Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039280.t1 | XP_013464447.1 | 97.1 | 350 | 10 | 0 | 77 | 426 | 72 | 421 | 4.30E-182 | 647.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039280.t1 | Q76FS5 | 74.7 | 356 | 88 | 1 | 70 | 425 | 63 | 416 | 2.5e-146 | 520.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039280.t1 | A0A072V9K7 | 97.1 | 350 | 10 | 0 | 77 | 426 | 72 | 421 | 3.1e-182 | 647.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene039280 | MS.gene041919 | PPI |
MS.gene039280 | MS.gene011755 | PPI |
MS.gene039280 | MS.gene44511 | PPI |
MS.gene039280 | MS.gene56598 | PPI |
MS.gene039280 | MS.gene039281 | PPI |
MS.gene039280 | MS.gene060981 | PPI |
MS.gene039280 | MS.gene90447 | PPI |
MS.gene039280 | MS.gene56599 | PPI |
MS.gene039280 | MS.gene95988 | PPI |
MS.gene039280 | MS.gene060982 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039280.t1 | MTR_2g072470 | 93.261 | 371 | 21 | 2 | 57 | 426 | 54 | 421 | 0.0 | 685 |
MS.gene039280.t1 | MTR_4g095055 | 40.575 | 313 | 172 | 3 | 108 | 406 | 79 | 391 | 6.47e-76 | 243 |
MS.gene039280.t1 | MTR_4g095055 | 41.014 | 217 | 114 | 3 | 108 | 310 | 79 | 295 | 3.47e-45 | 163 |
MS.gene039280.t1 | MTR_4g095055 | 39.583 | 96 | 58 | 0 | 311 | 406 | 369 | 464 | 5.51e-17 | 83.2 |
MS.gene039280.t1 | MTR_8g078070 | 35.887 | 248 | 141 | 6 | 118 | 353 | 92 | 333 | 8.09e-34 | 130 |
MS.gene039280.t1 | MTR_5g019460 | 35.827 | 254 | 145 | 6 | 118 | 359 | 91 | 338 | 1.33e-32 | 127 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039280.t1 | AT1G17050 | 74.510 | 357 | 89 | 1 | 69 | 425 | 62 | 416 | 0.0 | 549 |
MS.gene039280.t1 | AT1G78510 | 71.018 | 383 | 103 | 2 | 49 | 425 | 25 | 405 | 0.0 | 540 |
MS.gene039280.t1 | AT1G78510 | 78.443 | 334 | 72 | 0 | 92 | 425 | 33 | 366 | 0.0 | 536 |
MS.gene039280.t1 | AT2G34630 | 39.490 | 314 | 177 | 3 | 108 | 408 | 85 | 398 | 6.34e-73 | 235 |
MS.gene039280.t1 | AT2G34630 | 39.731 | 297 | 166 | 3 | 125 | 408 | 1 | 297 | 2.07e-69 | 223 |
MS.gene039280.t1 | AT4G36810 | 38.722 | 266 | 139 | 9 | 116 | 364 | 85 | 343 | 1.08e-36 | 138 |
MS.gene039280.t1 | AT2G18620 | 38.722 | 266 | 142 | 9 | 116 | 367 | 64 | 322 | 6.50e-35 | 132 |
MS.gene039280.t1 | AT2G18640 | 36.800 | 250 | 140 | 7 | 116 | 353 | 90 | 333 | 2.02e-33 | 129 |
MS.gene039280.t1 | AT3G14510 | 38.075 | 239 | 128 | 6 | 143 | 367 | 27 | 259 | 4.25e-32 | 123 |
MS.gene039280.t1 | AT3G20160 | 34.646 | 254 | 143 | 8 | 116 | 353 | 59 | 305 | 7.53e-30 | 119 |
MS.gene039280.t1 | AT3G32040 | 36.820 | 239 | 131 | 6 | 143 | 367 | 103 | 335 | 1.96e-27 | 112 |
MS.gene039280.t1 | AT2G23800 | 34.661 | 251 | 144 | 9 | 116 | 353 | 94 | 337 | 2.72e-27 | 112 |
MS.gene039280.t1 | AT3G29430 | 36.820 | 239 | 131 | 6 | 143 | 367 | 100 | 332 | 2.79e-26 | 109 |
MS.gene039280.t1 | AT3G14550 | 34.831 | 267 | 153 | 8 | 116 | 367 | 75 | 335 | 4.19e-26 | 108 |
MS.gene039280.t1 | AT3G14550 | 34.831 | 267 | 153 | 8 | 116 | 367 | 75 | 335 | 4.19e-26 | 108 |
MS.gene039280.t1 | AT3G14550 | 34.831 | 267 | 153 | 8 | 116 | 367 | 75 | 335 | 4.19e-26 | 108 |
MS.gene039280.t1 | AT3G14530 | 36.820 | 239 | 131 | 7 | 143 | 367 | 103 | 335 | 1.17e-25 | 107 |
MS.gene039280.t1 | AT3G20160 | 32.389 | 247 | 130 | 8 | 116 | 353 | 59 | 277 | 4.17e-25 | 105 |
MS.gene039280.t1 | AT1G49530 | 31.111 | 225 | 133 | 6 | 144 | 352 | 78 | 296 | 2.92e-21 | 94.7 |
Find 78 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAACCTATTTGGTGAAAT+AGG | 0.152420 | 2.2:-20274970 | None:intergenic |
