Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80794.t1 | XP_003616589.2 | 98.5 | 332 | 5 | 0 | 1 | 332 | 1 | 332 | 8.00E-192 | 679.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80794.t1 | Q9LY62 | 65.9 | 331 | 105 | 4 | 3 | 332 | 11 | 334 | 1.9e-125 | 450.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80794.t1 | G7KGW5 | 98.5 | 332 | 5 | 0 | 1 | 332 | 1 | 332 | 5.7e-192 | 679.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050076 | MS.gene80794 | -0.806075 | 9.81E-50 | -1.69E-46 |
MS.gene050353 | MS.gene80794 | 0.801731 | 7.84E-49 | -1.69E-46 |
MS.gene050432 | MS.gene80794 | -0.804308 | 2.30E-49 | -1.69E-46 |
MS.gene053632 | MS.gene80794 | -0.807717 | 4.41E-50 | -1.69E-46 |
MS.gene055499 | MS.gene80794 | -0.807287 | 5.44E-50 | -1.69E-46 |
MS.gene057129 | MS.gene80794 | -0.807479 | 4.95E-50 | -1.69E-46 |
MS.gene057295 | MS.gene80794 | -0.801858 | 7.38E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene80794 | MS.gene32658 | PPI |
MS.gene80794 | MS.gene036711 | PPI |
MS.gene80794 | MS.gene80232 | PPI |
MS.gene80794 | MS.gene014858 | PPI |
MS.gene80794 | MS.gene58030 | PPI |
MS.gene80794 | MS.gene072869 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80794.t1 | MTR_5g082110 | 98.494 | 332 | 5 | 0 | 1 | 332 | 1 | 332 | 0.0 | 679 |
MS.gene80794.t1 | MTR_5g082110 | 90.083 | 363 | 5 | 1 | 1 | 332 | 1 | 363 | 0.0 | 663 |
MS.gene80794.t1 | MTR_1g090920 | 33.193 | 238 | 131 | 6 | 85 | 314 | 538 | 755 | 1.47e-28 | 116 |
MS.gene80794.t1 | MTR_1g009180 | 32.567 | 261 | 147 | 9 | 81 | 326 | 28 | 274 | 6.05e-28 | 110 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80794.t1 | AT3G55830 | 67.372 | 331 | 100 | 4 | 3 | 332 | 11 | 334 | 2.29e-166 | 466 |
MS.gene80794.t1 | AT5G04500 | 30.000 | 240 | 136 | 6 | 85 | 314 | 532 | 749 | 1.08e-28 | 117 |
MS.gene80794.t1 | AT1G80290 | 31.022 | 274 | 157 | 9 | 73 | 326 | 49 | 310 | 1.11e-21 | 94.4 |
MS.gene80794.t1 | AT1G80290 | 31.022 | 274 | 157 | 9 | 73 | 326 | 57 | 318 | 1.37e-21 | 94.0 |
Find 76 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAACAGATTTAAAGAAATTA+AGG | 0.205656 | 5.3:+66450545 | MS.gene80794:CDS |
CTGGTTCAAGTTTCTTATTA+TGG | 0.206659 | 5.3:+66448917 | MS.gene80794:CDS |
TGGTTCAAGTTTCTTATTAT+GGG | 0.278026 | 5.3:+66448918 | MS.gene80794:CDS |
GAACCTTGAATCAGTGAAAC+TGG | 0.317353 | 5.3:-66448968 | None:intergenic |
ATCAACTGGAATTAGTAGTT+TGG | 0.324045 | 5.3:+66452709 | MS.gene80794:CDS |
CTTGATCTTGGCTGATTTAA+CGG | 0.328719 | 5.3:-66448845 | None:intergenic |
TGGAATTCGCATTTGATGTT+TGG | 0.335175 | 5.3:+66450628 | MS.gene80794:CDS |
ATATCGTCCGTCTCTAGATT+TGG | 0.345844 | 5.3:-66450481 | None:intergenic |
AACCTATTTACTTCTGTGTA+TGG | 0.359210 | 5.3:+66452764 | MS.gene80794:CDS |
ATATATGAGATTGGATCAAC+TGG | 0.362340 | 5.3:+66452695 | MS.gene80794:CDS |
AATTACCTTTAACCCATAAC+GGG | 0.378032 | 5.3:-66451724 | None:intergenic |
TCAACTGGAATTAGTAGTTT+GGG | 0.396190 | 5.3:+66452710 | MS.gene80794:CDS |
GAGAATTTGTAACTAAGAAC+AGG | 0.400975 | 5.3:+66451530 | MS.gene80794:CDS |
GCCCATACACAGAAGTAAAT+AGG | 0.401306 | 5.3:-66452766 | None:intergenic |
AGACTTTCTGATGGAGGATT+GGG | 0.401771 | 5.3:-66450429 | None:intergenic |
TTTCTTGTCGCAAATGCAAC+TGG | 0.403236 | 5.3:+66451695 | MS.gene80794:CDS |
TGGTGGTCTGTGTGGTGGAC+GGG | 0.410126 | 5.3:+66451421 | MS.gene80794:CDS |
AAGACTTTCTGATGGAGGAT+TGG | 0.418259 | 5.3:-66450430 | None:intergenic |
GTCGGATTGAACAGAGGTTT+CGG | 0.421732 | 5.3:+66448806 | MS.gene80794:CDS |
AAATTACCTTTAACCCATAA+CGG | 0.425637 | 5.3:-66451725 | None:intergenic |
TGCGAATTCCACCGAAGAGC+AGG | 0.435917 | 5.3:-66450616 | None:intergenic |
ATATAGCATGGTGCTCTCTA+AGG | 0.440035 | 5.3:+66451447 | MS.gene80794:CDS |
AAATAACAGAAGCTTGATCT+TGG | 0.452251 | 5.3:-66448857 | None:intergenic |
ATAGTCGCAATGTCTGGTTT+TGG | 0.454922 | 5.3:+66452825 | MS.gene80794:CDS |
