AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068605

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068605.t1 MTR_5g031480 98.168 382 5 1 1 380 1 382 0.0 776
MS.gene068605.t1 MTR_5g049790 93.421 380 11 1 1 380 39 404 0.0 737
MS.gene068605.t1 MTR_5g031480 97.879 330 5 1 1 328 1 330 0.0 672
MS.gene068605.t1 MTR_5g031480 97.872 329 5 1 1 327 1 329 0.0 672
MS.gene068605.t1 MTR_5g049790 98.246 285 5 0 1 285 39 323 0.0 591
MS.gene068605.t1 MTR_5g049790 92.715 302 5 1 1 285 39 340 0.0 581
MS.gene068605.t1 MTR_7g085840 41.333 300 163 7 88 380 1 294 5.00e-73 231
MS.gene068605.t1 MTR_7g103260 35.759 316 189 6 72 378 52 362 1.97e-68 221
MS.gene068605.t1 MTR_7g103270 36.218 312 185 6 72 374 53 359 1.16e-65 214
MS.gene068605.t1 MTR_4g100730 34.278 353 213 9 40 378 154 501 6.86e-65 216
MS.gene068605.t1 MTR_3g106690 39.145 304 166 7 84 374 55 352 3.22e-64 210
MS.gene068605.t1 MTR_1g061760 34.451 328 202 6 62 380 128 451 4.24e-64 212
MS.gene068605.t1 MTR_4g115530 33.540 322 194 6 72 378 39 355 5.87e-63 207
MS.gene068605.t1 MTR_4g115540 34.154 325 192 7 72 380 273 591 1.42e-62 211
MS.gene068605.t1 MTR_1g090733 38.188 309 178 7 74 375 208 510 3.03e-61 206
MS.gene068605.t1 MTR_1g006600 34.921 315 188 9 71 374 240 548 3.77e-60 204
MS.gene068605.t1 MTR_3g110200 32.698 367 220 9 32 380 201 558 5.00e-60 204
MS.gene068605.t1 MTR_4g115530 33.660 306 183 6 88 378 1 301 3.01e-59 196
MS.gene068605.t1 MTR_7g103150 35.599 309 182 9 66 363 133 435 1.47e-58 197
MS.gene068605.t1 MTR_3g097310 33.227 313 193 6 72 374 146 452 1.44e-57 195
MS.gene068605.t1 MTR_3g110198 34.663 326 196 9 66 380 242 561 1.48e-57 197
MS.gene068605.t1 MTR_4g115460 34.675 323 191 9 72 380 113 429 9.88e-56 190
MS.gene068605.t1 MTR_3g081240 34.385 317 192 6 72 378 101 411 1.18e-55 189
MS.gene068605.t1 MTR_3g080690 33.439 314 191 7 72 374 99 405 4.11e-54 185
MS.gene068605.t1 MTR_8g102840 33.333 315 194 7 71 374 262 571 3.00e-52 184
MS.gene068605.t1 MTR_4g115540 32.342 269 160 7 72 324 273 535 1.46e-41 153
MS.gene068605.t1 MTR_8g102840 32.576 264 162 7 71 323 262 520 8.14e-37 140
MS.gene068605.t1 MTR_4g057500 27.640 322 190 10 90 378 105 416 1.18e-31 125
MS.gene068605.t1 MTR_2g084245 26.380 326 195 8 87 378 84 398 1.87e-29 118
MS.gene068605.t1 MTR_8g096140 29.904 311 166 12 91 365 49 343 1.34e-27 113
MS.gene068605.t1 MTR_8g096160 29.904 311 166 12 91 365 49 343 1.77e-27 112
MS.gene068605.t1 MTR_5g081290 30.857 175 103 3 88 258 1 161 4.55e-23 97.4
MS.gene068605.t1 MTR_4g084200 27.778 270 164 9 132 378 160 421 6.80e-20 90.9
MS.gene068605.t1 MTR_4g084200 27.778 270 164 9 132 378 160 421 7.32e-20 90.9
MS.gene068605.t1 MTR_4g084200 27.778 270 164 9 132 378 160 421 1.18e-19 90.9
MS.gene068605.t1 MTR_1g029350 25.338 296 186 11 89 356 71 359 6.34e-16 79.3
MS.gene068605.t1 MTR_3g085480 27.311 238 142 8 132 349 116 342 3.33e-15 77.0
MS.gene068605.t1 MTR_8g080490 26.277 274 160 10 132 376 114 374 5.41e-14 73.2
MS.gene068605.t1 MTR_1g097090 26.000 300 169 13 108 371 127 409 1.98e-11 65.5
MS.gene068605.t1 MTR_1g097090 26.000 300 169 13 108 371 127 409 2.30e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068605.t1 AT4G38040 79.412 374 67 3 17 380 19 392 0.0 617
MS.gene068605.t1 AT4G38040 79.412 374 67 2 17 380 19 392 0.0 617
MS.gene068605.t1 AT4G16745 34.604 341 208 6 51 378 159 497 3.53e-68 224
MS.gene068605.t1 AT4G16745 34.604 341 208 6 51 378 159 497 5.82e-68 225
MS.gene068605.t1 AT5G03795 36.250 320 188 8 71 380 169 482 3.81e-66 218
MS.gene068605.t1 AT5G11610 37.695 321 182 8 71 380 199 512 1.78e-64 215
MS.gene068605.t1 AT5G11130 34.226 336 203 7 57 380 114 443 3.18e-62 207
MS.gene068605.t1 AT5G11130 35.082 305 180 7 88 380 1 299 1.96e-60 198
MS.gene068605.t1 AT3G07620 34.940 332 187 9 68 380 104 425 1.41e-59 200
MS.gene068605.t1 AT5G20260 34.568 324 189 8 72 380 117 432 2.06e-59 199
MS.gene068605.t1 AT5G20260 34.951 309 178 8 87 380 27 327 1.54e-58 194
MS.gene068605.t1 AT5G25310 34.985 323 185 6 72 378 131 444 4.31e-58 196
MS.gene068605.t1 AT5G20260 34.740 308 178 8 88 380 1 300 6.50e-58 192
MS.gene068605.t1 AT4G32790 36.246 309 181 8 74 371 249 552 2.07e-57 197
MS.gene068605.t1 AT4G32790 36.246 309 181 8 74 371 249 552 2.07e-57 197
MS.gene068605.t1 AT4G32790 36.246 309 181 8 74 371 249 552 2.07e-57 197
MS.gene068605.t1 AT5G33290 32.727 330 189 7 74 380 146 465 5.28e-56 191
MS.gene068605.t1 AT5G25820 34.337 332 194 11 66 380 296 620 6.21e-54 189
MS.gene068605.t1 AT5G19670 33.546 313 192 7 74 375 263 570 3.04e-53 186
MS.gene068605.t1 AT5G19670 33.546 313 192 7 74 375 263 570 3.04e-53 186
MS.gene068605.t1 AT3G42180 32.012 328 198 7 72 380 114 435 1.39e-52 181
MS.gene068605.t1 AT5G37000 33.654 312 192 9 74 375 208 514 3.87e-52 182
MS.gene068605.t1 AT3G42180 32.372 312 186 7 88 380 1 306 3.23e-51 174
MS.gene068605.t1 AT5G11610 37.600 250 138 8 71 309 199 441 2.98e-44 159
MS.gene068605.t1 AT1G27440 31.410 312 160 13 91 365 45 339 4.96e-30 119
MS.gene068605.t1 AT5G11610 41.538 130 70 2 71 194 199 328 1.19e-27 112
MS.gene068605.t1 AT5G61840 29.904 311 166 12 91 365 48 342 5.41e-27 111
MS.gene068605.t1 AT5G22940 26.923 286 184 6 116 378 136 419 2.92e-25 107
MS.gene068605.t1 AT5G22940 26.923 286 184 6 116 378 165 448 3.27e-25 107
MS.gene068605.t1 AT2G28110 24.458 323 197 10 92 378 94 405 1.89e-23 101
