Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05860.t1 | XP_003630870.1 | 96.2 | 969 | 33 | 2 | 1 | 966 | 1 | 968 | 0.00E+00 | 1708.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05860.t1 | Q9C744 | 55.2 | 859 | 310 | 7 | 4 | 854 | 3 | 794 | 9.7e-247 | 854.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05860.t1 | G7L9R3 | 96.2 | 969 | 33 | 2 | 1 | 966 | 1 | 968 | 0.0e+00 | 1708.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene05860 | 0.82719 | 1.79E-54 | -1.69E-46 |
| MS.gene05859 | MS.gene05860 | 0.99605 | 7.92E-223 | -1.69E-46 |
| MS.gene05860 | MS.gene05970 | 0.965676 | 6.49E-125 | -1.69E-46 |
| MS.gene05860 | MS.gene05971 | 0.967219 | 5.62E-127 | -1.69E-46 |
| MS.gene05860 | MS.gene059778 | 0.852743 | 3.78E-61 | -1.69E-46 |
| MS.gene05860 | MS.gene064425 | 0.833155 | 6.27E-56 | -1.69E-46 |
| MS.gene05860 | MS.gene066055 | 0.802921 | 4.46E-49 | -1.69E-46 |
| MS.gene05860 | MS.gene068001 | 0.815297 | 9.94E-52 | -1.69E-46 |
| MS.gene05860 | MS.gene20934 | 0.800692 | 1.28E-48 | -1.69E-46 |
| MS.gene05860 | MS.gene21114 | 0.8109 | 9.16E-51 | -1.69E-46 |
| MS.gene05860 | MS.gene24302 | 0.805202 | 1.50E-49 | -1.69E-46 |
| MS.gene05860 | MS.gene24531 | 0.840662 | 7.60E-58 | -1.69E-46 |
| MS.gene05860 | MS.gene26945 | 0.819206 | 1.31E-52 | -1.69E-46 |
| MS.gene05860 | MS.gene27330 | 0.814933 | 1.20E-51 | -1.69E-46 |
| MS.gene05860 | MS.gene32960 | 0.819668 | 1.03E-52 | -1.69E-46 |
| MS.gene05860 | MS.gene39297 | 0.804948 | 1.69E-49 | -1.69E-46 |
| MS.gene05860 | MS.gene40209 | 0.806048 | 9.94E-50 | -1.69E-46 |
| MS.gene05860 | MS.gene58351 | 0.840383 | 8.99E-58 | -1.69E-46 |
| MS.gene05860 | MS.gene71176 | 0.828956 | 6.74E-55 | -1.69E-46 |
| MS.gene05860 | MS.gene71182 | 0.804681 | 1.92E-49 | -1.69E-46 |
| MS.gene05860 | MS.gene71884 | 0.847628 | 1.03E-59 | -1.69E-46 |
| MS.gene05860 | MS.gene75344 | 0.806853 | 6.72E-50 | -1.69E-46 |
| MS.gene05860 | MS.gene81525 | -0.802127 | 6.50E-49 | -1.69E-46 |
| MS.gene05860 | MS.gene83148 | 0.822216 | 2.67E-53 | -1.69E-46 |
| MS.gene05860 | MS.gene90536 | -0.80584 | 1.10E-49 | -1.69E-46 |
| MS.gene05860 | MS.gene93633 | 0.806808 | 6.87E-50 | -1.69E-46 |
| MS.gene05860 | MS.gene96190 | 0.808029 | 3.79E-50 | -1.69E-46 |
| MS.gene05860 | MS.gene96211 | 0.845141 | 4.89E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060477 | MS.gene05860 | PPI |
| MS.gene08515 | MS.gene05860 | PPI |
| MS.gene84170 | MS.gene05860 | PPI |
| MS.gene82003 | MS.gene05860 | PPI |
| MS.gene011991 | MS.gene05860 | PPI |
| MS.gene036995 | MS.gene05860 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05860.t1 | MTR_8g104380 | 96.904 | 969 | 26 | 2 | 1 | 966 | 1 | 968 | 0.0 | 1910 |
| MS.gene05860.t1 | MTR_5g034780 | 23.832 | 428 | 279 | 9 | 18 | 412 | 10 | 423 | 1.25e-27 | 120 |
| MS.gene05860.t1 | MTR_2g084610 | 21.805 | 532 | 354 | 16 | 36 | 522 | 29 | 543 | 2.26e-20 | 97.8 |
| MS.gene05860.t1 | MTR_8g072250 | 24.740 | 384 | 262 | 8 | 20 | 379 | 27 | 407 | 9.94e-18 | 89.4 |
| MS.gene05860.t1 | MTR_8g063690 | 30.909 | 165 | 111 | 2 | 18 | 180 | 10 | 173 | 1.03e-15 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05860.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene05860.t1 | AT1G48760 | 34.211 | 380 | 169 | 11 | 608 | 966 | 550 | 869 | 9.73e-41 | 162 |