TTCACTTACAGTTGTCAATT+AGG | 0.230136 | 2.2:-20273784 | None:intergenic |
ACAACCTATTTGGTGAAATA+GGG | 0.248193 | 2.2:-20274969 | None:intergenic |
ACTACTTCAAACAACCTATT+TGG | 0.252967 | 2.2:-20274979 | None:intergenic |
GAGACCGGCTCTTGTGTTCT+TGG | 0.257479 | 2.2:+20275547 | MS.gene039280:CDS |
TTCTCCAACGCGAAAATTAC+AGG | 0.258160 | 2.2:-20277032 | None:intergenic |
TTGATTGCTGCCAGCGTAAA+AGG | 0.270096 | 2.2:+20276837 | MS.gene039280:CDS |
TCACTTACAGTTGTCAATTA+GGG | 0.336771 | 2.2:-20273783 | None:intergenic |
GAAACTGTTCATCAAATGTT+TGG | 0.338601 | 2.2:+20276305 | MS.gene039280:CDS |
CCAAGTTGTCGACGACATAT+TGG | 0.347498 | 2.2:+20276938 | MS.gene039280:CDS |
CGTTCTTTCCTTCTTCTCTC+TGG | 0.367048 | 2.2:+20273591 | MS.gene039280:CDS |
CAACCCCTATTTCACCAAAT+AGG | 0.381053 | 2.2:+20274965 | MS.gene039280:CDS |
CAATTAGGGTTTGTGCTTTG+TGG | 0.381739 | 2.2:-20273769 | None:intergenic |
TCAATGATATCCCTCAATTT+CGG | 0.393056 | 2.2:-20277059 | None:intergenic |
TTTGGTGAAATAGGGGTTGC+TGG | 0.395241 | 2.2:-20274961 | None:intergenic |
ACGAAATTGATACTGAGATA+TGG | 0.401320 | 2.2:-20273726 | None:intergenic |
GCGACAGAAGGATCAGAAAA+AGG | 0.405717 | 2.2:-20273686 | None:intergenic |
CTCTTGTGTTCTTGGTGTCA+AGG | 0.413478 | 2.2:+20275555 | MS.gene039280:CDS |
AGGAGCTGTCAGGTTACCTT+TGG | 0.418601 | 2.2:-20277012 | None:intergenic |
CCAATATGTCGTCGACAACT+TGG | 0.427937 | 2.2:-20276938 | None:intergenic |
GAGTCTGAATTTAGCGAGAT+TGG | 0.432083 | 2.2:+20277080 | MS.gene039280:CDS |
ACTGAGAAAATGTTCGAATA+CGG | 0.446574 | 2.2:+20276894 | MS.gene039280:CDS |
GCAATTAAAGACCTTGCAAA+AGG | 0.452757 | 2.2:+20274919 | MS.gene039280:CDS |
TCAGCTGCAGATATTAAAAC+TGG | 0.453325 | 2.2:-20275494 | None:intergenic |
ATCAAGTTGGTTAAGAGTTG+TGG | 0.459670 | 2.2:+20277119 | MS.gene039280:CDS |
AGCTTGCTTTATTTCTCCAC+TGG | 0.468481 | 2.2:-20276745 | None:intergenic |
AGGGCGACCGCAGAGCTATA+TGG | 0.468640 | 2.2:+20275575 | MS.gene039280:CDS |
CTCTCCCTCCTCAAGCTCCA+TGG | 0.469988 | 2.2:+20273633 | MS.gene039280:CDS |
TCAAGTTGGTTAAGAGTTGT+GGG | 0.479565 | 2.2:+20277120 | MS.gene039280:CDS |
TCTTGTGTTCTTGGTGTCAA+GGG | 0.480305 | 2.2:+20275556 | MS.gene039280:CDS |
TGTTCTCGCCAGAGAGAAGA+AGG | 0.483062 | 2.2:-20273599 | None:intergenic |
TTGGCGAGGTCCGTGCATGC+AGG | 0.492317 | 2.2:-20276993 | None:intergenic |
GTTTGTGCTTTGTGGTGAGA+TGG | 0.493163 | 2.2:-20273761 | None:intergenic |
ACAAGAGTGGCAGTGCTGGC+TGG | 0.494391 | 2.2:+20276329 | MS.gene039280:CDS |
ACGCAATCGGCAGAGCAACT+TGG | 0.497280 | 2.2:+20276966 | MS.gene039280:CDS |
CGAAAATTACAGGAGCTGTC+AGG | 0.497944 | 2.2:-20277022 | None:intergenic |
TTCGAATACGGGAAGAATCT+CGG | 0.498347 | 2.2:+20276906 | MS.gene039280:CDS |
TGGAACAAGAGTGGCAGTGC+TGG | 0.503897 | 2.2:+20276325 | MS.gene039280:CDS |
TGGAGAAAGAACCGAAATTG+AGG | 0.505243 | 2.2:+20277048 | MS.gene039280:CDS |
CTGAGAAAATGTTCGAATAC+GGG | 0.508576 | 2.2:+20276895 | MS.gene039280:CDS |
CATATTGGATTTCACGCAAT+CGG | 0.510526 | 2.2:+20276953 | MS.gene039280:CDS |
TCTTTAGTGCTGGTGGGAAG+AGG | 0.511599 | 2.2:+20275522 | MS.gene039280:CDS |
TCATGTTTGCACAATCATCA+TGG | 0.521316 | 2.2:+20276357 | MS.gene039280:CDS |
GCTAAACGATACACACTTGG+AGG | 0.522408 | 2.2:-20277212 | None:intergenic |
GGATGCTCTTGATAGATTGT+AGG | 0.526067 | 2.2:+20275461 | MS.gene039280:intron |
AGTCATTAAACTTATCAGCC+AGG | 0.530858 | 2.2:+20276406 | MS.gene039280:CDS |
GGAGAAAGAACCGAAATTGA+GGG | 0.533563 | 2.2:+20277049 | MS.gene039280:CDS |
CAACCTATTTGGTGAAATAG+GGG | 0.541722 | 2.2:-20274968 | None:intergenic |
GATGAGAGTGACATGAGAAG+AGG | 0.542931 | 2.2:+20275819 | MS.gene039280:CDS |
