AlfalfaGEDB | MS.gene05860

M. sativa cultivar XinJiangDaYe / MS.gene05860

KEGG: K12396
GO: GO:0005575 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0016192 GO:0030117 GO:0030119 GO:0030123 GO:0032991 GO:0033036 GO:0042886 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0071702 GO:0071705 GO:0098796
PFAM: PF01602.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05860.t1	XP_003630870.1	96.2	969	33	2	1	966	1	968	0.00E+00	1708.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05860.t1	Q9C744	55.2	859	310	7	4	854	3	794	9.7e-247	854.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05860.t1	G7L9R3	96.2	969	33	2	1	966	1	968	0.0e+00	1708.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049411	MS.gene05860	0.82719	1.79E-54	-1.69E-46
MS.gene05859	MS.gene05860	0.99605	7.92E-223	-1.69E-46
MS.gene05860	MS.gene05970	0.965676	6.49E-125	-1.69E-46
MS.gene05860	MS.gene05971	0.967219	5.62E-127	-1.69E-46
MS.gene05860	MS.gene059778	0.852743	3.78E-61	-1.69E-46
MS.gene05860	MS.gene064425	0.833155	6.27E-56	-1.69E-46
MS.gene05860	MS.gene066055	0.802921	4.46E-49	-1.69E-46
MS.gene05860	MS.gene068001	0.815297	9.94E-52	-1.69E-46
MS.gene05860	MS.gene20934	0.800692	1.28E-48	-1.69E-46
MS.gene05860	MS.gene21114	0.8109	9.16E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene011991	MS.gene05860	PPI
MS.gene036995	MS.gene05860	PPI
MS.gene060477	MS.gene05860	PPI
MS.gene08515	MS.gene05860	PPI
MS.gene82003	MS.gene05860	PPI
MS.gene84170	MS.gene05860	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05860.t1	MTR_8g104380	96.904	969	26	2	1	966	1	968	0.0	1910
MS.gene05860.t1	MTR_5g034780	23.832	428	279	9	18	412	10	423	1.25e-27	120
MS.gene05860.t1	MTR_2g084610	21.805	532	354	16	36	522	29	543	2.26e-20	97.8
MS.gene05860.t1	MTR_8g072250	24.740	384	262	8	20	379	27	407	9.94e-18	89.4
MS.gene05860.t1	MTR_8g063690	30.909	165	111	2	18	180	10	173	1.03e-15	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05860.t1	AT1G48760	71.132	530	153	0	4	533	3	532	0.0	816
MS.gene05860.t1	AT1G48760	34.211	380	169	11	608	966	550	869	9.73e-41	162
MS.gene05860.t1	AT1G48760	71.132	530	153	0	4	533	3	532	0.0	816
MS.gene05860.t1	AT1G48760	34.211	380	169	11	608	966	550	869	9.73e-41	162
MS.gene05860.t1	AT1G48760	71.132	530	153	0	4	533	3	532	0.0	816
MS.gene05860.t1	AT1G48760	34.211	380	169	11	608	966	550	869	9.73e-41	162
MS.gene05860.t1	AT1G60070	23.689	515	329	12	18	493	10	499	3.75e-29	125
MS.gene05860.t1	AT1G60070	23.689	515	329	12	18	493	10	499	3.93e-29	125
MS.gene05860.t1	AT1G23900	22.957	514	332	11	18	492	10	498	2.99e-26	116
MS.gene05860.t1	AT1G23900	22.957	514	332	11	18	492	10	498	2.99e-26	116

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Find 0 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAGATACCTAAGATT+AGG	+	57351:7036-7055	MS.gene05860:intergenic	30.0%
AAGTACCTTCATCTTTATCA+AGG	+	57351:7683-7702	MS.gene05860:intergenic	30.0%
AAGTGAAGCATGAAAATGAT+TGG	+	57351:6476-6495	MS.gene05860:intergenic	30.0%
ACCAAAATCCTATAAAACTC+GGG	+	57351:6775-6794	MS.gene05860:intergenic	30.0%
ATAAAAGATGTTCTTGGAAG+TGG	-	57351:8650-8669	MS.gene05860:CDS	30.0%
ATGTAAACTGCTCTTATTGA+CGG	+	57351:7618-7637	MS.gene05860:intergenic	30.0%
CATATCTTCATCAGAAGATT+CGG	+	57351:7850-7869	MS.gene05860:intergenic	30.0%
CTTCTAATATGCTCACAAAT+AGG	+	57351:6892-6911	MS.gene05860:intergenic	30.0%
GACGATTTAAAAGCAATATG+TGG	-	57351:8221-8240	MS.gene05860:CDS	30.0%
GAGAATCAGCTTATTGATAT+TGG	-	57351:7393-7412	MS.gene05860:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
57351	gene	6103	9003	6103	ID=MS.gene05860
57351	mRNA	6103	9003	6103	ID=MS.gene05860.t1;Parent=MS.gene05860
57351	exon	6103	9003	6103	ID=MS.gene05860.t1.exon1;Parent=MS.gene05860.t1
57351	CDS	6103	9003	6103	ID=cds.MS.gene05860.t1;Parent=MS.gene05860.t1

