AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036711

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036711.t1 MTR_4g115460 93.452 336 22 0 1 336 129 464 0.0 664
MS.gene036711.t1 MTR_4g115540 64.201 338 115 3 1 334 289 624 5.23e-160 461
MS.gene036711.t1 MTR_4g115530 60.000 340 130 3 1 336 55 392 2.56e-145 416
MS.gene036711.t1 MTR_4g115530 60.000 340 130 3 1 336 1 338 2.70e-145 414
MS.gene036711.t1 MTR_7g103260 53.593 334 151 3 1 334 68 397 1.16e-128 374
MS.gene036711.t1 MTR_7g103270 53.731 335 149 4 1 334 69 398 1.63e-128 373
MS.gene036711.t1 MTR_3g106690 54.167 336 149 3 1 334 59 391 1.42e-127 370
MS.gene036711.t1 MTR_1g061760 53.116 337 149 5 1 334 154 484 5.77e-122 360
MS.gene036711.t1 MTR_3g097310 54.464 336 145 5 1 334 162 491 2.34e-121 358
MS.gene036711.t1 MTR_3g081240 53.892 334 146 5 1 332 117 444 1.66e-120 354
MS.gene036711.t1 MTR_3g080690 52.994 334 149 5 1 332 115 442 1.30e-119 352
MS.gene036711.t1 MTR_4g115540 61.847 249 89 3 1 245 289 535 1.80e-109 329
MS.gene036711.t1 MTR_3g110198 43.787 338 171 6 1 330 264 590 1.65e-91 285
MS.gene036711.t1 MTR_1g006600 44.083 338 170 6 1 330 257 583 6.41e-90 280
MS.gene036711.t1 MTR_7g103150 43.284 335 177 6 1 330 155 481 1.35e-88 274
MS.gene036711.t1 MTR_1g090733 42.857 343 172 8 1 334 222 549 1.34e-87 273
MS.gene036711.t1 MTR_4g100730 44.940 336 170 8 5 331 204 533 1.92e-87 273
MS.gene036711.t1 MTR_3g110200 42.433 337 177 9 1 330 261 587 4.61e-85 268
MS.gene036711.t1 MTR_8g102840 41.840 337 181 6 5 333 283 612 5.11e-84 266
MS.gene036711.t1 MTR_5g031480 35.000 340 199 10 1 333 90 414 1.20e-65 213
MS.gene036711.t1 MTR_5g049790 35.417 336 187 11 1 333 126 434 5.57e-62 204
MS.gene036711.t1 MTR_8g102840 38.683 243 137 5 5 242 283 518 1.73e-52 181
MS.gene036711.t1 MTR_7g085840 32.764 351 199 12 1 336 1 329 9.24e-50 169
MS.gene036711.t1 MTR_5g031480 34.375 256 146 10 1 249 90 330 4.76e-38 138
MS.gene036711.t1 MTR_5g031480 34.118 255 146 10 1 248 90 329 2.57e-37 137
MS.gene036711.t1 MTR_8g096140 27.393 303 193 8 42 325 90 384 3.78e-29 116
MS.gene036711.t1 MTR_8g096160 27.393 303 193 8 42 325 90 384 9.89e-29 115
MS.gene036711.t1 MTR_5g049790 34.615 208 118 9 1 205 126 318 1.08e-27 110
MS.gene036711.t1 MTR_5g049790 34.615 208 118 9 1 205 143 335 1.09e-27 110
MS.gene036711.t1 MTR_2g084245 25.788 349 228 11 1 325 85 426 6.14e-25 104
MS.gene036711.t1 MTR_4g057500 26.384 307 195 8 42 325 146 444 5.15e-23 99.8
MS.gene036711.t1 MTR_8g080490 29.355 310 181 13 48 336 117 409 6.90e-22 95.9
MS.gene036711.t1 MTR_4g077920 28.968 252 158 7 98 334 166 411 9.15e-21 92.8
