Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05859.t1 | XP_003630870.1 | 96.2 | 969 | 33 | 2 | 1 | 966 | 1 | 968 | 0.00E+00 | 1708.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05859.t1 | Q9C744 | 55.2 | 859 | 310 | 7 | 4 | 854 | 3 | 794 | 9.7e-247 | 854.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05859.t1 | G7L9R3 | 96.2 | 969 | 33 | 2 | 1 | 966 | 1 | 968 | 0.0e+00 | 1708.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene05859 | 0.826585 | 2.50E-54 | -1.69E-46 |
| MS.gene05859 | MS.gene05860 | 0.99605 | 7.92E-223 | -1.69E-46 |
| MS.gene05859 | MS.gene05970 | 0.965247 | 2.34E-124 | -1.69E-46 |
| MS.gene05859 | MS.gene05971 | 0.964803 | 8.65E-124 | -1.69E-46 |
| MS.gene05859 | MS.gene059778 | 0.852631 | 4.07E-61 | -1.69E-46 |
| MS.gene05859 | MS.gene061773 | 0.801619 | 8.27E-49 | -1.69E-46 |
| MS.gene05859 | MS.gene064425 | 0.826743 | 2.29E-54 | -1.69E-46 |
| MS.gene05859 | MS.gene068001 | 0.808666 | 2.77E-50 | -1.69E-46 |
| MS.gene05859 | MS.gene21114 | 0.806495 | 8.00E-50 | -1.69E-46 |
| MS.gene05859 | MS.gene24302 | 0.80545 | 1.33E-49 | -1.69E-46 |
| MS.gene05859 | MS.gene24531 | 0.83782 | 4.15E-57 | -1.69E-46 |
| MS.gene05859 | MS.gene26945 | 0.815005 | 1.15E-51 | -1.69E-46 |
| MS.gene05859 | MS.gene27330 | 0.808555 | 2.92E-50 | -1.69E-46 |
| MS.gene05859 | MS.gene32960 | 0.815395 | 9.45E-52 | -1.69E-46 |
| MS.gene05859 | MS.gene39297 | 0.800828 | 1.20E-48 | -1.69E-46 |
| MS.gene05859 | MS.gene40209 | 0.808202 | 3.48E-50 | -1.69E-46 |
| MS.gene05859 | MS.gene58351 | 0.837782 | 4.24E-57 | -1.69E-46 |
| MS.gene05859 | MS.gene71176 | 0.825711 | 4.04E-54 | -1.69E-46 |
| MS.gene05859 | MS.gene71182 | 0.802536 | 5.36E-49 | -1.69E-46 |
| MS.gene05859 | MS.gene71884 | 0.845996 | 2.87E-59 | -1.69E-46 |
| MS.gene05859 | MS.gene75344 | 0.803125 | 4.05E-49 | -1.69E-46 |
| MS.gene05859 | MS.gene83148 | 0.816633 | 5.00E-52 | -1.69E-46 |
| MS.gene05859 | MS.gene90536 | -0.801375 | 9.28E-49 | -1.69E-46 |
| MS.gene05859 | MS.gene93633 | 0.806748 | 7.08E-50 | -1.69E-46 |
| MS.gene05859 | MS.gene96190 | 0.802699 | 4.96E-49 | -1.69E-46 |
| MS.gene05859 | MS.gene96211 | 0.840259 | 9.68E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08515 | MS.gene05859 | PPI |
| MS.gene84170 | MS.gene05859 | PPI |
| MS.gene82003 | MS.gene05859 | PPI |
| MS.gene011991 | MS.gene05859 | PPI |
| MS.gene036995 | MS.gene05859 | PPI |
| MS.gene060477 | MS.gene05859 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05859.t1 | MTR_8g104380 | 96.904 | 969 | 26 | 2 | 1 | 966 | 1 | 968 | 0.0 | 1910 |
| MS.gene05859.t1 | MTR_5g034780 | 23.832 | 428 | 279 | 9 | 18 | 412 | 10 | 423 | 1.25e-27 | 120 |
| MS.gene05859.t1 | MTR_2g084610 | 21.805 | 532 | 354 | 16 | 36 | 522 | 29 | 543 | 2.26e-20 | 97.8 |
| MS.gene05859.t1 | MTR_8g072250 | 24.740 | 384 | 262 | 8 | 20 | 379 | 27 | 407 | 9.94e-18 | 89.4 |
| MS.gene05859.t1 | MTR_8g063690 | 30.909 | 165 | 111 | 2 | 18 | 180 | 10 | 173 | 1.03e-15 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05859.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene05859.t1 | AT1G48760 | 34.211 | 380 | 169 | 11 | 608 | 966 | 550 | 869 | 9.73e-41 | 162 |