MS.gene068605.t1 AT1G21480 26.224 286 176 10 92 349 89 367 5.11e-20 91.3
MS.gene068605.t1 AT1G21480 26.224 286 176 10 92 349 89 367 1.48e-19 90.5
MS.gene068605.t1 AT5G16890 31.304 230 137 9 168 380 217 442 1.19e-17 84.7
MS.gene068605.t1 AT2G35100 26.625 323 188 14 74 364 64 369 3.03e-17 83.2
MS.gene068605.t1 AT5G44930 29.787 235 141 8 132 352 126 350 5.59e-17 82.0
MS.gene068605.t1 AT5G44930 29.787 235 141 8 132 352 126 350 1.22e-16 81.6
MS.gene068605.t1 AT5G44930 29.787 235 141 8 132 352 126 350 1.22e-16 81.6
MS.gene068605.t1 AT1G67410 27.559 254 162 8 132 368 119 367 1.74e-15 77.8

Find 83 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGGACTAGTCTTGGATTT+TGG 0.099215 5.1:+21656787 MS.gene068605:intron
GGTATTTCTTTCAGAATATT+AGG 0.147218 5.1:+21654681 MS.gene068605:CDS
CAGCCATTTGCTCTTCCAGC+TGG 0.200297 5.1:+21656208 MS.gene068605:CDS
GGAGATGGAGAAGAAGTTTA+AGG 0.232399 5.1:+21654580 MS.gene068605:CDS
TGATATCCAAGTATCCTTAT+TGG 0.235417 5.1:+21656017 MS.gene068605:CDS
TGAGTATTTGAGAGAAAGAT+AGG 0.325682 5.1:-21654192 None:intergenic
CAGTCAAGAATATCATTAAA+AGG 0.337256 5.1:-21658340 None:intergenic
CACACTCTCTTCTCTCTTCG+TGG 0.342097 5.1:+21654128 MS.gene068605:CDS
ATAGCAGATTCTATCCATTA+TGG 0.344223 5.1:+21656990 MS.gene068605:CDS
AGCCATTTGCTCTTCCAGCT+GGG 0.353699 5.1:+21656209 MS.gene068605:CDS
GAGTTATTCTTGCACGTGTA+TGG 0.356811 5.1:+21656835 MS.gene068605:CDS
GATGATGGTGGTGATGAATT+TGG 0.363571 5.1:+21654515 MS.gene068605:CDS
TCTACCACCTTCACAGTAAC+TGG 0.365125 5.1:-21654470 None:intergenic
CCCAGGGTTCTGTTCCAATA+AGG 0.369371 5.1:-21656031 None:intergenic
CGCATCTTATGACACGAAAT+AGG 0.375995 5.1:-21654755 None:intergenic
CAGACACCAAGGAAGCTTAC+TGG 0.379810 5.1:+21654641 MS.gene068605:CDS
GTATTTCTTTCAGAATATTA+GGG 0.382720 5.1:+21654682 MS.gene068605:CDS
ACTGTGAAGGTGGTAGATTC+AGG 0.392685 5.1:+21654476 MS.gene068605:CDS
AGAGAAGAGTGAGGATTGCT+AGG 0.393164 5.1:-21654163 None:intergenic
CAGTAGAGCTACCGGGCATC+TGG 0.408520 5.1:+21656896 MS.gene068605:CDS
TACCAGGTATGCATCCATAA+TGG 0.418374 5.1:-21657004 None:intergenic
TTTGTCACTTGTCATGATGT+TGG 0.423218 5.1:+21656067 MS.gene068605:CDS
TGAAGCCAACATCATAGCTT+GGG 0.425847 5.1:-21656150 None:intergenic
TCGGACTCTTGATCCTGATC+AGG 0.438095 5.1:+21654715 MS.gene068605:CDS
TACTTCCCAGTAAGCTTCCT+TGG 0.443054 5.1:-21654647 None:intergenic
GCCATTTGCTCTTCCAGCTG+GGG 0.445515 5.1:+21656210 MS.gene068605:CDS
TCTGTTCCAATAAGGATACT+TGG 0.446102 5.1:-21656023 None:intergenic
CCATTTGCTCTTCCAGCTGG+GGG 0.447883 5.1:+21656211 MS.gene068605:CDS
CAAGTTGAATTTCGCGGAGA+TGG 0.448649 5.1:+21654565 MS.gene068605:CDS
GAGTGAGGATTGCTAGGGTT+AGG 0.456748 5.1:-21654157 None:intergenic
ATGGAATTCTTCACAAGTAA+TGG 0.456823 5.1:-21656112 None:intergenic
GTGGTTTGCAGGACTAGTCT+TGG 0.457735 5.1:+21656780 MS.gene068605:intron
ATATTAGGGAGAGTCGGTTT+CGG 0.461762 5.1:+21654696 MS.gene068605:CDS
AAAGTCTTGGAATCCCCATC+TGG 0.463244 5.1:-21654614 None:intergenic
ATACTCAACCCCTTCATCTC+AGG 0.463717 5.1:+21654208 MS.gene068605:CDS
GAGAAGAGTGAGGATTGCTA+GGG 0.468132 5.1:-21654162 None:intergenic
GCCCGGTAGCTCTACTGATT+CGG 0.482402 5.1:-21656890 None:intergenic
TCCTTATTGGAACAGAACCC+TGG 0.489602 5.1:+21656030 MS.gene068605:CDS
AGTTATTCTTGCACGTGTAT+GGG 0.490803 5.1:+21656836 MS.gene068605:CDS
CAAATGGCTGCAGCACTTGA+GGG 0.492754 5.1:-21656195 None:intergenic
ATCCATTATGGATGCATACC+TGG 0.496661 5.1:+21657002 MS.gene068605:CDS
AACCGAATCAGTAGAGCTAC+CGG 0.499250 5.1:+21656888 MS.gene068605:CDS
AAAATTTGCTGTTGTACTCA+AGG 0.500391 5.1:+21658366 MS.gene068605:CDS
ATGAAGCCAACATCATAGCT+TGG 0.502805 5.1:-21656151 None:intergenic
GCAAATGGCTGCAGCACTTG+AGG 0.504210 5.1:-21656196 None:intergenic
TATATGCCCTGGTGGATCAC+AGG 0.506862 5.1:+21656953 MS.gene068605:CDS
TGGGGAGCACACTGCTCGAA+TGG 0.507644 5.1:-21656131 None:intergenic
CTTGTCATGATGTTGGTGTA+AGG 0.509172 5.1:+21656074 MS.gene068605:CDS
AGACACCAAGGAAGCTTACT+GGG 0.510018 5.1:+21654642 MS.gene068605:CDS
AGGTTTATATATATCCAGAT+GGG 0.517065 5.1:+21654600 MS.gene068605:CDS
TTAGGTGCCAGTTACTGTGA+AGG 0.521724 5.1:+21654463 MS.gene068605:intron
ACTTCATAATAATTTAGTAA+AGG 0.526267 5.1:+21658450 MS.gene068605:CDS
AAGGTTTATATATATCCAGA+TGG 0.534390 5.1:+21654599 MS.gene068605:CDS
AGTGTTCAAGTTGAATTTCG+CGG 0.535869 5.1:+21654559 MS.gene068605:CDS
CAAAGAAGTGATCAGCACCC+AGG 0.545823 5.1:-21656048 None:intergenic
AGGTGAATGAGAGAAGAGTG+AGG 0.546841 5.1:-21654172 None:intergenic
TTTCTGGTACACCAGATGCC+CGG 0.548769 5.1:-21656907 None:intergenic
CAAGAATATCATTAAAAGGA+AGG 0.551765 5.1:-21658336 None:intergenic
TTCAGAATATTAGGGAGAGT+CGG 0.552683 5.1:+21654690 MS.gene068605:CDS
AAAATTGAGGAGGAAGATGA+TGG 0.562546 5.1:+21654500 MS.gene068605:CDS
TACTGGGAAGTATGCTAGTG+AGG 0.569154 5.1:+21654658 MS.gene068605:CDS
TGCTCCCCAAGCTATGATGT+TGG 0.572141 5.1:+21656145 MS.gene068605:CDS
CACGAAGAGAGAAGAGAGTG+TGG 0.573891 5.1:-21654127 None:intergenic
CATAATTGTACAAAATTACG+TGG 0.574798 5.1:+21655988 MS.gene068605:CDS
TTTGTTTACCTGAGATGAAG+GGG 0.580822 5.1:-21654216 None:intergenic
CCTTATTGGAACAGAACCCT+GGG 0.580833 5.1:+21656031 MS.gene068605:CDS
CTATTAACCTGTGATCCACC+AGG 0.581964 5.1:-21656960 None:intergenic
AAAGAAGTGATCAGCACCCA+GGG 0.583211 5.1:-21656047 None:intergenic
ACTGGGAAGTATGCTAGTGA+GGG 0.592010 5.1:+21654659 MS.gene068605:CDS
GGTTTATATATATCCAGATG+GGG 0.618968 5.1:+21654601 MS.gene068605:CDS