MS.gene036711.t1 MTR_4g077920 28.968 252 158 7 98 334 224 469 1.33e-20 92.8
MS.gene036711.t1 MTR_4g077920 30.043 233 142 7 98 315 224 450 6.10e-20 90.5
MS.gene036711.t1 MTR_3g037720 29.707 239 150 6 98 325 239 470 4.46e-19 88.2
MS.gene036711.t1 MTR_3g085480 27.517 298 180 12 48 325 119 400 1.46e-18 86.3
MS.gene036711.t1 MTR_6g027310 27.823 248 164 6 98 336 235 476 7.92e-17 81.6
MS.gene036711.t1 MTR_7g087100 27.148 291 188 10 48 325 191 470 1.90e-16 80.5
MS.gene036711.t1 MTR_4g084200 24.679 312 188 12 48 336 163 450 2.17e-16 80.1
MS.gene036711.t1 MTR_1g029350 24.079 353 210 14 6 322 75 405 9.08e-14 72.0
MS.gene036711.t1 MTR_1g097090 24.839 310 207 8 24 309 116 423 6.58e-12 66.6
MS.gene036711.t1 MTR_1g097090 24.839 310 207 8 24 309 116 423 7.11e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036711.t1 AT5G20260 66.964 336 108 2 1 335 1 334 7.31e-171 478
MS.gene036711.t1 AT5G20260 66.964 336 108 2 1 335 28 361 8.54e-171 479
MS.gene036711.t1 AT5G20260 66.964 336 108 2 1 335 133 466 3.72e-170 481
MS.gene036711.t1 AT3G42180 60.526 342 126 3 1 335 1 340 5.69e-155 438
MS.gene036711.t1 AT3G42180 60.526 342 126 3 1 335 130 469 8.19e-154 440
MS.gene036711.t1 AT5G11130 57.440 336 141 1 1 336 1 334 1.51e-151 429
MS.gene036711.t1 AT5G11130 57.440 336 141 1 1 336 145 478 3.04e-150 431
MS.gene036711.t1 AT5G33290 59.238 341 130 3 1 334 160 498 4.91e-143 414
MS.gene036711.t1 AT5G03795 55.060 336 143 4 1 334 186 515 3.29e-129 379
MS.gene036711.t1 AT5G25310 50.145 345 149 5 1 334 147 479 4.19e-120 355
MS.gene036711.t1 AT3G07620 51.488 336 156 3 1 334 128 458 1.83e-119 352
MS.gene036711.t1 AT4G16745 45.808 334 170 6 5 331 200 529 3.75e-95 293
MS.gene036711.t1 AT5G25820 43.750 336 177 6 1 330 320 649 2.12e-87 276
MS.gene036711.t1 AT4G32790 40.896 335 186 6 1 330 263 590 4.05e-85 268
MS.gene036711.t1 AT4G32790 40.896 335 186 6 1 330 263 590 4.05e-85 268
MS.gene036711.t1 AT4G32790 40.896 335 186 6 1 330 263 590 4.05e-85 268
MS.gene036711.t1 AT5G19670 40.896 335 186 5 1 330 277 604 4.63e-85 268
MS.gene036711.t1 AT5G19670 40.896 335 186 5 1 330 277 604 4.63e-85 268
MS.gene036711.t1 AT4G16745 44.548 321 164 7 5 315 200 516 2.05e-84 266
MS.gene036711.t1 AT5G11610 39.941 338 184 10 1 330 216 542 1.29e-79 253
MS.gene036711.t1 AT5G37000 37.758 339 190 6 1 330 222 548 9.38e-77 245
MS.gene036711.t1 AT4G38040 36.826 334 191 9 1 328 100 419 1.97e-70 225
MS.gene036711.t1 AT4G38040 35.484 310 180 9 1 304 100 395 3.95e-59 196
MS.gene036711.t1 AT5G11610 35.802 243 140 8 1 237 216 448 4.12e-42 152