| MS.gene05859.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene05859.t1 | AT1G48760 | 34.211 | 380 | 169 | 11 | 608 | 966 | 550 | 869 | 9.73e-41 | 162 |
| MS.gene05859.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene05859.t1 | AT1G48760 | 34.211 | 380 | 169 | 11 | 608 | 966 | 550 | 869 | 9.73e-41 | 162 |
| MS.gene05859.t1 | AT1G60070 | 23.689 | 515 | 329 | 12 | 18 | 493 | 10 | 499 | 3.75e-29 | 125 |
| MS.gene05859.t1 | AT1G60070 | 23.689 | 515 | 329 | 12 | 18 | 493 | 10 | 499 | 3.93e-29 | 125 |
| MS.gene05859.t1 | AT1G23900 | 22.957 | 514 | 332 | 11 | 18 | 492 | 10 | 498 | 2.99e-26 | 116 |
| MS.gene05859.t1 | AT1G23900 | 22.957 | 514 | 332 | 11 | 18 | 492 | 10 | 498 | 2.99e-26 | 116 |
| MS.gene05859.t1 | AT1G23900 | 22.892 | 498 | 322 | 10 | 32 | 492 | 14 | 486 | 1.33e-25 | 114 |
| MS.gene05859.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05859.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05859.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05859.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05859.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05859.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05859.t1 | AT5G22780 | 24.268 | 478 | 301 | 14 | 48 | 484 | 42 | 499 | 6.10e-22 | 102 |
| MS.gene05859.t1 | AT5G22780 | 24.268 | 478 | 301 | 14 | 48 | 484 | 42 | 499 | 6.10e-22 | 102 |
| MS.gene05859.t1 | AT1G31730 | 23.451 | 452 | 302 | 10 | 61 | 481 | 72 | 510 | 1.28e-21 | 101 |
| MS.gene05859.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 920 | 1088 | 4.06e-11 | 67.8 |
| MS.gene05859.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 870 | 1038 | 4.38e-11 | 67.8 |
| MS.gene05859.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 869 | 1037 | 4.41e-11 | 67.8 |
Find 0 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTCAATTCGATTTAAT+AGG | + | 57356:22081-22100 | MS.gene05859:intergenic | 15.0% |
| !!! | AATCGAATTGAATTAATTTT+TGG | - | 57356:22085-22104 | MS.gene05859:CDS | 15.0% |
| !! | ATATTAAAATTGAGTCTTTG+CGG | - | 57356:21279-21298 | MS.gene05859:CDS | 20.0% |
| !! | ATTTATATTACTGTTTGACT+TGG | + | 57356:22596-22615 | MS.gene05859:intergenic | 20.0% |
| !!! | TAAAGTTTTAAGTTTTTGTC+TGG | - | 57356:21781-21800 | MS.gene05859:CDS | 20.0% |
| !!! | TTTATATTACTGTTTGACTT+GGG | + | 57356:22595-22614 | MS.gene05859:intergenic | 20.0% |
| ! | AAAATCTCATTGCAAAATTC+TGG | + | 57356:21383-21402 | MS.gene05859:intergenic | 25.0% |
| ! | AACCAAAATCCTATAAAACT+CGG | + | 57356:20907-20926 | MS.gene05859:intergenic | 25.0% |
| ! | GAATAATTGGGTTCTTATTA+AGG | - | 57356:20935-20954 | MS.gene05859:CDS | 25.0% |
| ! | GATAACAAATTGAAGATATC+AGG | + | 57356:20684-20703 | MS.gene05859:intergenic | 25.0% |
| !! | AGAATTTTGCAATGAGATTT+TGG | - | 57356:21382-21401 | MS.gene05859:CDS | 25.0% |
| !! | AGATTTTCTTTCATTTCAGA+TGG | + | 57356:22892-22911 | MS.gene05859:intergenic | 25.0% |
| !! | GAATTTTGCAATGAGATTTT+GGG | - | 57356:21383-21402 | MS.gene05859:CDS | 25.0% |
| !! | GGTTGATTCTAAGAATAATT+GGG | - | 57356:20923-20942 | MS.gene05859:CDS | 25.0% |
| !! | TCTGAAATGAAAGAAAATCT+TGG | - | 57356:22892-22911 | MS.gene05859:CDS | 25.0% |
| !! | TGGTTGATTCTAAGAATAAT+TGG | - | 57356:20922-20941 | MS.gene05859:CDS | 25.0% |
| !!! | AGATCATTGTTGATTTTGAT+TGG | - | 57356:21441-21460 | MS.gene05859:CDS | 25.0% |