TGTCCATTGGTTAGATTCGT+TGG | 0.458659 | 5.3:+66450689 | MS.gene80794:CDS |
ACAGGTAAAATATATGAGAT+TGG | 0.461138 | 5.3:+66452686 | MS.gene80794:intron |
GACAACAACAAATTTAGATA+TGG | 0.462661 | 5.3:+66451394 | MS.gene80794:CDS |
ATGGTGGTCTGTGTGGTGGA+CGG | 0.464395 | 5.3:+66451420 | MS.gene80794:CDS |
TGTCATATTTCCCTGCTCTT+CGG | 0.466320 | 5.3:+66450605 | MS.gene80794:CDS |
TTTCACTGACGTATATACTA+AGG | 0.468030 | 5.3:-66452795 | None:intergenic |
CCGTTGATAGTCGCAATGTC+TGG | 0.468930 | 5.3:+66452819 | MS.gene80794:CDS |
TTCCCAGTTTCACTGATTCA+AGG | 0.472796 | 5.3:+66448965 | MS.gene80794:CDS |
ACAAATTCTCTAATTGATGA+TGG | 0.477812 | 5.3:-66451517 | None:intergenic |
ACCTATTTACTTCTGTGTAT+GGG | 0.504941 | 5.3:+66452765 | MS.gene80794:CDS |
ACAAATCCCACCATTGCATC+CGG | 0.508793 | 5.3:-66450660 | None:intergenic |
TCAGTGAAACTGGGAATTTG+AGG | 0.510055 | 5.3:-66448958 | None:intergenic |
CATATTTCCCTGCTCTTCGG+TGG | 0.522551 | 5.3:+66450608 | MS.gene80794:CDS |
GATTTGTACCTCGTGTCCAT+TGG | 0.522707 | 5.3:+66450676 | MS.gene80794:CDS |
TGATGTTTGGCAAAGTGCAC+CGG | 0.530100 | 5.3:+66450641 | MS.gene80794:CDS |
GGAGCTGTTGGTTGAACCGT+CGG | 0.530590 | 5.3:+66448788 | MS.gene80794:CDS |
CAGTGAAACTGGGAATTTGA+GGG | 0.535082 | 5.3:-66448957 | None:intergenic |
AACAACAAATTTAGATATGG+TGG | 0.541211 | 5.3:+66451397 | MS.gene80794:CDS |
AAGTGCACCGGATGCAATGG+TGG | 0.544682 | 5.3:+66450653 | MS.gene80794:CDS |
TTTAGAAGACTTTCTGATGG+AGG | 0.564085 | 5.3:-66450435 | None:intergenic |
CCAGACATTGCGACTATCAA+CGG | 0.564873 | 5.3:-66452819 | None:intergenic |
ATGGTGGATGGTGGTCTGTG+TGG | 0.564923 | 5.3:+66451413 | MS.gene80794:CDS |
GTGGATGGTGGTCTGTGTGG+TGG | 0.565684 | 5.3:+66451416 | MS.gene80794:CDS |
ACGGACGATATGTGAAGTTG+AGG | 0.586320 | 5.3:+66450493 | MS.gene80794:CDS |
TATTAGCGGCGGTGATGAGA+GGG | 0.587978 | 5.3:+66448767 | None:intergenic |
CGGTGATGAGAGGGAGCTGT+TGG | 0.589133 | 5.3:+66448776 | None:intergenic |
TTATTAGCGGCGGTGATGAG+AGG | 0.597155 | 5.3:+66448766 | None:intergenic |
TTCACTGACGTATATACTAA+GGG | 0.597837 | 5.3:-66452794 | None:intergenic |
ACAAATTTAGATATGGTGGA+TGG | 0.602492 | 5.3:+66451401 | MS.gene80794:CDS |
ATACCAACGAATCTAACCAA+TGG | 0.611009 | 5.3:-66450692 | None:intergenic |
GCGAATTCCACCGAAGAGCA+GGG | 0.618715 | 5.3:-66450615 | None:intergenic |
GTTTGGGAGGTCATAGTGAA+CGG | 0.624381 | 5.3:+66452726 | MS.gene80794:CDS |
TATTTACTTCTGTGTATGGG+CGG | 0.627886 | 5.3:+66452768 | MS.gene80794:CDS |
TTGAGTCAGTACATATTGTG+TGG | 0.629828 | 5.3:+66450400 | MS.gene80794:CDS |
AACCTTGAATCAGTGAAACT+GGG | 0.631242 | 5.3:-66448967 | None:intergenic |
ACTGGAATTAGTAGTTTGGG+AGG | 0.632754 | 5.3:+66452713 | MS.gene80794:CDS |
GCAAAGTGCACCGGATGCAA+TGG | 0.638093 | 5.3:+66450650 | MS.gene80794:CDS |
ATTACCTTTAACCCATAACG+GGG | 0.639745 | 5.3:-66451723 | None:intergenic |
AGTGCACCGGATGCAATGGT+GGG | 0.640002 | 5.3:+66450654 | MS.gene80794:CDS |
AATTTAGATATGGTGGATGG+TGG | 0.653603 | 5.3:+66451404 | MS.gene80794:CDS |
GATCTTGGCTGATTTAACGG+TGG | 0.667058 | 5.3:-66448842 | None:intergenic |
TGAACCGTCGGATTGAACAG+AGG | 0.670462 | 5.3:+66448800 | MS.gene80794:CDS |
ATATGTACTGACTCAAGTCG+AGG | 0.675049 | 5.3:-66450393 | None:intergenic |
AGTGAAACTGGGAATTTGAG+GGG | 0.676257 | 5.3:-66448956 | None:intergenic |
GTAAAGTCCAAATCTAGAGA+CGG | 0.683801 | 5.3:+66450474 | MS.gene80794:CDS |
GAAACCTCTGTTCAATCCGA+CGG | 0.684402 | 5.3:-66448804 | None:intergenic |
GAATCTAACCAATGGACACG+AGG | 0.709906 | 5.3:-66450684 | None:intergenic |
ATTCTATTGTAATGAACACG+TGG | 0.719028 | 5.3:+66450322 | MS.gene80794:CDS |
GTTGAGGTTTGATATCAACA+CGG | 0.722201 | 5.3:+66450509 | MS.gene80794:CDS |
TTACCTTTAACCCATAACGG+GGG | 0.745725 | 5.3:-66451722 | None:intergenic |
GTGGACGGGTACATATAGCA+TGG | 0.778264 | 5.3:+66451435 | MS.gene80794:CDS |
