Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05970.t1 | XP_003630870.1 | 96.2 | 962 | 33 | 2 | 1 | 959 | 1 | 961 | 0.00E+00 | 1693.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05970.t1 | Q9C744 | 55.2 | 859 | 310 | 7 | 4 | 854 | 3 | 794 | 9.6e-247 | 854.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05970.t1 | G7L9R3 | 96.2 | 962 | 33 | 2 | 1 | 959 | 1 | 961 | 0.0e+00 | 1693.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053536 | MS.gene05970 | 0.806347 | 8.60E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene05970 | 0.803313 | 3.70E-49 | -1.69E-46 |
| MS.gene054999 | MS.gene05970 | 0.828904 | 6.94E-55 | -1.69E-46 |
| MS.gene05859 | MS.gene05970 | 0.965247 | 2.34E-124 | -1.69E-46 |
| MS.gene05860 | MS.gene05970 | 0.965676 | 6.49E-125 | -1.69E-46 |
| MS.gene05894 | MS.gene05970 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene05970 | MS.gene05971 | 0.995549 | 2.18E-217 | -1.69E-46 |
| MS.gene05970 | MS.gene059778 | 0.831357 | 1.75E-55 | -1.69E-46 |
| MS.gene05970 | MS.gene061773 | 0.812743 | 3.64E-51 | -1.69E-46 |
| MS.gene05970 | MS.gene061774 | 0.80212 | 6.52E-49 | -1.69E-46 |
| MS.gene05970 | MS.gene064425 | 0.81667 | 4.91E-52 | -1.69E-46 |
| MS.gene05970 | MS.gene066010 | 0.810309 | 1.23E-50 | -1.69E-46 |
| MS.gene05970 | MS.gene09934 | 0.813424 | 2.58E-51 | -1.69E-46 |
| MS.gene05970 | MS.gene26465 | 0.801853 | 7.40E-49 | -1.69E-46 |
| MS.gene05970 | MS.gene27330 | 0.802956 | 4.39E-49 | -1.69E-46 |
| MS.gene05970 | MS.gene39297 | 0.840827 | 6.88E-58 | -1.69E-46 |
| MS.gene05970 | MS.gene45937 | 0.834522 | 2.86E-56 | -1.69E-46 |
| MS.gene05970 | MS.gene52996 | 0.810461 | 1.14E-50 | -1.69E-46 |
| MS.gene05970 | MS.gene58351 | 0.824932 | 6.17E-54 | -1.69E-46 |
| MS.gene05970 | MS.gene71176 | 0.805414 | 1.35E-49 | -1.69E-46 |
| MS.gene05970 | MS.gene71884 | 0.832114 | 1.14E-55 | -1.69E-46 |
| MS.gene05970 | MS.gene92988 | 0.804088 | 2.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011991 | MS.gene05970 | PPI |
| MS.gene036995 | MS.gene05970 | PPI |
| MS.gene060477 | MS.gene05970 | PPI |
| MS.gene08515 | MS.gene05970 | PPI |
| MS.gene84170 | MS.gene05970 | PPI |
| MS.gene82003 | MS.gene05970 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05970.t1 | MTR_8g104380 | 96.881 | 962 | 26 | 2 | 1 | 959 | 1 | 961 | 0.0 | 1898 |
| MS.gene05970.t1 | MTR_5g034780 | 23.832 | 428 | 279 | 9 | 18 | 412 | 10 | 423 | 1.41e-27 | 120 |
| MS.gene05970.t1 | MTR_2g084610 | 21.805 | 532 | 354 | 16 | 36 | 522 | 29 | 543 | 3.51e-20 | 97.1 |
| MS.gene05970.t1 | MTR_8g072250 | 24.740 | 384 | 262 | 8 | 20 | 379 | 27 | 407 | 8.79e-18 | 89.4 |
| MS.gene05970.t1 | MTR_8g063690 | 30.909 | 165 | 111 | 2 | 18 | 180 | 10 | 173 | 9.81e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05970.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene05970.t1 | AT1G48760 | 39.474 | 266 | 121 | 7 | 608 | 854 | 550 | 794 | 5.73e-40 | 160 |
| MS.gene05970.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene05970.t1 | AT1G48760 | 39.474 | 266 | 121 | 7 | 608 | 854 | 550 | 794 | 5.73e-40 | 160 |