ACTTGGAAAGCCTGCATGCA+CGG | 0.542947 | 2.2:+20276983 | MS.gene039280:CDS |
GAGGAAGTGTCGAAGATCCA+TGG | 0.546248 | 2.2:-20273650 | None:intergenic |
TCGAAGATCCATGGAGCTTG+AGG | 0.563901 | 2.2:-20273641 | None:intergenic |
GCTGAGCAGATCTTTAGTGC+TGG | 0.564731 | 2.2:+20275512 | MS.gene039280:CDS |
GACACCAAGAACACAAGAGC+CGG | 0.565484 | 2.2:-20275551 | None:intergenic |
GAGCAGATCTTTAGTGCTGG+TGG | 0.569958 | 2.2:+20275515 | MS.gene039280:CDS |
TCGTTTAGCTCTTGAGGACA+TGG | 0.571941 | 2.2:+20277226 | MS.gene039280:CDS |
AGCAGATCTTTAGTGCTGGT+GGG | 0.574274 | 2.2:+20275516 | MS.gene039280:CDS |
AGTGAACTGTGAGCGACAGA+AGG | 0.580523 | 2.2:-20273698 | None:intergenic |
TGGTGACATATAATCTTCAA+AGG | 0.582035 | 2.2:+20277246 | MS.gene039280:CDS |
AATCGAAAGAGCACAAGAGT+TGG | 0.582560 | 2.2:+20277145 | MS.gene039280:CDS |
TGGTGAGATGGAGTCAGAGA+AGG | 0.584341 | 2.2:-20273749 | None:intergenic |
GCATGCACGGACCTCGCCAA+AGG | 0.584554 | 2.2:+20276996 | MS.gene039280:CDS |
CTCAAAATGAAAATTACAAG+TGG | 0.585768 | 2.2:+20273548 | None:intergenic |
TGTGTATCGTTTAGCTCTTG+AGG | 0.586196 | 2.2:+20277220 | MS.gene039280:CDS |
AAGATCCATGGAGCTTGAGG+AGG | 0.589480 | 2.2:-20273638 | None:intergenic |
AAGTTGGTTAAGAGTTGTGG+GGG | 0.591345 | 2.2:+20277122 | MS.gene039280:CDS |
TCTTGATGAAGCGATCAAGT+TGG | 0.594343 | 2.2:+20277106 | MS.gene039280:CDS |
TATGTCGTCGACAACTTGGA+AGG | 0.598026 | 2.2:-20276934 | None:intergenic |
TCAAATGTTTGGAACAAGAG+TGG | 0.606800 | 2.2:+20276316 | MS.gene039280:CDS |
TGGTGGGAAGAGGATGAGAC+CGG | 0.611153 | 2.2:+20275532 | MS.gene039280:CDS |
CTGTCAGGTTACCTTTGGCG+AGG | 0.615618 | 2.2:-20277007 | None:intergenic |
AGATCCATGGAGCTTGAGGA+GGG | 0.618211 | 2.2:-20273637 | None:intergenic |
AGAGCTAAACGATACACACT+TGG | 0.629738 | 2.2:-20277215 | None:intergenic |
CAAGTTGGTTAAGAGTTGTG+GGG | 0.643343 | 2.2:+20277121 | MS.gene039280:CDS |
CTTCGACACTTCCTCCACAA+AGG | 0.643633 | 2.2:+20273658 | MS.gene039280:CDS |
AAAAGGAAGTGCCTTTGTGG+AGG | 0.645594 | 2.2:-20273669 | None:intergenic |
CTCAAGGCCATATAGCTCTG+CGG | 0.706545 | 2.2:-20275582 | None:intergenic |
TACGCTGGCAGCAATCAAGG+AGG | 0.714158 | 2.2:-20276832 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATGAAAAAATCATTATTT+CGG | + | chr2.2:20276619-20276638 | MS.gene039280:intron | 10.0% |
!! | ATTTAAATTGTCATTATCAA+AGG | + | chr2.2:20273995-20274014 | MS.gene039280:intron | 15.0% |
!! | TAATGTCAAAATCAAATAAA+TGG | - | chr2.2:20274326-20274345 | None:intergenic | 15.0% |
!! | TGATCAAATAAATTATAACA+TGG | - | chr2.2:20275974-20275993 | None:intergenic | 15.0% |
!! | TTTAAATTGTCATTATCAAA+GGG | + | chr2.2:20273996-20274015 | MS.gene039280:intron | 15.0% |
!! | TTTAGATGAAAATATTAAAG+AGG | + | chr2.2:20274148-20274167 | MS.gene039280:intron | 15.0% |
!!! | TATTGAAAGTATAGAAAATT+CGG | - | chr2.2:20274204-20274223 | None:intergenic | 15.0% |
!!! | TTTCTTTTTCAAATTAGTAT+TGG | + | chr2.2:20274757-20274776 | MS.gene039280:intron | 15.0% |
!!! | TTTTAAAAGTTGTATAATGA+TGG | - | chr2.2:20276438-20276457 | None:intergenic | 15.0% |
!!! | TTTTATTATTGCAAAACTTT+TGG | + | chr2.2:20276696-20276715 | MS.gene039280:intron | 15.0% |
!! | AAGTAATTGATATCCATTTA+AGG | - | chr2.2:20276556-20276575 | None:intergenic | 20.0% |
!! | AATATCTGACAATTCTATTA+CGG | - | chr2.2:20274695-20274714 | None:intergenic | 20.0% |
!! | AGTAATTGATATCCATTTAA+GGG | - | chr2.2:20276555-20276574 | None:intergenic | 20.0% |
!! | ATTTCTAAATAAGTATCACT+AGG | - | chr2.2:20275848-20275867 | None:intergenic | 20.0% |