TAGATTTGGACTTTACAACG+TGG | 0.788272 | 5.3:-66450467 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAATTAGATGTT+TGG | - | chr5.3:66450047-66450066 | None:intergenic | 10.0% |
!! | AAATAAATAAAAAATTAGCA+GGG | - | chr5.3:66451578-66451597 | None:intergenic | 10.0% |
!! | ATATGTTTATCTTATAATTA+AGG | + | chr5.3:66452248-66452267 | MS.gene80794:intron | 10.0% |
!! | TAAATAAATAAAAAATTAGC+AGG | - | chr5.3:66451579-66451598 | None:intergenic | 10.0% |
!! | TTAAAAAAAAAAAACTTGTA+AGG | + | chr5.3:66451333-66451352 | MS.gene80794:intron | 10.0% |
!! | TTATGTTTAGTATTTAAATT+TGG | + | chr5.3:66449377-66449396 | MS.gene80794:intron | 10.0% |
!!! | GAAAATACAAAATTTATTTT+TGG | + | chr5.3:66449105-66449124 | MS.gene80794:intron | 10.0% |
!! | AATAAATAAAAAATTAGCAG+GGG | - | chr5.3:66451577-66451596 | None:intergenic | 15.0% |
!! | ATAGGAAATATAAATAGAAA+GGG | + | chr5.3:66449269-66449288 | MS.gene80794:intron | 15.0% |
!! | GAAGTGAATTTATATATATT+TGG | + | chr5.3:66449895-66449914 | MS.gene80794:intron | 15.0% |
!! | TAACAGATTTAAAGAAATTA+AGG | + | chr5.3:66450545-66450564 | MS.gene80794:CDS | 15.0% |
!! | TTATTGATCAAATAACAAAA+TGG | - | chr5.3:66451633-66451652 | None:intergenic | 15.0% |
!!! | AATACAAAATTTATTTTTGG+TGG | + | chr5.3:66449108-66449127 | MS.gene80794:intron | 15.0% |
!!! | ATACAAAATTTATTTTTGGT+GGG | + | chr5.3:66449109-66449128 | MS.gene80794:intron | 15.0% |
!!! | TTAATTTGAAGAGTAAAATA+GGG | + | chr5.3:66449345-66449364 | MS.gene80794:intron | 15.0% |
!!! | TTTAATTTGAAGAGTAAAAT+AGG | + | chr5.3:66449344-66449363 | MS.gene80794:intron | 15.0% |
!! | AATAATTCAAATGATTTACC+AGG | + | chr5.3:66451648-66451667 | MS.gene80794:intron | 20.0% |
!! | ATAAATAAAAAATTAGCAGG+GGG | - | chr5.3:66451576-66451595 | None:intergenic | 20.0% |
!! | CAAAAAAAAATTAAAAGTCC+AGG | - | chr5.3:66449722-66449741 | None:intergenic | 20.0% |
!! | CATAGGAAATATAAATAGAA+AGG | + | chr5.3:66449268-66449287 | MS.gene80794:intron | 20.0% |
!! | CGTTCAATAATTAAAAGATA+CGG | - | chr5.3:66451758-66451777 | None:intergenic | 20.0% |
!! | CTTAAAAGGTAAATACTATT+GGG | - | chr5.3:66450947-66450966 | None:intergenic | 20.0% |
!! | GAATTTCTATATATGTGTTT+GGG | + | chr5.3:66449195-66449214 | MS.gene80794:intron | 20.0% |
!! | GGTTTCAAAAATAAATTTCA+TGG | - | chr5.3:66452394-66452413 | None:intergenic | 20.0% |
!! | TAATTAAGGAAGTTAAAGTA+TGG | + | chr5.3:66452262-66452281 | MS.gene80794:intron | 20.0% |
!! | TATATATGATGTTTACATTG+TGG | + | chr5.3:66452649-66452668 | MS.gene80794:intron | 20.0% |
!! | TCTTAAAAGGTAAATACTAT+TGG | - | chr5.3:66450948-66450967 | None:intergenic | 20.0% |
!! | TGATTATGTATGATTTGATT+TGG | + | chr5.3:66449858-66449877 | MS.gene80794:intron | 20.0% |
!! | TTAAAAGGTAAATACTATTG+GGG | - | chr5.3:66450946-66450965 | None:intergenic | 20.0% |
!!! | AAGGGATTTTGTATATAATA+AGG | + | chr5.3:66449287-66449306 | MS.gene80794:intron | 20.0% |
!!! | ACATTTGTAAGATTGATTTA+TGG | + | chr5.3:66451887-66451906 | MS.gene80794:intron | 20.0% |
!!! | AGTTTTGTAGTTTCTATTTT+AGG | + | chr5.3:66449063-66449082 | MS.gene80794:intron | 20.0% |
!!! | ATATATTTTACCTGTAACAA+AGG | - | chr5.3:66452681-66452700 | None:intergenic | 20.0% |
!!! | CGTATCTTTTAATTATTGAA+CGG | + | chr5.3:66451756-66451775 | MS.gene80794:intron | 20.0% |
!!! | CTAAAATTTTACATTGAACT+TGG | - | chr5.3:66449938-66449957 | None:intergenic | 20.0% |
!!! | CTGGACTTTTAATTTTTTTT+TGG | + | chr5.3:66449720-66449739 | MS.gene80794:intron | 20.0% |
!!! | GTATCTTTTAATTATTGAAC+GGG | + | chr5.3:66451757-66451776 | MS.gene80794:intron | 20.0% |
!!! | GTCATTTTCTCAAATATTAT+TGG | + | chr5.3:66449575-66449594 | MS.gene80794:intron | 20.0% |
!!! | GTTTTGTAGTTTCTATTTTA+GGG | + | chr5.3:66449064-66449083 | MS.gene80794:intron | 20.0% |
!!! | TTTCATGCTTAATTTTGAAA+TGG | - | chr5.3:66451026-66451045 | None:intergenic | 20.0% |