| MS.gene05970.t1 | AT1G48760 | 71.132 | 530 | 153 | 0 | 4 | 533 | 3 | 532 | 0.0 | 816 |
| MS.gene05970.t1 | AT1G48760 | 39.474 | 266 | 121 | 7 | 608 | 854 | 550 | 794 | 5.73e-40 | 160 |
| MS.gene05970.t1 | AT1G60070 | 23.689 | 515 | 329 | 12 | 18 | 493 | 10 | 499 | 4.95e-29 | 125 |
| MS.gene05970.t1 | AT1G60070 | 23.689 | 515 | 329 | 12 | 18 | 493 | 10 | 499 | 5.37e-29 | 125 |
| MS.gene05970.t1 | AT1G23900 | 22.957 | 514 | 332 | 11 | 18 | 492 | 10 | 498 | 2.97e-26 | 116 |
| MS.gene05970.t1 | AT1G23900 | 22.957 | 514 | 332 | 11 | 18 | 492 | 10 | 498 | 2.97e-26 | 116 |
| MS.gene05970.t1 | AT1G23900 | 22.892 | 498 | 322 | 10 | 32 | 492 | 14 | 486 | 1.22e-25 | 114 |
| MS.gene05970.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene05970.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene05970.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene05970.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene05970.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene05970.t1 | AT5G22770 | 24.008 | 479 | 301 | 14 | 48 | 484 | 42 | 499 | 3.42e-22 | 103 |
| MS.gene05970.t1 | AT5G22780 | 24.268 | 478 | 301 | 14 | 48 | 484 | 42 | 499 | 6.90e-22 | 102 |
| MS.gene05970.t1 | AT5G22780 | 24.268 | 478 | 301 | 14 | 48 | 484 | 42 | 499 | 6.90e-22 | 102 |
| MS.gene05970.t1 | AT1G31730 | 23.451 | 452 | 302 | 10 | 61 | 481 | 72 | 510 | 1.04e-21 | 102 |
| MS.gene05970.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 920 | 1088 | 3.54e-11 | 68.2 |
| MS.gene05970.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 869 | 1037 | 4.26e-11 | 67.8 |
| MS.gene05970.t1 | AT1G23935 | 27.807 | 187 | 115 | 4 | 17 | 201 | 870 | 1038 | 4.44e-11 | 67.8 |
Find 0 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTCAATTCGATTTAAT+AGG | - | 57354:4881-4900 | MS.gene05970:intergenic | 15.0% |
| !!! | AATCGAATTGAATTAATTTT+TGG | + | 57354:4885-4904 | MS.gene05970:CDS | 15.0% |
| !! | ATATTAAAATTGAGTCTTTG+CGG | + | 57354:4079-4098 | MS.gene05970:CDS | 20.0% |
| !! | ATTTATATTACTGTTTGACT+TGG | - | 57354:5396-5415 | MS.gene05970:intergenic | 20.0% |
| !!! | TAAAGTTTTAAGTTTTTGTC+TGG | + | 57354:4581-4600 | MS.gene05970:CDS | 20.0% |
| !!! | TTTATATTACTGTTTGACTT+GGG | - | 57354:5395-5414 | MS.gene05970:intergenic | 20.0% |
| ! | AAAATCTCATTGCAAAATTC+TGG | - | 57354:4183-4202 | MS.gene05970:intergenic | 25.0% |
| ! | AACCAAAATCCTATAAAACT+CGG | - | 57354:3707-3726 | MS.gene05970:intergenic | 25.0% |
| ! | GAATAATTGGGTTCTTATTA+AGG | + | 57354:3735-3754 | MS.gene05970:CDS | 25.0% |
| ! | GATAACAAATTGAAGATATC+AGG | - | 57354:3484-3503 | MS.gene05970:intergenic | 25.0% |
| !! | AGAATTTTGCAATGAGATTT+TGG | + | 57354:4182-4201 | MS.gene05970:CDS | 25.0% |
| !! | AGATTTTCTTTCATTTCAGA+TGG | - | 57354:5692-5711 | MS.gene05970:intergenic | 25.0% |
| !! | GAATTTTGCAATGAGATTTT+GGG | + | 57354:4183-4202 | MS.gene05970:CDS | 25.0% |
| !! | GGTTGATTCTAAGAATAATT+GGG | + | 57354:3723-3742 | MS.gene05970:CDS | 25.0% |
| !! | TCTGAAATGAAAGAAAATCT+TGG | + | 57354:5692-5711 | MS.gene05970:CDS | 25.0% |
| !! | TGGTTGATTCTAAGAATAAT+TGG | + | 57354:3722-3741 | MS.gene05970:CDS | 25.0% |