MS.gene036711.t1 AT1G27440 29.703 303 186 8 42 325 86 380 3.06e-34 130
MS.gene036711.t1 AT5G61840 29.043 303 188 8 42 325 89 383 1.63e-32 125
MS.gene036711.t1 AT5G22940 27.187 320 191 11 42 333 149 454 8.64e-25 104
MS.gene036711.t1 AT5G22940 27.187 320 191 11 42 333 178 483 1.00e-24 104
MS.gene036711.t1 AT2G28110 25.329 304 194 10 46 325 139 433 5.58e-21 93.6
MS.gene036711.t1 AT1G67410 28.076 317 199 10 27 325 101 406 2.15e-19 89.0
MS.gene036711.t1 AT5G16890 27.778 252 161 6 98 334 230 475 5.15e-18 85.1
MS.gene036711.t1 AT5G11610 37.069 116 69 3 1 114 216 329 7.00e-17 80.9
MS.gene036711.t1 AT1G74680 29.289 239 151 6 98 325 201 432 6.30e-16 79.0
MS.gene036711.t1 AT3G45400 26.280 293 192 11 46 325 155 436 1.97e-15 77.4
MS.gene036711.t1 AT1G21480 24.713 348 216 14 5 322 89 420 7.90e-15 75.5
MS.gene036711.t1 AT2G35100 24.771 327 189 15 36 336 117 412 1.25e-13 72.0
MS.gene036711.t1 AT3G03650 28.807 243 147 9 98 326 245 475 1.37e-13 72.0
MS.gene036711.t1 AT5G44930 25.246 305 187 13 48 336 129 408 6.37e-13 69.7
MS.gene036711.t1 AT5G44930 25.246 305 187 13 48 336 129 408 6.37e-13 69.7
MS.gene036711.t1 AT1G21480 24.920 313 189 14 5 287 89 385 2.39e-12 67.8

Find 81 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATGCAATTTCAAGTATT+TGG 0.110818 8.2:-13174308 None:intergenic
CCTGGATTGTGGGTCGAAAA+TGG 0.240619 8.2:-13173447 None:intergenic
TCTATACTTGCTTTCTTTGC+TGG 0.242144 8.2:+13173962 MS.gene036711:CDS
TAACCTCGTAGGTTCATTTC+AGG 0.252052 8.2:-13173896 None:intergenic
AGCAAGTATAGAACGATTAT+TGG 0.276848 8.2:-13173951 None:intergenic
TGCTAGTATCTTGTCATGAT+TGG 0.291031 8.2:+13173640 MS.gene036711:CDS
GCAAGTATAGAACGATTATT+GGG 0.296669 8.2:-13173950 None:intergenic
ATTTCACTTATCCTCTTTGA+TGG 0.296990 8.2:-13174256 None:intergenic
ATATGATTCTTCATTCAATA+TGG 0.299138 8.2:+13174395 MS.gene036711:CDS
CCTTGACTATTATAACTTCA+TGG 0.304105 8.2:+13174075 MS.gene036711:CDS
CACGATGTTTGTAACACTTA+AGG 0.337609 8.2:-13173493 None:intergenic
TTGGGGTCTTGGCTTGGAAT+TGG 0.358055 8.2:-13173932 None:intergenic
GAAAGACATTACTAGATCAT+TGG 0.372966 8.2:+13174005 MS.gene036711:CDS
TAGAACGATTATTGGGGTCT+TGG 0.380572 8.2:-13173943 None:intergenic
ACAAATATACATACTGGAAT+AGG 0.400120 8.2:+13173598 MS.gene036711:CDS
CGATTATTGGGGTCTTGGCT+TGG 0.400208 8.2:-13173938 None:intergenic
GCTAGTATCTTGTCATGATT+GGG 0.406660 8.2:+13173641 MS.gene036711:CDS
ATGTGTCCCTGTGATTATTT+CGG 0.410414 8.2:+13174174 MS.gene036711:CDS
GAACTCTCTCTTGAGATATC+TGG 0.413598 8.2:-13173785 None:intergenic
GGCTTAGAAGACTTAATATC+AGG 0.413995 8.2:+13174416 MS.gene036711:CDS
AGGTGGTGAGAGGATTGTAT+AGG 0.417312 8.2:-13173521 None:intergenic