!! | GTGATGTCAAAAATATTAAA+CGG | - | chr2.2:20275873-20275892 | None:intergenic | 20.0% |
!! | TAAAAACAATGTTTAGAAAC+TGG | - | chr2.2:20276681-20276700 | None:intergenic | 20.0% |
!! | TAGAAAGAAATCATTAACAT+GGG | + | chr2.2:20274171-20274190 | MS.gene039280:intron | 20.0% |
!! | TCAAAATCAAATAAATGGAA+AGG | - | chr2.2:20274321-20274340 | None:intergenic | 20.0% |
!! | TCATAAAACAGTTTGAAAAT+CGG | - | chr2.2:20274024-20274043 | None:intergenic | 20.0% |
!!! | CAAAAGTCAATTTTGAATTA+GGG | - | chr2.2:20273912-20273931 | None:intergenic | 20.0% |
!!! | GTCATATAAATAGAATTTTC+AGG | - | chr2.2:20275675-20275694 | None:intergenic | 20.0% |
!!! | GTTGAATTTGGTTTTTTATT+TGG | + | chr2.2:20273864-20273883 | MS.gene039280:intron | 20.0% |
!!! | TAACTTGCTTTCAAATAATA+GGG | + | chr2.2:20276279-20276298 | MS.gene039280:intron | 20.0% |
!!! | TTTCAAACTGTTTTATGAAA+TGG | + | chr2.2:20274026-20274045 | MS.gene039280:intron | 20.0% |
!!! | TTTGACATCACTTTATTTTT+CGG | + | chr2.2:20275882-20275901 | MS.gene039280:intron | 20.0% |
! | AATGGATATCAATTACTTCA+AGG | + | chr2.2:20276558-20276577 | MS.gene039280:intron | 25.0% |
! | AATTGAATGTTACATGTGTT+TGG | - | chr2.2:20274726-20274745 | None:intergenic | 25.0% |
! | ACTTGAAAATTGAAAAACCA+CGG | + | chr2.2:20274516-20274535 | MS.gene039280:intron | 25.0% |
! | AGTGAAAATATGAAATCAGT+AGG | - | chr2.2:20273813-20273832 | None:intergenic | 25.0% |
! | ATGGATATCAATTACTTCAA+GGG | + | chr2.2:20276559-20276578 | MS.gene039280:intron | 25.0% |
! | CATCAGTTAAACTAACATAT+AGG | - | chr2.2:20275440-20275459 | None:intergenic | 25.0% |
! | GATGATTTAAGTGGAAAAAA+TGG | + | chr2.2:20274109-20274128 | MS.gene039280:intron | 25.0% |
! | GTAATTGATATCCATTTAAG+GGG | - | chr2.2:20276554-20276573 | None:intergenic | 25.0% |
! | GTAGAAAGAAATCATTAACA+TGG | + | chr2.2:20274170-20274189 | MS.gene039280:intron | 25.0% |
! | TGGTATATACTTTCATAGAA+AGG | + | chr2.2:20276157-20276176 | MS.gene039280:intron | 25.0% |
! | TTGATGGAAAAGAAAAAACA+AGG | - | chr2.2:20276214-20276233 | None:intergenic | 25.0% |
!! | ATATGTTAGTTTAACTGATG+AGG | + | chr2.2:20275440-20275459 | MS.gene039280:intron | 25.0% |
!! | ATTGTTCAGTGATTTTAAAC+AGG | + | chr2.2:20275155-20275174 | MS.gene039280:intron | 25.0% |
!! | CCAAAAGTCAATTTTGAATT+AGG | - | chr2.2:20273913-20273932 | None:intergenic | 25.0% |
!! | TAATGACTTCAATGTTTTCA+AGG | - | chr2.2:20276394-20276413 | None:intergenic | 25.0% |
!! | TCAATTTTGAATTAGGGTTA+TGG | - | chr2.2:20273906-20273925 | None:intergenic | 25.0% |
!! | TTTTCCACTTAAATCATCTT+TGG | - | chr2.2:20274107-20274126 | None:intergenic | 25.0% |
!!! | AAACAATCGATTCATTTTAC+AGG | + | chr2.2:20274390-20274409 | MS.gene039280:intron | 25.0% |
!!! | AATTTTGGCATTGAAAGATT+TGG | + | chr2.2:20274875-20274894 | MS.gene039280:intron | 25.0% |
!!! | ATTCAAAATTGACTTTTGGA+AGG | + | chr2.2:20273914-20273933 | MS.gene039280:intron | 25.0% |
!!! | ATTTGGTTTGGTTTTTGAAT+AGG | + | chr2.2:20274892-20274911 | MS.gene039280:intron | 25.0% |
!!! | CCATTTTTCTCAAACTTTAT+GGG | + | chr2.2:20275924-20275943 | MS.gene039280:intron | 25.0% |
!!! | CCTAATTCAAAATTGACTTT+TGG | + | chr2.2:20273910-20273929 | MS.gene039280:intron | 25.0% |
!!! | CTAACTTGCTTTCAAATAAT+AGG | + | chr2.2:20276278-20276297 | MS.gene039280:intron | 25.0% |
!!! | TGATTTTAGAAGTGGAATTT+TGG | + | chr2.2:20274860-20274879 | MS.gene039280:intron | 25.0% |
!!! | TTCAAAATTGACTTTTGGAA+GGG | + | chr2.2:20273915-20273934 | MS.gene039280:intron | 25.0% |
!!! | TTTCAATTTTCAAGTGTGTT+TGG | - | chr2.2:20274511-20274530 | None:intergenic | 25.0% |