| MS.gene05860.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene05860.t1 | AT1G48760 | 34.211 | 380 | 169 | 11 | 608 | 966 | 550 | 869 | 9.73e-41 | 162 |
| MS.gene05860.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene05860.t1 | AT1G48760 | 34.211 | 380 | 169 | 11 | 608 | 966 | 550 | 869 | 9.73e-41 | 162 |
| MS.gene05860.t1 | AT1G60070 | 23.689 | 515 | 329 | 12 | 18 | 493 | 10 | 499 | 3.75e-29 | 125 |
| MS.gene05860.t1 | AT1G60070 | 23.689 | 515 | 329 | 12 | 18 | 493 | 10 | 499 | 3.93e-29 | 125 |
| MS.gene05860.t1 | AT1G23900 | 22.957 | 514 | 332 | 11 | 18 | 492 | 10 | 498 | 2.99e-26 | 116 |
| MS.gene05860.t1 | AT1G23900 | 22.957 | 514 | 332 | 11 | 18 | 492 | 10 | 498 | 2.99e-26 | 116 |
| MS.gene05860.t1 | AT1G23900 | 22.892 | 498 | 322 | 10 | 32 | 492 | 14 | 486 | 1.33e-25 | 114 |
| MS.gene05860.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05860.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05860.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05860.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05860.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05860.t1 | AT5G22770 | 24.477 | 478 | 300 | 14 | 48 | 484 | 42 | 499 | 3.07e-22 | 103 |
| MS.gene05860.t1 | AT5G22780 | 24.268 | 478 | 301 | 14 | 48 | 484 | 42 | 499 | 6.10e-22 | 102 |
| MS.gene05860.t1 | AT5G22780 | 24.268 | 478 | 301 | 14 | 48 | 484 | 42 | 499 | 6.10e-22 | 102 |
| MS.gene05860.t1 | AT1G31730 | 23.451 | 452 | 302 | 10 | 61 | 481 | 72 | 510 | 1.28e-21 | 101 |
| MS.gene05860.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 920 | 1088 | 4.06e-11 | 67.8 |
| MS.gene05860.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 870 | 1038 | 4.38e-11 | 67.8 |
| MS.gene05860.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 869 | 1037 | 4.41e-11 | 67.8 |
Find 0 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTCAATTCGATTTAAT+AGG | + | 57351:7950-7969 | MS.gene05860:intergenic | 15.0% |
| !!! | AATCGAATTGAATTAATTTT+TGG | - | 57351:7954-7973 | MS.gene05860:CDS | 15.0% |
| !! | ATATTAAAATTGAGTCTTTG+CGG | - | 57351:7148-7167 | MS.gene05860:CDS | 20.0% |
| !! | ATTTATATTACTGTTTGACT+TGG | + | 57351:8465-8484 | MS.gene05860:intergenic | 20.0% |
| !!! | TAAAGTTTTAAGTTTTTGTC+TGG | - | 57351:7650-7669 | MS.gene05860:CDS | 20.0% |
| !!! | TTTATATTACTGTTTGACTT+GGG | + | 57351:8464-8483 | MS.gene05860:intergenic | 20.0% |
| ! | AAAATCTCATTGCAAAATTC+TGG | + | 57351:7252-7271 | MS.gene05860:intergenic | 25.0% |
| ! | AACCAAAATCCTATAAAACT+CGG | + | 57351:6776-6795 | MS.gene05860:intergenic | 25.0% |
| ! | GAATAATTGGGTTCTTATTA+AGG | - | 57351:6804-6823 | MS.gene05860:CDS | 25.0% |
| ! | GATAACAAATTGAAGATATC+AGG | + | 57351:6553-6572 | MS.gene05860:intergenic | 25.0% |
| !! | AGAATTTTGCAATGAGATTT+TGG | - | 57351:7251-7270 | MS.gene05860:CDS | 25.0% |
| !! | AGATTTTCTTTCATTTCAGA+TGG | + | 57351:8761-8780 | MS.gene05860:intergenic | 25.0% |
| !! | GAATTTTGCAATGAGATTTT+GGG | - | 57351:7252-7271 | MS.gene05860:CDS | 25.0% |
| !! | GGTTGATTCTAAGAATAATT+GGG | - | 57351:6792-6811 | MS.gene05860:CDS | 25.0% |