ACGATGTTTGTAACACTTAA+GGG 0.422105 8.2:-13173492 None:intergenic
TTCTTTGCTGGAGGGGAACA+TGG 0.426896 8.2:+13173974 MS.gene036711:CDS
CCTTTAGTGATGTTCTTGAT+TGG 0.432626 8.2:+13174212 MS.gene036711:CDS
TAGCTCACAAATATACATAC+TGG 0.446526 8.2:+13173592 MS.gene036711:CDS
GGACCCATGAGTTCAATTTA+CGG 0.449067 8.2:+13173381 MS.gene036711:CDS
ATGGGTCCATCATGGACTAA+TGG 0.462703 8.2:-13173366 None:intergenic
TTTATAGCCTCCACAAGTCT+AGG 0.463002 8.2:-13174145 None:intergenic
ATCATATGGAACACATCAAA+TGG 0.468399 8.2:-13174379 None:intergenic
GATATCTCAAGAGAGAGTTC+AGG 0.482093 8.2:+13173788 MS.gene036711:CDS
CCAATCAAGAACATCACTAA+AGG 0.485979 8.2:-13174212 None:intergenic
TGCAATGCCAACACTTCTGA+AGG 0.487656 8.2:+13173845 MS.gene036711:CDS
CTTGACTATTATAACTTCAT+GGG 0.493869 8.2:+13174076 MS.gene036711:CDS
TACTTGCTTTCTTTGCTGGA+GGG 0.494336 8.2:+13173966 MS.gene036711:CDS
ACTTGCTTTCTTTGCTGGAG+GGG 0.497780 8.2:+13173967 MS.gene036711:CDS
ATGAGCCTCACCTGGATTGT+GGG 0.504392 8.2:-13173457 None:intergenic
ATACTTGCTTTCTTTGCTGG+AGG 0.505445 8.2:+13173965 MS.gene036711:CDS
AACACATCAAATGGTTTAGC+TGG 0.509660 8.2:-13174370 None:intergenic
CATGAGCCTCACCTGGATTG+TGG 0.511485 8.2:-13173458 None:intergenic
GATGCCGTAAATTGAACTCA+TGG 0.512290 8.2:-13173385 None:intergenic
CAATCAAGAACATCACTAAA+GGG 0.519860 8.2:-13174211 None:intergenic
ATCAAACCCTTCAGAAGTGT+TGG 0.526802 8.2:-13173852 None:intergenic
AATACTTGAAATTGCATAGG+AGG 0.530615 8.2:+13174311 MS.gene036711:CDS
ATCCTCTCACCACCTACTCT+AGG 0.536514 8.2:+13173529 MS.gene036711:CDS
TCCTCTCACCACCTACTCTA+GGG 0.546196 8.2:+13173530 MS.gene036711:CDS
TTGAACTCATGGGTCCATCA+TGG 0.546538 8.2:-13173374 None:intergenic
CCATGAAGTTATAATAGTCA+AGG 0.546984 8.2:-13174075 None:intergenic
ACATCAAATGGTTTAGCTGG+TGG 0.550230 8.2:-13174367 None:intergenic
CATTGCATATTCCATCAAAG+AGG 0.550546 8.2:+13174245 MS.gene036711:CDS
ATATTGAATGAAGAATCATA+TGG 0.569350 8.2:-13174393 None:intergenic
TATGATGTTGGTATAATCAA+TGG 0.573069 8.2:-13173571 None:intergenic
CTAGCTACTTCATAGCCACT+AGG 0.575455 8.2:-13174121 None:intergenic
ATGCCGTAAATTGAACTCAT+GGG 0.576487 8.2:-13173384 None:intergenic
CTTGTGGAGGCTATAAACAC+TGG 0.576575 8.2:+13174151 MS.gene036711:CDS
AGTTCAATTTACGGCATCGA+GGG 0.576949 8.2:+13173390 MS.gene036711:CDS
TAGTTATCCGAAATAATCAC+AGG 0.577606 8.2:-13174181 None:intergenic
CCAAATACTTGAAATTGCAT+AGG 0.578554 8.2:+13174308 MS.gene036711:CDS
TTATAGCCTCCACAAGTCTA+GGG 0.580695 8.2:-13174144 None:intergenic
ATAAAGACATGAGCCTCACC+TGG 0.585498 8.2:-13173465 None:intergenic
AGTAGCTAGCCCTAGACTTG+TGG 0.585836 8.2:+13174135 MS.gene036711:CDS