| !!! | AGATCATTGTTGATTTTGAT+TGG | + | 57354:4241-4260 | MS.gene05970:CDS | 25.0% |
| !!! | TAGGGTTTGTTTTAAAAGAT+TGG | + | 57354:3579-3598 | MS.gene05970:CDS | 25.0% |
| !!! | TTATATTACTGTTTGACTTG+GGG | - | 57354:5394-5413 | MS.gene05970:intergenic | 25.0% |
| !!! | TTATTTTTGCTACTCGAATT+GGG | - | 57354:5746-5765 | MS.gene05970:intergenic | 25.0% |
| !!! | TTTATTTTTGCTACTCGAAT+TGG | - | 57354:5747-5766 | MS.gene05970:intergenic | 25.0% |
| AAACCAAGATACCTAAGATT+AGG | - | 57354:3967-3986 | MS.gene05970:intergenic | 30.0% | |
| AAGTACCTTCATCTTTATCA+AGG | - | 57354:4614-4633 | MS.gene05970:intergenic | 30.0% | |
| AAGTGAAGCATGAAAATGAT+TGG | - | 57354:3407-3426 | MS.gene05970:intergenic | 30.0% | |
| ACCAAAATCCTATAAAACTC+GGG | - | 57354:3706-3725 | MS.gene05970:intergenic | 30.0% | |
| ATAAAAGATGTTCTTGGAAG+TGG | + | 57354:5581-5600 | MS.gene05970:CDS | 30.0% | |
| ATGTAAACTGCTCTTATTGA+CGG | - | 57354:4549-4568 | MS.gene05970:intergenic | 30.0% | |
| CATATCTTCATCAGAAGATT+CGG | - | 57354:4781-4800 | MS.gene05970:intergenic | 30.0% | |
| CTTCTAATATGCTCACAAAT+AGG | - | 57354:3823-3842 | MS.gene05970:intergenic | 30.0% | |
| GACGATTTAAAAGCAATATG+TGG | + | 57354:5152-5171 | MS.gene05970:CDS | 30.0% | |
| GAGAATCAGCTTATTGATAT+TGG | + | 57354:4324-4343 | MS.gene05970:CDS | 30.0% | |
| GATTAAATCTTTGGATGATG+AGG | + | 57354:4050-4069 | MS.gene05970:CDS | 30.0% | |
| GCAAAAATAAAGAGAGAAGA+CGG | + | 57354:5756-5775 | MS.gene05970:CDS | 30.0% | |
| GTAAAGAGAAGATTGTTGAA+GGG | + | 57354:5783-5802 | MS.gene05970:CDS | 30.0% | |
| GTGTAAAACGAAATTGATGA+AGG | - | 57354:5191-5210 | MS.gene05970:intergenic | 30.0% | |
| TAAAGAGAAGATTGTTGAAG+GGG | + | 57354:5784-5803 | MS.gene05970:CDS | 30.0% | |
| TGATATTGGTATGAGAGTTA+AGG | + | 57354:4338-4357 | MS.gene05970:CDS | 30.0% | |
| TGCTTTAATCAACTGTACAA+AGG | - | 57354:4967-4986 | MS.gene05970:intergenic | 30.0% | |
| TGTTACCTTGATAAAGATGA+AGG | + | 57354:4606-4625 | MS.gene05970:CDS | 30.0% | |
| TTCTTCATCTTCTTCAATCA+TGG | + | 57354:3042-3061 | MS.gene05970:CDS | 30.0% | |
| TTGATAAGTCATCAACTAAG+CGG | + | 57354:5636-5655 | MS.gene05970:CDS | 30.0% | |
| ! | ACTTCCAAGAACATCTTTTA+TGG | - | 57354:5582-5601 | MS.gene05970:intergenic | 30.0% |
| ! | GATTGGTATGTATCTCTTTT+GGG | + | 57354:4258-4277 | MS.gene05970:CDS | 30.0% |
| ! | GCAGAAATAATTGATAACTC+TGG | + | 57354:4984-5003 | MS.gene05970:CDS | 30.0% |
| ! | TCATCAATTTCGTTTTACAC+AGG | + | 57354:5191-5210 | MS.gene05970:CDS | 30.0% |
| ! | TGATTGGTATGTATCTCTTT+TGG | + | 57354:4257-4276 | MS.gene05970:CDS | 30.0% |
| ! | TTCTAAAAAATGACGAGTCA+GGG | + | 57354:5258-5277 | MS.gene05970:CDS | 30.0% |
| ! | TTTGAAGATTTTTGCTAGGT+TGG | + | 57354:3759-3778 | MS.gene05970:CDS | 30.0% |
| !! | CAATTTGTTATCGTCTTCTA+GGG | + | 57354:3492-3511 | MS.gene05970:CDS | 30.0% |
| !! | TCAATTTGTTATCGTCTTCT+AGG | + | 57354:3491-3510 | MS.gene05970:CDS | 30.0% |
| !! | TTAGTTGATGACTTATCAAG+AGG | - | 57354:5635-5654 | MS.gene05970:intergenic | 30.0% |
| !!! | AGGTTTTGAAGATTTTTGCT+AGG | + | 57354:3755-3774 | MS.gene05970:CDS | 30.0% |
| AAGATCTTTACGAAGCTGAT+TGG | - | 57354:3377-3396 | MS.gene05970:intergenic | 35.0% | |