!!! | TTTGGAATGAATATATAACA+AGG | + | chr5.3:66449395-66449414 | MS.gene80794:intron | 20.0% |
!!! | TTTTGTTCAAATTTGTATAC+TGG | + | chr5.3:66449681-66449700 | MS.gene80794:intron | 20.0% |
!!! | TTTTTTTGTTTGTTTTGCAT+AGG | + | chr5.3:66449251-66449270 | MS.gene80794:intron | 20.0% |
! | AAAGTTATAGCAATAGCAAA+AGG | + | chr5.3:66452089-66452108 | MS.gene80794:intron | 25.0% |
! | AAATTACCTTTAACCCATAA+CGG | - | chr5.3:66451728-66451747 | None:intergenic | 25.0% |
! | AACAACAAATTTAGATATGG+TGG | + | chr5.3:66451397-66451416 | MS.gene80794:CDS | 25.0% |
! | AAGAGATAAAAAGTAGATCT+TGG | - | chr5.3:66449976-66449995 | None:intergenic | 25.0% |
! | AATGTGTAGTCAAAATATCA+AGG | - | chr5.3:66450764-66450783 | None:intergenic | 25.0% |
! | ACAAATTCTCTAATTGATGA+TGG | - | chr5.3:66451520-66451539 | None:intergenic | 25.0% |
! | ACAGGTAAAATATATGAGAT+TGG | + | chr5.3:66452686-66452705 | MS.gene80794:intron | 25.0% |
! | ACTAATCATGTATCATTCAT+TGG | - | chr5.3:66451920-66451939 | None:intergenic | 25.0% |
! | AGAGATAAAAAGTAGATCTT+GGG | - | chr5.3:66449975-66449994 | None:intergenic | 25.0% |
! | ATATCTATGAAGCATAGATA+CGG | - | chr5.3:66449630-66449649 | None:intergenic | 25.0% |
! | CAATGAAGAATATGAAAATG+TGG | - | chr5.3:66451969-66451988 | None:intergenic | 25.0% |
! | GACAACAACAAATTTAGATA+TGG | + | chr5.3:66451394-66451413 | MS.gene80794:CDS | 25.0% |
! | GGAATTTCTATATATGTGTT+TGG | + | chr5.3:66449194-66449213 | MS.gene80794:intron | 25.0% |
! | GTTGGAAAAATACAAAGTTT+CGG | + | chr5.3:66449161-66449180 | MS.gene80794:intron | 25.0% |
! | GTTTAAATTCATGATTGAGA+GGG | - | chr5.3:66450107-66450126 | None:intergenic | 25.0% |
! | TCAAGGATAATTGAAAATCA+TGG | - | chr5.3:66450747-66450766 | None:intergenic | 25.0% |
! | TCTCAATCATGAATTTAAAC+AGG | + | chr5.3:66450107-66450126 | MS.gene80794:intron | 25.0% |
! | TGAATGATACATGATTAGTA+TGG | + | chr5.3:66451921-66451940 | MS.gene80794:intron | 25.0% |
! | TGATCAAATAACAAAATGGT+TGG | - | chr5.3:66451629-66451648 | None:intergenic | 25.0% |
! | TGTAATTATATGTGTCATGT+TGG | - | chr5.3:66449546-66449565 | None:intergenic | 25.0% |
! | TGTGAATAACTAATTAAGCT+TGG | + | chr5.3:66450829-66450848 | MS.gene80794:intron | 25.0% |
! | TGTTTAAATTCATGATTGAG+AGG | - | chr5.3:66450108-66450127 | None:intergenic | 25.0% |
! | TTGCAAAACTACATCTTAAA+AGG | - | chr5.3:66450961-66450980 | None:intergenic | 25.0% |
!! | ATAAACAACAATTAGTTCTC+TGG | - | chr5.3:66450281-66450300 | None:intergenic | 25.0% |
!! | CACATTTTCATATTCTTCAT+TGG | + | chr5.3:66451967-66451986 | MS.gene80794:intron | 25.0% |
!! | TATCGTGATTTCATTTGTTT+TGG | + | chr5.3:66452352-66452371 | MS.gene80794:intron | 25.0% |
!! | TGGATAATTTAGTGTGTTTT+TGG | + | chr5.3:66449803-66449822 | MS.gene80794:intron | 25.0% |
!! | TGGTTCAAGTTTCTTATTAT+GGG | + | chr5.3:66448918-66448937 | MS.gene80794:CDS | 25.0% |
!!! | CAAAGTTTCGGTTTTTTTTA+TGG | + | chr5.3:66449173-66449192 | MS.gene80794:intron | 25.0% |
!!! | GTGCTATTTTTGTTGTTTTA+TGG | - | chr5.3:66451057-66451076 | None:intergenic | 25.0% |
!!! | TATTTTAGAAGACTTTCTGA+TGG | - | chr5.3:66450441-66450460 | None:intergenic | 25.0% |
!!! | TGGAAATGTTTTTTTGTTGT+TGG | + | chr5.3:66449143-66449162 | MS.gene80794:intron | 25.0% |
!!! | TTGATTTGTATTACCATGAT+GGG | - | chr5.3:66452535-66452554 | None:intergenic | 25.0% |
!!! | TTTGATTTGTATTACCATGA+TGG | - | chr5.3:66452536-66452555 | None:intergenic | 25.0% |
!!! | TTTGTTGTTTTATGGCAATA+AGG | - | chr5.3:66451049-66451068 | None:intergenic | 25.0% |
AAATAACAGAAGCTTGATCT+TGG | - | chr5.3:66448860-66448879 | None:intergenic | 30.0% | |
AACTGAAAGGTAAAGAAAGT+TGG | + | chr5.3:66451165-66451184 | MS.gene80794:intron | 30.0% | |
AATAAAGGAACAAGAAGTCA+AGG | - | chr5.3:66452141-66452160 | None:intergenic | 30.0% | |
AATTACCTTTAACCCATAAC+GGG | - | chr5.3:66451727-66451746 | None:intergenic | 30.0% | |