AATTTCAAGTATTTGGCATG+TGG 0.589637 8.2:-13174301 None:intergenic
GAACCACCATTAGTCCATGA+TGG 0.592867 8.2:+13173360 MS.gene036711:CDS
TGTTGAAGAGATTCAAAGTG+TGG 0.597057 8.2:+13173322 MS.gene036711:CDS
CAAATTGTCAAATATCAAAG+TGG 0.601264 8.2:-13174442 None:intergenic
AAAGTGTGGACTTACAAAGA+AGG 0.614004 8.2:+13173336 MS.gene036711:CDS
AGCTAGCCCTAGACTTGTGG+AGG 0.616370 8.2:+13174138 MS.gene036711:CDS
ACATACTGGAATAGGAGCAA+AGG 0.616663 8.2:+13173606 MS.gene036711:CDS
GCAATGCCAACACTTCTGAA+GGG 0.617080 8.2:+13173846 MS.gene036711:CDS
CATGAGTTGATCCCTAGAGT+AGG 0.623286 8.2:-13173541 None:intergenic
TTCGACCCACAATCCAGGTG+AGG 0.626786 8.2:+13173452 MS.gene036711:CDS
ATATTTGTGAGCTATGATGT+TGG 0.628553 8.2:-13173583 None:intergenic
ATACTTGAAATTGCATAGGA+GGG 0.629608 8.2:+13174312 MS.gene036711:CDS
TCCCTAGAGTAGGTGGTGAG+AGG 0.630441 8.2:-13173531 None:intergenic
GAGTTGATCCCTAGAGTAGG+TGG 0.634706 8.2:-13173538 None:intergenic
GGTCCATCATGGACTAATGG+TGG 0.652143 8.2:-13173363 None:intergenic
ACATTACTAGATCATTGGAA+AGG 0.655493 8.2:+13174010 MS.gene036711:CDS
GAGTTCAATTTACGGCATCG+AGG 0.664849 8.2:+13173389 MS.gene036711:CDS
AGCTCAACTTGTAACCTCGT+AGG 0.674415 8.2:-13173907 None:intergenic
AGTTATCCGAAATAATCACA+GGG 0.706311 8.2:-13174180 None:intergenic
CAAGTATAGAACGATTATTG+GGG 0.712230 8.2:-13173949 None:intergenic
ATGCCTGAAATGAACCTACG+AGG 0.781179 8.2:+13173893 MS.gene036711:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGATTCTTCATTCAATA+TGG + chr8.2:13174395-13174414 MS.gene036711:CDS 20.0%
!! ATATTGAATGAAGAATCATA+TGG - chr8.2:13174396-13174415 None:intergenic 20.0%
!! ATGAGTAAATATTCAACATT+TGG - chr8.2:13173686-13173705 None:intergenic 20.0%
!!! TTATAATAGTCAAGGTTTTT+AGG - chr8.2:13174070-13174089 None:intergenic 20.0%
! ACAAATATACATACTGGAAT+AGG + chr8.2:13173598-13173617 MS.gene036711:CDS 25.0%
! CTATGCATCATTAAAAAGTA+AGG - chr8.2:13173745-13173764 None:intergenic 25.0%
! CTTGACTATTATAACTTCAT+GGG + chr8.2:13174076-13174095 MS.gene036711:CDS 25.0%
! TATGATGTTGGTATAATCAA+TGG - chr8.2:13173574-13173593 None:intergenic 25.0%
!!! AATATTCAACATTTGGTGTA+TGG - chr8.2:13173679-13173698 None:intergenic 25.0%
!!! CATAGTAATTAATTTGTTGC+AGG + chr8.2:13173760-13173779 MS.gene036711:intron 25.0%
AATACTTGAAATTGCATAGG+AGG + chr8.2:13174311-13174330 MS.gene036711:CDS 30.0%
ACATTACTAGATCATTGGAA+AGG + chr8.2:13174010-13174029 MS.gene036711:CDS 30.0%
ACGATGTTTGTAACACTTAA+GGG - chr8.2:13173495-13173514 None:intergenic 30.0%
AGCAAGTATAGAACGATTAT+TGG - chr8.2:13173954-13173973 None:intergenic 30.0%
AGTTATCCGAAATAATCACA+GGG - chr8.2:13174183-13174202 None:intergenic 30.0%