| !!! | TAGGGTTTGTTTTAAAAGAT+TGG | - | 57356:20779-20798 | MS.gene05859:CDS | 25.0% |
| !!! | TTATATTACTGTTTGACTTG+GGG | + | 57356:22594-22613 | MS.gene05859:intergenic | 25.0% |
| !!! | TTATTTTTGCTACTCGAATT+GGG | + | 57356:22946-22965 | MS.gene05859:intergenic | 25.0% |
| !!! | TTTATTTTTGCTACTCGAAT+TGG | + | 57356:22947-22966 | MS.gene05859:intergenic | 25.0% |
| AAACCAAGATACCTAAGATT+AGG | + | 57356:21167-21186 | MS.gene05859:intergenic | 30.0% | |
| AAGTACCTTCATCTTTATCA+AGG | + | 57356:21814-21833 | MS.gene05859:intergenic | 30.0% | |
| AAGTGAAGCATGAAAATGAT+TGG | + | 57356:20607-20626 | MS.gene05859:intergenic | 30.0% | |
| ACCAAAATCCTATAAAACTC+GGG | + | 57356:20906-20925 | MS.gene05859:intergenic | 30.0% | |
| ATAAAAGATGTTCTTGGAAG+TGG | - | 57356:22781-22800 | MS.gene05859:CDS | 30.0% | |
| ATGTAAACTGCTCTTATTGA+CGG | + | 57356:21749-21768 | MS.gene05859:intergenic | 30.0% | |
| CATATCTTCATCAGAAGATT+CGG | + | 57356:21981-22000 | MS.gene05859:intergenic | 30.0% | |
| CTTCTAATATGCTCACAAAT+AGG | + | 57356:21023-21042 | MS.gene05859:intergenic | 30.0% | |
| GACGATTTAAAAGCAATATG+TGG | - | 57356:22352-22371 | MS.gene05859:CDS | 30.0% | |
| GAGAATCAGCTTATTGATAT+TGG | - | 57356:21524-21543 | MS.gene05859:CDS | 30.0% | |
| GATTAAATCTTTGGATGATG+AGG | - | 57356:21250-21269 | MS.gene05859:CDS | 30.0% | |
| GCAAAAATAAAGAGAGAAGA+CGG | - | 57356:22956-22975 | MS.gene05859:CDS | 30.0% | |
| GTAAAGAGAAGATTGTTGAA+GGG | - | 57356:22983-23002 | MS.gene05859:CDS | 30.0% | |
| GTGTAAAACGAAATTGATGA+AGG | + | 57356:22391-22410 | MS.gene05859:intergenic | 30.0% | |
| TAAAGAGAAGATTGTTGAAG+GGG | - | 57356:22984-23003 | MS.gene05859:CDS | 30.0% | |
| TGATATTGGTATGAGAGTTA+AGG | - | 57356:21538-21557 | MS.gene05859:CDS | 30.0% | |
| TGCTTTAATCAACTGTACAA+AGG | + | 57356:22167-22186 | MS.gene05859:intergenic | 30.0% | |
| TGTTACCTTGATAAAGATGA+AGG | - | 57356:21806-21825 | MS.gene05859:CDS | 30.0% | |
| TTCTTCATCTTCTTCAATCA+TGG | - | 57356:20242-20261 | MS.gene05859:CDS | 30.0% | |
| TTGATAAGTCATCAACTAAG+CGG | - | 57356:22836-22855 | MS.gene05859:CDS | 30.0% | |
| ! | AAAAGAAAGTCTGGAATTAC+TGG | + | 57356:23111-23130 | MS.gene05859:intergenic | 30.0% |
| ! | ACTTCCAAGAACATCTTTTA+TGG | + | 57356:22782-22801 | MS.gene05859:intergenic | 30.0% |
| ! | GATTGGTATGTATCTCTTTT+GGG | - | 57356:21458-21477 | MS.gene05859:CDS | 30.0% |
| ! | GCAGAAATAATTGATAACTC+TGG | - | 57356:22184-22203 | MS.gene05859:CDS | 30.0% |
| ! | TCATCAATTTCGTTTTACAC+AGG | - | 57356:22391-22410 | MS.gene05859:CDS | 30.0% |
| ! | TGATTGGTATGTATCTCTTT+TGG | - | 57356:21457-21476 | MS.gene05859:CDS | 30.0% |
| ! | TTCTAAAAAATGACGAGTCA+GGG | - | 57356:22458-22477 | MS.gene05859:CDS | 30.0% |
| ! | TTTGAAGATTTTTGCTAGGT+TGG | - | 57356:20959-20978 | MS.gene05859:CDS | 30.0% |
| !! | CAATTTGTTATCGTCTTCTA+GGG | - | 57356:20692-20711 | MS.gene05859:CDS | 30.0% |
| !! | TCAATTTGTTATCGTCTTCT+AGG | - | 57356:20691-20710 | MS.gene05859:CDS | 30.0% |
| !! | TTAGTTGATGACTTATCAAG+AGG | + | 57356:22835-22854 | MS.gene05859:intergenic | 30.0% |
| !!! | AGGTTTTGAAGATTTTTGCT+AGG | - | 57356:20955-20974 | MS.gene05859:CDS | 30.0% |
| AAGATCTTTACGAAGCTGAT+TGG | + | 57356:20577-20596 | MS.gene05859:intergenic | 35.0% | |
