-67208450 | MS.gene70517:CDS | 20.0% |
!! | ATTGAATATATATTCTTGCA+AGG | + | chr3.1:67209844-67209863 | None:intergenic | 20.0% |
!! | GATTCAAATTCATTTAACAT+AGG | - | chr3.1:67209395-67209414 | MS.gene70517:CDS | 20.0% |
!! | TTAAAAATAGTTTCTTAGCT+TGG | - | chr3.1:67209488-67209507 | MS.gene70517:CDS | 20.0% |
!! | TTGCAAGAATATATATTCAA+TGG | - | chr3.1:67209843-67209862 | MS.gene70517:intron | 20.0% |
!!! | AAAATTTTTGTGTATGAAGA+GGG | - | chr3.1:67209793-67209812 | MS.gene70517:CDS | 20.0% |
!!! | TAAAATTTTTGTGTATGAAG+AGG | - | chr3.1:67209792-67209811 | MS.gene70517:CDS | 20.0% |
!!! | TTGATAATTCAATGAGTAAT+GGG | + | chr3.1:67208431-67208450 | None:intergenic | 20.0% |
!!! | TTTGATAATTCAATGAGTAA+TGG | + | chr3.1:67208432-67208451 | None:intergenic | 20.0% |
! | AAATATTGTATTTGTCCAAG+TGG | - | chr3.1:67210520-67210539 | MS.gene70517:intron | 25.0% |
! | AACAAAATTTCCTTAAGCTT+GGG | + | chr3.1:67210688-67210707 | None:intergenic | 25.0% |
! | AACATTAATTACCATTAGCT+AGG | + | chr3.1:67208576-67208595 | None:intergenic | 25.0% |
! | AACATTATTGAATATGGAGT+TGG | - | chr3.1:67209341-67209360 | MS.gene70517:CDS | 25.0% |
! | AATATTGTATTTGTCCAAGT+GGG | - | chr3.1:67210521-67210540 | MS.gene70517:intron | 25.0% |
! | ACAAATGTGAGAAAGATAAA+TGG | - | chr3.1:67210928-67210947 | MS.gene70517:intron | 25.0% |
! | ATATTCATTCTCTTCTGTTA+AGG | + | chr3.1:67211355-67211374 | None:intergenic | 25.0% |
! | ATCTCAACCACATATTAAAT+AGG | + | chr3.1:67209627-67209646 | None:intergenic | 25.0% |
! | ATTGAAGCCTATTTAATATG+TGG | - | chr3.1:67209617-67209636 | MS.gene70517:CDS | 25.0% |
! | CAAGAATATATATTCAATGG+AGG | - | chr3.1:67209846-67209865 | MS.gene70517:intron | 25.0% |
! | CAATCCAAAAAATAATGATC+AGG | - | chr3.1:67211323-67211342 | MS.gene70517:CDS | 25.0% |
! | CATACTCACACTATAATTAA+CGG | + | chr3.1:67210139-67210158 | None:intergenic | 25.0% |
! | GAAATATATAAGATTGCAAG+AGG | - | chr3.1:67210723-67210742 | MS.gene70517:intron | 25.0% |
! | GAGGTTAAAACTCTTAAATA+TGG | + | chr3.1:67209654-67209673 | None:intergenic | 25.0% |
! | GGGAATATTTATCAACTTAT+TGG | - | chr3.1:67209867-67209886 | MS.gene70517:intron | 25.0% |
! | TAAATTCAATTCTCCATTGT+AGG | + | chr3.1:67208667-67208686 | None:intergenic | 25.0% |
! | TACAATGGAGAATTGAATTT+AGG | - | chr3.1:67208666-67208685 | MS.gene70517:intron | 25.0% |
! | TATCACACAAATATGCATAT+TGG | - | chr3.1:67210043-67210062 | MS.gene70517:CDS | 25.0% |
! | TCCTTCAAAAAAAATGTAAG+AGG | + | chr3.1:67209673-67209692 | None:intergenic | 25.0% |
! | TGAAATACATCATATCTCTT+AGG | + | chr3.1:67210790-67210809 | None:intergenic | 25.0% |
! | TGAGAACACAAATGTTAAAT+GGG | + | chr3.1:67209520-67209539 | None:intergenic | 25.0% |
! | TGATAATTCAATGAGTAATG+GGG | + | chr3.1:67208430-67208449 | None:intergenic | 25.0% |