| AAGATGATTCTGTGAGAAGT+TGG | - | 57354:3117-3136 | MS.gene05970:intergenic | 35.0% | |
| AATGACAGCAATAACAACCT+TGG | - | 57354:3629-3648 | MS.gene05970:intergenic | 35.0% | |
| ATAAGTATCCTGATGCTGTT+AGG | + | 57354:3560-3579 | MS.gene05970:CDS | 35.0% | |
| ATCGTTGAAGGAAATTGAAG+CGG | - | 57354:3329-3348 | MS.gene05970:intergenic | 35.0% | |
| ATGACAGCAATAACAACCTT+GGG | - | 57354:3628-3647 | MS.gene05970:intergenic | 35.0% | |
| ATGATTCCTCATTGCCAAAA+GGG | + | 57354:4291-4310 | MS.gene05970:CDS | 35.0% | |
| GATCCTAATCTTAGGTATCT+TGG | + | 57354:3961-3980 | MS.gene05970:CDS | 35.0% | |
| GGATGCTGTGATTAAATCTT+TGG | + | 57354:4041-4060 | MS.gene05970:CDS | 35.0% | |
| GGTAAAGAGAAGATTGTTGA+AGG | + | 57354:5782-5801 | MS.gene05970:CDS | 35.0% | |
| TAAGTATCCTGATGCTGTTA+GGG | + | 57354:3561-3580 | MS.gene05970:CDS | 35.0% | |
| TCAACTTATGAACAGGATGA+GGG | + | 57354:4732-4751 | MS.gene05970:CDS | 35.0% | |
| TGAAGGTTCAACTTATGAAC+AGG | + | 57354:4725-4744 | MS.gene05970:CDS | 35.0% | |
| TGTGAGCATATTAGAAGATC+TGG | + | 57354:3826-3845 | MS.gene05970:CDS | 35.0% | |
| TTCAACTTATGAACAGGATG+AGG | + | 57354:4731-4750 | MS.gene05970:CDS | 35.0% | |
| TTCGAAAATTAGGGAGTTGT+TGG | + | 57354:3930-3949 | MS.gene05970:CDS | 35.0% | |
| TTGATCAGGATCCTAATCTT+AGG | + | 57354:3953-3972 | MS.gene05970:CDS | 35.0% | |
| TTGATTGATCCTGCATTGTT+GGG | + | 57354:4399-4418 | MS.gene05970:CDS | 35.0% | |
| TTTCTGTGAACTTAGTTCCA+AGG | + | 57354:3654-3673 | MS.gene05970:CDS | 35.0% | |
| ! | AAGGTTGTTATTGCTGTCAT+TGG | + | 57354:3628-3647 | MS.gene05970:CDS | 35.0% |
| ! | AATATAATCCATGCCGCTTA+CGG | - | 57354:5316-5335 | MS.gene05970:intergenic | 35.0% |
| ! | ATGCTAGATTACAGCTTGTT+CGG | + | 57354:4361-4380 | MS.gene05970:CDS | 35.0% |
| ! | CTTCTAAAAAATGACGAGTC+AGG | + | 57354:5257-5276 | MS.gene05970:CDS | 35.0% |
| ! | TCAATTTCGTTTTACACAGG+AGG | + | 57354:5194-5213 | MS.gene05970:CDS | 35.0% |
| ! | TCTCAATTTCTTCACCCTTT+TGG | - | 57354:4308-4327 | MS.gene05970:intergenic | 35.0% |
| ! | TCTTTAAGAGCTAATCCATC+TGG | - | 57354:5125-5144 | MS.gene05970:intergenic | 35.0% |
| ! | TTTAGAAAGTTCTGATCCCA+AGG | + | 57354:3609-3628 | MS.gene05970:CDS | 35.0% |
| !! | AGTCACTTCTTTTGAAGAAG+AGG | + | 57354:5450-5469 | MS.gene05970:CDS | 35.0% |
| !! | GATTACTTTGAGACAAACTC+GGG | - | 57354:5613-5632 | MS.gene05970:intergenic | 35.0% |
| !! | GGATTACTTTGAGACAAACT+CGG | - | 57354:5614-5633 | MS.gene05970:intergenic | 35.0% |
| !!! | AAGCTATTGCTGTTGTTTTG+AGG | + | 57354:3530-3549 | MS.gene05970:CDS | 35.0% |
| !!! | AGCTATTGCTGTTGTTTTGA+GGG | + | 57354:3531-3550 | MS.gene05970:CDS | 35.0% |
| !!! | CGTCTTCTAGGGTTTTTATT+AGG | + | 57354:3503-3522 | MS.gene05970:CDS | 35.0% |
| AAACAAACCCTAACAGCATC+AGG | - | 57354:3571-3590 | MS.gene05970:intergenic | 40.0% | |
| AAATAAAAGGCCAGAGCCAA+GGG | + | 57354:5538-5557 | MS.gene05970:CDS | 40.0% | |
| AACCACGTTTAAGGGTGAAT+TGG | - | 57354:5879-5898 | MS.gene05970:intergenic | 40.0% | |
| AAGTCATCAACTAAGCGGAA+AGG | + | 57354:5641-5660 | MS.gene05970:CDS | 40.0% | |
| AATAAAGAGAGAAGACGGAG+AGG | + | 57354:5761-5780 | MS.gene05970:CDS | 40.0% | |