| AAGATGATTCTGTGAGAAGT+TGG | + | 57356:20317-20336 | MS.gene05859:intergenic | 35.0% | |
| AATGACAGCAATAACAACCT+TGG | + | 57356:20829-20848 | MS.gene05859:intergenic | 35.0% | |
| ATAAGTATCCTGATGCTGTT+AGG | - | 57356:20760-20779 | MS.gene05859:CDS | 35.0% | |
| ATCGTTGAAGGAAATTGAAG+CGG | + | 57356:20529-20548 | MS.gene05859:intergenic | 35.0% | |
| ATGACAGCAATAACAACCTT+GGG | + | 57356:20828-20847 | MS.gene05859:intergenic | 35.0% | |
| ATGATTCCTCATTGCCAAAA+GGG | - | 57356:21491-21510 | MS.gene05859:CDS | 35.0% | |
| GATCCTAATCTTAGGTATCT+TGG | - | 57356:21161-21180 | MS.gene05859:CDS | 35.0% | |
| GGATGCTGTGATTAAATCTT+TGG | - | 57356:21241-21260 | MS.gene05859:CDS | 35.0% | |
| GGTAAAGAGAAGATTGTTGA+AGG | - | 57356:22982-23001 | MS.gene05859:CDS | 35.0% | |
| TAAGTATCCTGATGCTGTTA+GGG | - | 57356:20761-20780 | MS.gene05859:CDS | 35.0% | |
| TCAACTTATGAACAGGATGA+GGG | - | 57356:21932-21951 | MS.gene05859:CDS | 35.0% | |
| TGAAGGTTCAACTTATGAAC+AGG | - | 57356:21925-21944 | MS.gene05859:CDS | 35.0% | |
| TGTGAGCATATTAGAAGATC+TGG | - | 57356:21026-21045 | MS.gene05859:CDS | 35.0% | |
| TTCAACTTATGAACAGGATG+AGG | - | 57356:21931-21950 | MS.gene05859:CDS | 35.0% | |
| TTCGAAAATTAGGGAGTTGT+TGG | - | 57356:21130-21149 | MS.gene05859:CDS | 35.0% | |
| TTGATCAGGATCCTAATCTT+AGG | - | 57356:21153-21172 | MS.gene05859:CDS | 35.0% | |
| TTGATTGATCCTGCATTGTT+GGG | - | 57356:21599-21618 | MS.gene05859:CDS | 35.0% | |
| TTTCTGTGAACTTAGTTCCA+AGG | - | 57356:20854-20873 | MS.gene05859:CDS | 35.0% | |
| ! | AAGGTTGTTATTGCTGTCAT+TGG | - | 57356:20828-20847 | MS.gene05859:CDS | 35.0% |
| ! | AATATAATCCATGCCGCTTA+CGG | + | 57356:22516-22535 | MS.gene05859:intergenic | 35.0% |
| ! | ATGCTAGATTACAGCTTGTT+CGG | - | 57356:21561-21580 | MS.gene05859:CDS | 35.0% |
| ! | CTTCTAAAAAATGACGAGTC+AGG | - | 57356:22457-22476 | MS.gene05859:CDS | 35.0% |
| ! | TCAATTTCGTTTTACACAGG+AGG | - | 57356:22394-22413 | MS.gene05859:CDS | 35.0% |
| ! | TCTCAATTTCTTCACCCTTT+TGG | + | 57356:21508-21527 | MS.gene05859:intergenic | 35.0% |
| ! | TCTTTAAGAGCTAATCCATC+TGG | + | 57356:22325-22344 | MS.gene05859:intergenic | 35.0% |
| ! | TTTAGAAAGTTCTGATCCCA+AGG | - | 57356:20809-20828 | MS.gene05859:CDS | 35.0% |
| !! | AGTCACTTCTTTTGAAGAAG+AGG | - | 57356:22650-22669 | MS.gene05859:CDS | 35.0% |
| !! | GATTACTTTGAGACAAACTC+GGG | + | 57356:22813-22832 | MS.gene05859:intergenic | 35.0% |
| !! | GGATTACTTTGAGACAAACT+CGG | + | 57356:22814-22833 | MS.gene05859:intergenic | 35.0% |
| !!! | AAGCTATTGCTGTTGTTTTG+AGG | - | 57356:20730-20749 | MS.gene05859:CDS | 35.0% |
| !!! | AGCTATTGCTGTTGTTTTGA+GGG | - | 57356:20731-20750 | MS.gene05859:CDS | 35.0% |
| !!! | CGTCTTCTAGGGTTTTTATT+AGG | - | 57356:20703-20722 | MS.gene05859:CDS | 35.0% |
| AAACAAACCCTAACAGCATC+AGG | + | 57356:20771-20790 | MS.gene05859:intergenic | 40.0% | |
| AAATAAAAGGCCAGAGCCAA+GGG | - | 57356:22738-22757 | MS.gene05859:CDS | 40.0% | |
| AACCACGTTTAAGGGTGAAT+TGG | + | 57356:23079-23098 | MS.gene05859:intergenic | 40.0% | |
| AAGTCATCAACTAAGCGGAA+AGG | - | 57356:22841-22860 | MS.gene05859:CDS | 40.0% | |
| AATAAAGAGAGAAGACGGAG+AGG | - | 57356:22961-22980 | MS.gene05859:CDS | 40.0% | |