ACTAATTGCTTCAATGTACA+GGG | - | chr5.3:66452167-66452186 | None:intergenic | 30.0% | |
AGATTATACAAAGCCTAACA+AGG | - | chr5.3:66452466-66452485 | None:intergenic | 30.0% | |
AGTGATCATTTGATCAACTA+CGG | + | chr5.3:66449754-66449773 | MS.gene80794:intron | 30.0% | |
ATATATGAGATTGGATCAAC+TGG | + | chr5.3:66452695-66452714 | MS.gene80794:CDS | 30.0% | |
ATCAACTGGAATTAGTAGTT+TGG | + | chr5.3:66452709-66452728 | MS.gene80794:CDS | 30.0% | |
ATTCTATTGTAATGAACACG+TGG | + | chr5.3:66450322-66450341 | MS.gene80794:CDS | 30.0% | |
CAATCTTACAAATGTCAGAA+AGG | - | chr5.3:66451882-66451901 | None:intergenic | 30.0% | |
CATAAAACCTAACATTAGCA+TGG | - | chr5.3:66452509-66452528 | None:intergenic | 30.0% | |
GAGAATTTGTAACTAAGAAC+AGG | + | chr5.3:66451530-66451549 | MS.gene80794:CDS | 30.0% | |
GCATACTATTGTGAAACATA+TGG | + | chr5.3:66450991-66451010 | MS.gene80794:intron | 30.0% | |
GTAAATACTATTGGGGATTA+TGG | - | chr5.3:66450939-66450958 | None:intergenic | 30.0% | |
GTTGTTTATTCTTTGTTCAC+AGG | + | chr5.3:66450292-66450311 | MS.gene80794:intron | 30.0% | |
TACTAATTGCTTCAATGTAC+AGG | - | chr5.3:66452168-66452187 | None:intergenic | 30.0% | |
TATGAAGCATATATACTCCT+CGG | + | chr5.3:66449479-66449498 | MS.gene80794:intron | 30.0% | |
TATTCAATGTTCTTGCAGAA+TGG | + | chr5.3:66451370-66451389 | MS.gene80794:intron | 30.0% | |
TCAACTGGAATTAGTAGTTT+GGG | + | chr5.3:66452710-66452729 | MS.gene80794:CDS | 30.0% | |
TGAAGAGTAAAATAGGGAAA+TGG | + | chr5.3:66449351-66449370 | MS.gene80794:intron | 30.0% | |
TGCAAGAACATTGAATAACT+TGG | - | chr5.3:66451367-66451386 | None:intergenic | 30.0% | |
TTACATTGAACTTGGTTTCA+GGG | - | chr5.3:66449930-66449949 | None:intergenic | 30.0% | |
TTATTCTTTGTTCACAGGAA+AGG | + | chr5.3:66450297-66450316 | MS.gene80794:intron | 30.0% | |
TTCACTGACGTATATACTAA+GGG | - | chr5.3:66452797-66452816 | None:intergenic | 30.0% | |
TTTACATTGAACTTGGTTTC+AGG | - | chr5.3:66449931-66449950 | None:intergenic | 30.0% | |
TTTCACTGACGTATATACTA+AGG | - | chr5.3:66452798-66452817 | None:intergenic | 30.0% | |
! | ACAAATTTAGATATGGTGGA+TGG | + | chr5.3:66451401-66451420 | MS.gene80794:CDS | 30.0% |
! | CTGGTTCAAGTTTCTTATTA+TGG | + | chr5.3:66448917-66448936 | MS.gene80794:CDS | 30.0% |
! | TATAGATTGTAACGAGCTTT+TGG | + | chr5.3:66449432-66449451 | MS.gene80794:intron | 30.0% |
! | TTTGGTGGGAAATTCTTTTA+TGG | + | chr5.3:66449123-66449142 | MS.gene80794:intron | 30.0% |
!! | GTTTTATTGCCTTGATTTGA+AGG | + | chr5.3:66449309-66449328 | MS.gene80794:intron | 30.0% |
!!! | TTTTATTTTCATGAGTGCTG+AGG | + | chr5.3:66450238-66450257 | MS.gene80794:intron | 30.0% |
AAATCAAACATTGCTCTCGT+TGG | + | chr5.3:66452548-66452567 | MS.gene80794:intron | 35.0% | |
AACACCATCTAATCCAAAGA+AGG | - | chr5.3:66452047-66452066 | None:intergenic | 35.0% | |
AACCTTGAATCAGTGAAACT+GGG | - | chr5.3:66448970-66448989 | None:intergenic | 35.0% | |
AACTAATTAAGCTTGGAGCA+GGG | + | chr5.3:66450836-66450855 | MS.gene80794:intron | 35.0% | |
AATGTCAGAAAGGAGAAAGA+CGG | - | chr5.3:66451872-66451891 | None:intergenic | 35.0% | |
ACACATGCATCTTCTTTGTA+TGG | - | chr5.3:66452600-66452619 | None:intergenic | 35.0% | |
AGGTCCTCATATAACAATGA+GGG | - | chr5.3:66451120-66451139 | None:intergenic | 35.0% | |
ATACCAACGAATCTAACCAA+TGG | - | chr5.3:66450695-66450714 | None:intergenic | 35.0% | |
ATTACCTTTAACCCATAACG+GGG | - | chr5.3:66451726-66451745 | None:intergenic | 35.0% | |
ATTTGATCAACTACGGAGTT+CGG | + | chr5.3:66449761-66449780 | MS.gene80794:intron | 35.0% | |
CAATGTACAGGGTGTAATAA+AGG | - | chr5.3:66452156-66452175 | None:intergenic | 35.0% | |
CACAACAAGGACAAAATAAC+AGG | - | chr5.3:66451140-66451159 | None:intergenic | 35.0% | |
CACATGCATCTTCTTTGTAT+GGG | - | chr5.3:66452599-66452618 | None:intergenic | 35.0% | |
CTTTCAAAGTTAACTTACCC+TGG | + | chr5.3:66450166-66450185 | MS.gene80794:intron | 35.0% | |