| AGTCATCAACTAAGCGGAAA+GGG | + | 57354:5642-5661 | MS.gene05970:CDS | 40.0% | |
| AGTTGGCGGTTTCGAAAATT+AGG | + | 57354:3920-3939 | MS.gene05970:CDS | 40.0% | |
| ATAAACATTCCTACCACACG+TGG | - | 57354:4220-4239 | MS.gene05970:intergenic | 40.0% | |
| ATCTTCATCAGAAGATTCGG+CGG | - | 57354:4778-4797 | MS.gene05970:intergenic | 40.0% | |
| CTCTTCCTTCACAAACGAAT+TGG | + | 57354:3295-3314 | MS.gene05970:CDS | 40.0% | |
| GAAATAGTGGCAACATGTGA+AGG | + | 57354:4708-4727 | MS.gene05970:CDS | 40.0% | |
| GATGATTCCTCATTGCCAAA+AGG | + | 57354:4290-4309 | MS.gene05970:CDS | 40.0% | |
| GGATTTGATGAGATCGTCTA+GGG | - | 57354:3086-3105 | MS.gene05970:intergenic | 40.0% | |
| GGTAACCAATTCGTTTGTGA+AGG | - | 57354:3303-3322 | MS.gene05970:intergenic | 40.0% | |
| GTTGATTGATCCTGCATTGT+TGG | + | 57354:4398-4417 | MS.gene05970:CDS | 40.0% | |
| GTTGGCGGTTTCGAAAATTA+GGG | + | 57354:3921-3940 | MS.gene05970:CDS | 40.0% | |
| GTTTGGGAAACCACGTTTAA+GGG | - | 57354:5887-5906 | MS.gene05970:intergenic | 40.0% | |
| TAAACTGCTCTTATTGACGG+AGG | - | 57354:4546-4565 | MS.gene05970:intergenic | 40.0% | |
| TACACATTACCCAACAATGC+AGG | - | 57354:4411-4430 | MS.gene05970:intergenic | 40.0% | |
| TCACATGTTGCCACTATTTC+AGG | - | 57354:4708-4727 | MS.gene05970:intergenic | 40.0% | |
| TGATAACTCTGGTCAGAATG+TGG | + | 57354:4995-5014 | MS.gene05970:CDS | 40.0% | |
| TGGATTTGATGAGATCGTCT+AGG | - | 57354:3087-3106 | MS.gene05970:intergenic | 40.0% | |
| TGGGTAATGTGTACTTGCAT+AGG | + | 57354:4418-4437 | MS.gene05970:CDS | 40.0% | |
| TGTTTGGGAAACCACGTTTA+AGG | - | 57354:5888-5907 | MS.gene05970:intergenic | 40.0% | |
| TTCCTTCAACGATTCAACAC+CGG | + | 57354:3336-3355 | MS.gene05970:CDS | 40.0% | |
| TTTGCTGGGGGATAATCATT+TGG | - | 57354:5368-5387 | MS.gene05970:intergenic | 40.0% | |
| TTTGTGAAGGAAGAGAGAAG+AGG | - | 57354:3290-3309 | MS.gene05970:intergenic | 40.0% | |
| ! | AGAGCATCAATGAGTTCAAG+TGG | - | 57354:4498-4517 | MS.gene05970:intergenic | 40.0% |
| ! | CAATGTGGTGGAGATATCTA+GGG | + | 57354:4128-4147 | MS.gene05970:CDS | 40.0% |
| ! | CTACTCGAATTGGGATTTTC+AGG | - | 57354:5737-5756 | MS.gene05970:intergenic | 40.0% |
| ! | GGTGCCATAAAAGATGTTCT+TGG | + | 57354:5575-5594 | MS.gene05970:CDS | 40.0% |
| ! | TCTCAGTCTTATCTGAAGCA+AGG | - | 57354:5340-5359 | MS.gene05970:intergenic | 40.0% |
| ! | TCTGAAGTAGTGCCAAATTG+AGG | - | 57354:5221-5240 | MS.gene05970:intergenic | 40.0% |
| ! | TGCTAGATTACAGCTTGTTC+GGG | + | 57354:4362-4381 | MS.gene05970:CDS | 40.0% |
| !! | CAATTTTAACCACGTGTGGT+AGG | + | 57354:4208-4227 | MS.gene05970:CDS | 40.0% |
| !! | GAATTGGGATTTTCAGGATC+AGG | - | 57354:5731-5750 | MS.gene05970:intergenic | 40.0% |
| !! | GCCCGAGTTTTATAGGATTT+TGG | + | 57354:3702-3721 | MS.gene05970:CDS | 40.0% |
| !! | GGTTCAATTTTAACCACGTG+TGG | + | 57354:4204-4223 | MS.gene05970:CDS | 40.0% |
| !! | TTGGTGATGAGAAGAAGAAC+CGG | - | 57354:3358-3377 | MS.gene05970:intergenic | 40.0% |
| !!! | GTAGGTGAGTTTTTGAAGTG+CGG | - | 57354:3206-3225 | MS.gene05970:intergenic | 40.0% |
| !!! | TTTTTGAAGTGCGGTGGATT+TGG | - | 57354:3197-3216 | MS.gene05970:intergenic | 40.0% |
| AAAAAGAGTAGCCACCGTCA+TGG | + | 57354:5830-5849 | MS.gene05970:CDS | 45.0% | |