!!! | TTTTCAAATTAGTATTGGTC+TGG | + | chr2.2:20274762-20274781 | MS.gene039280:intron | 25.0% |
AATATGAAAGAACGTATGCT+AGG | + | chr2.2:20276519-20276538 | MS.gene039280:intron | 30.0% | |
ACAATTCTATTACGGTTCAA+AGG | - | chr2.2:20274687-20274706 | None:intergenic | 30.0% | |
ACGAAATTGATACTGAGATA+TGG | - | chr2.2:20273729-20273748 | None:intergenic | 30.0% | |
ACTACTTCAAACAACCTATT+TGG | - | chr2.2:20274982-20275001 | None:intergenic | 30.0% | |
ACTGAGAAAATGTTCGAATA+CGG | + | chr2.2:20276894-20276913 | MS.gene039280:CDS | 30.0% | |
AGTTTGAGAAAAATGGCTTT+AGG | - | chr2.2:20275920-20275939 | None:intergenic | 30.0% | |
ATACGTTCTTTCATATTCAC+CGG | - | chr2.2:20276516-20276535 | None:intergenic | 30.0% | |
ATCAATTACTTCAAGGGATT+GGG | + | chr2.2:20276565-20276584 | MS.gene039280:intron | 30.0% | |
ATCTTGAAATGAATGATTGC+AGG | + | chr2.2:20275715-20275734 | MS.gene039280:intron | 30.0% | |
ATTTCCTTTACACATGCATA+TGG | + | chr2.2:20275997-20276016 | MS.gene039280:intron | 30.0% | |
CCCATAAAGTTTGAGAAAAA+TGG | - | chr2.2:20275927-20275946 | None:intergenic | 30.0% | |
CTGAAGGATTATTGACAAAT+TGG | + | chr2.2:20276137-20276156 | MS.gene039280:intron | 30.0% | |
GAAACTGTTCATCAAATGTT+TGG | + | chr2.2:20276305-20276324 | MS.gene039280:CDS | 30.0% | |
GTATCCAAAGATGATTTAAG+TGG | + | chr2.2:20274100-20274119 | MS.gene039280:intron | 30.0% | |
TATCAATTACTTCAAGGGAT+TGG | + | chr2.2:20276564-20276583 | MS.gene039280:intron | 30.0% | |
TCAATGATATCCCTCAATTT+CGG | - | chr2.2:20277062-20277081 | None:intergenic | 30.0% | |
TCACTTACAGTTGTCAATTA+GGG | - | chr2.2:20273786-20273805 | None:intergenic | 30.0% | |
TCTTGAAATGAATGATTGCA+GGG | + | chr2.2:20275716-20275735 | MS.gene039280:intron | 30.0% | |
TGGTGACATATAATCTTCAA+AGG | + | chr2.2:20277246-20277265 | MS.gene039280:CDS | 30.0% | |
TGTGCGATGTAATTCATAAA+CGG | - | chr2.2:20274615-20274634 | None:intergenic | 30.0% | |
TTAGGGTTATGGAAAATTGA+AGG | - | chr2.2:20273895-20273914 | None:intergenic | 30.0% | |
TTATGAATTACATCGCACAA+TGG | + | chr2.2:20274616-20274635 | MS.gene039280:intron | 30.0% | |
TTCACTTACAGTTGTCAATT+AGG | - | chr2.2:20273787-20273806 | None:intergenic | 30.0% | |
TTGCTTTCAAATAATAGGGA+AGG | + | chr2.2:20276283-20276302 | MS.gene039280:intron | 30.0% | |
TTTCAAATTCTGCTATGCTA+TGG | + | chr2.2:20275308-20275327 | MS.gene039280:intron | 30.0% | |
TTTGTCAATAATCCTTCAGA+AGG | - | chr2.2:20276136-20276155 | None:intergenic | 30.0% | |
! | AACAACCTATTTGGTGAAAT+AGG | - | chr2.2:20274973-20274992 | None:intergenic | 30.0% |
! | ACAACCTATTTGGTGAAATA+GGG | - | chr2.2:20274972-20274991 | None:intergenic | 30.0% |
! | TATGAAATGGTTTTCTGTTC+TGG | + | chr2.2:20274039-20274058 | MS.gene039280:intron | 30.0% |
!! | ATCTTGTTTGGTGTTGAATT+TGG | + | chr2.2:20273852-20273871 | MS.gene039280:intron | 30.0% |
!!! | GCCATTTTTCTCAAACTTTA+TGG | + | chr2.2:20275923-20275942 | MS.gene039280:intron | 30.0% |
!!! | GTTCGTATTGATTTTAGAAG+TGG | + | chr2.2:20274852-20274871 | MS.gene039280:intron | 30.0% |
AACGTTACACAAAAACTGAG+TGG | - | chr2.2:20273575-20273594 | None:intergenic | 35.0% | |
ACAACATCGAGTTAGAATAG+AGG | - | chr2.2:20276256-20276275 | None:intergenic | 35.0% | |
ACGTTACACAAAAACTGAGT+GGG | - | chr2.2:20273574-20273593 | None:intergenic | 35.0% | |
AGAAAAGCTGAAAAGCAAGA+AGG | - | chr2.2:20275383-20275402 | None:intergenic | 35.0% | |
AGTCATTAAACTTATCAGCC+AGG | + | chr2.2:20276406-20276425 | MS.gene039280:CDS | 35.0% | |
ATACATAGCAGATGTAGCTT+TGG | - | chr2.2:20276111-20276130 | None:intergenic | 35.0% | |