| !! | TCTGAAATGAAAGAAAATCT+TGG | - | 57351:8761-8780 | MS.gene05860:CDS | 25.0% |
| !! | TGGTTGATTCTAAGAATAAT+TGG | - | 57351:6791-6810 | MS.gene05860:CDS | 25.0% |
| !!! | AGATCATTGTTGATTTTGAT+TGG | - | 57351:7310-7329 | MS.gene05860:CDS | 25.0% |
| !!! | TAGGGTTTGTTTTAAAAGAT+TGG | - | 57351:6648-6667 | MS.gene05860:CDS | 25.0% |
| !!! | TTATATTACTGTTTGACTTG+GGG | + | 57351:8463-8482 | MS.gene05860:intergenic | 25.0% |
| !!! | TTATTTTTGCTACTCGAATT+GGG | + | 57351:8815-8834 | MS.gene05860:intergenic | 25.0% |
| !!! | TTTATTTTTGCTACTCGAAT+TGG | + | 57351:8816-8835 | MS.gene05860:intergenic | 25.0% |
| AAACCAAGATACCTAAGATT+AGG | + | 57351:7036-7055 | MS.gene05860:intergenic | 30.0% | |
| AAGTACCTTCATCTTTATCA+AGG | + | 57351:7683-7702 | MS.gene05860:intergenic | 30.0% | |
| AAGTGAAGCATGAAAATGAT+TGG | + | 57351:6476-6495 | MS.gene05860:intergenic | 30.0% | |
| ACCAAAATCCTATAAAACTC+GGG | + | 57351:6775-6794 | MS.gene05860:intergenic | 30.0% | |
| ATAAAAGATGTTCTTGGAAG+TGG | - | 57351:8650-8669 | MS.gene05860:CDS | 30.0% | |
| ATGTAAACTGCTCTTATTGA+CGG | + | 57351:7618-7637 | MS.gene05860:intergenic | 30.0% | |
| CATATCTTCATCAGAAGATT+CGG | + | 57351:7850-7869 | MS.gene05860:intergenic | 30.0% | |
| CTTCTAATATGCTCACAAAT+AGG | + | 57351:6892-6911 | MS.gene05860:intergenic | 30.0% | |
| GACGATTTAAAAGCAATATG+TGG | - | 57351:8221-8240 | MS.gene05860:CDS | 30.0% | |
| GAGAATCAGCTTATTGATAT+TGG | - | 57351:7393-7412 | MS.gene05860:CDS | 30.0% | |
| GATTAAATCTTTGGATGATG+AGG | - | 57351:7119-7138 | MS.gene05860:CDS | 30.0% | |
| GCAAAAATAAAGAGAGAAGA+CGG | - | 57351:8825-8844 | MS.gene05860:CDS | 30.0% | |
| GTAAAGAGAAGATTGTTGAA+GGG | - | 57351:8852-8871 | MS.gene05860:CDS | 30.0% | |
| GTGTAAAACGAAATTGATGA+AGG | + | 57351:8260-8279 | MS.gene05860:intergenic | 30.0% | |
| TAAAGAGAAGATTGTTGAAG+GGG | - | 57351:8853-8872 | MS.gene05860:CDS | 30.0% | |
| TGATATTGGTATGAGAGTTA+AGG | - | 57351:7407-7426 | MS.gene05860:CDS | 30.0% | |
| TGCTTTAATCAACTGTACAA+AGG | + | 57351:8036-8055 | MS.gene05860:intergenic | 30.0% | |
| TGTTACCTTGATAAAGATGA+AGG | - | 57351:7675-7694 | MS.gene05860:CDS | 30.0% | |
| TTCTTCATCTTCTTCAATCA+TGG | - | 57351:6111-6130 | MS.gene05860:CDS | 30.0% | |
| TTGATAAGTCATCAACTAAG+CGG | - | 57351:8705-8724 | MS.gene05860:CDS | 30.0% | |
| ! | AAAAGAAAGTCTGGAATTAC+TGG | + | 57351:8980-8999 | MS.gene05860:intergenic | 30.0% |
| ! | ACTTCCAAGAACATCTTTTA+TGG | + | 57351:8651-8670 | MS.gene05860:intergenic | 30.0% |
| ! | GATTGGTATGTATCTCTTTT+GGG | - | 57351:7327-7346 | MS.gene05860:CDS | 30.0% |
| ! | GCAGAAATAATTGATAACTC+TGG | - | 57351:8053-8072 | MS.gene05860:CDS | 30.0% |
| ! | TCATCAATTTCGTTTTACAC+AGG | - | 57351:8260-8279 | MS.gene05860:CDS | 30.0% |
| ! | TGATTGGTATGTATCTCTTT+TGG | - | 57351:7326-7345 | MS.gene05860:CDS | 30.0% |
| ! | TTCTAAAAAATGACGAGTCA+GGG | - | 57351:8327-8346 | MS.gene05860:CDS | 30.0% |
| ! | TTTGAAGATTTTTGCTAGGT+TGG | - | 57351:6828-6847 | MS.gene05860:CDS | 30.0% |
| !! | CAATTTGTTATCGTCTTCTA+GGG | - | 57351:6561-6580 | MS.gene05860:CDS | 30.0% |
| !! | TCAATTTGTTATCGTCTTCT+AGG | - | 57351:6560-6579 | MS.gene05860:CDS | 30.0% |