| AAGATACGATCTCGGATCCT+TGG | - | 57354:3674-3693 | MS.gene05970:intergenic | 45.0% | |
| AAGTGACTGCTCTGTCAACT+TGG | - | 57354:5438-5457 | MS.gene05970:intergenic | 45.0% | |
| AATCTCACCACTACAGGTCT+GGG | - | 57354:5491-5510 | MS.gene05970:intergenic | 45.0% | |
| ACAATCCTCTTCCCTAACCT+AGG | - | 57354:3796-3815 | MS.gene05970:intergenic | 45.0% | |
| AGCCAATTCACCCTTAAACG+TGG | + | 57354:5874-5893 | MS.gene05970:CDS | 45.0% | |
| AGGGGAAGAATCTGATCAGA+AGG | + | 57354:5802-5821 | MS.gene05970:CDS | 45.0% | |
| ATTCGGCGGTTGAATTCCTT+GGG | - | 57354:4764-4783 | MS.gene05970:intergenic | 45.0% | |
| CAAATAAAAGGCCAGAGCCA+AGG | + | 57354:5537-5556 | MS.gene05970:CDS | 45.0% | |
| CACTGAAGCTCCTGAAATAG+TGG | + | 57354:4695-4714 | MS.gene05970:CDS | 45.0% | |
| CAGCACCAGGTCCAAATAAA+AGG | + | 57354:5525-5544 | MS.gene05970:CDS | 45.0% | |
| CCAAGGGACAATTCTCTTTC+TGG | + | 57354:5554-5573 | MS.gene05970:CDS | 45.0% | |
| CCAGAAAGAGAATTGTCCCT+TGG | - | 57354:5557-5576 | MS.gene05970:intergenic | 45.0% | |
| CCAGTCTCAATAAGTGCACA+GGG | + | 57354:5086-5105 | MS.gene05970:CDS | 45.0% | |
| CCATGGAATCGACATGTCAT+GGG | + | 57354:3237-3256 | MS.gene05970:CDS | 45.0% | |
| CGGAAAGGGAAGAAGAAACT+AGG | + | 57354:5656-5675 | MS.gene05970:CDS | 45.0% | |
| GGAAGAGTTACTGTACCAGA+TGG | + | 57354:5107-5126 | MS.gene05970:CDS | 45.0% | |
| GGGGAAGAATCTGATCAGAA+GGG | + | 57354:5803-5822 | MS.gene05970:CDS | 45.0% | |
| GTAGTGGTGAGATTGGATGA+TGG | + | 57354:5497-5516 | MS.gene05970:CDS | 45.0% | |
| TACACAGGAGGTCCTCAATT+TGG | + | 57354:5206-5225 | MS.gene05970:CDS | 45.0% | |
| TATTGACGGAGGCAAGAGAT+TGG | - | 57354:4535-4554 | MS.gene05970:intergenic | 45.0% | |
| TCACGAGTCTGCTGTTAAGT+TGG | + | 57354:3903-3922 | MS.gene05970:CDS | 45.0% | |
| TCATCCAATCTCACCACTAC+AGG | - | 57354:5497-5516 | MS.gene05970:intergenic | 45.0% | |
| TCCAGTCTCAATAAGTGCAC+AGG | + | 57354:5085-5104 | MS.gene05970:CDS | 45.0% | |
| TCCATGGAATCGACATGTCA+TGG | + | 57354:3236-3255 | MS.gene05970:CDS | 45.0% | |
| TGAAGGAAATTGAAGCGGCA+TGG | - | 57354:3324-3343 | MS.gene05970:intergenic | 45.0% | |
| TGAGTCTTTGCGGTTGTTGA+TGG | + | 57354:4089-4108 | MS.gene05970:CDS | 45.0% | |
| TGGTTCACTGACAGCAAATC+AGG | + | 57354:4905-4924 | MS.gene05970:CDS | 45.0% | |
| TTCCCTAACCTAGGTTCCAA+AGG | - | 57354:3787-3806 | MS.gene05970:intergenic | 45.0% | |
| TTGATGCTCTTGTACAGCCT+CGG | + | 57354:4508-4527 | MS.gene05970:CDS | 45.0% | |
| ! | AACCGGTGTTGAATCGTTGA+AGG | - | 57354:3341-3360 | MS.gene05970:intergenic | 45.0% |
| ! | GATATTGTGTGCTGCTGCTT+GGG | + | 57354:4440-4459 | MS.gene05970:CDS | 45.0% |
| ! | GCAATGTGGTGGAGATATCT+AGG | + | 57354:4127-4146 | MS.gene05970:CDS | 45.0% |
| ! | TAGGGAGTTGTTGGTTGATC+AGG | + | 57354:3939-3958 | MS.gene05970:CDS | 45.0% |
| ! | TATGGTCTCTGAGAGCAATG+TGG | + | 57354:4113-4132 | MS.gene05970:CDS | 45.0% |
| ! | TCTTCACCCTTTTGGCAATG+AGG | - | 57354:4300-4319 | MS.gene05970:intergenic | 45.0% |
| !! | ACTTTGAGACAAACTCGGGT+TGG | - | 57354:5609-5628 | MS.gene05970:intergenic | 45.0% |
| !! | CTCCTTTGGAACCTAGGTTA+GGG | + | 57354:3782-3801 | MS.gene05970:CDS | 45.0% |