! | TTAAGATGAACAATTAGTTC+TGG | + | chr3.1:67211399-67211418 | None:intergenic | 25.0% |
! | TTATTCATTCTATATGGCTT+AGG | - | chr3.1:67210815-67210834 | MS.gene70517:intron | 25.0% |
!! | AAGCTTAAGGAAATTTTGTT+GGG | - | chr3.1:67210688-67210707 | MS.gene70517:intron | 25.0% |
!! | TCATGGTATGAAATATTTTC+TGG | + | chr3.1:67210484-67210503 | None:intergenic | 25.0% |
!! | TTCGTTAAGAGTTGATTATA+TGG | + | chr3.1:67211020-67211039 | None:intergenic | 25.0% |
!! | TTTTAGTGATGTTCTTGATT+GGG | - | chr3.1:67210627-67210646 | MS.gene70517:intron | 25.0% |
!!! | ACCTCTTACATTTTTTTTGA+AGG | - | chr3.1:67209669-67209688 | MS.gene70517:CDS | 25.0% |
!!! | ATGAAAATGGTTTTGTGTAT+AGG | - | chr3.1:67210180-67210199 | MS.gene70517:CDS | 25.0% |
!!! | CTCTTAATTTTGATTCATTC+TGG | - | chr3.1:67211161-67211180 | MS.gene70517:CDS | 25.0% |
!!! | TGAAAATGGTTTTGTGTATA+GGG | - | chr3.1:67210181-67210200 | MS.gene70517:CDS | 25.0% |
!!! | TGAACCTGATCATTATTTTT+TGG | + | chr3.1:67211330-67211349 | None:intergenic | 25.0% |
AAAGATAGCTCAAAAGATGA+AGG | + | chr3.1:67209588-67209607 | None:intergenic | 30.0% | |
AAATCCACCTAATTGATATC+AGG | - | chr3.1:67209004-67209023 | MS.gene70517:intron | 30.0% | |
AATACATCATATCTCTTAGG+AGG | + | chr3.1:67210787-67210806 | None:intergenic | 30.0% | |
AATGCAAGGAGATAGAAATT+TGG | - | chr3.1:67208713-67208732 | MS.gene70517:intron | 30.0% | |
ACTTTGCAATGCAAATATCT+CGG | - | chr3.1:67210255-67210274 | MS.gene70517:intron | 30.0% | |
AGGATCATAACAACACTAAA+TGG | + | chr3.1:67209949-67209968 | None:intergenic | 30.0% | |
ATACACCTTGTATGATGAAA+GGG | + | chr3.1:67208482-67208501 | None:intergenic | 30.0% | |
ATATAGGAGTTACCACTTAA+TGG | - | chr3.1:67209759-67209778 | MS.gene70517:CDS | 30.0% | |
ATCATTTCCTGAAATCAACT+TGG | - | chr3.1:67210303-67210322 | MS.gene70517:intron | 30.0% | |
CAACAAAATTTCCTTAAGCT+TGG | + | chr3.1:67210689-67210708 | None:intergenic | 30.0% | |
CAATCAAGAACATCACTAAA+AGG | + | chr3.1:67210628-67210647 | None:intergenic | 30.0% | |
CTTGAAAGGTAAGTAATACA+TGG | + | chr3.1:67211495-67211514 | None:intergenic | 30.0% | |
GAACTATATCATGAGAGATA+AGG | - | chr3.1:67208893-67208912 | MS.gene70517:intron | 30.0% | |
GCATATTGGAATAGAAGTTA+TGG | - | chr3.1:67210057-67210076 | MS.gene70517:CDS | 30.0% | |
GTATTAGAGTTTACGTTCAA+AGG | - | chr3.1:67209053-67209072 | MS.gene70517:intron | 30.0% | |
GTGAGAACACAAATGTTAAA+TGG | + | chr3.1:67209521-67209540 | None:intergenic | 30.0% | |
TAAATAGCTTCTCCATTAAG+TGG | + | chr3.1:67209774-67209793 | None:intergenic | 30.0% | |
TAAATTGCCTCAACAATTCT+TGG | + | chr3.1:67210562-67210581 | None:intergenic | 30.0% | |
TAATACAACTTCGATATTGC+AGG | + | chr3.1:67209039-67209058 | None:intergenic | 30.0% | |
TACTCATCTTCATTGTTTCA+TGG | + | chr3.1:67210501-67210520 | None:intergenic | 30.0% | |