| !! | TTAGTTGATGACTTATCAAG+AGG | + | 57351:8704-8723 | MS.gene05860:intergenic | 30.0% |
| !!! | AGGTTTTGAAGATTTTTGCT+AGG | - | 57351:6824-6843 | MS.gene05860:CDS | 30.0% |
| AAGATCTTTACGAAGCTGAT+TGG | + | 57351:6446-6465 | MS.gene05860:intergenic | 35.0% | |
| AAGATGATTCTGTGAGAAGT+TGG | + | 57351:6186-6205 | MS.gene05860:intergenic | 35.0% | |
| AATGACAGCAATAACAACCT+TGG | + | 57351:6698-6717 | MS.gene05860:intergenic | 35.0% | |
| ATAAGTATCCTGATGCTGTT+AGG | - | 57351:6629-6648 | MS.gene05860:CDS | 35.0% | |
| ATCGTTGAAGGAAATTGAAG+CGG | + | 57351:6398-6417 | MS.gene05860:intergenic | 35.0% | |
| ATGACAGCAATAACAACCTT+GGG | + | 57351:6697-6716 | MS.gene05860:intergenic | 35.0% | |
| ATGATTCCTCATTGCCAAAA+GGG | - | 57351:7360-7379 | MS.gene05860:CDS | 35.0% | |
| GATCCTAATCTTAGGTATCT+TGG | - | 57351:7030-7049 | MS.gene05860:CDS | 35.0% | |
| GGATGCTGTGATTAAATCTT+TGG | - | 57351:7110-7129 | MS.gene05860:CDS | 35.0% | |
| GGTAAAGAGAAGATTGTTGA+AGG | - | 57351:8851-8870 | MS.gene05860:CDS | 35.0% | |
| TAAGTATCCTGATGCTGTTA+GGG | - | 57351:6630-6649 | MS.gene05860:CDS | 35.0% | |
| TCAACTTATGAACAGGATGA+GGG | - | 57351:7801-7820 | MS.gene05860:CDS | 35.0% | |
| TGAAGGTTCAACTTATGAAC+AGG | - | 57351:7794-7813 | MS.gene05860:CDS | 35.0% | |
| TGTGAGCATATTAGAAGATC+TGG | - | 57351:6895-6914 | MS.gene05860:CDS | 35.0% | |
| TTCAACTTATGAACAGGATG+AGG | - | 57351:7800-7819 | MS.gene05860:CDS | 35.0% | |
| TTCGAAAATTAGGGAGTTGT+TGG | - | 57351:6999-7018 | MS.gene05860:CDS | 35.0% | |
| TTGATCAGGATCCTAATCTT+AGG | - | 57351:7022-7041 | MS.gene05860:CDS | 35.0% | |
| TTGATTGATCCTGCATTGTT+GGG | - | 57351:7468-7487 | MS.gene05860:CDS | 35.0% | |
| TTTCTGTGAACTTAGTTCCA+AGG | - | 57351:6723-6742 | MS.gene05860:CDS | 35.0% | |
| ! | AAGGTTGTTATTGCTGTCAT+TGG | - | 57351:6697-6716 | MS.gene05860:CDS | 35.0% |
| ! | AATATAATCCATGCCGCTTA+CGG | + | 57351:8385-8404 | MS.gene05860:intergenic | 35.0% |
| ! | ATGCTAGATTACAGCTTGTT+CGG | - | 57351:7430-7449 | MS.gene05860:CDS | 35.0% |
| ! | CTTCTAAAAAATGACGAGTC+AGG | - | 57351:8326-8345 | MS.gene05860:CDS | 35.0% |
| ! | TCAATTTCGTTTTACACAGG+AGG | - | 57351:8263-8282 | MS.gene05860:CDS | 35.0% |
| ! | TCTCAATTTCTTCACCCTTT+TGG | + | 57351:7377-7396 | MS.gene05860:intergenic | 35.0% |
| ! | TCTTTAAGAGCTAATCCATC+TGG | + | 57351:8194-8213 | MS.gene05860:intergenic | 35.0% |
| ! | TTTAGAAAGTTCTGATCCCA+AGG | - | 57351:6678-6697 | MS.gene05860:CDS | 35.0% |
| !! | AGTCACTTCTTTTGAAGAAG+AGG | - | 57351:8519-8538 | MS.gene05860:CDS | 35.0% |
| !! | GATTACTTTGAGACAAACTC+GGG | + | 57351:8682-8701 | MS.gene05860:intergenic | 35.0% |
| !! | GGATTACTTTGAGACAAACT+CGG | + | 57351:8683-8702 | MS.gene05860:intergenic | 35.0% |
| !!! | AAGCTATTGCTGTTGTTTTG+AGG | - | 57351:6599-6618 | MS.gene05860:CDS | 35.0% |
| !!! | AGCTATTGCTGTTGTTTTGA+GGG | - | 57351:6600-6619 | MS.gene05860:CDS | 35.0% |
| !!! | CGTCTTCTAGGGTTTTTATT+AGG | - | 57351:6572-6591 | MS.gene05860:CDS | 35.0% |
| AAACAAACCCTAACAGCATC+AGG | + | 57351:6640-6659 | MS.gene05860:intergenic | 40.0% | |
| AAATAAAAGGCCAGAGCCAA+GGG | - | 57351:8607-8626 | MS.gene05860:CDS | 40.0% | |
| AACCACGTTTAAGGGTGAAT+TGG | + | 57351:8948-8967 | MS.gene05860:intergenic | 40.0% | |