| AGTCATCAACTAAGCGGAAA+GGG | - | 57356:22842-22861 | MS.gene05859:CDS | 40.0% | |
| AGTTGGCGGTTTCGAAAATT+AGG | - | 57356:21120-21139 | MS.gene05859:CDS | 40.0% | |
| ATAAACATTCCTACCACACG+TGG | + | 57356:21420-21439 | MS.gene05859:intergenic | 40.0% | |
| ATCTTCATCAGAAGATTCGG+CGG | + | 57356:21978-21997 | MS.gene05859:intergenic | 40.0% | |
| CTCTTCCTTCACAAACGAAT+TGG | - | 57356:20495-20514 | MS.gene05859:CDS | 40.0% | |
| GAAATAGTGGCAACATGTGA+AGG | - | 57356:21908-21927 | MS.gene05859:CDS | 40.0% | |
| GATGATTCCTCATTGCCAAA+AGG | - | 57356:21490-21509 | MS.gene05859:CDS | 40.0% | |
| GGATTTGATGAGATCGTCTA+GGG | + | 57356:20286-20305 | MS.gene05859:intergenic | 40.0% | |
| GGTAACCAATTCGTTTGTGA+AGG | + | 57356:20503-20522 | MS.gene05859:intergenic | 40.0% | |
| GTTGATTGATCCTGCATTGT+TGG | - | 57356:21598-21617 | MS.gene05859:CDS | 40.0% | |
| GTTGGCGGTTTCGAAAATTA+GGG | - | 57356:21121-21140 | MS.gene05859:CDS | 40.0% | |
| GTTTGGGAAACCACGTTTAA+GGG | + | 57356:23087-23106 | MS.gene05859:intergenic | 40.0% | |
| TAAACTGCTCTTATTGACGG+AGG | + | 57356:21746-21765 | MS.gene05859:intergenic | 40.0% | |
| TACACATTACCCAACAATGC+AGG | + | 57356:21611-21630 | MS.gene05859:intergenic | 40.0% | |
| TCACATGTTGCCACTATTTC+AGG | + | 57356:21908-21927 | MS.gene05859:intergenic | 40.0% | |
| TGATAACTCTGGTCAGAATG+TGG | - | 57356:22195-22214 | MS.gene05859:CDS | 40.0% | |
| TGGATTTGATGAGATCGTCT+AGG | + | 57356:20287-20306 | MS.gene05859:intergenic | 40.0% | |
| TGGGTAATGTGTACTTGCAT+AGG | - | 57356:21618-21637 | MS.gene05859:CDS | 40.0% | |
| TGTTTGGGAAACCACGTTTA+AGG | + | 57356:23088-23107 | MS.gene05859:intergenic | 40.0% | |
| TTCCTTCAACGATTCAACAC+CGG | - | 57356:20536-20555 | MS.gene05859:CDS | 40.0% | |
| TTTGCTGGGGGATAATCATT+TGG | + | 57356:22568-22587 | MS.gene05859:intergenic | 40.0% | |
| TTTGTGAAGGAAGAGAGAAG+AGG | + | 57356:20490-20509 | MS.gene05859:intergenic | 40.0% | |
| ! | AGAGCATCAATGAGTTCAAG+TGG | + | 57356:21698-21717 | MS.gene05859:intergenic | 40.0% |
| ! | AGTCTGGAATTACTGGTGTT+TGG | + | 57356:23104-23123 | MS.gene05859:intergenic | 40.0% |
| ! | CAATGTGGTGGAGATATCTA+GGG | - | 57356:21328-21347 | MS.gene05859:CDS | 40.0% |
| ! | CTACTCGAATTGGGATTTTC+AGG | + | 57356:22937-22956 | MS.gene05859:intergenic | 40.0% |
| ! | GGTGCCATAAAAGATGTTCT+TGG | - | 57356:22775-22794 | MS.gene05859:CDS | 40.0% |
| ! | GTCTGGAATTACTGGTGTTT+GGG | + | 57356:23103-23122 | MS.gene05859:intergenic | 40.0% |
| ! | TCTCAGTCTTATCTGAAGCA+AGG | + | 57356:22540-22559 | MS.gene05859:intergenic | 40.0% |
| ! | TCTGAAGTAGTGCCAAATTG+AGG | + | 57356:22421-22440 | MS.gene05859:intergenic | 40.0% |
| ! | TGCTAGATTACAGCTTGTTC+GGG | - | 57356:21562-21581 | MS.gene05859:CDS | 40.0% |
| !! | CAATTTTAACCACGTGTGGT+AGG | - | 57356:21408-21427 | MS.gene05859:CDS | 40.0% |
| !! | GAATTGGGATTTTCAGGATC+AGG | + | 57356:22931-22950 | MS.gene05859:intergenic | 40.0% |
| !! | GCCCGAGTTTTATAGGATTT+TGG | - | 57356:20902-20921 | MS.gene05859:CDS | 40.0% |
| !! | GGTTCAATTTTAACCACGTG+TGG | - | 57356:21404-21423 | MS.gene05859:CDS | 40.0% |
| !! | TTGGTGATGAGAAGAAGAAC+CGG | + | 57356:20558-20577 | MS.gene05859:intergenic | 40.0% |
| !!! | GTAGGTGAGTTTTTGAAGTG+CGG | + | 57356:20406-20425 | MS.gene05859:intergenic | 40.0% |