GAAAACATGCTATGATAGCT+AGG | - | chr5.3:66452329-66452348 | None:intergenic | 35.0% | |
GTAAAGTCCAAATCTAGAGA+CGG | + | chr5.3:66450474-66450493 | MS.gene80794:CDS | 35.0% | |
GTAGTTGATCAAATGATCAC+TGG | - | chr5.3:66449755-66449774 | None:intergenic | 35.0% | |
GTTAGATTCGTTGGTATGTA+TGG | + | chr5.3:66450698-66450717 | MS.gene80794:intron | 35.0% | |
GTTGAGGTTTGATATCAACA+CGG | + | chr5.3:66450509-66450528 | MS.gene80794:CDS | 35.0% | |
TAACTAATTAAGCTTGGAGC+AGG | + | chr5.3:66450835-66450854 | MS.gene80794:intron | 35.0% | |
TAGATTTGGACTTTACAACG+TGG | - | chr5.3:66450470-66450489 | None:intergenic | 35.0% | |
TAGCACTAACCTTCAAATCA+AGG | - | chr5.3:66449321-66449340 | None:intergenic | 35.0% | |
TAGCAGTTCAAACAAAGAAC+AGG | - | chr5.3:66450899-66450918 | None:intergenic | 35.0% | |
TATCTCTCTGATCTGAACAT+GGG | - | chr5.3:66451307-66451326 | None:intergenic | 35.0% | |
TGAAGTTCCATGCTAATGTT+AGG | + | chr5.3:66452499-66452518 | MS.gene80794:intron | 35.0% | |
TGCAATATCTTCACAATTCC+TGG | - | chr5.3:66451669-66451688 | None:intergenic | 35.0% | |
TGGAATTCGCATTTGATGTT+TGG | + | chr5.3:66450628-66450647 | MS.gene80794:CDS | 35.0% | |
TTATCTCTCTGATCTGAACA+TGG | - | chr5.3:66451308-66451327 | None:intergenic | 35.0% | |
TTGAGTCAGTACATATTGTG+TGG | + | chr5.3:66450400-66450419 | MS.gene80794:CDS | 35.0% | |
TTGGGACTAAGATTCTGTTT+GGG | + | chr5.3:66449213-66449232 | MS.gene80794:intron | 35.0% | |
TTGTTGTGGATCTAACTGAA+AGG | + | chr5.3:66451152-66451171 | MS.gene80794:intron | 35.0% | |
TTTAGAAGACTTTCTGATGG+AGG | - | chr5.3:66450438-66450457 | None:intergenic | 35.0% | |
TTTCAGTTAGATCCACAACA+AGG | - | chr5.3:66451153-66451172 | None:intergenic | 35.0% | |
! | CTTGATCTTGGCTGATTTAA+CGG | - | chr5.3:66448848-66448867 | None:intergenic | 35.0% |
! | TACTTTTATGCCTCTGCTTT+TGG | + | chr5.3:66450786-66450805 | MS.gene80794:intron | 35.0% |
! | TTTGGGACTAAGATTCTGTT+TGG | + | chr5.3:66449212-66449231 | MS.gene80794:intron | 35.0% |
!! | AATTTAGATATGGTGGATGG+TGG | + | chr5.3:66451404-66451423 | MS.gene80794:CDS | 35.0% |
!!! | CTGTTATTTTGTCCTTGTTG+TGG | + | chr5.3:66451138-66451157 | MS.gene80794:intron | 35.0% |
!!! | TGTTTTAGTTCCAAAAGCAG+AGG | - | chr5.3:66450799-66450818 | None:intergenic | 35.0% |
AAGACTTTCTGATGGAGGAT+TGG | - | chr5.3:66450433-66450452 | None:intergenic | 40.0% | |
ACAACTTGTCGCAAAACACT+GGG | - | chr5.3:66452430-66452449 | None:intergenic | 40.0% | |
ACCATCTAATCCAAAGAAGG+AGG | - | chr5.3:66452044-66452063 | None:intergenic | 40.0% | |
ACTAGCAGCTACTTAAAGCA+TGG | - | chr5.3:66451213-66451232 | None:intergenic | 40.0% | |
ACTGGAATTAGTAGTTTGGG+AGG | + | chr5.3:66452713-66452732 | MS.gene80794:CDS | 40.0% | |
AGACTTTCTGATGGAGGATT+GGG | - | chr5.3:66450432-66450451 | None:intergenic | 40.0% | |
AGTGAAACTGGGAATTTGAG+GGG | - | chr5.3:66448959-66448978 | None:intergenic | 40.0% | |
ATACGATACATATCCGACAC+CGG | - | chr5.3:66449517-66449536 | None:intergenic | 40.0% | |
ATATAGCATGGTGCTCTCTA+AGG | + | chr5.3:66451447-66451466 | MS.gene80794:CDS | 40.0% | |
ATATCGTCCGTCTCTAGATT+TGG | - | chr5.3:66450484-66450503 | None:intergenic | 40.0% | |
ATCTAATCCAAAGAAGGAGG+GGG | - | chr5.3:66452041-66452060 | None:intergenic | 40.0% | |
ATGGGCGACATGTATTAACA+TGG | - | chr5.3:66452581-66452600 | None:intergenic | 40.0% | |
ATGTCAGAAAGGAGAAAGAC+GGG | - | chr5.3:66451871-66451890 | None:intergenic | 40.0% | |
CAGGTCCTCATATAACAATG+AGG | - | chr5.3:66451121-66451140 | None:intergenic | 40.0% | |
CAGTGAAACTGGGAATTTGA+GGG | - | chr5.3:66448960-66448979 | None:intergenic | 40.0% | |
CATCTAATCCAAAGAAGGAG+GGG | - | chr5.3:66452042-66452061 | None:intergenic | 40.0% | |
CCATCTAATCCAAAGAAGGA+GGG | - | chr5.3:66452043-66452062 | None:intergenic | 40.0% | |
CCTCATATAACAATGAGGGT+CGG | - | chr5.3:66451116-66451135 | None:intergenic | 40.0% | |