TATACACCTTGTATGATGAA+AGG | + | chr3.1:67208483-67208502 | None:intergenic | 30.0% | |
TATCTTTGTTCTTCCAATGT+TGG | + | chr3.1:67210435-67210454 | None:intergenic | 30.0% | |
TGAAATATATGTCTTTAGCC+TGG | + | chr3.1:67209290-67209309 | None:intergenic | 30.0% | |
TTCACTTTATCTAACAACCT+GGG | - | chr3.1:67209306-67209325 | MS.gene70517:CDS | 30.0% | |
TTTCACTTTATCTAACAACC+TGG | - | chr3.1:67209305-67209324 | MS.gene70517:CDS | 30.0% | |
! | ACTTTGCTATGTTACTTAAG+TGG | + | chr3.1:67208958-67208977 | None:intergenic | 30.0% |
! | CAAGCTTAAGGAAATTTTGT+TGG | - | chr3.1:67210687-67210706 | MS.gene70517:intron | 30.0% |
! | CATCTTTTGAGCTATCTTTT+GGG | - | chr3.1:67209589-67209608 | MS.gene70517:CDS | 30.0% |
! | CTTTTAGTGATGTTCTTGAT+TGG | - | chr3.1:67210626-67210645 | MS.gene70517:intron | 30.0% |
! | TCATCTTTTGAGCTATCTTT+TGG | - | chr3.1:67209588-67209607 | MS.gene70517:CDS | 30.0% |
! | TGTTCTTACGGTAATTCTTT+TGG | + | chr3.1:67209155-67209174 | None:intergenic | 30.0% |
!!! | GTTGTTGATTTTGTACATGT+AGG | - | chr3.1:67208614-67208633 | MS.gene70517:intron | 30.0% |
AAATCTAGTCGTGCAAATGA+TGG | + | chr3.1:67211219-67211238 | None:intergenic | 35.0% | |
AACATGGAACAGAACAATTC+TGG | - | chr3.1:67210363-67210382 | MS.gene70517:intron | 35.0% | |
AACTTTCCAGGCTAAAGTAT+GGG | - | chr3.1:67211547-67211566 | MS.gene70517:CDS | 35.0% | |
AAGTAGACATGAGCTTCATT+TGG | + | chr3.1:67209922-67209941 | None:intergenic | 35.0% | |
AATAGAGCATGACATGTAAG+AGG | + | chr3.1:67209704-67209723 | None:intergenic | 35.0% | |
AGAAATTTGGAGAAGGTTGA+AGG | - | chr3.1:67208726-67208745 | MS.gene70517:intron | 35.0% | |
AGAATTGTTCTGTTCCATGT+TGG | + | chr3.1:67210364-67210383 | None:intergenic | 35.0% | |
AGGAGATAGAAATTTGGAGA+AGG | - | chr3.1:67208719-67208738 | MS.gene70517:intron | 35.0% | |
AGGTCATGAAACACAAAAGT+TGG | + | chr3.1:67211434-67211453 | None:intergenic | 35.0% | |
ATAGATAGATGCGTACACTT+AGG | + | chr3.1:67211099-67211118 | None:intergenic | 35.0% | |
ATCCTACCTATGAAAAGCAA+AGG | + | chr3.1:67208868-67208887 | None:intergenic | 35.0% | |
ATCTACCCTTTCATCATACA+AGG | - | chr3.1:67208474-67208493 | MS.gene70517:CDS | 35.0% | |
ATGACTAGTACCAACAGTAT+GGG | + | chr3.1:67211468-67211487 | None:intergenic | 35.0% | |
ATGTTGTAACTTCTAATCCC+AGG | + | chr3.1:67209326-67209345 | None:intergenic | 35.0% | |
CAACTCTTAACGAATTCTTC+CGG | - | chr3.1:67211026-67211045 | MS.gene70517:intron | 35.0% | |
CATGCTTTCTTGTCATGATT+GGG | - | chr3.1:67210092-67210111 | MS.gene70517:CDS | 35.0% | |
CCTATAAGAAGATCAATGCA+AGG | - | chr3.1:67208699-67208718 | MS.gene70517:intron | 35.0% | |
CGATTCTCCTGATATCAATT+AGG | + | chr3.1:67209014-67209033 | None:intergenic | 35.0% | |