| AAGTCATCAACTAAGCGGAA+AGG | - | 57351:8710-8729 | MS.gene05860:CDS | 40.0% | |
| AATAAAGAGAGAAGACGGAG+AGG | - | 57351:8830-8849 | MS.gene05860:CDS | 40.0% | |
| AGTCATCAACTAAGCGGAAA+GGG | - | 57351:8711-8730 | MS.gene05860:CDS | 40.0% | |
| AGTTGGCGGTTTCGAAAATT+AGG | - | 57351:6989-7008 | MS.gene05860:CDS | 40.0% | |
| ATAAACATTCCTACCACACG+TGG | + | 57351:7289-7308 | MS.gene05860:intergenic | 40.0% | |
| ATCTTCATCAGAAGATTCGG+CGG | + | 57351:7847-7866 | MS.gene05860:intergenic | 40.0% | |
| CTCTTCCTTCACAAACGAAT+TGG | - | 57351:6364-6383 | MS.gene05860:CDS | 40.0% | |
| GAAATAGTGGCAACATGTGA+AGG | - | 57351:7777-7796 | MS.gene05860:CDS | 40.0% | |
| GATGATTCCTCATTGCCAAA+AGG | - | 57351:7359-7378 | MS.gene05860:CDS | 40.0% | |
| GGATTTGATGAGATCGTCTA+GGG | + | 57351:6155-6174 | MS.gene05860:intergenic | 40.0% | |
| GGTAACCAATTCGTTTGTGA+AGG | + | 57351:6372-6391 | MS.gene05860:intergenic | 40.0% | |
| GTTGATTGATCCTGCATTGT+TGG | - | 57351:7467-7486 | MS.gene05860:CDS | 40.0% | |
| GTTGGCGGTTTCGAAAATTA+GGG | - | 57351:6990-7009 | MS.gene05860:CDS | 40.0% | |
| GTTTGGGAAACCACGTTTAA+GGG | + | 57351:8956-8975 | MS.gene05860:intergenic | 40.0% | |
| TAAACTGCTCTTATTGACGG+AGG | + | 57351:7615-7634 | MS.gene05860:intergenic | 40.0% | |
| TACACATTACCCAACAATGC+AGG | + | 57351:7480-7499 | MS.gene05860:intergenic | 40.0% | |
| TCACATGTTGCCACTATTTC+AGG | + | 57351:7777-7796 | MS.gene05860:intergenic | 40.0% | |
| TGATAACTCTGGTCAGAATG+TGG | - | 57351:8064-8083 | MS.gene05860:CDS | 40.0% | |
| TGGATTTGATGAGATCGTCT+AGG | + | 57351:6156-6175 | MS.gene05860:intergenic | 40.0% | |
| TGGGTAATGTGTACTTGCAT+AGG | - | 57351:7487-7506 | MS.gene05860:CDS | 40.0% | |
| TGTTTGGGAAACCACGTTTA+AGG | + | 57351:8957-8976 | MS.gene05860:intergenic | 40.0% | |
| TTCCTTCAACGATTCAACAC+CGG | - | 57351:6405-6424 | MS.gene05860:CDS | 40.0% | |
| TTTGCTGGGGGATAATCATT+TGG | + | 57351:8437-8456 | MS.gene05860:intergenic | 40.0% | |
| TTTGTGAAGGAAGAGAGAAG+AGG | + | 57351:6359-6378 | MS.gene05860:intergenic | 40.0% | |
| ! | AGAGCATCAATGAGTTCAAG+TGG | + | 57351:7567-7586 | MS.gene05860:intergenic | 40.0% |
| ! | AGTCTGGAATTACTGGTGTT+TGG | + | 57351:8973-8992 | MS.gene05860:intergenic | 40.0% |
| ! | CAATGTGGTGGAGATATCTA+GGG | - | 57351:7197-7216 | MS.gene05860:CDS | 40.0% |
| ! | CTACTCGAATTGGGATTTTC+AGG | + | 57351:8806-8825 | MS.gene05860:intergenic | 40.0% |
| ! | GGTGCCATAAAAGATGTTCT+TGG | - | 57351:8644-8663 | MS.gene05860:CDS | 40.0% |
| ! | GTCTGGAATTACTGGTGTTT+GGG | + | 57351:8972-8991 | MS.gene05860:intergenic | 40.0% |
| ! | TCTCAGTCTTATCTGAAGCA+AGG | + | 57351:8409-8428 | MS.gene05860:intergenic | 40.0% |
| ! | TCTGAAGTAGTGCCAAATTG+AGG | + | 57351:8290-8309 | MS.gene05860:intergenic | 40.0% |
| ! | TGCTAGATTACAGCTTGTTC+GGG | - | 57351:7431-7450 | MS.gene05860:CDS | 40.0% |
| !! | CAATTTTAACCACGTGTGGT+AGG | - | 57351:7277-7296 | MS.gene05860:CDS | 40.0% |
| !! | GAATTGGGATTTTCAGGATC+AGG | + | 57351:8800-8819 | MS.gene05860:intergenic | 40.0% |
| !! | GCCCGAGTTTTATAGGATTT+TGG | - | 57351:6771-6790 | MS.gene05860:CDS | 40.0% |
| !! | GGTTCAATTTTAACCACGTG+TGG | - | 57351:7273-7292 | MS.gene05860:CDS | 40.0% |
| !! | TTGGTGATGAGAAGAAGAAC+CGG | + | 57351:6427-6446 | MS.gene05860:intergenic | 40.0% |