CATTTGCTCTTCCAGCTGGG+GGG 0.620252 5.1:+21656212 MS.gene068605:CDS
TTGTCATGATGTTGGTGTAA+GGG 0.623878 5.1:+21656075 MS.gene068605:CDS
GTGTCATAAGATGCGTGGAA+AGG 0.628562 5.1:+21654763 MS.gene068605:CDS
ATTTCGTGTCATAAGATGCG+TGG 0.629023 5.1:+21654758 MS.gene068605:CDS
AAATTCAACTTGAACACTCG+TGG 0.636153 5.1:-21654554 None:intergenic
GGTGCCAGTTACTGTGAAGG+TGG 0.636651 5.1:+21654466 MS.gene068605:intron
GGGAGAGCAACATCTTTGTG+TGG 0.642873 5.1:-21656175 None:intergenic
GAAGCCAACATCATAGCTTG+GGG 0.652073 5.1:-21656149 None:intergenic
ACCGAATCAGTAGAGCTACC+GGG 0.657582 5.1:+21656889 MS.gene068605:CDS
GTTGGTGTAAGGGCAACAGA+AGG 0.660182 5.1:+21656085 MS.gene068605:CDS
ATTGAGGAGGAAGATGATGG+TGG 0.680092 5.1:+21654503 MS.gene068605:CDS
CTGGGAAGTATGCTAGTGAG+GGG 0.707626 5.1:+21654660 MS.gene068605:CDS
TATTAACCTGTGATCCACCA+GGG 0.723678 5.1:-21656959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAATATCATATAATT+AGG - chr5.1:21657844-21657863 None:intergenic 10.0%
!! CAAAAAATATCATATAATTA+GGG - chr5.1:21657843-21657862 None:intergenic 10.0%
!!! AAATTATTAAATTTTCACAA+TGG - chr5.1:21656759-21656778 None:intergenic 10.0%
!!! AAGTGTATTTTTTTTTTTTT+GGG - chr5.1:21658607-21658626 None:intergenic 10.0%
!!! TAAGTGTATTTTTTTTTTTT+TGG - chr5.1:21658608-21658627 None:intergenic 10.0%
!! AAAAAATAGTTTAAAGACTA+TGG + chr5.1:21658638-21658657 MS.gene068605:intron 15.0%
!! AAAATAGAAAATTTGGAAAT+AGG - chr5.1:21654260-21654279 None:intergenic 15.0%
!! ACTTCATAATAATTTAGTAA+AGG + chr5.1:21658450-21658469 MS.gene068605:CDS 15.0%
!! AGTATAATAATCTAGATAAA+TGG - chr5.1:21656304-21656323 None:intergenic 15.0%
!! ATAAGATAAACAAATATTGT+TGG + chr5.1:21656674-21656693 MS.gene068605:intron 15.0%
!! CTAGATTATTATACTAAAAT+TGG + chr5.1:21656309-21656328 MS.gene068605:intron 15.0%
!!! ACATAAAAAATATTGATTAC+TGG + chr5.1:21654914-21654933 MS.gene068605:intron 15.0%
!!! AGTGTATTTTTTTTTTTTTG+GGG - chr5.1:21658606-21658625 None:intergenic 15.0%
!!! CTAAATTTTGCATTTTTTTA+CGG + chr5.1:21654400-21654419 MS.gene068605:intron 15.0%
!!! GTGAAAATTTAATAATTTTG+TGG + chr5.1:21656761-21656780 MS.gene068605:intron 15.0%
!!! TAAGAAGTGTAATTAATATT+AGG + chr5.1:21657879-21657898 MS.gene068605:intron 15.0%
!!! TTTTTAACCTTTTAATTTTG+TGG + chr5.1:21657045-21657064 MS.gene068605:intron 15.0%
!! AAAAAAAAGTAAATCTGAAG+AGG - chr5.1:21656261-21656280 None:intergenic 20.0%
!! AAATATCATATAATTAGGGA+CGG - chr5.1:21657839-21657858 None:intergenic 20.0%
!! AAGGTTAAAAAATATCAGAA+AGG - chr5.1:21657036-21657055 None:intergenic 20.0%
!! AATAATCACTTATTTGTTCA+TGG + chr5.1:21655307-21655326 MS.gene068605:intron 20.0%
!! CTAAGAAACAAAAAACAAAA+GGG - chr5.1:21654447-21654466 None:intergenic 20.0%
!! GTATTTCTTTCAGAATATTA+GGG + chr5.1:21654682-21654701 MS.gene068605:CDS 20.0%
!! TCATCGAAAAATAGAAAATT+TGG - chr5.1:21654267-21654286 None:intergenic 20.0%
!! TCCAAAATGACTTATAATTT+GGG + chr5.1:21657966-21657985 MS.gene068605:intron 20.0%
!!! AGTTTTGGTATATTTTTAGT+GGG - chr5.1:21655632-21655651 None:intergenic 20.0%
!!! CATTTTTTTACGGTTTTTTA+TGG + chr5.1:21654410-21654429 MS.gene068605:intron 20.0%
!!! GGTTTTTTATGGTTTTTTTA+TGG + chr5.1:21654421-21654440 MS.gene068605:intron 20.0%
!!! GTGTATTTTTTTTTTTTTGG+GGG - chr5.1:21658605-21658624 None:intergenic 20.0%
!!! TGTATTTTTTTTTTTTTGGG+GGG - chr5.1:21658604-21658623 None:intergenic 20.0%
!!! TGTTGATATATAATTTGTTC+AGG + chr5.1:21656699-21656718 MS.gene068605:intron 20.0%
! AAATGACTTATAATTTGGGA+TGG + chr5.1:21657970-21657989 MS.gene068605:intron 25.0%
! AAGATATGAAAAATGTTGCT+GGG + chr5.1:21656578-21656597 MS.gene068605:intron 25.0%
! AAGGTTTATATATATCCAGA+TGG + chr5.1:21654599-21654618 MS.gene068605:CDS 25.0%
! AAGTAGTAATTATTACTCCA+AGG - chr5.1:21656547-21656566 None:intergenic 25.0%
! ACTTATTTGAACTTATCTAC+TGG - chr5.1:21657289-21657308 None:intergenic 25.0%
! AGAAAATTTGGAAATAGGTT+GGG - chr5.1:21654255-21654274 None:intergenic 25.0%
! AGAAACAACAAAAAACCAAA+AGG - chr5.1:21654291-21654310 None:intergenic 25.0%
! AGGTAAATTTAACATGACAA+AGG - chr5.1:21657326-21657345 None:intergenic 25.0%
! AGGTTTATATATATCCAGAT+GGG + chr5.1:21654600-21654619 MS.gene068605:CDS 25.0%
! ATAATCTAGATAAATGGAAG+AGG - chr5.1:21656298-21656317 None:intergenic 25.0%
! CAAGAATATCATTAAAAGGA+AGG - chr5.1:21658339-21658358 None:intergenic 25.0%
! CAGTAAATTTACAGCTAAAA+AGG + chr5.1:21655841-21655860 MS.gene068605:intron 25.0%
! CAGTCAAGAATATCATTAAA+AGG - chr5.1:21658343-21658362 None:intergenic 25.0%
! CATAATTGTACAAAATTACG+TGG + chr5.1:21655988-21656007 MS.gene068605:CDS 25.0%
! CCTAAGAAACAAAAAACAAA+AGG - chr5.1:21654448-21654467 None:intergenic 25.0%
! CTCCAAAATGACTTATAATT+TGG + chr5.1:21657965-21657984 MS.gene068605:intron 25.0%
! GAAACAACAAAAAACCAAAA+GGG - chr5.1:21654290-21654309 None:intergenic 25.0%
! GCAAAATTTAGAAATGTGTT+GGG - chr5.1:21654391-21654410 None:intergenic 25.0%
! GGTATTTCTTTCAGAATATT+AGG + chr5.1:21654681-21654700 MS.gene068605:CDS 25.0%
! GTGACATTTAAACTATAACT+TGG + chr5.1:21658169-21658188 MS.gene068605:intron 25.0%
! TAAGCAACCACAAAATTAAA+AGG - chr5.1:21657055-21657074 None:intergenic 25.0%
! TAAGTGATTATTTCCATCTT+AGG - chr5.1:21655299-21655318 None:intergenic 25.0%
! TAGAAAATTTGGAAATAGGT+TGG - chr5.1:21654256-21654275 None:intergenic 25.0%
! TGCAAAATTTAGAAATGTGT+TGG - chr5.1:21654392-21654411 None:intergenic 25.0%
! TTAGTGGAAAATTGTAGTAA+TGG + chr5.1:21655213-21655232 MS.gene068605:intron 25.0%