ATACTTGAAATTGCATAGGA+GGG + chr8.2:13174312-13174331 MS.gene036711:CDS 30.0%
ATATTTGTGAGCTATGATGT+TGG - chr8.2:13173586-13173605 None:intergenic 30.0%
ATCATATGGAACACATCAAA+TGG - chr8.2:13174382-13174401 None:intergenic 30.0%
ATTTCACTTATCCTCTTTGA+TGG - chr8.2:13174259-13174278 None:intergenic 30.0%
CAAGTATAGAACGATTATTG+GGG - chr8.2:13173952-13173971 None:intergenic 30.0%
CAATCAAGAACATCACTAAA+GGG - chr8.2:13174214-13174233 None:intergenic 30.0%
CCAAATACTTGAAATTGCAT+AGG + chr8.2:13174308-13174327 MS.gene036711:CDS 30.0%
CCATGAAGTTATAATAGTCA+AGG - chr8.2:13174078-13174097 None:intergenic 30.0%
CCTTGACTATTATAACTTCA+TGG + chr8.2:13174075-13174094 MS.gene036711:CDS 30.0%
GAAAGACATTACTAGATCAT+TGG + chr8.2:13174005-13174024 MS.gene036711:CDS 30.0%
GCAAGTATAGAACGATTATT+GGG - chr8.2:13173953-13173972 None:intergenic 30.0%
TAGCTCACAAATATACATAC+TGG + chr8.2:13173592-13173611 MS.gene036711:CDS 30.0%
TAGTTATCCGAAATAATCAC+AGG - chr8.2:13174184-13174203 None:intergenic 30.0%
! AATTTCAAGTATTTGGCATG+TGG - chr8.2:13174304-13174323 None:intergenic 30.0%
! CCTATGCAATTTCAAGTATT+TGG - chr8.2:13174311-13174330 None:intergenic 30.0%
AAAGTGTGGACTTACAAAGA+AGG + chr8.2:13173336-13173355 MS.gene036711:CDS 35.0%
AACACATCAAATGGTTTAGC+TGG - chr8.2:13174373-13174392 None:intergenic 35.0%
ATGCCGTAAATTGAACTCAT+GGG - chr8.2:13173387-13173406 None:intergenic 35.0%
ATGTGTCCCTGTGATTATTT+CGG + chr8.2:13174174-13174193 MS.gene036711:CDS 35.0%
CACGATGTTTGTAACACTTA+AGG - chr8.2:13173496-13173515 None:intergenic 35.0%
CATTGCATATTCCATCAAAG+AGG + chr8.2:13174245-13174264 MS.gene036711:CDS 35.0%
CCAATCAAGAACATCACTAA+AGG - chr8.2:13174215-13174234 None:intergenic 35.0%
CCTTTAGTGATGTTCTTGAT+TGG + chr8.2:13174212-13174231 MS.gene036711:CDS 35.0%
GCTAGTATCTTGTCATGATT+GGG + chr8.2:13173641-13173660 MS.gene036711:CDS 35.0%
GGCTTAGAAGACTTAATATC+AGG + chr8.2:13174416-13174435 MS.gene036711:CDS 35.0%
TCTATACTTGCTTTCTTTGC+TGG + chr8.2:13173962-13173981 MS.gene036711:CDS 35.0%
TGCTAGTATCTTGTCATGAT+TGG + chr8.2:13173640-13173659 MS.gene036711:CDS 35.0%
TGTTGAAGAGATTCAAAGTG+TGG + chr8.2:13173322-13173341 MS.gene036711:CDS 35.0%
!! ATTCAACATTTGGTGTATGG+TGG - chr8.2:13173676-13173695 None:intergenic 35.0%
ACATACTGGAATAGGAGCAA+AGG + chr8.2:13173606-13173625 MS.gene036711:CDS 40.0%
ACATCAAATGGTTTAGCTGG+TGG - chr8.2:13174370-13174389 None:intergenic 40.0%
ATACTTGCTTTCTTTGCTGG+AGG + chr8.2:13173965-13173984 MS.gene036711:CDS 40.0%
GAACTCTCTCTTGAGATATC+TGG - chr8.2:13173788-13173807 None:intergenic 40.0%
GATATCTCAAGAGAGAGTTC+AGG + chr8.2:13173788-13173807 MS.gene036711:CDS 40.0%