Gene Sequence

>MS.gene05860

ATGGCGGGTTCTTCATCTTCTTCAATCATGGACAATCTCTTCCAACGAACCCTAGACGATCTCATCAAATCCATGCGACTCCAACTTCTCACAGAATCATCTTTCATCTCTAAATCAATCGAAGAAATTCGTCGCGAAATCAAATCCACCGATCCACAAACCAAATCCACCGCACTTCAAAAACTCACCTACCTCTCCTCCATCCATGGAATCGACATGTCATGGGCTTCCTTCCACGTTGTCGAGGTAATGTCCTCTTCTCTCTTCCTTCACAAACGAATTGGTTACCATGCCGCTTCAATTTCCTTCAACGATTCAACACCGGTTCTTCTTCTCATCACCAATCAGCTTCGTAAAGATCTTTCTTCAACCAATCATTTTCATGCTTCACTTGCGCTTCATTGTTTATCAACAATCGCCACTCTCGACCTCGCGCGTGATCTCACTCCTGATATCTTCAATTTGTTATCGTCTTCTAGGGTTTTTATTAGGAATAAAGCTATTGCTGTTGTTTTGAGGGTTTTTGATAAGTATCCTGATGCTGTTAGGGTTTGTTTTAAAAGATTGGTTGAGAATTTAGAAAGTTCTGATCCCAAGGTTGTTATTGCTGTCATTGGTGTTTTCTGTGAACTTAGTTCCAAGGATCCGAGATCGTATCTTCCGTTGGCGCCCGAGTTTTATAGGATTTTGGTTGATTCTAAGAATAATTGGGTTCTTATTAAGGTTTTGAAGATTTTTGCTAGGTTGGCTCCTTTGGAACCTAGGTTAGGGAAGAGGATTGTTGAACCTATTTGTGAGCATATTAGAAGATCTGGAGCAAAATCGCTTGTTTTTGAGTGTGTGAGGACTGTGATTACTAGTTTAAGTGATCACGAGTCTGCTGTTAAGTTGGCGGTTTCGAAAATTAGGGAGTTGTTGGTTGATCAGGATCCTAATCTTAGGTATCTTGGTTTGCATGCGCTTTCAGTTGCTACGCCGAAGCATTTGTGGGCAGTGCTAGAGAATAAGGATGCTGTGATTAAATCTTTGGATGATGAGGATTCAAATATTAAAATTGAGTCTTTGCGGTTGTTGATGGCTATGGTCTCTGAGAGCAATGTGGTGGAGATATCTAGGGTGTTGCTTAATTATGCATTGAAGTCTGATCCAGAATTTTGCAATGAGATTTTGGGTTCAATTTTAACCACGTGTGGTAGGAATGTTTATGAGATCATTGTTGATTTTGATTGGTATGTATCTCTTTTGGGAGAAATGACGATGATTCCTCATTGCCAAAAGGGTGAAGAAATTGAGAATCAGCTTATTGATATTGGTATGAGAGTTAAGGATGCTAGATTACAGCTTGTTCGGGTTGCTCGCGATCTGTTGATTGATCCTGCATTGTTGGGTAATGTGTACTTGCATAGGATATTGTGTGCTGCTGCTTGGGTTGCTGGAGAGTATGTACAGCTTGCGAGCAATCCACTTGAACTCATTGATGCTCTTGTACAGCCTCGGACCAATCTCTTGCCTCCGTCAATAAGAGCAGTTTACATCAATTCTGTTCTTAAAGTTTTAAGTTTTTGTCTGGAGTGTTACCTTGATAAAGATGAAGGTACTTCATCCTCACGTGGTGGCGAATTGGCTAGCGGACAGTCAGAAATGTTTGTTGTAAAAAATGACACTGAAGCTCCTGAAATAGTGGCAACATGTGAAGGTTCAACTTATGAACAGGATGAGGGCTTTAACCCAAGGAATTCAACCGCCGAATCTTCTGATGAAGATATGTATGTTGAAAACGACACAGATAGAGTTGTCACTCTTTCGTCAAAAAAGAAAAATTTCACACATGAATCTGTTGTAAACCTATTAAATCGAATTGAATTAATTTTTGGTTCACTGACAGCAAATCAGGATGTTGAAGTACTAGAGAGAGCGCGAAACATATTTGCCTTTGTACAGTTGATTAAAGCAGAAATAATTGATAACTCTGGTCAGAATGTGGACAGGAAATATTCTCAAGTTTCAACTGTTATCAAATCCATCCGCGATGCTTTTTCCGTGGAACTTGGTCCAGTCTCAATAAGTGCACAGGGAAGAGTTACTGTACCAGATGGATTAGCTCTTAAAGAGAATCTTGACGATTTAAAAGCAATATGTGGTGATATCGAGCTACCTTCATCAATTTCGTTTTACACAGGAGGTCCTCAATTTGGCACTACTTCAGATGCTTCTTCGTCTAATCTTCTAAAAAATGACGAGTCAGGGCAATCAAATGAATCTACATCCTTGCTTGAACACCGTAAGCGGCATGGATTATATTACCTTGCTTCAGATAAGACTGAGATTGTTCCAAATGATTATCCCCCAGCAAATGACCCCAAGTCAAACAGTAATATAAATGATGAAGCTGATGAGCTAACCAAGTTGACAGAGCAGTCACTTCTTTTGAAGAAGAGGACAAATCAAATGAAGCCCAGACCTGTAGTGGTGAGATTGGATGATGGAGATGCAGCACCAGGTCCAAATAAAAGGCCAGAGCCAAGGGACAATTCTCTTTCTGGTGCCATAAAAGATGTTCTTGGAAGTGGAACCAACCCGAGTTTGTCTCAAAGTAATCCTCTTGATAAGTCATCAACTAAGCGGAAAGGGAAGAAGAAACTAGGCACAGATCTTCCATCTGAAATGAAAGAAAATCTTGGTGATGCAGAAAAGCCTGATCCTGAAAATCCCAATTCGAGTAGCAAAAATAAAGAGAGAAGACGGAGAGGTAAAGAGAAGATTGTTGAAGGGGAAGAATCTGATCAGAAGGGAAAGAAAAAGAGTAGCCACCGTCATGGCAGGCGTAAAACTCATCAAAGAGCCAATTCACCCTTAAACGTGGTTTCCCAAACACCAGTAATTCCAGACTTTCTTTTGTAG