! TTTAACATTACGAACATTGT+GGG + chr5.1:21656509-21656528 MS.gene068605:intron 25.0%
!! AAAGAAATTAGTGACAGTTT+TGG - chr5.1:21655647-21655666 None:intergenic 25.0%
!! AGCAACATTTTTCATATCTT+GGG - chr5.1:21656578-21656597 None:intergenic 25.0%
!! ATTTCAAAATTTGTTTGACC+TGG + chr5.1:21656486-21656505 MS.gene068605:intron 25.0%
!! CACGTAATTTTGTACAATTA+TGG - chr5.1:21655990-21656009 None:intergenic 25.0%
!! CTTTTAATGATATTCTTGAC+TGG + chr5.1:21658341-21658360 MS.gene068605:CDS 25.0%
!! TCCCAAATTATAAGTCATTT+TGG - chr5.1:21657970-21657989 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+TGG - chr5.1:21657166-21657185 None:intergenic 25.0%
!! TTGGTTCAAATTATGTTTTG+TGG + chr5.1:21656328-21656347 MS.gene068605:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr5.1:21657792-21657811 MS.gene068605:intron 25.0%
!!! AAGTTTTAGAATGTTTAGCT+TGG + chr5.1:21655882-21655901 MS.gene068605:intron 25.0%
!!! ATTTGTTGTATATCGGTTAT+TGG + chr5.1:21657349-21657368 MS.gene068605:intron 25.0%
!!! CAGTTTTGGTATATTTTTAG+TGG - chr5.1:21655633-21655652 None:intergenic 25.0%
!!! CATATTTTTATTCAGGAGTA+GGG - chr5.1:21655127-21655146 None:intergenic 25.0%
!!! CCTTTTGTTTTTTGTTTCTT+AGG + chr5.1:21654445-21654464 MS.gene068605:intron 25.0%
!!! CTTTATTGCTTGGTTTTTAA+TGG + chr5.1:21654813-21654832 MS.gene068605:intron 25.0%
!!! GATTCGTCATATTTTTATTC+AGG - chr5.1:21655134-21655153 None:intergenic 25.0%
!!! TCATATTTTTATTCAGGAGT+AGG - chr5.1:21655128-21655147 None:intergenic 25.0%
!!! TTAATAATTTTGTGGTTTGC+AGG + chr5.1:21656769-21656788 MS.gene068605:intron 25.0%
!!! TTGGTTTTTTGTTGTTTCTT+AGG + chr5.1:21654292-21654311 MS.gene068605:intron 25.0%
AAAGCACAACATTACAAATG+TGG - chr5.1:21654797-21654816 None:intergenic 30.0%
AAGGTTAATCAGTATGGAAA+AGG - chr5.1:21657399-21657418 None:intergenic 30.0%
AATATAGTCAGTCTCATGTT+TGG + chr5.1:21655438-21655457 MS.gene068605:intron 30.0%
AATCAGTATGGAAAAGGATA+GGG - chr5.1:21657393-21657412 None:intergenic 30.0%
AATGTTCGTAATGTTAAACC+AGG - chr5.1:21656507-21656526 None:intergenic 30.0%
ACATGATACTTATTCCTGAA+TGG + chr5.1:21657133-21657152 MS.gene068605:intron 30.0%
AGAAATATTTCAATGCGTCA+TGG + chr5.1:21658497-21658516 MS.gene068605:intron 30.0%
AGAGCACATCTTATAATGTT+TGG + chr5.1:21655470-21655489 MS.gene068605:intron 30.0%
AGTAGCATTTAATGCTTCAT+TGG + chr5.1:21657905-21657924 MS.gene068605:intron 30.0%
ATAGCAGATTCTATCCATTA+TGG + chr5.1:21656990-21657009 MS.gene068605:CDS 30.0%
ATGGAATTCTTCACAAGTAA+TGG - chr5.1:21656115-21656134 None:intergenic 30.0%
ATGTCAAATACCAACTATAG+TGG - chr5.1:21657623-21657642 None:intergenic 30.0%
CAAGATATGAAAAATGTTGC+TGG + chr5.1:21656577-21656596 MS.gene068605:intron 30.0%
CTGTGAGTAAGTTTAGATAA+AGG - chr5.1:21656422-21656441 None:intergenic 30.0%
GGTTTATATATATCCAGATG+GGG + chr5.1:21654601-21654620 MS.gene068605:CDS 30.0%
GTTTAACATTACGAACATTG+TGG + chr5.1:21656508-21656527 MS.gene068605:intron 30.0%
TAATCAGTATGGAAAAGGAT+AGG - chr5.1:21657394-21657413 None:intergenic 30.0%
TACTATAGATATCGTTGCTA+TGG - chr5.1:21655738-21655757 None:intergenic 30.0%
TCACAAAAGGTTAATCAGTA+TGG - chr5.1:21657405-21657424 None:intergenic 30.0%
TGAGTATTTGAGAGAAAGAT+AGG - chr5.1:21654195-21654214 None:intergenic 30.0%
TGATATCCAAGTATCCTTAT+TGG + chr5.1:21656017-21656036 MS.gene068605:CDS 30.0%
TGCTGTAAATATAGCTAAAC+AGG + chr5.1:21655343-21655362 MS.gene068605:intron 30.0%
TGTAGTGCGACTTATAATTT+GGG + chr5.1:21657931-21657950 MS.gene068605:intron 30.0%
TTATTTCCATCTCAGAATCA+GGG - chr5.1:21655788-21655807 None:intergenic 30.0%
TTCTACTTAATACCCTAGTA+GGG - chr5.1:21654961-21654980 None:intergenic 30.0%
TTGTAGTGCGACTTATAATT+TGG + chr5.1:21657930-21657949 MS.gene068605:intron 30.0%
TTGTTCATGGTTTATTACCA+TGG + chr5.1:21655320-21655339 MS.gene068605:intron 30.0%
! ACTTATTCCTGAATGGTTTT+TGG + chr5.1:21657140-21657159 MS.gene068605:intron 30.0%
! AGCATTGTCATTTGTCATAT+AGG - chr5.1:21657102-21657121 None:intergenic 30.0%
! CAGCAACATTTTTCATATCT+TGG - chr5.1:21656579-21656598 None:intergenic 30.0%
! GGTCGAAGTACTTTATTATT+GGG + chr5.1:21658014-21658033 MS.gene068605:intron 30.0%
! GTCATGGTTAAATTTTACTC+TGG + chr5.1:21658513-21658532 MS.gene068605:intron 30.0%
! GTCTTGGGCTTTTTATTAAA+AGG + chr5.1:21655563-21655582 MS.gene068605:intron 30.0%
! TAATGTTGTGCTTTATTGCT+TGG + chr5.1:21654803-21654822 MS.gene068605:intron 30.0%
! TAGTGCTGTAAAATCTTTTC+TGG - chr5.1:21656926-21656945 None:intergenic 30.0%
!! AAAATTTGCTGTTGTACTCA+AGG + chr5.1:21658366-21658385 MS.gene068605:CDS 30.0%
!! ACCTTGCATTTGTTGTATAT+CGG + chr5.1:21657342-21657361 MS.gene068605:intron 30.0%
!! ATTTTGTTTACCTGAGATGA+AGG - chr5.1:21654221-21654240 None:intergenic 30.0%
!! TTAGATTGCAGTTTTGTCTT+GGG + chr5.1:21655548-21655567 MS.gene068605:intron 30.0%
!! TTTAGAATGTTTAGCTTGGA+TGG + chr5.1:21655886-21655905 MS.gene068605:intron 30.0%
!! TTTTGAGGATTTGTTTAAGC+TGG - chr5.1:21658405-21658424 None:intergenic 30.0%
!! TTTTGTTTACCTGAGATGAA+GGG - chr5.1:21654220-21654239 None:intergenic 30.0%
!!! AAACAATACTTTTTCCCACT+AGG + chr5.1:21656634-21656653 MS.gene068605:intron 30.0%
!!! AGGAGTAGGGTTTTAAATAA+AGG - chr5.1:21655114-21655133 None:intergenic 30.0%
!!! TTGTTGTTGATTTTGCTTCA+CGG - chr5.1:21654099-21654118 None:intergenic 30.0%
AAAATTGAGGAGGAAGATGA+TGG + chr5.1:21654500-21654519 MS.gene068605:CDS 35.0%
AAATTCAACTTGAACACTCG+TGG - chr5.1:21654557-21654576 None:intergenic 35.0%