GATGCCGTAAATTGAACTCA+TGG - chr8.2:13173388-13173407 None:intergenic 40.0%
GGACCCATGAGTTCAATTTA+CGG + chr8.2:13173381-13173400 MS.gene036711:CDS 40.0%
TAACCTCGTAGGTTCATTTC+AGG - chr8.2:13173899-13173918 None:intergenic 40.0%
TACTTGCTTTCTTTGCTGGA+GGG + chr8.2:13173966-13173985 MS.gene036711:CDS 40.0%
TAGAACGATTATTGGGGTCT+TGG - chr8.2:13173946-13173965 None:intergenic 40.0%
TTATAGCCTCCACAAGTCTA+GGG - chr8.2:13174147-13174166 None:intergenic 40.0%
TTTATAGCCTCCACAAGTCT+AGG - chr8.2:13174148-13174167 None:intergenic 40.0%
! AAGTTTTGCTTGTGTCCTAG+TGG + chr8.2:13174106-13174125 MS.gene036711:CDS 40.0%
! AGTTCAATTTACGGCATCGA+GGG + chr8.2:13173390-13173409 MS.gene036711:CDS 40.0%
! ATCAAACCCTTCAGAAGTGT+TGG - chr8.2:13173855-13173874 None:intergenic 40.0%
!! GGCATTGAGACATCTCTTTT+AGG - chr8.2:13173878-13173897 None:intergenic 40.0%
ACTTGCTTTCTTTGCTGGAG+GGG + chr8.2:13173967-13173986 MS.gene036711:CDS 45.0%
AGCTCAACTTGTAACCTCGT+AGG - chr8.2:13173910-13173929 None:intergenic 45.0%
AGGTGGTGAGAGGATTGTAT+AGG - chr8.2:13173524-13173543 None:intergenic 45.0%
ATAAAGACATGAGCCTCACC+TGG - chr8.2:13173468-13173487 None:intergenic 45.0%
ATGCCTGAAATGAACCTACG+AGG + chr8.2:13173893-13173912 MS.gene036711:CDS 45.0%
CTAGCTACTTCATAGCCACT+AGG - chr8.2:13174124-13174143 None:intergenic 45.0%
CTTGTGGAGGCTATAAACAC+TGG + chr8.2:13174151-13174170 MS.gene036711:CDS 45.0%
GAACCACCATTAGTCCATGA+TGG + chr8.2:13173360-13173379 MS.gene036711:CDS 45.0%
GAGTTCAATTTACGGCATCG+AGG + chr8.2:13173389-13173408 MS.gene036711:CDS 45.0%
GCAATGCCAACACTTCTGAA+GGG + chr8.2:13173846-13173865 MS.gene036711:CDS 45.0%
TGCAATGCCAACACTTCTGA+AGG + chr8.2:13173845-13173864 MS.gene036711:CDS 45.0%
TTGAACTCATGGGTCCATCA+TGG - chr8.2:13173377-13173396 None:intergenic 45.0%
! ATGGGTCCATCATGGACTAA+TGG - chr8.2:13173369-13173388 None:intergenic 45.0%
!! CATGAGTTGATCCCTAGAGT+AGG - chr8.2:13173544-13173563 None:intergenic 45.0%
AGTAGCTAGCCCTAGACTTG+TGG + chr8.2:13174135-13174154 MS.gene036711:CDS 50.0%
ATCCTCTCACCACCTACTCT+AGG + chr8.2:13173529-13173548 MS.gene036711:CDS 50.0%
ATGAGCCTCACCTGGATTGT+GGG - chr8.2:13173460-13173479 None:intergenic 50.0%
CCTGGATTGTGGGTCGAAAA+TGG - chr8.2:13173450-13173469 None:intergenic 50.0%
CGATTATTGGGGTCTTGGCT+TGG - chr8.2:13173941-13173960 None:intergenic 50.0%
TCCTCTCACCACCTACTCTA+GGG + chr8.2:13173530-13173549 MS.gene036711:CDS 50.0%
TTCTTTGCTGGAGGGGAACA+TGG + chr8.2:13173974-13173993 MS.gene036711:CDS 50.0%
! CCATTTTCGACCCACAATCC+AGG + chr8.2:13173447-13173466 MS.gene036711:CDS 50.0%