CTAGGCATCATTGCACAATT+TGG | - | chr5.3:66452311-66452330 | None:intergenic | 40.0% | |
GAACCTTGAATCAGTGAAAC+TGG | - | chr5.3:66448971-66448990 | None:intergenic | 40.0% | |
GAGGAACTTCTGAACTAAAC+AGG | - | chr5.3:66451812-66451831 | None:intergenic | 40.0% | |
GAGGGAAACAAAACAGAATC+TGG | + | chr5.3:66450194-66450213 | MS.gene80794:intron | 40.0% | |
GATCAGTAATTCGTAGCTGA+TGG | + | chr5.3:66449783-66449802 | MS.gene80794:intron | 40.0% | |
GCATATATACTCCTCGGATT+AGG | + | chr5.3:66449485-66449504 | MS.gene80794:intron | 40.0% | |
TAACTTACCCTGGAATCAGA+GGG | + | chr5.3:66450176-66450195 | MS.gene80794:intron | 40.0% | |
TCAGTGAAACTGGGAATTTG+AGG | - | chr5.3:66448961-66448980 | None:intergenic | 40.0% | |
TGGAAGTAGAAACGATTACC+TGG | + | chr5.3:66449701-66449720 | MS.gene80794:intron | 40.0% | |
TGTCATATTTCCCTGCTCTT+CGG | + | chr5.3:66450605-66450624 | MS.gene80794:CDS | 40.0% | |
TTAACTTACCCTGGAATCAG+AGG | + | chr5.3:66450175-66450194 | MS.gene80794:intron | 40.0% | |
TTACCTTTAACCCATAACGG+GGG | - | chr5.3:66451725-66451744 | None:intergenic | 40.0% | |
TTTCTTGTCGCAAATGCAAC+TGG | + | chr5.3:66451695-66451714 | MS.gene80794:CDS | 40.0% | |
TTTGTTTCCCTCTGATTCCA+GGG | - | chr5.3:66450186-66450205 | None:intergenic | 40.0% | |
! | GACTCTTTTGTTCCTTTCTG+TGG | + | chr5.3:66452284-66452303 | MS.gene80794:intron | 40.0% |
! | GTGGATTTTGCCTTTGTTAC+AGG | + | chr5.3:66452668-66452687 | MS.gene80794:intron | 40.0% |
! | TGTCCATTGGTTAGATTCGT+TGG | + | chr5.3:66450689-66450708 | MS.gene80794:CDS | 40.0% |
!! | ATAGTCGCAATGTCTGGTTT+TGG | + | chr5.3:66452825-66452844 | MS.gene80794:CDS | 40.0% |
!! | ATATGTACTGACTCAAGTCG+AGG | - | chr5.3:66450396-66450415 | None:intergenic | 40.0% |
!! | GTTTTGAGCTAGTGAAGTTG+AGG | - | chr5.3:66451831-66451850 | None:intergenic | 40.0% |
!! | TTCCCAGTTTCACTGATTCA+AGG | + | chr5.3:66448965-66448984 | MS.gene80794:CDS | 40.0% |
!! | TTGTAACGAGCTTTTGGTGT+TGG | + | chr5.3:66449438-66449457 | MS.gene80794:intron | 40.0% |
!! | TTTTGTTTCCCTCTGATTCC+AGG | - | chr5.3:66450187-66450206 | None:intergenic | 40.0% |
!!! | AGTGTGTTTTTGGTCAGTGT+TGG | + | chr5.3:66449813-66449832 | MS.gene80794:intron | 40.0% |
!!! | GCTTTTGGTGTTGGGAATTT+TGG | + | chr5.3:66449447-66449466 | MS.gene80794:intron | 40.0% |
!!! | GTGTGTTTTTGGTCAGTGTT+GGG | + | chr5.3:66449814-66449833 | MS.gene80794:intron | 40.0% |
!!! | TGTAACGAGCTTTTGGTGTT+GGG | + | chr5.3:66449439-66449458 | MS.gene80794:intron | 40.0% |
AATTCTTCCCCCTCCTTCTT+TGG | + | chr5.3:66452031-66452050 | MS.gene80794:intron | 45.0% | |
ACAAATCCCACCATTGCATC+CGG | - | chr5.3:66450663-66450682 | None:intergenic | 45.0% | |
ACGGACGATATGTGAAGTTG+AGG | + | chr5.3:66450493-66450512 | MS.gene80794:CDS | 45.0% | |
AGGAACAAGAAGTCAAGGAC+TGG | - | chr5.3:66452136-66452155 | None:intergenic | 45.0% | |
CACAACTTGTCGCAAAACAC+TGG | - | chr5.3:66452431-66452450 | None:intergenic | 45.0% | |
CCAGACATTGCGACTATCAA+CGG | - | chr5.3:66452822-66452841 | None:intergenic | 45.0% | |
CCGACCCTCATTGTTATATG+AGG | + | chr5.3:66451113-66451132 | MS.gene80794:intron | 45.0% | |
CTGAAGTCATGCTTGAGAGA+AGG | + | chr5.3:66450068-66450087 | MS.gene80794:intron | 45.0% | |
GAAACCTCTGTTCAATCCGA+CGG | - | chr5.3:66448807-66448826 | None:intergenic | 45.0% | |
GAATCTAACCAATGGACACG+AGG | - | chr5.3:66450687-66450706 | None:intergenic | 45.0% | |
GATTTGTACCTCGTGTCCAT+TGG | + | chr5.3:66450676-66450695 | MS.gene80794:CDS | 45.0% | |
GCACAATTTGGTCCACAGAA+AGG | - | chr5.3:66452299-66452318 | None:intergenic | 45.0% | |
GTACACTGTCTCACCTTGTT+AGG | + | chr5.3:66452450-66452469 | MS.gene80794:intron | 45.0% | |
GTCGGATTGAACAGAGGTTT+CGG | + | chr5.3:66448806-66448825 | MS.gene80794:CDS | 45.0% | |
GTTTGGGAGGTCATAGTGAA+CGG | + | chr5.3:66452726-66452745 | MS.gene80794:CDS | 45.0% | |
TACGATACATATCCGACACC+GGG | - | chr5.3:66449516-66449535 | None:intergenic | 45.0% | |