AACATAGCATAGAGGACATT+CGG - chr5.1:21655608-21655627 None:intergenic 35.0%
AAGTATACGTGCAATTCGAT+CGG - chr5.1:21658130-21658149 None:intergenic 35.0%
AATAAAACATTCCCACCTAG+TGG - chr5.1:21656652-21656671 None:intergenic 35.0%
AATCCTCAAAAACAAATCGC+AGG + chr5.1:21658414-21658433 MS.gene068605:CDS 35.0%
AATCTGTGTCACCAAATCTA+AGG + chr5.1:21655150-21655169 MS.gene068605:intron 35.0%
AATTCACACCTTAGAATAGG+CGG - chr5.1:21655670-21655689 None:intergenic 35.0%
ACATGGAAATTGTTATGCTG+TGG + chr5.1:21655070-21655089 MS.gene068605:intron 35.0%
ACCGATATACAACAAATGCA+AGG - chr5.1:21657346-21657365 None:intergenic 35.0%
ACTTAGTCACAATTGTACTG+TGG + chr5.1:21655039-21655058 MS.gene068605:intron 35.0%
AGATTCAGGAAAAATTGAGG+AGG + chr5.1:21654490-21654509 MS.gene068605:CDS 35.0%
AGTTATTCTTGCACGTGTAT+GGG + chr5.1:21656836-21656855 MS.gene068605:CDS 35.0%
ATAAAACATTCCCACCTAGT+GGG - chr5.1:21656651-21656670 None:intergenic 35.0%
ATCAGAAAGGTTTACTTACC+AGG - chr5.1:21657023-21657042 None:intergenic 35.0%
ATCGTTTCACGAAACAATAG+TGG + chr5.1:21657658-21657677 MS.gene068605:intron 35.0%
ATCTGTGTCACCAAATCTAA+GGG + chr5.1:21655151-21655170 MS.gene068605:intron 35.0%
ATGGCTAAGTTTCTACTTCT+AGG + chr5.1:21655905-21655924 MS.gene068605:intron 35.0%
ATTATTTCCATCTTAGGAGC+AGG - chr5.1:21655293-21655312 None:intergenic 35.0%
ATTTCTTTCCGCCTATTCTA+AGG + chr5.1:21655659-21655678 MS.gene068605:intron 35.0%
CAACTATAGTGGCACTATAA+CGG - chr5.1:21657612-21657631 None:intergenic 35.0%
CTGTAAAAATCTTGATGCTG+TGG + chr5.1:21655524-21655543 MS.gene068605:intron 35.0%
CTTCTACTTAATACCCTAGT+AGG - chr5.1:21654962-21654981 None:intergenic 35.0%
GGTAGATTCAGGAAAAATTG+AGG + chr5.1:21654487-21654506 MS.gene068605:CDS 35.0%
TAGCTATATTTACAGCACCA+TGG - chr5.1:21655340-21655359 None:intergenic 35.0%
TATTCTATTCTACCTCGAAG+CGG - chr5.1:21655422-21655441 None:intergenic 35.0%
TCACGATTCTCTGTAAATCA+AGG - chr5.1:21655009-21655028 None:intergenic 35.0%
TCATCACTCTTCAGTATGTT+AGG + chr5.1:21658566-21658585 MS.gene068605:intron 35.0%
TCTACTTAATACCCTAGTAG+GGG - chr5.1:21654960-21654979 None:intergenic 35.0%
TCTCTGTAAATCAAGGATCA+CGG - chr5.1:21655002-21655021 None:intergenic 35.0%
TCTGTTCCAATAAGGATACT+TGG - chr5.1:21656026-21656045 None:intergenic 35.0%
TGCTTATAATAGTGACCAGA+GGG - chr5.1:21657698-21657717 None:intergenic 35.0%
TGGTGTCTGATAAAAAGTCT+TGG - chr5.1:21654630-21654649 None:intergenic 35.0%
TTATTTCCATCTTAGGAGCA+GGG - chr5.1:21655292-21655311 None:intergenic 35.0%
TTCAGAATATTAGGGAGAGT+CGG + chr5.1:21654690-21654709 MS.gene068605:CDS 35.0%
TTGCTTATAATAGTGACCAG+AGG - chr5.1:21657699-21657718 None:intergenic 35.0%
TTGTCATGATGTTGGTGTAA+GGG + chr5.1:21656075-21656094 MS.gene068605:CDS 35.0%
TTTGTTTACCTGAGATGAAG+GGG - chr5.1:21654219-21654238 None:intergenic 35.0%
! AAGATTTAGAATGTCTAGCC+TGG + chr5.1:21655384-21655403 MS.gene068605:intron 35.0%
! AGACTTTTTATCAGACACCA+AGG + chr5.1:21654630-21654649 MS.gene068605:CDS 35.0%
! AGATGTAATGGTTGATGTGA+AGG - chr5.1:21657430-21657449 None:intergenic 35.0%
! CTTCCTTTTTATTGTGCTGA+GGG + chr5.1:21657457-21657476 MS.gene068605:intron 35.0%
! GACTTATAATTTGGGATGGA+CGG + chr5.1:21657974-21657993 MS.gene068605:intron 35.0%
! GGGTCGAAGTACTTTATTAT+TGG + chr5.1:21658013-21658032 MS.gene068605:intron 35.0%
! GTGGGTCTTAATATTTTCCT+TGG + chr5.1:21656527-21656546 MS.gene068605:intron 35.0%
! GTTACAAGAGCACAAGATTT+AGG - chr5.1:21655766-21655785 None:intergenic 35.0%
! GTTATTTCCATCTCAGAATC+AGG - chr5.1:21655789-21655808 None:intergenic 35.0%
! TTCCTTTTTATTGTGCTGAG+GGG + chr5.1:21657458-21657477 MS.gene068605:intron 35.0%
! TTTGTCACTTGTCATGATGT+TGG + chr5.1:21656067-21656086 MS.gene068605:CDS 35.0%
!! AACATGACAAAGGACTAGTT+TGG - chr5.1:21657316-21657335 None:intergenic 35.0%
!! ACTAAGTTTTGTATATGCCC+TGG + chr5.1:21656942-21656961 MS.gene068605:CDS 35.0%
!! AGTGTTCAAGTTGAATTTCG+CGG + chr5.1:21654559-21654578 MS.gene068605:CDS 35.0%
!! CTATTTTTCGATGACCCTTT+TGG + chr5.1:21654273-21654292 MS.gene068605:intron 35.0%
!! CTTAGATTGCAGTTTTGTCT+TGG + chr5.1:21655547-21655566 MS.gene068605:intron 35.0%
!! GTATTTTTGCATCTGGTTAG+TGG + chr5.1:21655197-21655216 MS.gene068605:intron 35.0%
!! GTTCATGATTTGTTACCATG+AGG + chr5.1:21655818-21655837 MS.gene068605:intron 35.0%
!! GTTTCGTGTATTTTTGCATC+TGG + chr5.1:21655190-21655209 MS.gene068605:intron 35.0%
!!! AATACTTTTTCCCACTAGGT+GGG + chr5.1:21656638-21656657 MS.gene068605:intron 35.0%
AAAAACAGATGAGCCTGATC+AGG - chr5.1:21654731-21654750 None:intergenic 40.0%
AACATGGCCAAAAACCATTC+AGG - chr5.1:21657150-21657169 None:intergenic 40.0%
AATGTAGTCAAACTCATGCC+TGG + chr5.1:21655931-21655950 MS.gene068605:intron 40.0%
AATGTCACGCGTGTAACAAT+TGG - chr5.1:21658157-21658176 None:intergenic 40.0%
ACATCCCAAGTTCATCCTTA+AGG - chr5.1:21658243-21658262 None:intergenic 40.0%
ACTCCTAAACTGTGATTCCA+AGG - chr5.1:21657514-21657533 None:intergenic 40.0%
AGTTTAGGAGTCCTTAGCTA+AGG + chr5.1:21657523-21657542 MS.gene068605:intron 40.0%
ATCCATTATGGATGCATACC+TGG + chr5.1:21657002-21657021 MS.gene068605:CDS 40.0%
ATCCCCTCAGCACAATAAAA+AGG - chr5.1:21657463-21657482 None:intergenic 40.0%
ATGAAGCCAACATCATAGCT+TGG - chr5.1:21656154-21656173 None:intergenic 40.0%
ATGTCACGCGTGTAACAATT+GGG - chr5.1:21658156-21658175 None:intergenic 40.0%
ATTTCGTGTCATAAGATGCG+TGG + chr5.1:21654758-21654777 MS.gene068605:CDS 40.0%