| !!! | TTTTTGAAGTGCGGTGGATT+TGG | + | 57356:20397-20416 | MS.gene05859:intergenic | 40.0% |
| AAAAAGAGTAGCCACCGTCA+TGG | - | 57356:23030-23049 | MS.gene05859:CDS | 45.0% | |
| AAGATACGATCTCGGATCCT+TGG | + | 57356:20874-20893 | MS.gene05859:intergenic | 45.0% | |
| AAGTGACTGCTCTGTCAACT+TGG | + | 57356:22638-22657 | MS.gene05859:intergenic | 45.0% | |
| AATCTCACCACTACAGGTCT+GGG | + | 57356:22691-22710 | MS.gene05859:intergenic | 45.0% | |
| ACAATCCTCTTCCCTAACCT+AGG | + | 57356:20996-21015 | MS.gene05859:intergenic | 45.0% | |
| AGCCAATTCACCCTTAAACG+TGG | - | 57356:23074-23093 | MS.gene05859:CDS | 45.0% | |
| AGGGGAAGAATCTGATCAGA+AGG | - | 57356:23002-23021 | MS.gene05859:CDS | 45.0% | |
| ATTCGGCGGTTGAATTCCTT+GGG | + | 57356:21964-21983 | MS.gene05859:intergenic | 45.0% | |
| CAAATAAAAGGCCAGAGCCA+AGG | - | 57356:22737-22756 | MS.gene05859:CDS | 45.0% | |
| CACTGAAGCTCCTGAAATAG+TGG | - | 57356:21895-21914 | MS.gene05859:CDS | 45.0% | |
| CAGCACCAGGTCCAAATAAA+AGG | - | 57356:22725-22744 | MS.gene05859:CDS | 45.0% | |
| CCAAGGGACAATTCTCTTTC+TGG | - | 57356:22754-22773 | MS.gene05859:CDS | 45.0% | |
| CCAGAAAGAGAATTGTCCCT+TGG | + | 57356:22757-22776 | MS.gene05859:intergenic | 45.0% | |
| CCAGTCTCAATAAGTGCACA+GGG | - | 57356:22286-22305 | MS.gene05859:CDS | 45.0% | |
| CCATGGAATCGACATGTCAT+GGG | - | 57356:20437-20456 | MS.gene05859:CDS | 45.0% | |
| CGGAAAGGGAAGAAGAAACT+AGG | - | 57356:22856-22875 | MS.gene05859:CDS | 45.0% | |
| GGAAGAGTTACTGTACCAGA+TGG | - | 57356:22307-22326 | MS.gene05859:CDS | 45.0% | |
| GGGGAAGAATCTGATCAGAA+GGG | - | 57356:23003-23022 | MS.gene05859:CDS | 45.0% | |
| GTAGTGGTGAGATTGGATGA+TGG | - | 57356:22697-22716 | MS.gene05859:CDS | 45.0% | |
| TACACAGGAGGTCCTCAATT+TGG | - | 57356:22406-22425 | MS.gene05859:CDS | 45.0% | |
| TATTGACGGAGGCAAGAGAT+TGG | + | 57356:21735-21754 | MS.gene05859:intergenic | 45.0% | |
| TCACGAGTCTGCTGTTAAGT+TGG | - | 57356:21103-21122 | MS.gene05859:CDS | 45.0% | |
| TCATCCAATCTCACCACTAC+AGG | + | 57356:22697-22716 | MS.gene05859:intergenic | 45.0% | |
| TCCAGTCTCAATAAGTGCAC+AGG | - | 57356:22285-22304 | MS.gene05859:CDS | 45.0% | |
| TCCATGGAATCGACATGTCA+TGG | - | 57356:20436-20455 | MS.gene05859:CDS | 45.0% | |
| TGAAGGAAATTGAAGCGGCA+TGG | + | 57356:20524-20543 | MS.gene05859:intergenic | 45.0% | |
| TGAGTCTTTGCGGTTGTTGA+TGG | - | 57356:21289-21308 | MS.gene05859:CDS | 45.0% | |
| TGGTTCACTGACAGCAAATC+AGG | - | 57356:22105-22124 | MS.gene05859:CDS | 45.0% | |
| TTCCCTAACCTAGGTTCCAA+AGG | + | 57356:20987-21006 | MS.gene05859:intergenic | 45.0% | |
| TTGATGCTCTTGTACAGCCT+CGG | - | 57356:21708-21727 | MS.gene05859:CDS | 45.0% | |
| ! | AACCGGTGTTGAATCGTTGA+AGG | + | 57356:20541-20560 | MS.gene05859:intergenic | 45.0% |
| ! | GATATTGTGTGCTGCTGCTT+GGG | - | 57356:21640-21659 | MS.gene05859:CDS | 45.0% |
| ! | GCAATGTGGTGGAGATATCT+AGG | - | 57356:21327-21346 | MS.gene05859:CDS | 45.0% |
| ! | TAGGGAGTTGTTGGTTGATC+AGG | - | 57356:21139-21158 | MS.gene05859:CDS | 45.0% |
| ! | TATGGTCTCTGAGAGCAATG+TGG | - | 57356:21313-21332 | MS.gene05859:CDS | 45.0% |
| ! | TCTTCACCCTTTTGGCAATG+AGG | + | 57356:21500-21519 | MS.gene05859:intergenic | 45.0% |