GAGAATAAGGTGATAAGCAT+CGG | + | chr3.1:67211271-67211290 | None:intergenic | 35.0% | |
GATTGTAAACAATCAACGCA+TGG | + | chr3.1:67211308-67211327 | None:intergenic | 35.0% | |
GGAAATGATGCATCTTTCTT+TGG | + | chr3.1:67210292-67210311 | None:intergenic | 35.0% | |
TAAAGTTAGCTCACAAGATG+AGG | + | chr3.1:67209371-67209390 | None:intergenic | 35.0% | |
TAGTGAAATTCCCAAGCTTA+AGG | - | chr3.1:67210675-67210694 | MS.gene70517:intron | 35.0% | |
TATAAGACAATGGCCTACAA+TGG | - | chr3.1:67208651-67208670 | MS.gene70517:intron | 35.0% | |
TATGACTAGTACCAACAGTA+TGG | + | chr3.1:67211469-67211488 | None:intergenic | 35.0% | |
TCATGCTTTCTTGTCATGAT+TGG | - | chr3.1:67210091-67210110 | MS.gene70517:CDS | 35.0% | |
TCATGTATGACGTGAAACTT+GGG | + | chr3.1:67209459-67209478 | None:intergenic | 35.0% | |
TCTCATGATTATGTTCCACA+AGG | - | chr3.1:67208825-67208844 | MS.gene70517:intron | 35.0% | |
TGAGGGAAGATATAAGACAA+TGG | - | chr3.1:67208641-67208660 | MS.gene70517:intron | 35.0% | |
TTCATGTATGACGTGAAACT+TGG | + | chr3.1:67209460-67209479 | None:intergenic | 35.0% | |
TTCATTCTATATGGCTTAGG+AGG | - | chr3.1:67210818-67210837 | MS.gene70517:intron | 35.0% | |
TTCCAATGTTGGAAAAGCAA+TGG | + | chr3.1:67210424-67210443 | None:intergenic | 35.0% | |
TTCTCCTGATATCAATTAGG+TGG | + | chr3.1:67209011-67209030 | None:intergenic | 35.0% | |
! | AATTTTGTTGGGTATCTCTG+AGG | - | chr3.1:67210699-67210718 | MS.gene70517:intron | 35.0% |
! | CATGACAAGAAAGCATGAAA+TGG | + | chr3.1:67210089-67210108 | None:intergenic | 35.0% |
! | CCTTGCATTGATCTTCTTAT+AGG | + | chr3.1:67208702-67208721 | None:intergenic | 35.0% |
! | TATTCGTGACAAAGCTGTTT+TGG | - | chr3.1:67209990-67210009 | MS.gene70517:CDS | 35.0% |
! | TGACTGACTCTTTGTTCTTA+CGG | + | chr3.1:67209167-67209186 | None:intergenic | 35.0% |
!! | ATTCGTGACAAAGCTGTTTT+GGG | - | chr3.1:67209991-67210010 | MS.gene70517:CDS | 35.0% |
!! | CTCAGAGGTTTTTGAGAATA+AGG | + | chr3.1:67211284-67211303 | None:intergenic | 35.0% |
!! | GAAATGCCTTTGCTTTTCAT+AGG | - | chr3.1:67208859-67208878 | MS.gene70517:intron | 35.0% |
!! | GTTGATTTTGTACATGTAGG+AGG | - | chr3.1:67208617-67208636 | MS.gene70517:intron | 35.0% |
!!! | TTCTTCTGGTTTTGCTTGAA+AGG | + | chr3.1:67211509-67211528 | None:intergenic | 35.0% |
AGCTCAATCACTTGGTTATG+AGG | + | chr3.1:67209551-67209570 | None:intergenic | 40.0% | |
ATTGTATTTGTCCAAGTGGG+TGG | - | chr3.1:67210524-67210543 | MS.gene70517:intron | 40.0% | |
CAACTTTCCAGGCTAAAGTA+TGG | - | chr3.1:67211546-67211565 | MS.gene70517:CDS | 40.0% | |
CAAGGACCATAGTGAAAAAG+AGG | + | chr3.1:67209826-67209845 | None:intergenic | 40.0% | |
CAGTATGGGTACAATTGACA+AGG | + | chr3.1:67211454-67211473 | None:intergenic | 40.0% | |
GAAACAACAGGTTTACTTGG+TGG | - | chr3.1:67210334-67210353 | MS.gene70517:intron | 40.0% | |