CACAATTCACCCCTTAGATT+TGG - chr5.1:21655164-21655183 None:intergenic 40.0%
CACTGTTTCAACCTTAGCTA+AGG - chr5.1:21657537-21657556 None:intergenic 40.0%
CAGAGAATCGTGATCAAATG+CGG + chr5.1:21655016-21655035 MS.gene068605:intron 40.0%
CATCCCAAGTTCATCCTTAA+GGG - chr5.1:21658242-21658261 None:intergenic 40.0%
CCTCAGCACAATAAAAAGGA+AGG - chr5.1:21657459-21657478 None:intergenic 40.0%
CGCAATTCACACCTTAGAAT+AGG - chr5.1:21655673-21655692 None:intergenic 40.0%
CGCATCTTATGACACGAAAT+AGG - chr5.1:21654758-21654777 None:intergenic 40.0%
CTTGTCATGATGTTGGTGTA+AGG + chr5.1:21656074-21656093 MS.gene068605:CDS 40.0%
GAGTTATTCTTGCACGTGTA+TGG + chr5.1:21656835-21656854 MS.gene068605:CDS 40.0%
GCATCAACAAGATTTGCAAC+TGG - chr5.1:21654326-21654345 None:intergenic 40.0%
GCTGTAAATTTACTGCCTCA+TGG - chr5.1:21655836-21655855 None:intergenic 40.0%
GGAAGGATTGCAAGATGTAA+TGG - chr5.1:21657442-21657461 None:intergenic 40.0%
GGAGATGGAGAAGAAGTTTA+AGG + chr5.1:21654580-21654599 MS.gene068605:CDS 40.0%
GGGGGAATGATGTAGAAAAT+AGG + chr5.1:21656230-21656249 MS.gene068605:CDS 40.0%
GTTGCAAATCTTGTTGATGC+AGG + chr5.1:21654326-21654345 MS.gene068605:intron 40.0%
GTTTCGTGTCAATCTTGTTG+TGG + chr5.1:21656395-21656414 MS.gene068605:intron 40.0%
TACCAGGTATGCATCCATAA+TGG - chr5.1:21657007-21657026 None:intergenic 40.0%
TACTGGCATAAACACTTGTG+AGG - chr5.1:21657272-21657291 None:intergenic 40.0%
TAGTAGGGGAACAATGCATA+AGG - chr5.1:21654946-21654965 None:intergenic 40.0%
TATGCATTGTTCCCCTACTA+GGG + chr5.1:21654946-21654965 MS.gene068605:intron 40.0%
TATTAACCTGTGATCCACCA+GGG - chr5.1:21656962-21656981 None:intergenic 40.0%
TCATGCCTGGATATTATGCA+GGG + chr5.1:21655944-21655963 MS.gene068605:intron 40.0%
TCTGTGTCACCAAATCTAAG+GGG + chr5.1:21655152-21655171 MS.gene068605:intron 40.0%
TGAAGCCAACATCATAGCTT+GGG - chr5.1:21656153-21656172 None:intergenic 40.0%
TGATGTGAAGGCTTCACAAA+AGG - chr5.1:21657418-21657437 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr5.1:21657796-21657815 MS.gene068605:intron 40.0%
TTAAAACCCTGCTCCTAAGA+TGG + chr5.1:21655283-21655302 MS.gene068605:intron 40.0%
TTAGCTTCAGGTCAGTTACA+CGG - chr5.1:21658282-21658301 None:intergenic 40.0%
TTATGCATTGTTCCCCTACT+AGG + chr5.1:21654945-21654964 MS.gene068605:intron 40.0%
TTGCCCTTAAGGATGAACTT+GGG + chr5.1:21658236-21658255 MS.gene068605:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr5.1:21657795-21657814 MS.gene068605:intron 40.0%
! ACGGAGTATTTGACAACACT+GGG + chr5.1:21657993-21658012 MS.gene068605:intron 40.0%
! ATATTAGGGAGAGTCGGTTT+CGG + chr5.1:21654696-21654715 MS.gene068605:CDS 40.0%
! CCTTCCTTTTTATTGTGCTG+AGG + chr5.1:21657456-21657475 MS.gene068605:intron 40.0%
! CGTTATAGTGCCACTATAGT+TGG + chr5.1:21657610-21657629 MS.gene068605:intron 40.0%
! CTGCAAACAACATTAGCTTC+AGG - chr5.1:21658294-21658313 None:intergenic 40.0%
! TAGTGGGTAACATAGCATAG+AGG - chr5.1:21655616-21655635 None:intergenic 40.0%
! TTGTAACCCTGATTCTGAGA+TGG + chr5.1:21655779-21655798 MS.gene068605:intron 40.0%
! TTTTATTGTGCTGAGGGGAT+GGG + chr5.1:21657463-21657482 MS.gene068605:intron 40.0%
! TTTTTATTGTGCTGAGGGGA+TGG + chr5.1:21657462-21657481 MS.gene068605:intron 40.0%
!! AAGTTTTGTATATGCCCTGG+TGG + chr5.1:21656945-21656964 MS.gene068605:CDS 40.0%
!! GATGATGGTGGTGATGAATT+TGG + chr5.1:21654515-21654534 MS.gene068605:CDS 40.0%
!!! CAATACTTTTTCCCACTAGG+TGG + chr5.1:21656637-21656656 MS.gene068605:intron 40.0%
!!! CAGGACTAGTCTTGGATTTT+GGG + chr5.1:21656788-21656807 MS.gene068605:intron 40.0%
!!! CATCCTGCGATTTGTTTTTG+AGG - chr5.1:21658420-21658439 None:intergenic 40.0%
!!! CTTAGGAGCAGGGTTTTAAA+AGG - chr5.1:21655282-21655301 None:intergenic 40.0%
!!! GAATGGTTTTTGGCCATGTT+TGG + chr5.1:21657150-21657169 MS.gene068605:intron 40.0%
AAAGAAGTGATCAGCACCCA+GGG - chr5.1:21656050-21656069 None:intergenic 45.0%
AAAGGTCCAAACCCAGATCT+GGG - chr5.1:21655096-21655115 None:intergenic 45.0%
AAAGTCTTGGAATCCCCATC+TGG - chr5.1:21654617-21654636 None:intergenic 45.0%
AACCGAATCAGTAGAGCTAC+CGG + chr5.1:21656888-21656907 MS.gene068605:CDS 45.0%
AAGCGGACACTTAAACATCC+AGG - chr5.1:21655405-21655424 None:intergenic 45.0%
AATAGTGACCAGAGGGAGTA+TGG - chr5.1:21657691-21657710 None:intergenic 45.0%
ACAGTGTTGTCAAACGCAGA+TGG + chr5.1:21657551-21657570 MS.gene068605:intron 45.0%
ACTCTGATGTGTTGCCCTTA+AGG + chr5.1:21658225-21658244 MS.gene068605:intron 45.0%
ACTGTGAAGGTGGTAGATTC+AGG + chr5.1:21654476-21654495 MS.gene068605:CDS 45.0%
AGACACCAAGGAAGCTTACT+GGG + chr5.1:21654642-21654661 MS.gene068605:CDS 45.0%
AGAGAAGAGTGAGGATTGCT+AGG - chr5.1:21654166-21654185 None:intergenic 45.0%
AGGTGAATGAGAGAAGAGTG+AGG - chr5.1:21654175-21654194 None:intergenic 45.0%
ATACTCAACCCCTTCATCTC+AGG + chr5.1:21654208-21654227 MS.gene068605:CDS 45.0%
ATGTGCCCTGCATAATATCC+AGG - chr5.1:21655952-21655971 None:intergenic 45.0%
ATGTTTAAGTGTCCGCTTCG+AGG + chr5.1:21655407-21655426 MS.gene068605:intron 45.0%
CACTCTTCAGTATGTTAGGC+TGG + chr5.1:21658570-21658589 MS.gene068605:intron 45.0%
CATATAATTAGGGACGGAGC+AGG - chr5.1:21657833-21657852 None:intergenic 45.0%
CCTTATTGGAACAGAACCCT+GGG + chr5.1:21656031-21656050 MS.gene068605:CDS 45.0%
CTATTAACCTGTGATCCACC+AGG - chr5.1:21656963-21656982 None:intergenic 45.0%
CTCATGCCTGGATATTATGC+AGG + chr5.1:21655943-21655962 MS.gene068605:intron 45.0%
GAAGCCAACATCATAGCTTG+GGG - chr5.1:21656152-21656171 None:intergenic 45.0%