| !! | ACTTTGAGACAAACTCGGGT+TGG | + | 57356:22809-22828 | MS.gene05859:intergenic | 45.0% |
| !! | CTCCTTTGGAACCTAGGTTA+GGG | - | 57356:20982-21001 | MS.gene05859:CDS | 45.0% |
| !! | GGTGGATTTGGTTTGTGGAT+CGG | + | 57356:20385-20404 | MS.gene05859:intergenic | 45.0% |
| !! | TCTGGCCTTTTATTTGGACC+TGG | + | 57356:22733-22752 | MS.gene05859:intergenic | 45.0% |
| !! | TGACATGTCGATTCCATGGA+TGG | + | 57356:20436-20455 | MS.gene05859:intergenic | 45.0% |
| !! | TTGACTTGGGGTCATTTGCT+GGG | + | 57356:22582-22601 | MS.gene05859:intergenic | 45.0% |
| !! | TTTGACTTGGGGTCATTTGC+TGG | + | 57356:22583-22602 | MS.gene05859:intergenic | 45.0% |
| !! | TTTGCGGTTGTTGATGGCTA+TGG | - | 57356:21295-21314 | MS.gene05859:CDS | 45.0% |
| !! | TTTTGCTAGGTTGGCTCCTT+TGG | - | 57356:20968-20987 | MS.gene05859:CDS | 45.0% |
| !!! | CGCTTGTTTTTGAGTGTGTG+AGG | - | 57356:21057-21076 | MS.gene05859:CDS | 45.0% |
| !!! | CTTGGCTCTGGCCTTTTATT+TGG | + | 57356:22739-22758 | MS.gene05859:intergenic | 45.0% |
| !!! | GATGCTTTTTCCGTGGAACT+TGG | - | 57356:22262-22281 | MS.gene05859:CDS | 45.0% |
| AATGAAGCCCAGACCTGTAG+TGG | - | 57356:22681-22700 | MS.gene05859:CDS | 50.0% | |
| ACTCTGGTCAGAATGTGGAC+AGG | - | 57356:22200-22219 | MS.gene05859:CDS | 50.0% | |
| AGAGAATTGTCCCTTGGCTC+TGG | + | 57356:22751-22770 | MS.gene05859:intergenic | 50.0% | |
| AGCACTGCCCACAAATGCTT+CGG | + | 57356:21212-21231 | MS.gene05859:intergenic | 50.0% | |
| AGGACATTACCTCGACAACG+TGG | + | 57356:20470-20489 | MS.gene05859:intergenic | 50.0% | |
| CAATCTCACCACTACAGGTC+TGG | + | 57356:22692-22711 | MS.gene05859:intergenic | 50.0% | |
| CAGACCTGTAGTGGTGAGAT+TGG | - | 57356:22690-22709 | MS.gene05859:CDS | 50.0% | |
| CATTACCTCGACAACGTGGA+AGG | + | 57356:20466-20485 | MS.gene05859:intergenic | 50.0% | |
| CCCTGTGCACTTATTGAGAC+TGG | + | 57356:22289-22308 | MS.gene05859:intergenic | 50.0% | |
| CCTTGCTTGAACACCGTAAG+CGG | - | 57356:22500-22519 | MS.gene05859:CDS | 50.0% | |
| CTATAAAACTCGGGCGCCAA+CGG | + | 57356:20897-20916 | MS.gene05859:intergenic | 50.0% | |
| GATTCGGCGGTTGAATTCCT+TGG | + | 57356:21965-21984 | MS.gene05859:intergenic | 50.0% | |
| GCCAACGGAAGATACGATCT+CGG | + | 57356:20882-20901 | MS.gene05859:intergenic | 50.0% | |
| GTGGGCAGTGCTAGAGAATA+AGG | - | 57356:21220-21239 | MS.gene05859:CDS | 50.0% | |
| TCCGAGATCGTATCTTCCGT+TGG | - | 57356:20878-20897 | MS.gene05859:CDS | 50.0% | |
| TGAGACTGGACCAAGTTCCA+CGG | + | 57356:22275-22294 | MS.gene05859:intergenic | 50.0% | |
| TGGAACCTAGGTTAGGGAAG+AGG | - | 57356:20988-21007 | MS.gene05859:CDS | 50.0% | |
| TGTGAGAAGTTGGAGTCGCA+TGG | + | 57356:20307-20326 | MS.gene05859:intergenic | 50.0% | |
| ! | AGGATGAGGGCTTTAACCCA+AGG | - | 57356:21945-21964 | MS.gene05859:CDS | 50.0% |
| ! | GAGTTTTACGCCTGCCATGA+CGG | + | 57356:23047-23066 | MS.gene05859:intergenic | 50.0% |
| ! | GGATATTGTGTGCTGCTGCT+TGG | - | 57356:21639-21658 | MS.gene05859:CDS | 50.0% |
| ! | TGACTTGGGGTCATTTGCTG+GGG | + | 57356:22581-22600 | MS.gene05859:intergenic | 50.0% |
| ! | TGAGATCGTCTAGGGTTCGT+TGG | + | 57356:20278-20297 | MS.gene05859:intergenic | 50.0% |
| ! | TGCTACGCCGAAGCATTTGT+GGG | - | 57356:21202-21221 | MS.gene05859:CDS | 50.0% |
| ! | TTGCTACGCCGAAGCATTTG+TGG | - | 57356:21201-21220 | MS.gene05859:CDS | 50.0% |