CAACATCGAGTTAGAATAGA+GGG | - | chr2.2:20276255-20276274 | None:intergenic | 35.0% | |
CATATTGGATTTCACGCAAT+CGG | + | chr2.2:20276953-20276972 | MS.gene039280:CDS | 35.0% | |
CTGAGAAAATGTTCGAATAC+GGG | + | chr2.2:20276895-20276914 | MS.gene039280:CDS | 35.0% | |
GAGATCTGTATACTTACTCA+AGG | - | chr2.2:20275601-20275620 | None:intergenic | 35.0% | |
GAGCCAGACAAAAAATAATG+GGG | - | chr2.2:20274435-20274454 | None:intergenic | 35.0% | |
GCAATTAAAGACCTTGCAAA+AGG | + | chr2.2:20274919-20274938 | MS.gene039280:CDS | 35.0% | |
GGAAATCAAATGTCACAGTT+TGG | - | chr2.2:20276193-20276212 | None:intergenic | 35.0% | |
GGAGCCAGACAAAAAATAAT+GGG | - | chr2.2:20274436-20274455 | None:intergenic | 35.0% | |
GTTTATACTTCTTCACATGC+TGG | + | chr2.2:20274061-20274080 | MS.gene039280:intron | 35.0% | |
TATACTCAAACAGACAAGAC+AGG | - | chr2.2:20275116-20275135 | None:intergenic | 35.0% | |
TCAACACCAAACAAGATAGT+AGG | - | chr2.2:20273849-20273868 | None:intergenic | 35.0% | |
TCAGCTGCAGATATTAAAAC+TGG | - | chr2.2:20275497-20275516 | None:intergenic | 35.0% | |
TCATGTTTGCACAATCATCA+TGG | + | chr2.2:20276357-20276376 | MS.gene039280:CDS | 35.0% | |
TCGAATCCTACTATCTTGTT+TGG | + | chr2.2:20273840-20273859 | MS.gene039280:intron | 35.0% | |
! | CAACCTATTTGGTGAAATAG+GGG | - | chr2.2:20274971-20274990 | None:intergenic | 35.0% |
! | GTATAATGATGGAACTTACC+TGG | - | chr2.2:20276427-20276446 | None:intergenic | 35.0% |
! | GTGATTAAAGATTTTGCCAG+TGG | + | chr2.2:20276729-20276748 | MS.gene039280:CDS | 35.0% |
! | TACCTGCTATTTGACAATAC+TGG | + | chr2.2:20275336-20275355 | MS.gene039280:intron | 35.0% |
! | TCAAATGTTTGGAACAAGAG+TGG | + | chr2.2:20276316-20276335 | MS.gene039280:CDS | 35.0% |
! | TCAAGTTCAATCCTTTTGCA+AGG | - | chr2.2:20274933-20274952 | None:intergenic | 35.0% |
! | TGGCATTGAAAGATTTGGTT+TGG | + | chr2.2:20274880-20274899 | MS.gene039280:intron | 35.0% |
!! | ATCAAGTTGGTTAAGAGTTG+TGG | + | chr2.2:20277119-20277138 | MS.gene039280:CDS | 35.0% |
!! | CAATCGATTCATTTTACAGG+AGG | + | chr2.2:20274393-20274412 | MS.gene039280:intron | 35.0% |
!! | GACTTCAATGTTTTCAAGGT+TGG | - | chr2.2:20276390-20276409 | None:intergenic | 35.0% |
!! | TCAAGTTGGTTAAGAGTTGT+GGG | + | chr2.2:20277120-20277139 | MS.gene039280:CDS | 35.0% |
!!! | GGGCGTTTTGATTTTAATCT+TGG | + | chr2.2:20275944-20275963 | MS.gene039280:intron | 35.0% |
!!! | TGGTTTGGTTTTTGAATAGG+TGG | + | chr2.2:20274895-20274914 | MS.gene039280:intron | 35.0% |
ACTATAGCGCTATAGTGTAG+CGG | - | chr2.2:20275224-20275243 | None:intergenic | 40.0% | |
AGAGCTAAACGATACACACT+TGG | - | chr2.2:20277218-20277237 | None:intergenic | 40.0% | |
ATCATTCCAAGATTCAACCC+TGG | + | chr2.2:20276490-20276509 | MS.gene039280:intron | 40.0% | |
CAACCCCTATTTCACCAAAT+AGG | + | chr2.2:20274965-20274984 | MS.gene039280:CDS | 40.0% | |
CAATTAGGGTTTGTGCTTTG+TGG | - | chr2.2:20273772-20273791 | None:intergenic | 40.0% | |
CAGACCATATGCATGTGTAA+AGG | - | chr2.2:20276004-20276023 | None:intergenic | 40.0% | |
CGGAGCCAGACAAAAAATAA+TGG | - | chr2.2:20274437-20274456 | None:intergenic | 40.0% | |
GAAAGAACGTATGCTAGGAT+AGG | + | chr2.2:20276524-20276543 | MS.gene039280:intron | 40.0% | |
GACCAGTATTGTCAAATAGC+AGG | - | chr2.2:20275341-20275360 | None:intergenic | 40.0% | |
GAGTCTGAATTTAGCGAGAT+TGG | + | chr2.2:20277080-20277099 | MS.gene039280:CDS | 40.0% | |
GGAGAAAGAACCGAAATTGA+GGG | + | chr2.2:20277049-20277068 | MS.gene039280:CDS | 40.0% | |
GGATGCTCTTGATAGATTGT+AGG | + | chr2.2:20275461-20275480 | MS.gene039280:intron | 40.0% | |