| !!! | GTAGGTGAGTTTTTGAAGTG+CGG | + | 57351:6275-6294 | MS.gene05860:intergenic | 40.0% |
| !!! | TTTTTGAAGTGCGGTGGATT+TGG | + | 57351:6266-6285 | MS.gene05860:intergenic | 40.0% |
| AAAAAGAGTAGCCACCGTCA+TGG | - | 57351:8899-8918 | MS.gene05860:CDS | 45.0% | |
| AAGATACGATCTCGGATCCT+TGG | + | 57351:6743-6762 | MS.gene05860:intergenic | 45.0% | |
| AAGTGACTGCTCTGTCAACT+TGG | + | 57351:8507-8526 | MS.gene05860:intergenic | 45.0% | |
| AATCTCACCACTACAGGTCT+GGG | + | 57351:8560-8579 | MS.gene05860:intergenic | 45.0% | |
| ACAATCCTCTTCCCTAACCT+AGG | + | 57351:6865-6884 | MS.gene05860:intergenic | 45.0% | |
| AGCCAATTCACCCTTAAACG+TGG | - | 57351:8943-8962 | MS.gene05860:CDS | 45.0% | |
| AGGGGAAGAATCTGATCAGA+AGG | - | 57351:8871-8890 | MS.gene05860:CDS | 45.0% | |
| ATTCGGCGGTTGAATTCCTT+GGG | + | 57351:7833-7852 | MS.gene05860:intergenic | 45.0% | |
| CAAATAAAAGGCCAGAGCCA+AGG | - | 57351:8606-8625 | MS.gene05860:CDS | 45.0% | |
| CACTGAAGCTCCTGAAATAG+TGG | - | 57351:7764-7783 | MS.gene05860:CDS | 45.0% | |
| CAGCACCAGGTCCAAATAAA+AGG | - | 57351:8594-8613 | MS.gene05860:CDS | 45.0% | |
| CCAAGGGACAATTCTCTTTC+TGG | - | 57351:8623-8642 | MS.gene05860:CDS | 45.0% | |
| CCAGAAAGAGAATTGTCCCT+TGG | + | 57351:8626-8645 | MS.gene05860:intergenic | 45.0% | |
| CCAGTCTCAATAAGTGCACA+GGG | - | 57351:8155-8174 | MS.gene05860:CDS | 45.0% | |
| CCATGGAATCGACATGTCAT+GGG | - | 57351:6306-6325 | MS.gene05860:CDS | 45.0% | |
| CGGAAAGGGAAGAAGAAACT+AGG | - | 57351:8725-8744 | MS.gene05860:CDS | 45.0% | |
| GGAAGAGTTACTGTACCAGA+TGG | - | 57351:8176-8195 | MS.gene05860:CDS | 45.0% | |
| GGGGAAGAATCTGATCAGAA+GGG | - | 57351:8872-8891 | MS.gene05860:CDS | 45.0% | |
| GTAGTGGTGAGATTGGATGA+TGG | - | 57351:8566-8585 | MS.gene05860:CDS | 45.0% | |
| TACACAGGAGGTCCTCAATT+TGG | - | 57351:8275-8294 | MS.gene05860:CDS | 45.0% | |
| TATTGACGGAGGCAAGAGAT+TGG | + | 57351:7604-7623 | MS.gene05860:intergenic | 45.0% | |
| TCACGAGTCTGCTGTTAAGT+TGG | - | 57351:6972-6991 | MS.gene05860:CDS | 45.0% | |
| TCATCCAATCTCACCACTAC+AGG | + | 57351:8566-8585 | MS.gene05860:intergenic | 45.0% | |
| TCCAGTCTCAATAAGTGCAC+AGG | - | 57351:8154-8173 | MS.gene05860:CDS | 45.0% | |
| TCCATGGAATCGACATGTCA+TGG | - | 57351:6305-6324 | MS.gene05860:CDS | 45.0% | |
| TGAAGGAAATTGAAGCGGCA+TGG | + | 57351:6393-6412 | MS.gene05860:intergenic | 45.0% | |
| TGAGTCTTTGCGGTTGTTGA+TGG | - | 57351:7158-7177 | MS.gene05860:CDS | 45.0% | |
| TGGTTCACTGACAGCAAATC+AGG | - | 57351:7974-7993 | MS.gene05860:CDS | 45.0% | |
| TTCCCTAACCTAGGTTCCAA+AGG | + | 57351:6856-6875 | MS.gene05860:intergenic | 45.0% | |
| TTGATGCTCTTGTACAGCCT+CGG | - | 57351:7577-7596 | MS.gene05860:CDS | 45.0% | |
| ! | AACCGGTGTTGAATCGTTGA+AGG | + | 57351:6410-6429 | MS.gene05860:intergenic | 45.0% |
| ! | GATATTGTGTGCTGCTGCTT+GGG | - | 57351:7509-7528 | MS.gene05860:CDS | 45.0% |
| ! | GCAATGTGGTGGAGATATCT+AGG | - | 57351:7196-7215 | MS.gene05860:CDS | 45.0% |
| ! | TAGGGAGTTGTTGGTTGATC+AGG | - | 57351:7008-7027 | MS.gene05860:CDS | 45.0% |
| ! | TATGGTCTCTGAGAGCAATG+TGG | - | 57351:7182-7201 | MS.gene05860:CDS | 45.0% |
| ! | TCTTCACCCTTTTGGCAATG+AGG | + | 57351:7369-7388 | MS.gene05860:intergenic | 45.0% |