GAGAAGAGTGAGGATTGCTA+GGG - chr5.1:21654165-21654184 None:intergenic 45.0%
GTACTGTGGTTTCAGCAACA+TGG + chr5.1:21655053-21655072 MS.gene068605:intron 45.0%
GTGCCTTGGAATCACAGTTT+AGG + chr5.1:21657508-21657527 MS.gene068605:intron 45.0%
GTGTCATAAGATGCGTGGAA+AGG + chr5.1:21654763-21654782 MS.gene068605:CDS 45.0%
GTTGCCCTTAAGGATGAACT+TGG + chr5.1:21658235-21658254 MS.gene068605:intron 45.0%
TAAAGGTCCAAACCCAGATC+TGG - chr5.1:21655097-21655116 None:intergenic 45.0%
TACTTCCCAGTAAGCTTCCT+TGG - chr5.1:21654650-21654669 None:intergenic 45.0%
TCCTTATTGGAACAGAACCC+TGG + chr5.1:21656030-21656049 MS.gene068605:CDS 45.0%
TCTACCACCTTCACAGTAAC+TGG - chr5.1:21654473-21654492 None:intergenic 45.0%
TTAGGTGCCAGTTACTGTGA+AGG + chr5.1:21654463-21654482 MS.gene068605:intron 45.0%
TTTATTGTGCTGAGGGGATG+GGG + chr5.1:21657464-21657483 MS.gene068605:intron 45.0%
! ACTGGGAAGTATGCTAGTGA+GGG + chr5.1:21654659-21654678 MS.gene068605:CDS 45.0%
! ATTGAGGAGGAAGATGATGG+TGG + chr5.1:21654503-21654522 MS.gene068605:CDS 45.0%
! CAAGTTGAATTTCGCGGAGA+TGG + chr5.1:21654565-21654584 MS.gene068605:CDS 45.0%
! GACGGAGTATTTGACAACAC+TGG + chr5.1:21657992-21658011 MS.gene068605:intron 45.0%
! TACTGGGAAGTATGCTAGTG+AGG + chr5.1:21654658-21654677 MS.gene068605:CDS 45.0%
!! GTGGAATACAAAGAGTGCCT+TGG + chr5.1:21657494-21657513 MS.gene068605:intron 45.0%
!!! ACTAGTCTTGGATTTTGGGC+TGG + chr5.1:21656792-21656811 MS.gene068605:CDS 45.0%
!!! GCAGGACTAGTCTTGGATTT+TGG + chr5.1:21656787-21656806 MS.gene068605:intron 45.0%
ACCGAATCAGTAGAGCTACC+GGG + chr5.1:21656889-21656908 MS.gene068605:CDS 50.0%
AGCCATTTGCTCTTCCAGCT+GGG + chr5.1:21656209-21656228 MS.gene068605:CDS 50.0%
CAAAGAAGTGATCAGCACCC+AGG - chr5.1:21656051-21656070 None:intergenic 50.0%
CAAATGGCTGCAGCACTTGA+GGG - chr5.1:21656198-21656217 None:intergenic 50.0%
CACACTCTCTTCTCTCTTCG+TGG + chr5.1:21654128-21654147 MS.gene068605:CDS 50.0%
CACGAAGAGAGAAGAGAGTG+TGG - chr5.1:21654130-21654149 None:intergenic 50.0%
CAGACACCAAGGAAGCTTAC+TGG + chr5.1:21654641-21654660 MS.gene068605:CDS 50.0%
CCCAGGGTTCTGTTCCAATA+AGG - chr5.1:21656034-21656053 None:intergenic 50.0%
GAGTGAGGATTGCTAGGGTT+AGG - chr5.1:21654160-21654179 None:intergenic 50.0%
GGGAGAGCAACATCTTTGTG+TGG - chr5.1:21656178-21656197 None:intergenic 50.0%
GTTGGTGTAAGGGCAACAGA+AGG + chr5.1:21656085-21656104 MS.gene068605:CDS 50.0%
TCGGACTCTTGATCCTGATC+AGG + chr5.1:21654715-21654734 MS.gene068605:CDS 50.0%
TGCTCCCCAAGCTATGATGT+TGG + chr5.1:21656145-21656164 MS.gene068605:CDS 50.0%
TTATGCTGTGGCCCAGATCT+GGG + chr5.1:21655082-21655101 MS.gene068605:intron 50.0%
TTATTGTGCTGAGGGGATGG+GGG + chr5.1:21657465-21657484 MS.gene068605:intron 50.0%
! CTGGGAAGTATGCTAGTGAG+GGG + chr5.1:21654660-21654679 MS.gene068605:CDS 50.0%
! TATATGCCCTGGTGGATCAC+AGG + chr5.1:21656953-21656972 MS.gene068605:CDS 50.0%
! TTTCTGGTACACCAGATGCC+CGG - chr5.1:21656910-21656929 None:intergenic 50.0%
!! GTGGTTTGCAGGACTAGTCT+TGG + chr5.1:21656780-21656799 MS.gene068605:intron 50.0%
CAGCCATTTGCTCTTCCAGC+TGG + chr5.1:21656208-21656227 MS.gene068605:CDS 55.0%
CATTTGCTCTTCCAGCTGGG+GGG + chr5.1:21656212-21656231 MS.gene068605:CDS 55.0%
CCATTTGCTCTTCCAGCTGG+GGG + chr5.1:21656211-21656230 MS.gene068605:CDS 55.0%
GCAAATGGCTGCAGCACTTG+AGG - chr5.1:21656199-21656218 None:intergenic 55.0%
GCCATTTGCTCTTCCAGCTG+GGG + chr5.1:21656210-21656229 MS.gene068605:CDS 55.0%
GGTGCCAGTTACTGTGAAGG+TGG + chr5.1:21654466-21654485 MS.gene068605:intron 55.0%
GTGTTACGCCATACTCCCTC+TGG + chr5.1:21657680-21657699 MS.gene068605:intron 55.0%
GTTATGCTGTGGCCCAGATC+TGG + chr5.1:21655081-21655100 MS.gene068605:intron 55.0%
TCTACATCATTCCCCCCAGC+TGG - chr5.1:21656226-21656245 None:intergenic 55.0%
! GCCCGGTAGCTCTACTGATT+CGG - chr5.1:21656893-21656912 None:intergenic 55.0%
CAGGTAGCTGCTACTCCCTC+CGG - chr5.1:21657814-21657833 None:intergenic 60.0%
CAGTAGAGCTACCGGGCATC+TGG + chr5.1:21656896-21656915 MS.gene068605:CDS 60.0%
CCCCCAGCTGGAAGAGCAAA+TGG - chr5.1:21656214-21656233 None:intergenic 60.0%
CTGTGGCCCAGATCTGGGTT+TGG + chr5.1:21655087-21655106 MS.gene068605:intron 60.0%
! TGGGGAGCACACTGCTCGAA+TGG - chr5.1:21656134-21656153 None:intergenic 60.0%
!! GAGGGGATGGGGGTTAGTTG+TGG + chr5.1:21657475-21657494 MS.gene068605:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 21654086 21658749 21654086 ID=MS.gene068605
chr5.1 mRNA 21654086 21658749 21654086 ID=MS.gene068605.t1;Parent=MS.gene068605
chr5.1 exon 21654086 21654229 21654086 ID=MS.gene068605.t1.exon1;Parent=MS.gene068605.t1
chr5.1 CDS 21654086 21654229 21654086 ID=cds.MS.gene068605.t1;Parent=MS.gene068605.t1
chr5.1 exon 21654467 21654784 21654467 ID=MS.gene068605.t1.exon2;Parent=MS.gene068605.t1
chr5.1 CDS 21654467 21654784 21654467 ID=cds.MS.gene068605.t1;Parent=MS.gene068605.t1
chr5.1 exon 21655965 21656251 21655965 ID=MS.gene068605.t1.exon3;Parent=MS.gene068605.t1
chr5.1 CDS 21655965 21656251 21655965 ID=cds.MS.gene068605.t1;Parent=MS.gene068605.t1
chr5.1 exon 21656791 21657023 21656791 ID=MS.gene068605.t1.exon4;Parent=MS.gene068605.t1
chr5.1 CDS 21656791 21657023 21656791 ID=cds.MS.gene068605.t1;Parent=MS.gene068605.t1
chr5.1 exon 21658314 21658471 21658314 ID=MS.gene068605.t1.exon5;Parent=MS.gene068605.t1
chr5.1 CDS 21658314 21658471 21658314 ID=cds.MS.gene068605.t1;Parent=MS.gene068605.t1
chr5.1 exon 21658744 21658749 21658744 ID=MS.gene068605.t1.exon6;Parent=MS.gene068605.t1