GGAAAGTTGTTATAGCAGGA+AGG | + | chr3.1:67211535-67211554 | None:intergenic | 40.0% | |
GGAGAAACAACAGGTTTACT+TGG | - | chr3.1:67210331-67210350 | MS.gene70517:intron | 40.0% | |
GTCAATTGTACCCATACTGT+TGG | - | chr3.1:67211455-67211474 | MS.gene70517:intron | 40.0% | |
TAATCATGAGAGTCCTCAAG+AGG | + | chr3.1:67208816-67208835 | None:intergenic | 40.0% | |
TCCTGCTATAACAACTTTCC+AGG | - | chr3.1:67211535-67211554 | MS.gene70517:CDS | 40.0% | |
TCTTAACGAATTCTTCCGGA+AGG | - | chr3.1:67211030-67211049 | MS.gene70517:intron | 40.0% | |
TTCTTTGCAGGACAAATGCA+TGG | - | chr3.1:67210388-67210407 | MS.gene70517:intron | 40.0% | |
TTGTACATGTAGGAGGATGA+GGG | - | chr3.1:67208624-67208643 | MS.gene70517:intron | 40.0% | |
TTGTATTTGTCCAAGTGGGT+GGG | - | chr3.1:67210525-67210544 | MS.gene70517:intron | 40.0% | |
TTTCTGTAGATGTCTCCTTG+TGG | + | chr3.1:67208843-67208862 | None:intergenic | 40.0% | |
TTTGCACGACTAGATTTAGC+TGG | - | chr3.1:67211222-67211241 | MS.gene70517:CDS | 40.0% | |
TTTGTACATGTAGGAGGATG+AGG | - | chr3.1:67208623-67208642 | MS.gene70517:intron | 40.0% | |
! | AAAAAGGCTGCCTTTAGGTT+TGG | + | chr3.1:67209258-67209277 | None:intergenic | 40.0% |
! | AAACCTAAAGGCAGCCTTTT+TGG | - | chr3.1:67209257-67209276 | MS.gene70517:CDS | 40.0% |
! | ACAGCTTTGTCACGAATAAC+TGG | + | chr3.1:67209988-67210007 | None:intergenic | 40.0% |
! | ATTCAATGAGTAATGGGGTG+TGG | + | chr3.1:67208425-67208444 | None:intergenic | 40.0% |
! | CAGCTTTGTCACGAATAACT+GGG | + | chr3.1:67209987-67210006 | None:intergenic | 40.0% |
! | CCTGAAATCAACTTGGTAAC+AGG | - | chr3.1:67210310-67210329 | MS.gene70517:intron | 40.0% |
! | GTTTTGTGTATAGGGACCAA+GGG | - | chr3.1:67210189-67210208 | MS.gene70517:CDS | 40.0% |
! | TTGGTAACAGGAGAAACAAC+AGG | - | chr3.1:67210322-67210341 | MS.gene70517:intron | 40.0% |
! | TTTTGTGCACACCTAGCTAA+TGG | - | chr3.1:67208562-67208581 | MS.gene70517:CDS | 40.0% |
!! | ACAATTCTGGCTTTCTTTGC+AGG | - | chr3.1:67210376-67210395 | MS.gene70517:intron | 40.0% |
!! | ATAAGCATCGGATGTGTGAA+AGG | + | chr3.1:67211259-67211278 | None:intergenic | 40.0% |
!! | CCTGTTACCAAGTTGATTTC+AGG | + | chr3.1:67210313-67210332 | None:intergenic | 40.0% |
!! | GAACCTCCTCTTTTTCACTA+TGG | - | chr3.1:67209817-67209836 | MS.gene70517:intron | 40.0% |
!! | GACCATTGCTTTTCCAACAT+TGG | - | chr3.1:67210419-67210438 | MS.gene70517:intron | 40.0% |
!! | TAAGCATCGGATGTGTGAAA+GGG | + | chr3.1:67211258-67211277 | None:intergenic | 40.0% |
!! | TGCCTTTGCTTTTCATAGGT+AGG | - | chr3.1:67208863-67208882 | MS.gene70517:intron | 40.0% |
!!! | GCTGTTTTGGGAAGAACTAT+TGG | - | chr3.1:67210003-67210022 | MS.gene70517:CDS | 40.0% |
AAGCCAAAAAGGCTGCCTTT+AGG | + | chr3.1:67209263-67209282 | None:intergenic | 45.0% | |
AAGGGCAACATGGTATGTGA+AGG | - | chr3.1:67210207-67210226 | MS.gene70517:CDS | 45.0% | |