| !! | ACTTTGAGACAAACTCGGGT+TGG | + | 57351:8678-8697 | MS.gene05860:intergenic | 45.0% |
| !! | CTCCTTTGGAACCTAGGTTA+GGG | - | 57351:6851-6870 | MS.gene05860:CDS | 45.0% |
| !! | GGTGGATTTGGTTTGTGGAT+CGG | + | 57351:6254-6273 | MS.gene05860:intergenic | 45.0% |
| !! | TCTGGCCTTTTATTTGGACC+TGG | + | 57351:8602-8621 | MS.gene05860:intergenic | 45.0% |
| !! | TGACATGTCGATTCCATGGA+TGG | + | 57351:6305-6324 | MS.gene05860:intergenic | 45.0% |
| !! | TTGACTTGGGGTCATTTGCT+GGG | + | 57351:8451-8470 | MS.gene05860:intergenic | 45.0% |
| !! | TTTGACTTGGGGTCATTTGC+TGG | + | 57351:8452-8471 | MS.gene05860:intergenic | 45.0% |
| !! | TTTGCGGTTGTTGATGGCTA+TGG | - | 57351:7164-7183 | MS.gene05860:CDS | 45.0% |
| !! | TTTTGCTAGGTTGGCTCCTT+TGG | - | 57351:6837-6856 | MS.gene05860:CDS | 45.0% |
| !!! | CGCTTGTTTTTGAGTGTGTG+AGG | - | 57351:6926-6945 | MS.gene05860:CDS | 45.0% |
| !!! | CTTGGCTCTGGCCTTTTATT+TGG | + | 57351:8608-8627 | MS.gene05860:intergenic | 45.0% |
| !!! | GATGCTTTTTCCGTGGAACT+TGG | - | 57351:8131-8150 | MS.gene05860:CDS | 45.0% |
| AATGAAGCCCAGACCTGTAG+TGG | - | 57351:8550-8569 | MS.gene05860:CDS | 50.0% | |
| ACTCTGGTCAGAATGTGGAC+AGG | - | 57351:8069-8088 | MS.gene05860:CDS | 50.0% | |
| AGAGAATTGTCCCTTGGCTC+TGG | + | 57351:8620-8639 | MS.gene05860:intergenic | 50.0% | |
| AGCACTGCCCACAAATGCTT+CGG | + | 57351:7081-7100 | MS.gene05860:intergenic | 50.0% | |
| AGGACATTACCTCGACAACG+TGG | + | 57351:6339-6358 | MS.gene05860:intergenic | 50.0% | |
| CAATCTCACCACTACAGGTC+TGG | + | 57351:8561-8580 | MS.gene05860:intergenic | 50.0% | |
| CAGACCTGTAGTGGTGAGAT+TGG | - | 57351:8559-8578 | MS.gene05860:CDS | 50.0% | |
| CATTACCTCGACAACGTGGA+AGG | + | 57351:6335-6354 | MS.gene05860:intergenic | 50.0% | |
| CCCTGTGCACTTATTGAGAC+TGG | + | 57351:8158-8177 | MS.gene05860:intergenic | 50.0% | |
| CCTTGCTTGAACACCGTAAG+CGG | - | 57351:8369-8388 | MS.gene05860:CDS | 50.0% | |
| CTATAAAACTCGGGCGCCAA+CGG | + | 57351:6766-6785 | MS.gene05860:intergenic | 50.0% | |
| GATTCGGCGGTTGAATTCCT+TGG | + | 57351:7834-7853 | MS.gene05860:intergenic | 50.0% | |
| GCCAACGGAAGATACGATCT+CGG | + | 57351:6751-6770 | MS.gene05860:intergenic | 50.0% | |
| GTGGGCAGTGCTAGAGAATA+AGG | - | 57351:7089-7108 | MS.gene05860:CDS | 50.0% | |
| TCCGAGATCGTATCTTCCGT+TGG | - | 57351:6747-6766 | MS.gene05860:CDS | 50.0% | |
| TGAGACTGGACCAAGTTCCA+CGG | + | 57351:8144-8163 | MS.gene05860:intergenic | 50.0% | |
| TGGAACCTAGGTTAGGGAAG+AGG | - | 57351:6857-6876 | MS.gene05860:CDS | 50.0% | |
| TGTGAGAAGTTGGAGTCGCA+TGG | + | 57351:6176-6195 | MS.gene05860:intergenic | 50.0% | |
| ! | AGGATGAGGGCTTTAACCCA+AGG | - | 57351:7814-7833 | MS.gene05860:CDS | 50.0% |
| ! | GAGTTTTACGCCTGCCATGA+CGG | + | 57351:8916-8935 | MS.gene05860:intergenic | 50.0% |
| ! | GGATATTGTGTGCTGCTGCT+TGG | - | 57351:7508-7527 | MS.gene05860:CDS | 50.0% |
| ! | TGACTTGGGGTCATTTGCTG+GGG | + | 57351:8450-8469 | MS.gene05860:intergenic | 50.0% |
| ! | TGAGATCGTCTAGGGTTCGT+TGG | + | 57351:6147-6166 | MS.gene05860:intergenic | 50.0% |
| ! | TGCTACGCCGAAGCATTTGT+GGG | - | 57351:7071-7090 | MS.gene05860:CDS | 50.0% |