TCTTGATGAAGCGATCAAGT+TGG | + | chr2.2:20277106-20277125 | MS.gene039280:CDS | 40.0% | |
TGCTATGTATCACCTTCTGA+AGG | + | chr2.2:20276121-20276140 | MS.gene039280:intron | 40.0% | |
TGGAGAAAGAACCGAAATTG+AGG | + | chr2.2:20277048-20277067 | MS.gene039280:CDS | 40.0% | |
TTCGAATACGGGAAGAATCT+CGG | + | chr2.2:20276906-20276925 | MS.gene039280:CDS | 40.0% | |
TTCTCCAACGCGAAAATTAC+AGG | - | chr2.2:20277035-20277054 | None:intergenic | 40.0% | |
! | AAGTTGGTTAAGAGTTGTGG+GGG | + | chr2.2:20277122-20277141 | MS.gene039280:CDS | 40.0% |
! | AATCGAAAGAGCACAAGAGT+TGG | + | chr2.2:20277145-20277164 | MS.gene039280:CDS | 40.0% |
! | AGTGTAGCGGAATTCAAAAG+CGG | - | chr2.2:20275211-20275230 | None:intergenic | 40.0% |
! | CCAGACAAAAAATAATGGGG+TGG | - | chr2.2:20274432-20274451 | None:intergenic | 40.0% |
! | TTCTTTTCCATCAACTCTGC+TGG | + | chr2.2:20276220-20276239 | MS.gene039280:intron | 40.0% |
!! | AGAAAAAGGAAGTGCCTTTG+TGG | - | chr2.2:20273675-20273694 | None:intergenic | 40.0% |
!! | AGCTTGCTTTATTTCTCCAC+TGG | - | chr2.2:20276748-20276767 | None:intergenic | 40.0% |
!! | CAAAACTTTTGGTGTGTGAC+AGG | + | chr2.2:20276707-20276726 | MS.gene039280:intron | 40.0% |
!! | CAAGTTGGTTAAGAGTTGTG+GGG | + | chr2.2:20277121-20277140 | MS.gene039280:CDS | 40.0% |
!! | TCTTGTGTTCTTGGTGTCAA+GGG | + | chr2.2:20275556-20275575 | MS.gene039280:CDS | 40.0% |
!! | TGTGTATCGTTTAGCTCTTG+AGG | + | chr2.2:20277220-20277239 | MS.gene039280:CDS | 40.0% |
!!! | CCACCCCATTATTTTTTGTC+TGG | + | chr2.2:20274429-20274448 | MS.gene039280:intron | 40.0% |
!!! | GTGTGCTGTTTTCTACTATC+TGG | + | chr2.2:20275069-20275088 | MS.gene039280:intron | 40.0% |
ACTGAAACCAGCAGAGTTGA+TGG | - | chr2.2:20276230-20276249 | None:intergenic | 45.0% | |
AGCCTTGCAAACGTGATTCT+AGG | - | chr2.2:20274466-20274485 | None:intergenic | 45.0% | |
CCAAGTTGTCGACGACATAT+TGG | + | chr2.2:20276938-20276957 | MS.gene039280:CDS | 45.0% | |
CCAATATGTCGTCGACAACT+TGG | - | chr2.2:20276941-20276960 | None:intergenic | 45.0% | |
CGAAAATTACAGGAGCTGTC+AGG | - | chr2.2:20277025-20277044 | None:intergenic | 45.0% | |
CGTTCTTTCCTTCTTCTCTC+TGG | + | chr2.2:20273591-20273610 | MS.gene039280:CDS | 45.0% | |
GATGAGAGTGACATGAGAAG+AGG | + | chr2.2:20275819-20275838 | MS.gene039280:CDS | 45.0% | |
GCGACAGAAGGATCAGAAAA+AGG | - | chr2.2:20273689-20273708 | None:intergenic | 45.0% | |
GCTAAACGATACACACTTGG+AGG | - | chr2.2:20277215-20277234 | None:intergenic | 45.0% | |
GGATAGGTCAACCCCTTAAA+TGG | + | chr2.2:20276540-20276559 | MS.gene039280:intron | 45.0% | |
GTGTATGCAAGCGTGTAACA+TGG | - | chr2.2:20275631-20275650 | None:intergenic | 45.0% | |
GTTTGTGCTTTGTGGTGAGA+TGG | - | chr2.2:20273764-20273783 | None:intergenic | 45.0% | |
TATGTCGTCGACAACTTGGA+AGG | - | chr2.2:20276937-20276956 | None:intergenic | 45.0% | |
TCTTTCATATTCACCGGCCA+GGG | - | chr2.2:20276510-20276529 | None:intergenic | 45.0% | |
TGCCTAGAATCACGTTTGCA+AGG | + | chr2.2:20274461-20274480 | MS.gene039280:intron | 45.0% | |
TTCTTTCATATTCACCGGCC+AGG | - | chr2.2:20276511-20276530 | None:intergenic | 45.0% | |
TTGATTGCTGCCAGCGTAAA+AGG | + | chr2.2:20276837-20276856 | MS.gene039280:CDS | 45.0% | |
TTGTCAAATAGCCGCTGTTG+CGG | - | chr2.2:20275248-20275267 | None:intergenic | 45.0% | |
TTTGGTGAAATAGGGGTTGC+TGG | - | chr2.2:20274964-20274983 | None:intergenic | 45.0% | |
! | AAAGGAGCTGCAGTTTTCAG+CGG | + | chr2.2:20276855-20276874 | MS.gene039280:CDS | 45.0% |
! | AGCTCCTGTAATTTTCGCGT+TGG | + | chr2.2:20277028-20277047 | MS.gene039280:CDS | 45.0% |