| !! | AGTGCGGTGGATTTGGTTTG+TGG | + | 57356:20390-20409 | MS.gene05859:intergenic | 50.0% |
| !! | CATGTCGATTCCATGGATGG+AGG | + | 57356:20433-20452 | MS.gene05859:intergenic | 50.0% |
| !! | CCCATGACATGTCGATTCCA+TGG | + | 57356:20440-20459 | MS.gene05859:intergenic | 50.0% |
| !! | CGAGTCTGCTGTTAAGTTGG+CGG | - | 57356:21106-21125 | MS.gene05859:CDS | 50.0% |
| !! | GAAGGTACTTCATCCTCACG+TGG | - | 57356:21824-21843 | MS.gene05859:CDS | 50.0% |
| !! | GCTCCTTTGGAACCTAGGTT+AGG | - | 57356:20981-21000 | MS.gene05859:CDS | 50.0% |
| !! | GGATTTGGTTTGTGGATCGG+TGG | + | 57356:20382-20401 | MS.gene05859:intergenic | 50.0% |
| !! | GTTCCACGGAAAAAGCATCG+CGG | + | 57356:22261-22280 | MS.gene05859:intergenic | 50.0% |
| !!! | GGTGAGTTTTTGAAGTGCGG+TGG | + | 57356:20403-20422 | MS.gene05859:intergenic | 50.0% |
| ACCTACCTCTCCTCCATCCA+TGG | - | 57356:20420-20439 | MS.gene05859:CDS | 55.0% | |
| CCGCTTACGGTGTTCAAGCA+AGG | + | 57356:22503-22522 | MS.gene05859:intergenic | 55.0% | |
| CGATTCCATGGATGGAGGAG+AGG | + | 57356:20428-20447 | MS.gene05859:intergenic | 55.0% | |
| CTTGAACACCGTAAGCGGCA+TGG | - | 57356:22505-22524 | MS.gene05859:CDS | 55.0% | |
| GGTACTTCATCCTCACGTGG+TGG | - | 57356:21827-21846 | MS.gene05859:CDS | 55.0% | |
| TCCATGGATGGAGGAGAGGT+AGG | + | 57356:20424-20443 | MS.gene05859:intergenic | 55.0% | |
| ! | ATCCTCACGTGGTGGCGAAT+TGG | - | 57356:21835-21854 | MS.gene05859:CDS | 55.0% |
| ! | GACTTGGGGTCATTTGCTGG+GGG | + | 57356:22580-22599 | MS.gene05859:intergenic | 55.0% |
| ! | GGTCTCTGAGAGCAATGTGG+TGG | - | 57356:21316-21335 | MS.gene05859:CDS | 55.0% |
| ! | TTTTACGCCTGCCATGACGG+TGG | + | 57356:23044-23063 | MS.gene05859:intergenic | 55.0% |
| !! | CACGGAAAAAGCATCGCGGA+TGG | + | 57356:22257-22276 | MS.gene05859:intergenic | 55.0% |
| !! | CGTTGGCGCCCGAGTTTTAT+AGG | - | 57356:20895-20914 | MS.gene05859:CDS | 55.0% |
| !! | GATGATGGAGATGCAGCACC+AGG | - | 57356:22712-22731 | MS.gene05859:CDS | 55.0% |
| !! | GGTTGGCTCCTTTGGAACCT+AGG | - | 57356:20976-20995 | MS.gene05859:CDS | 55.0% |
| !!! | CATCCGCGATGCTTTTTCCG+TGG | - | 57356:22255-22274 | MS.gene05859:CDS | 55.0% |
| AGAGTAGCCACCGTCATGGC+AGG | - | 57356:23034-23053 | MS.gene05859:CDS | 60.0% | |
| AGCCAATTCGCCACCACGTG+AGG | + | 57356:21840-21859 | MS.gene05859:intergenic | 60.0% | |
| GGCTTCCTTCCACGTTGTCG+AGG | - | 57356:20458-20477 | MS.gene05859:CDS | 60.0% | |
| ! | CGTGGTGGCGAATTGGCTAG+CGG | - | 57356:21842-21861 | MS.gene05859:CDS | 60.0% |
| ! | GGAGGCAAGAGATTGGTCCG+AGG | + | 57356:21728-21747 | MS.gene05859:intergenic | 60.0% |
| ! | TGTGCTGCTGCTTGGGTTGC+TGG | - | 57356:21647-21666 | MS.gene05859:CDS | 60.0% |
| ATCACGCGCGAGGTCGAGAG+TGG | + | 57356:20655-20674 | MS.gene05859:intergenic | 65.0% | |
| CAGGAGTGAGATCACGCGCG+AGG | + | 57356:20665-20684 | MS.gene05859:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57356 | gene | 20234 | 23134 | 20234 | ID=MS.gene05859 |
| 57356 | mRNA | 20234 | 23134 | 20234 | ID=MS.gene05859.t1;Parent=MS.gene05859 |
| 57356 | exon | 20234 | 23134 | 20234 | ID=MS.gene05859.t1.exon1;Parent=MS.gene05859.t1 |
| 57356 | CDS | 20234 | 23134 | 20234 | ID=cds.MS.gene05859.t1;Parent=MS.gene05859.t1 |
| Gene Sequence |
| Protein sequence |