| ! | TTGCTACGCCGAAGCATTTG+TGG | - | 57351:7070-7089 | MS.gene05860:CDS | 50.0% |
| !! | AGTGCGGTGGATTTGGTTTG+TGG | + | 57351:6259-6278 | MS.gene05860:intergenic | 50.0% |
| !! | CATGTCGATTCCATGGATGG+AGG | + | 57351:6302-6321 | MS.gene05860:intergenic | 50.0% |
| !! | CCCATGACATGTCGATTCCA+TGG | + | 57351:6309-6328 | MS.gene05860:intergenic | 50.0% |
| !! | CGAGTCTGCTGTTAAGTTGG+CGG | - | 57351:6975-6994 | MS.gene05860:CDS | 50.0% |
| !! | GAAGGTACTTCATCCTCACG+TGG | - | 57351:7693-7712 | MS.gene05860:CDS | 50.0% |
| !! | GCTCCTTTGGAACCTAGGTT+AGG | - | 57351:6850-6869 | MS.gene05860:CDS | 50.0% |
| !! | GGATTTGGTTTGTGGATCGG+TGG | + | 57351:6251-6270 | MS.gene05860:intergenic | 50.0% |
| !! | GTTCCACGGAAAAAGCATCG+CGG | + | 57351:8130-8149 | MS.gene05860:intergenic | 50.0% |
| !!! | GGTGAGTTTTTGAAGTGCGG+TGG | + | 57351:6272-6291 | MS.gene05860:intergenic | 50.0% |
| ACCTACCTCTCCTCCATCCA+TGG | - | 57351:6289-6308 | MS.gene05860:CDS | 55.0% | |
| CCGCTTACGGTGTTCAAGCA+AGG | + | 57351:8372-8391 | MS.gene05860:intergenic | 55.0% | |
| CGATTCCATGGATGGAGGAG+AGG | + | 57351:6297-6316 | MS.gene05860:intergenic | 55.0% | |
| CTTGAACACCGTAAGCGGCA+TGG | - | 57351:8374-8393 | MS.gene05860:CDS | 55.0% | |
| GGTACTTCATCCTCACGTGG+TGG | - | 57351:7696-7715 | MS.gene05860:CDS | 55.0% | |
| TCCATGGATGGAGGAGAGGT+AGG | + | 57351:6293-6312 | MS.gene05860:intergenic | 55.0% | |
| ! | ATCCTCACGTGGTGGCGAAT+TGG | - | 57351:7704-7723 | MS.gene05860:CDS | 55.0% |
| ! | GACTTGGGGTCATTTGCTGG+GGG | + | 57351:8449-8468 | MS.gene05860:intergenic | 55.0% |
| ! | GGTCTCTGAGAGCAATGTGG+TGG | - | 57351:7185-7204 | MS.gene05860:CDS | 55.0% |
| ! | TTTTACGCCTGCCATGACGG+TGG | + | 57351:8913-8932 | MS.gene05860:intergenic | 55.0% |
| !! | CACGGAAAAAGCATCGCGGA+TGG | + | 57351:8126-8145 | MS.gene05860:intergenic | 55.0% |
| !! | CGTTGGCGCCCGAGTTTTAT+AGG | - | 57351:6764-6783 | MS.gene05860:CDS | 55.0% |
| !! | GATGATGGAGATGCAGCACC+AGG | - | 57351:8581-8600 | MS.gene05860:CDS | 55.0% |
| !! | GGTTGGCTCCTTTGGAACCT+AGG | - | 57351:6845-6864 | MS.gene05860:CDS | 55.0% |
| !!! | CATCCGCGATGCTTTTTCCG+TGG | - | 57351:8124-8143 | MS.gene05860:CDS | 55.0% |
| AGAGTAGCCACCGTCATGGC+AGG | - | 57351:8903-8922 | MS.gene05860:CDS | 60.0% | |
| AGCCAATTCGCCACCACGTG+AGG | + | 57351:7709-7728 | MS.gene05860:intergenic | 60.0% | |
| GGCTTCCTTCCACGTTGTCG+AGG | - | 57351:6327-6346 | MS.gene05860:CDS | 60.0% | |
| ! | CGTGGTGGCGAATTGGCTAG+CGG | - | 57351:7711-7730 | MS.gene05860:CDS | 60.0% |
| ! | GGAGGCAAGAGATTGGTCCG+AGG | + | 57351:7597-7616 | MS.gene05860:intergenic | 60.0% |
| ! | TGTGCTGCTGCTTGGGTTGC+TGG | - | 57351:7516-7535 | MS.gene05860:CDS | 60.0% |
| ATCACGCGCGAGGTCGAGAG+TGG | + | 57351:6524-6543 | MS.gene05860:intergenic | 65.0% | |
| CAGGAGTGAGATCACGCGCG+AGG | + | 57351:6534-6553 | MS.gene05860:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57351 | gene | 6103 | 9003 | 6103 | ID=MS.gene05860 |
| 57351 | mRNA | 6103 | 9003 | 6103 | ID=MS.gene05860.t1;Parent=MS.gene05860 |
| 57351 | exon | 6103 | 9003 | 6103 | ID=MS.gene05860.t1.exon1;Parent=MS.gene05860.t1 |
| 57351 | CDS | 6103 | 9003 | 6103 | ID=cds.MS.gene05860.t1;Parent=MS.gene05860.t1 |
| Gene Sequence |
| Protein sequence |