ACCAAGTGATTGAGCTCAAC+TGG | - | chr3.1:67209555-67209574 | MS.gene70517:CDS | 45.0% | |
ACCAGTTGAGCTCAATCACT+TGG | + | chr3.1:67209559-67209578 | None:intergenic | 45.0% | |
AGCCTGGTTGAAAGCCAAAA+AGG | + | chr3.1:67209274-67209293 | None:intergenic | 45.0% | |
ATGGCACACTCTCTTACATC+AGG | + | chr3.1:67211590-67211609 | None:intergenic | 45.0% | |
CCTATCTGTGCCAAACCTAA+AGG | - | chr3.1:67209245-67209264 | MS.gene70517:CDS | 45.0% | |
CGAATTCTTCCGGAAGGAAA+TGG | - | chr3.1:67211036-67211055 | MS.gene70517:intron | 45.0% | |
CTGGGTGAAAGAGATGTTCA+AGG | + | chr3.1:67209969-67209988 | None:intergenic | 45.0% | |
GAAGGAAATGGATGCTGCAA+TGG | - | chr3.1:67211048-67211067 | MS.gene70517:intron | 45.0% | |
GCCTGGAAAGTTGTTATAGC+AGG | + | chr3.1:67211539-67211558 | None:intergenic | 45.0% | |
GGACCATAGTGAAAAAGAGG+AGG | + | chr3.1:67209823-67209842 | None:intergenic | 45.0% | |
GGCAAGTCCAAGAATTGTTG+AGG | - | chr3.1:67210552-67210571 | MS.gene70517:intron | 45.0% | |
TAGCAGGAAGGATCTTCTTC+TGG | + | chr3.1:67211523-67211542 | None:intergenic | 45.0% | |
TCAAGCCCGTTTCAATGCTT+GGG | + | chr3.1:67209219-67209238 | None:intergenic | 45.0% | |
TTAGGTTTGGCACAGATAGG+TGG | + | chr3.1:67209245-67209264 | None:intergenic | 45.0% | |
TTCACATACCATGTTGCCCT+TGG | + | chr3.1:67210208-67210227 | None:intergenic | 45.0% | |
TTCCAGGCTAAAGTATGGGA+CGG | - | chr3.1:67211551-67211570 | MS.gene70517:CDS | 45.0% | |
TTGCAGCATCCATTTCCTTC+CGG | + | chr3.1:67211048-67211067 | None:intergenic | 45.0% | |
TTTGGCACATCTTGTGCTAG+AGG | + | chr3.1:67209137-67209156 | None:intergenic | 45.0% | |
! | AATGCTTGGGCATCGCTTAA+TGG | + | chr3.1:67209206-67209225 | None:intergenic | 45.0% |
! | CCTTTAGGTTTGGCACAGAT+AGG | + | chr3.1:67209248-67209267 | None:intergenic | 45.0% |
! | TACTTGGTGGCTATCCAACA+TGG | - | chr3.1:67210347-67210366 | MS.gene70517:intron | 45.0% |
!! | AGTCGTGCAAATGATGGACA+GGG | + | chr3.1:67211213-67211232 | None:intergenic | 45.0% |
!! | GGTGTCATTGGTTCTCAACA+AGG | + | chr3.1:67208787-67208806 | None:intergenic | 45.0% |
!! | GGTTTTGTGTATAGGGACCA+AGG | - | chr3.1:67210188-67210207 | MS.gene70517:CDS | 45.0% |
!! | TAGTCGTGCAAATGATGGAC+AGG | + | chr3.1:67211214-67211233 | None:intergenic | 45.0% |
!!! | AGCCTTTTTGGCTTTCAACC+AGG | - | chr3.1:67209269-67209288 | MS.gene70517:CDS | 45.0% |
!!! | GCTAGAGGAGTTGCTTTTTG+TGG | + | chr3.1:67209122-67209141 | None:intergenic | 45.0% |
AGAGTCCTCAAGAGGCAGTA+CGG | + | chr3.1:67208808-67208827 | None:intergenic | 50.0% | |
CAATCAACGCATGGTCTCAG+AGG | + | chr3.1:67211299-67211318 | None:intergenic | 50.0% | |
CTCAAGCCCGTTTCAATGCT+TGG | + | chr3.1:67209220-67209239 | None:intergenic | 50.0% | |
GCACACTCTCTTACATCAGG+TGG | + | chr3.1:67211587-67211606 | None:intergenic | 50.0% | |