chr5.1 CDS 21658744 21658749 21658744 ID=cds.MS.gene068605.t1;Parent=MS.gene068605.t1
Gene Sequence

>MS.gene068605

ATGATGTCTTCCGTGAAGCAAAATCAACAACAATCTTCATTCCACACTCTCTTCTCTCTTCGTGGTTCACTCCTAACCCTAGCAATCCTCACTCTTCTCTCATTCACCTATCTTTCTCTCAAATACTCAACCCCTTCATCTCAGGTAAACAAAATCGAAATCTAAACCCAACCTATTTCCAAATTTTCTATTTTTCGATGACCCTTTTGGTTTTTTGTTGTTTCTTAGGTGTCAGTACCAGTTGCAAATCTTGTTGATGCAGGAAAAAATGTAGACGAAGTAAACAAAAATTAAAATCTAAACCCAACACATTTCTAAATTTTGCATTTTTTTACGGTTTTTTATGGTTTTTTTATGGCCCTTTTGTTTTTTGTTTCTTAGGTGCCAGTTACTGTGAAGGTGGTAGATTCAGGAAAAATTGAGGAGGAAGATGATGGTGGTGATGAATTTGGTGATGTGTATCATTCGCCACGAGTGTTCAAGTTGAATTTCGCGGAGATGGAGAAGAAGTTTAAGGTTTATATATATCCAGATGGGGATTCCAAGACTTTTTATCAGACACCAAGGAAGCTTACTGGGAAGTATGCTAGTGAGGGGTATTTCTTTCAGAATATTAGGGAGAGTCGGTTTCGGACTCTTGATCCTGATCAGGCTCATCTGTTTTTCATTCCTATTTCGTGTCATAAGATGCGTGGAAAGGTATTGTAACCACATTTGTAATGTTGTGCTTTATTGCTTGGTTTTTAATGGCTGTGTTGCAATTATTAATATCGCTGAGAATCGTTGTTAAGTACAGTGTCTGAATCACAGTGTGTGTTGATTGCATAGACATAAAAAATATTGATTACTGGATTGATCCTTATGCATTGTTCCCCTACTAGGGTATTAAGTAGAAGTAACGATTGCGTTTGCGCCGTGATCCTTGATTTACAGAGAATCGTGATCAAATGCGGACTTAGTCACAATTGTACTGTGGTTTCAGCAACATGGAAATTGTTATGCTGTGGCCCAGATCTGGGTTTGGACCTTTATTTAAAACCCTACTCCTGAATAAAAATATGACGAATCTGTGTCACCAAATCTAAGGGGTGAATTGTGTTGAATGTTTCGTGTATTTTTGCATCTGGTTAGTGGAAAATTGTAGTAATGGTATCTATAGTAACTGTGTCTGTAGTACTGTACTTAAGTTTTATCCTTTTAAAACCCTGCTCCTAAGATGGAAATAATCACTTATTTGTTCATGGTTTATTACCATGGTGCTGTAAATATAGCTAAACAGGAAATGATAAGTAATATGAAAGATTTAGAATGTCTAGCCTGGATGTTTAAGTGTCCGCTTCGAGGTAGAATAGAATATAGTCAGTCTCATGTTTGGATACTGTGCAGAGCACATCTTATAATGTTTGGATACTGTGCAGAGCACATCTTATGAGAATATCTGTAAAAATCTTGATGCTGTGGCTTAGATTGCAGTTTTGTCTTGGGCTTTTTATTAAAAGGATTACACTTACATCTAGATCCGAATGTCCTCTATGCTATGTTACCCACTAAAAATATACCAAAACTGTCACTAATTTCTTTCCGCCTATTCTAAGGTGTGAATTGCGTTAACTGTTTTCTGAGTGTTTATGCATCATTTTAGTGTAAAACCATAGCAACGATATCTATAGTAATGCACCTAAATCTTGTGCTCTTGTAACCCTGATTCTGAGATGGAAATAACTGATTATTTGTTCATGATTTGTTACCATGAGGCAGTAAATTTACAGCTAAAAAGGAAATGATAAGTAGTAAGAAAGTTTTAGAATGTTTAGCTTGGATGGCTAAGTTTCTACTTCTAGGTTGAATGTAGTCAAACTCATGCCTGGATATTATGCAGGGCACATCTTATGAGAATATGACCATAATTGTACAAAATTACGTGGAAAGCTTGATATCCAAGTATCCTTATTGGAACAGAACCCTGGGTGCTGATCACTTCTTTGTCACTTGTCATGATGTTGGTGTAAGGGCAACAGAAGGACTTCCATTACTTGTGAAGAATTCCATTCGAGCAGTGTGCTCCCCAAGCTATGATGTTGGCTTCATTCCACACAAAGATGTTGCTCTCCCTCAAGTGCTGCAGCCATTTGCTCTTCCAGCTGGGGGGAATGATGTAGAAAATAGGTGAAGCCTCTTCAGATTTACTTTTTTTTTTTTTTTTTTTTTACCTCTTCCATTTATCTAGATTATTATACTAAAATTGGTTCAAATTATGTTTTGTGGATCAAACTTTTCTTGTTTATATTGTTATCATCATGTTATTTTAAGTTTCGTGTCAATCTTGTTGTGGTCCTTTATCTAAACTTACTCACAGTACACAAGTCTTTAGTTTCTAAAATGATCTATAGTTGCACGTCAATTTCAAAATTTGTTTGACCTGGTTTAACATTACGAACATTGTGGGTCTTAATATTTTCCTTGGAGTAATAATTACTACTTTCAAAGATCCCAAGATATGAAAAATGTTGCTGGGATAATTAGATTATTTATTTCATACAGCAAAGAAAAACAATACTTTTTCCCACTAGGTGGGAATGTTTTATTTCATAAGATAAACAAATATTGTTGGTATGTTGATATATAATTTGTTCAGGAAGATCAATATTCGATAAACAATAGTTTTACATTCCATTGTGAAAATTTAATAATTTTGTGGTTTGCAGGACTAGTCTTGGATTTTGGGCTGGTCATCGTAACTCTAAAATTAGAGTTATTCTTGCACGTGTATGGGAAAATGACACAGAACTTGATATTTCAAATAACCGAATCAGTAGAGCTACCGGGCATCTGGTGTACCAGAAAAGATTTTACAGCACTAAGTTTTGTATATGCCCTGGTGGATCACAGGTTAATAGTGCTCGAATAGCAGATTCTATCCATTATGGATGCATACCTGGTAAGTAAACCTTTCTGATATTTTTTAACCTTTTAATTTTGTGGTTGCTTATATTGAGCTTCTCAAAACTGCATGCCTATATGACAAATGACAATGCTAGCATATACGAACATGATACTTATTCCTGAATGGTTTTTGGCCATGTTTGGATAAACAACTTAATTAAGTGTTTATGTTTAAGCTATTTCTATAACAAAAGCTAAAATAAAGTCAAATTGTTTATTGTCATAAGCTCTCTCAAACAGCCTCACAAGTGTTTATGCCAGTAGATAAGTTCAAATAAGTCAAGCCAAACTAGTCCTTTGTCATGTTAAATTTACCTTGCATTTGTTGTATATCGGTTATTGGTTAACAAACATATGTGATCCCTATCCTTTTCCATACTGATTAACCTTTTGTGAAGCCTTCACATCAACCATTACATCTTGCAATCCTTCCTTTTTATTGTGCTGAGGGGATGGGGGTTAGTTGTGGAATACAAAGAGTGCCTTGGAATCACAGTTTAGGAGTCCTTAGCTAAGGTTGAAACAGTGTTGTCAAACGCAGATGGCAGAAAATAGCAGTTTGTTCAAATTCAGCTATCTACCGTTATAGTGCCACTATAGTTGGTATTTGACATCACTTTGTACTAAATATCGTTTCACGAAACAATAGTGGTGTTACGCCATACTCCCTCTGGTCACTATTATAAGCAAAAGTTCACTTTTTAGATTCATTCAATAAATGATGTATGTAGTCATAGTTTATTGAATGAATCTAAAAAGTCAATTTTTGCTTATAATAGTGACCGGAGGGAGTAGCAGCTACCTGCTCCGTCCCTAATTATATGATATTTTTTGTTCATTTCACACAAATTAAGAAGTGTAATTAATATTAGGAAAAGTAGCATTTAATGCTTCATTGGTATTGTAGTGCGACTTATAATTTGGGACAATTTTTCTCTCCAAAATGACTTATAATTTGGGATGGACGGAGTATTTGACAACACTGGGTCGAAGTACTTTATTATTGGGTGATAATAAATCTCAAATTCAATTATACTCCACCTATCCAATTGAACATATACTTGGGTGATAATAAATTTCAAATTCGATTATAACTCACCGATCGAATTGCACGTATACTTCTGCCCAATTGTTACACGCGTGACATTTAAACTATAACTTGGTTTGAATGATTTATCATTGAATGTTTAATTTTGACTCTGATGTGTTGCCCTTAAGGATGAACTTGGGATGTAAGAGTCTTTACACAACCGTGTAACTGACCTGAAGCTAATGTTGTTTGCAGTGATATTGTCAAATTACTATGACCTTCCTTTTAATGATATTCTTGACTGGAGAAAATTTGCTGTTGTACTCAAGGAGAGCGATGTATACCAGCTTAAACAAATCCTCAAAAACAAATCGCAGGATGAGTTTGTTGCACTTCATAATAATTTAGTAAAGGTGATCTTCTCATTACTGTATTTCAAGAAATATTTCAATGCGTCATGGTTAAATTTTACTCTGGAATTTTTTATTATCTATGTCTTTTATAAAGTCATCACTCTTCAGTATGTTAGGCTGGTATTATAACCCCCCAAAAAAAAAAAAATACACTTAAAATTTCAAGAAAAAATAGTTTAAAGACTATGGCAATGACACTGTAAAACTTTTTTACATAATCAATCTAATTAGATCTTGTCATATAGATGTTTGTTGACATATTTCCCTTTTAGAATTAA
Protein sequence

>MS.gene068605.t1

MMSSVKQNQQQSSFHTLFSLRGSLLTLAILTLLSFTYLSLKYSTPSSQVPVTVKVVDSGKIEEEDDGGDEFGDVYHSPRVFKLNFAEMEKKFKVYIYPDGDSKTFYQTPRKLTGKYASEGYFFQNIRESRFRTLDPDQAHLFFIPISCHKMRGKGTSYENMTIIVQNYVESLISKYPYWNRTLGADHFFVTCHDVGVRATEGLPLLVKNSIRAVCSPSYDVGFIPHKDVALPQVLQPFALPAGGNDVENRTSLGFWAGHRNSKIRVILARVWENDTELDISNNRISRATGHLVYQKRFYSTKFCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWRKFAVVLKESDVYQLKQILKNKSQDEFVALHNNLVKN