| !! | GGTGGATTTGGTTTGTGGAT+CGG | - | 57354:3185-3204 | MS.gene05970:intergenic | 45.0% |
| !! | TCTGGCCTTTTATTTGGACC+TGG | - | 57354:5533-5552 | MS.gene05970:intergenic | 45.0% |
| !! | TGACATGTCGATTCCATGGA+TGG | - | 57354:3236-3255 | MS.gene05970:intergenic | 45.0% |
| !! | TTGACTTGGGGTCATTTGCT+GGG | - | 57354:5382-5401 | MS.gene05970:intergenic | 45.0% |
| !! | TTTGACTTGGGGTCATTTGC+TGG | - | 57354:5383-5402 | MS.gene05970:intergenic | 45.0% |
| !! | TTTGCGGTTGTTGATGGCTA+TGG | + | 57354:4095-4114 | MS.gene05970:CDS | 45.0% |
| !! | TTTTGCTAGGTTGGCTCCTT+TGG | + | 57354:3768-3787 | MS.gene05970:CDS | 45.0% |
| !!! | CGCTTGTTTTTGAGTGTGTG+AGG | + | 57354:3857-3876 | MS.gene05970:CDS | 45.0% |
| !!! | CTTGGCTCTGGCCTTTTATT+TGG | - | 57354:5539-5558 | MS.gene05970:intergenic | 45.0% |
| !!! | GATGCTTTTTCCGTGGAACT+TGG | + | 57354:5062-5081 | MS.gene05970:CDS | 45.0% |
| AATGAAGCCCAGACCTGTAG+TGG | + | 57354:5481-5500 | MS.gene05970:CDS | 50.0% | |
| ACTCTGGTCAGAATGTGGAC+AGG | + | 57354:5000-5019 | MS.gene05970:CDS | 50.0% | |
| AGAGAATTGTCCCTTGGCTC+TGG | - | 57354:5551-5570 | MS.gene05970:intergenic | 50.0% | |
| AGCACTGCCCACAAATGCTT+CGG | - | 57354:4012-4031 | MS.gene05970:intergenic | 50.0% | |
| AGGACATTACCTCGACAACG+TGG | - | 57354:3270-3289 | MS.gene05970:intergenic | 50.0% | |
| CAATCTCACCACTACAGGTC+TGG | - | 57354:5492-5511 | MS.gene05970:intergenic | 50.0% | |
| CAGACCTGTAGTGGTGAGAT+TGG | + | 57354:5490-5509 | MS.gene05970:CDS | 50.0% | |
| CATTACCTCGACAACGTGGA+AGG | - | 57354:3266-3285 | MS.gene05970:intergenic | 50.0% | |
| CCCTGTGCACTTATTGAGAC+TGG | - | 57354:5089-5108 | MS.gene05970:intergenic | 50.0% | |
| CCTTGCTTGAACACCGTAAG+CGG | + | 57354:5300-5319 | MS.gene05970:CDS | 50.0% | |
| CTATAAAACTCGGGCGCCAA+CGG | - | 57354:3697-3716 | MS.gene05970:intergenic | 50.0% | |
| GAAGATGAAGAACCCGCCAT+TGG | - | 57354:3034-3053 | MS.gene05970:intergenic | 50.0% | |
| GATTCGGCGGTTGAATTCCT+TGG | - | 57354:4765-4784 | MS.gene05970:intergenic | 50.0% | |
| GCCAACGGAAGATACGATCT+CGG | - | 57354:3682-3701 | MS.gene05970:intergenic | 50.0% | |
| GTGGGCAGTGCTAGAGAATA+AGG | + | 57354:4020-4039 | MS.gene05970:CDS | 50.0% | |
| TCCGAGATCGTATCTTCCGT+TGG | + | 57354:3678-3697 | MS.gene05970:CDS | 50.0% | |
| TGAGACTGGACCAAGTTCCA+CGG | - | 57354:5075-5094 | MS.gene05970:intergenic | 50.0% | |
| TGGAACCTAGGTTAGGGAAG+AGG | + | 57354:3788-3807 | MS.gene05970:CDS | 50.0% | |
| TGTGAGAAGTTGGAGTCGCA+TGG | - | 57354:3107-3126 | MS.gene05970:intergenic | 50.0% | |
| ! | AGGATGAGGGCTTTAACCCA+AGG | + | 57354:4745-4764 | MS.gene05970:CDS | 50.0% |
| ! | GAGTTTTACGCCTGCCATGA+CGG | - | 57354:5847-5866 | MS.gene05970:intergenic | 50.0% |
| ! | GGATATTGTGTGCTGCTGCT+TGG | + | 57354:4439-4458 | MS.gene05970:CDS | 50.0% |
| ! | TGACTTGGGGTCATTTGCTG+GGG | - | 57354:5381-5400 | MS.gene05970:intergenic | 50.0% |
| ! | TGAGATCGTCTAGGGTTCGT+TGG | - | 57354:3078-3097 | MS.gene05970:intergenic | 50.0% |
| ! | TGCTACGCCGAAGCATTTGT+GGG | + | 57354:4002-4021 | MS.gene05970:CDS | 50.0% |
| ! | TTGCTACGCCGAAGCATTTG+TGG | + | 57354:4001-4020 | MS.gene05970:CDS | 50.0% |