! GAGTTGATCCCTAGAGTAGG+TGG - chr8.2:13173541-13173560 None:intergenic 50.0%
! GGTCCATCATGGACTAATGG+TGG - chr8.2:13173366-13173385 None:intergenic 50.0%
!! TTGGGGTCTTGGCTTGGAAT+TGG - chr8.2:13173935-13173954 None:intergenic 50.0%
AGCTAGCCCTAGACTTGTGG+AGG + chr8.2:13174138-13174157 MS.gene036711:CDS 55.0%
CATGAGCCTCACCTGGATTG+TGG - chr8.2:13173461-13173480 None:intergenic 55.0%
TCCCTAGAGTAGGTGGTGAG+AGG - chr8.2:13173534-13173553 None:intergenic 55.0%
TTCGACCCACAATCCAGGTG+AGG + chr8.2:13173452-13173471 MS.gene036711:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 13173321 13174450 13173321 ID=MS.gene036711
chr8.2 mRNA 13173321 13174450 13173321 ID=MS.gene036711.t1;Parent=MS.gene036711
chr8.2 exon 13173321 13173662 13173321 ID=MS.gene036711.t1.exon1;Parent=MS.gene036711.t1
chr8.2 CDS 13173321 13173662 13173321 ID=cds.MS.gene036711.t1;Parent=MS.gene036711.t1
chr8.2 exon 13173782 13174450 13173782 ID=MS.gene036711.t1.exon2;Parent=MS.gene036711.t1
chr8.2 CDS 13173782 13174450 13173782 ID=cds.MS.gene036711.t1;Parent=MS.gene036711.t1
Gene Sequence

>MS.gene036711

ATGTTGAAGAGATTCAAAGTGTGGACTTACAAAGAAGGTGAACCACCATTAGTCCATGATGGACCCATGAGTTCAATTTACGGCATCGAGGGACATTTCATGACTGAAATTGAGAATAGATTGAGTCCATTTTCGACCCACAATCCAGGTGAGGCTCATGTCTTTATGCTACCCTTAAGTGTTACAAACATCGTGCACTACCTATACAATCCTCTCACCACCTACTCTAGGGATCAACTCATGAATGTCACCATTGATTATACCAACATCATAGCTCACAAATATACATACTGGAATAGGAGCAAAGGAGCAGATCATTTGCTAGTATCTTGTCATGATTGGGTAACAATTGCCACCATACACCAAATGTTGAATATTTACTCATTTTAAAGACTAATGTGCTACTACTATATTGCTAGATCCTTACTTTTTAATGATGCATAGTAATTAATTTGTTGCAGGCACCAGATATCTCAAGAGAGAGTTCAGGCAAAGAGCTTTTCAAGAACTTAATAAGAGTGTTATGCAATGCCAACACTTCTGAAGGGTTTGATCCTAAAAGAGATGTCTCAATGCCTGAAATGAACCTACGAGGTTACAAGTTGAGCTCACCAATTCCAAGCCAAGACCCCAATAATCGTTCTATACTTGCTTTCTTTGCTGGAGGGGAACATGGTATGATTAGAAAGACATTACTAGATCATTGGAAAGGAAAAGATAAAGAAGTTCAAGTGTATGAATATCTTCCTAAAAACCTTGACTATTATAACTTCATGGGAAAAAGCAAGTTTTGCTTGTGTCCTAGTGGCTATGAAGTAGCTAGCCCTAGACTTGTGGAGGCTATAAACACTGGATGTGTCCCTGTGATTATTTCGGATAACTATCAATTGCCCTTTAGTGATGTTCTTGATTGGAGTAAATTTTCATTGCATATTCCATCAAAGAGGATAAGTGAAATCAAGACAATATTAAGAAGTGTTCCACATGCCAAATACTTGAAATTGCATAGGAGGGTGTTGAAAGTTCAAAGACATTTTGTGTTGAATCCACCAGCTAAACCATTTGATGTGTTCCATATGATTCTTCATTCAATATGGCTTAGAAGACTTAATATCAGGCTACCACTTTGA
Protein sequence

>MS.gene036711.t1

MLKRFKVWTYKEGEPPLVHDGPMSSIYGIEGHFMTEIENRLSPFSTHNPGEAHVFMLPLSVTNIVHYLYNPLTTYSRDQLMNVTIDYTNIIAHKYTYWNRSKGADHLLVSCHDWAPDISRESSGKELFKNLIRVLCNANTSEGFDPKRDVSMPEMNLRGYKLSSPIPSQDPNNRSILAFFAGGEHGMIRKTLLDHWKGKDKEVQVYEYLPKNLDYYNFMGKSKFCLCPSGYEVASPRLVEAINTGCVPVIISDNYQLPFSDVLDWSKFSLHIPSKRISEIKTILRSVPHAKYLKLHRRVLKVQRHFVLNPPAKPFDVFHMILHSIWLRRLNIRLPL