GCACGACTAGATTTAGCTGG+CGG | - | chr3.1:67211225-67211244 | MS.gene70517:CDS | 50.0% | |
GCGCTAACTCAATCGTTAGG+TGG | + | chr3.1:67208936-67208955 | None:intergenic | 50.0% | |
GCTAAAGTATGGGACGGTCA+AGG | - | chr3.1:67211557-67211576 | MS.gene70517:CDS | 50.0% | |
GGGTGTGGATGCATACATCT+TGG | + | chr3.1:67208410-67208429 | None:intergenic | 50.0% | |
GTGGCGCTAACTCAATCGTT+AGG | + | chr3.1:67208939-67208958 | None:intergenic | 50.0% | |
TATAGGGACCAAGGGCAACA+TGG | - | chr3.1:67210197-67210216 | MS.gene70517:CDS | 50.0% | |
!! | AAGAGGCAGTACGGTGTCAT+TGG | + | chr3.1:67208799-67208818 | None:intergenic | 50.0% |
!! | CGATGCCCAAGCATTGAAAC+GGG | - | chr3.1:67209211-67209230 | MS.gene70517:intron | 50.0% |
!! | GCGATGCCCAAGCATTGAAA+CGG | - | chr3.1:67209210-67209229 | MS.gene70517:intron | 50.0% |
!! | GTCGTGCAAATGATGGACAG+GGG | + | chr3.1:67211212-67211231 | None:intergenic | 50.0% |
GACCGTCCCATACTTTAGCC+TGG | + | chr3.1:67211556-67211575 | None:intergenic | 55.0% | |
GGACAGGGGATAGCATCGTA+CGG | + | chr3.1:67211198-67211217 | None:intergenic | 55.0% | |
TGACACCGTACTGCCTCTTG+AGG | - | chr3.1:67208800-67208819 | MS.gene70517:intron | 55.0% | |
TTGTCCAAGTGGGTGGGAAG+TGG | - | chr3.1:67210531-67210550 | MS.gene70517:intron | 55.0% | |
! | CTTGCCACTTCCCACCCACT+TGG | + | chr3.1:67210538-67210557 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 67208399 | 67211625 | 67208399 | ID=MS.gene70517 |
chr3.1 | mRNA | 67208399 | 67211625 | 67208399 | ID=MS.gene70517.t1;Parent=MS.gene70517 |
chr3.1 | exon | 67211527 | 67211625 | 67211527 | ID=MS.gene70517.t1.exon1;Parent=MS.gene70517.t1 |
chr3.1 | CDS | 67211527 | 67211625 | 67211527 | ID=cds.MS.gene70517.t1;Parent=MS.gene70517.t1 |
chr3.1 | exon | 67211144 | 67211388 | 67211144 | ID=MS.gene70517.t1.exon2;Parent=MS.gene70517.t1 |
chr3.1 | CDS | 67211144 | 67211388 | 67211144 | ID=cds.MS.gene70517.t1;Parent=MS.gene70517.t1 |
chr3.1 | exon | 67209911 | 67210259 | 67209911 | ID=MS.gene70517.t1.exon3;Parent=MS.gene70517.t1 |
chr3.1 | CDS | 67209911 | 67210259 | 67209911 | ID=cds.MS.gene70517.t1;Parent=MS.gene70517.t1 |
chr3.1 | exon | 67209223 | 67209822 | 67209223 | ID=MS.gene70517.t1.exon4;Parent=MS.gene70517.t1 |
chr3.1 | CDS | 67209223 | 67209822 | 67209223 | ID=cds.MS.gene70517.t1;Parent=MS.gene70517.t1 |
chr3.1 | exon | 67208922 | 67208972 | 67208922 | ID=MS.gene70517.t1.exon5;Parent=MS.gene70517.t1 |
chr3.1 | CDS | 67208922 | 67208972 | 67208922 | ID=cds.MS.gene70517.t1;Parent=MS.gene70517.t1 |
chr3.1 | exon | 67208399 | 67208596 | 67208399 | ID=MS.gene70517.t1.exon6;Parent=MS.gene70517.t1 |
chr3.1 | CDS | 67208399 | 67208596 | 67208399 | ID=cds.MS.gene70517.t1;Parent=MS.gene70517.t1 |
Gene Sequence |
Protein sequence |