| !! | AGTGCGGTGGATTTGGTTTG+TGG | - | 57354:3190-3209 | MS.gene05970:intergenic | 50.0% |
| !! | CATGTCGATTCCATGGATGG+AGG | - | 57354:3233-3252 | MS.gene05970:intergenic | 50.0% |
| !! | CCCATGACATGTCGATTCCA+TGG | - | 57354:3240-3259 | MS.gene05970:intergenic | 50.0% |
| !! | CGAGTCTGCTGTTAAGTTGG+CGG | + | 57354:3906-3925 | MS.gene05970:CDS | 50.0% |
| !! | GAAGGTACTTCATCCTCACG+TGG | + | 57354:4624-4643 | MS.gene05970:CDS | 50.0% |
| !! | GCTCCTTTGGAACCTAGGTT+AGG | + | 57354:3781-3800 | MS.gene05970:CDS | 50.0% |
| !! | GGATTTGGTTTGTGGATCGG+TGG | - | 57354:3182-3201 | MS.gene05970:intergenic | 50.0% |
| !! | GTTCCACGGAAAAAGCATCG+CGG | - | 57354:5061-5080 | MS.gene05970:intergenic | 50.0% |
| !!! | GGTGAGTTTTTGAAGTGCGG+TGG | - | 57354:3203-3222 | MS.gene05970:intergenic | 50.0% |
| ACCTACCTCTCCTCCATCCA+TGG | + | 57354:3220-3239 | MS.gene05970:CDS | 55.0% | |
| CCGCTTACGGTGTTCAAGCA+AGG | - | 57354:5303-5322 | MS.gene05970:intergenic | 55.0% | |
| CGATTCCATGGATGGAGGAG+AGG | - | 57354:3228-3247 | MS.gene05970:intergenic | 55.0% | |
| CTTGAACACCGTAAGCGGCA+TGG | + | 57354:5305-5324 | MS.gene05970:CDS | 55.0% | |
| GGTACTTCATCCTCACGTGG+TGG | + | 57354:4627-4646 | MS.gene05970:CDS | 55.0% | |
| TCCATGGATGGAGGAGAGGT+AGG | - | 57354:3224-3243 | MS.gene05970:intergenic | 55.0% | |
| ! | ATCCTCACGTGGTGGCGAAT+TGG | + | 57354:4635-4654 | MS.gene05970:CDS | 55.0% |
| ! | GACTTGGGGTCATTTGCTGG+GGG | - | 57354:5380-5399 | MS.gene05970:intergenic | 55.0% |
| ! | GGTCTCTGAGAGCAATGTGG+TGG | + | 57354:4116-4135 | MS.gene05970:CDS | 55.0% |
| ! | TTTTACGCCTGCCATGACGG+TGG | - | 57354:5844-5863 | MS.gene05970:intergenic | 55.0% |
| !! | CACGGAAAAAGCATCGCGGA+TGG | - | 57354:5057-5076 | MS.gene05970:intergenic | 55.0% |
| !! | CGTTGGCGCCCGAGTTTTAT+AGG | + | 57354:3695-3714 | MS.gene05970:CDS | 55.0% |
| !! | GATGATGGAGATGCAGCACC+AGG | + | 57354:5512-5531 | MS.gene05970:CDS | 55.0% |
| !! | GGTTGGCTCCTTTGGAACCT+AGG | + | 57354:3776-3795 | MS.gene05970:CDS | 55.0% |
| !!! | CATCCGCGATGCTTTTTCCG+TGG | + | 57354:5055-5074 | MS.gene05970:CDS | 55.0% |
| AGAGTAGCCACCGTCATGGC+AGG | + | 57354:5834-5853 | MS.gene05970:CDS | 60.0% | |
| AGCCAATTCGCCACCACGTG+AGG | - | 57354:4640-4659 | MS.gene05970:intergenic | 60.0% | |
| GGCTTCCTTCCACGTTGTCG+AGG | + | 57354:3258-3277 | MS.gene05970:CDS | 60.0% | |
| ! | CGTGGTGGCGAATTGGCTAG+CGG | + | 57354:4642-4661 | MS.gene05970:CDS | 60.0% |
| ! | GGAGGCAAGAGATTGGTCCG+AGG | - | 57354:4528-4547 | MS.gene05970:intergenic | 60.0% |
| ! | TGTGCTGCTGCTTGGGTTGC+TGG | + | 57354:4447-4466 | MS.gene05970:CDS | 60.0% |
| ATCACGCGCGAGGTCGAGAG+TGG | - | 57354:3455-3474 | MS.gene05970:intergenic | 65.0% | |
| CAGGAGTGAGATCACGCGCG+AGG | - | 57354:3465-3484 | MS.gene05970:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57354 | gene | 3034 | 5910 | 3034 | ID=MS.gene05970 |
| 57354 | mRNA | 3034 | 5910 | 3034 | ID=MS.gene05970.t1;Parent=MS.gene05970 |
| 57354 | exon | 3034 | 5910 | 3034 | ID=MS.gene05970.t1.exon1;Parent=MS.gene05970.t1 |
| 57354 | CDS | 3034 | 5910 | 3034 | ID=cds.MS.gene05970.t1;Parent=MS.gene05970.t1 |
| Gene Sequence |
| Protein sequence |