Protein sequence

>MS.gene05860.t1

MAGSSSSSIMDNLFQRTLDDLIKSMRLQLLTESSFISKSIEEIRREIKSTDPQTKSTALQKLTYLSSIHGIDMSWASFHVVEVMSSSLFLHKRIGYHAASISFNDSTPVLLLITNQLRKDLSSTNHFHASLALHCLSTIATLDLARDLTPDIFNLLSSSRVFIRNKAIAVVLRVFDKYPDAVRVCFKRLVENLESSDPKVVIAVIGVFCELSSKDPRSYLPLAPEFYRILVDSKNNWVLIKVLKIFARLAPLEPRLGKRIVEPICEHIRRSGAKSLVFECVRTVITSLSDHESAVKLAVSKIRELLVDQDPNLRYLGLHALSVATPKHLWAVLENKDAVIKSLDDEDSNIKIESLRLLMAMVSESNVVEISRVLLNYALKSDPEFCNEILGSILTTCGRNVYEIIVDFDWYVSLLGEMTMIPHCQKGEEIENQLIDIGMRVKDARLQLVRVARDLLIDPALLGNVYLHRILCAAAWVAGEYVQLASNPLELIDALVQPRTNLLPPSIRAVYINSVLKVLSFCLECYLDKDEGTSSSRGGELASGQSEMFVVKNDTEAPEIVATCEGSTYEQDEGFNPRNSTAESSDEDMYVENDTDRVVTLSSKKKNFTHESVVNLLNRIELIFGSLTANQDVEVLERARNIFAFVQLIKAEIIDNSGQNVDRKYSQVSTVIKSIRDAFSVELGPVSISAQGRVTVPDGLALKENLDDLKAICGDIELPSSISFYTGGPQFGTTSDASSSNLLKNDESGQSNESTSLLEHRKRHGLYYLASDKTEIVPNDYPPANDPKSNSNINDEADELTKLTEQSLLLKKRTNQMKPRPVVVRLDDGDAAPGPNKRPEPRDNSLSGAIKDVLGSGTNPSLSQSNPLDKSSTKRKGKKKLGTDLPSEMKENLGDAEKPDPENPNSSSKNKERRRRGKEKIVEGEESDQKGKKKSSHRHGRRKTHQRANSPLNVVSQTPVIPDFLL