TGATGTTTGGCAAAGTGCAC+CGG | + | chr5.3:66450641-66450660 | MS.gene80794:CDS | 45.0% | |
TGGGGATTATGGCTGTTAGA+GGG | - | chr5.3:66450928-66450947 | None:intergenic | 45.0% | |
TTGGGGATTATGGCTGTTAG+AGG | - | chr5.3:66450929-66450948 | None:intergenic | 45.0% | |
! | CCCTCCTTCTTTGGATTAGA+TGG | + | chr5.3:66452040-66452059 | MS.gene80794:intron | 45.0% |
! | CTTCTCGCGTTTTCTTCTAC+TGG | + | chr5.3:66448898-66448917 | MS.gene80794:CDS | 45.0% |
! | GATCTTGGCTGATTTAACGG+TGG | - | chr5.3:66448845-66448864 | None:intergenic | 45.0% |
!! | AGGTTTTATGCTGCCCATCA+TGG | + | chr5.3:66452519-66452538 | MS.gene80794:intron | 45.0% |
ACACTGGGTAGCATGGTCAT+TGG | - | chr5.3:66452415-66452434 | None:intergenic | 50.0% | |
CATATTTCCCTGCTCTTCGG+TGG | + | chr5.3:66450608-66450627 | MS.gene80794:CDS | 50.0% | |
GTGGACGGGTACATATAGCA+TGG | + | chr5.3:66451435-66451454 | MS.gene80794:CDS | 50.0% | |
TCGCAAAACACTGGGTAGCA+TGG | - | chr5.3:66452422-66452441 | None:intergenic | 50.0% | |
TGAACCGTCGGATTGAACAG+AGG | + | chr5.3:66448800-66448819 | MS.gene80794:CDS | 50.0% | |
!! | CCGTTGATAGTCGCAATGTC+TGG | + | chr5.3:66452819-66452838 | MS.gene80794:CDS | 50.0% |
AACTGGTGCACCCCCGTTAT+GGG | + | chr5.3:66451712-66451731 | MS.gene80794:CDS | 55.0% | |
AAGTGCACCGGATGCAATGG+TGG | + | chr5.3:66450653-66450672 | MS.gene80794:CDS | 55.0% | |
AGTGCACCGGATGCAATGGT+GGG | + | chr5.3:66450654-66450673 | MS.gene80794:CDS | 55.0% | |
GCAAAGTGCACCGGATGCAA+TGG | + | chr5.3:66450650-66450669 | MS.gene80794:CDS | 55.0% | |
GCGAATTCCACCGAAGAGCA+GGG | - | chr5.3:66450618-66450637 | None:intergenic | 55.0% | |
TGCGAATTCCACCGAAGAGC+AGG | - | chr5.3:66450619-66450638 | None:intergenic | 55.0% | |
! | ATGGTGGTCTGTGTGGTGGA+CGG | + | chr5.3:66451420-66451439 | MS.gene80794:CDS | 55.0% |
! | GCACCCCCGTTATGGGTTAA+AGG | + | chr5.3:66451719-66451738 | MS.gene80794:CDS | 55.0% |
! | GGAGCTGTTGGTTGAACCGT+CGG | + | chr5.3:66448788-66448807 | MS.gene80794:CDS | 55.0% |
!! | ATGGTGGATGGTGGTCTGTG+TGG | + | chr5.3:66451413-66451432 | MS.gene80794:CDS | 55.0% |
CAACTGGTGCACCCCCGTTA+TGG | + | chr5.3:66451711-66451730 | MS.gene80794:CDS | 60.0% | |
GATTAGGCGTGTCCCGGTGT+CGG | + | chr5.3:66449501-66449520 | MS.gene80794:intron | 60.0% | |
! | GTGGATGGTGGTCTGTGTGG+TGG | + | chr5.3:66451416-66451435 | MS.gene80794:CDS | 60.0% |
! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr5.3:66449495-66449514 | MS.gene80794:intron | 60.0% |
!! | TGGTGGTCTGTGTGGTGGAC+GGG | + | chr5.3:66451421-66451440 | MS.gene80794:CDS | 60.0% |
ACCGGGACACGCCTAATCCG+AGG | - | chr5.3:66449499-66449518 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 66448781 | 66452850 | 66448781 | ID=MS.gene80794 |
chr5.3 | mRNA | 66448781 | 66452850 | 66448781 | ID=MS.gene80794.t1;Parent=MS.gene80794 |
chr5.3 | exon | 66448781 | 66448986 | 66448781 | ID=MS.gene80794.t1.exon1;Parent=MS.gene80794.t1 |
chr5.3 | CDS | 66448781 | 66448986 | 66448781 | ID=cds.MS.gene80794.t1;Parent=MS.gene80794.t1 |
chr5.3 | exon | 66450314 | 66450710 | 66450314 | ID=MS.gene80794.t1.exon2;Parent=MS.gene80794.t1 |
chr5.3 | CDS | 66450314 | 66450710 | 66450314 | ID=cds.MS.gene80794.t1;Parent=MS.gene80794.t1 |
chr5.3 | exon | 66451388 | 66451551 | 66451388 | ID=MS.gene80794.t1.exon3;Parent=MS.gene80794.t1 |
chr5.3 | CDS | 66451388 | 66451551 | 66451388 | ID=cds.MS.gene80794.t1;Parent=MS.gene80794.t1 |
chr5.3 | exon | 66451670 | 66451740 | 66451670 | ID=MS.gene80794.t1.exon4;Parent=MS.gene80794.t1 |
chr5.3 | CDS | 66451670 | 66451740 | 66451670 | ID=cds.MS.gene80794.t1;Parent=MS.gene80794.t1 |
chr5.3 | exon | 66452690 | 66452850 | 66452690 | ID=MS.gene80794.t1.exon5;Parent=MS.gene80794.t1 |
chr5.3 | CDS | 66452690 | 66452850 | 66452690 | ID=cds.MS.gene80794.t1;Parent=MS.gene80794.t1 |
Gene Sequence |
Protein sequence |