! | GACATGTAAGTGTGTCACTG+CGG | + | chr2.2:20274784-20274803 | MS.gene039280:intron | 45.0% |
! | TTGCAAGGCTGAATCGCTTT+TGG | + | chr2.2:20274476-20274495 | MS.gene039280:intron | 45.0% |
! | TTTTACGCTGGCAGCAATCA+AGG | - | chr2.2:20276838-20276857 | None:intergenic | 45.0% |
!! | AAAAGGAAGTGCCTTTGTGG+AGG | - | chr2.2:20273672-20273691 | None:intergenic | 45.0% |
!! | AGCAGATCTTTAGTGCTGGT+GGG | + | chr2.2:20275516-20275535 | MS.gene039280:CDS | 45.0% |
!! | CTCTTGTGTTCTTGGTGTCA+AGG | + | chr2.2:20275555-20275574 | MS.gene039280:CDS | 45.0% |
!! | TCGTTTAGCTCTTGAGGACA+TGG | + | chr2.2:20277226-20277245 | MS.gene039280:CDS | 45.0% |
AACGTGATTCTAGGCAGTGG+CGG | - | chr2.2:20274457-20274476 | None:intergenic | 50.0% | |
AAGATCCATGGAGCTTGAGG+AGG | - | chr2.2:20273641-20273660 | None:intergenic | 50.0% | |
ACTTGGAAAGCCTGCATGCA+CGG | + | chr2.2:20276983-20277002 | MS.gene039280:CDS | 50.0% | |
AGATCCATGGAGCTTGAGGA+GGG | - | chr2.2:20273640-20273659 | None:intergenic | 50.0% | |
AGGAGCTGTCAGGTTACCTT+TGG | - | chr2.2:20277015-20277034 | None:intergenic | 50.0% | |
AGTGAACTGTGAGCGACAGA+AGG | - | chr2.2:20273701-20273720 | None:intergenic | 50.0% | |
CTTCGACACTTCCTCCACAA+AGG | + | chr2.2:20273658-20273677 | MS.gene039280:CDS | 50.0% | |
GAAAAGCAAGAAGGCTCAGC+AGG | - | chr2.2:20275374-20275393 | None:intergenic | 50.0% | |
GACACCAAGAACACAAGAGC+CGG | - | chr2.2:20275554-20275573 | None:intergenic | 50.0% | |
GCAAACGTGATTCTAGGCAG+TGG | - | chr2.2:20274460-20274479 | None:intergenic | 50.0% | |
GCTGAGCAGATCTTTAGTGC+TGG | + | chr2.2:20275512-20275531 | MS.gene039280:CDS | 50.0% | |
TCGAAGATCCATGGAGCTTG+AGG | - | chr2.2:20273644-20273663 | None:intergenic | 50.0% | |
TGGTGAGATGGAGTCAGAGA+AGG | - | chr2.2:20273752-20273771 | None:intergenic | 50.0% | |
TGTTCTCGCCAGAGAGAAGA+AGG | - | chr2.2:20273602-20273621 | None:intergenic | 50.0% | |
TTACAGGAGGAAAGCCGTTG+CGG | + | chr2.2:20274406-20274425 | MS.gene039280:intron | 50.0% | |
TTCCAAGATTCAACCCTGGC+CGG | + | chr2.2:20276494-20276513 | MS.gene039280:intron | 50.0% | |
! | AAATAATGGGGTGGCCGCAA+CGG | - | chr2.2:20274423-20274442 | None:intergenic | 50.0% |
! | AACTGCAGCTCCTTTTACGC+TGG | - | chr2.2:20276850-20276869 | None:intergenic | 50.0% |
! | CTCAAGGCCATATAGCTCTG+CGG | - | chr2.2:20275585-20275604 | None:intergenic | 50.0% |
! | CTGAAGTAGAGCTTTTGCCG+TGG | - | chr2.2:20274536-20274555 | None:intergenic | 50.0% |
! | GAGCAGATCTTTAGTGCTGG+TGG | + | chr2.2:20275515-20275534 | MS.gene039280:CDS | 50.0% |
!! | GAGGAAGTGTCGAAGATCCA+TGG | - | chr2.2:20273653-20273672 | None:intergenic | 50.0% |
!! | TCTTTAGTGCTGGTGGGAAG+AGG | + | chr2.2:20275522-20275541 | MS.gene039280:CDS | 50.0% |
ACGCAATCGGCAGAGCAACT+TGG | + | chr2.2:20276966-20276985 | MS.gene039280:CDS | 55.0% | |
ACTTGCGCGCAGGGTTACTT+TGG | + | chr2.2:20276594-20276613 | MS.gene039280:intron | 55.0% | |
AGTAACCCTGCGCGCAAGTA+TGG | - | chr2.2:20276593-20276612 | None:intergenic | 55.0% | |
CTGTCAGGTTACCTTTGGCG+AGG | - | chr2.2:20277010-20277029 | None:intergenic | 55.0% | |
GCGCTATAGTACCGCAACAG+CGG | + | chr2.2:20275234-20275253 | MS.gene039280:intron | 55.0% | |
TACGCTGGCAGCAATCAAGG+AGG | - | chr2.2:20276835-20276854 | None:intergenic | 55.0% | |
TGGAACAAGAGTGGCAGTGC+TGG | + | chr2.2:20276325-20276344 | MS.gene039280:CDS | 55.0% | |
TGGTGGGAAGAGGATGAGAC+CGG | + | chr2.2:20275532-20275551 | MS.gene039280:CDS | 55.0% | |
! | GAGACCGGCTCTTGTGTTCT+TGG | + | chr2.2:20275547-20275566 | MS.gene039280:CDS | 55.0% |
AGGGCGACCGCAGAGCTATA+TGG | + | chr2.2:20275575-20275594 | MS.gene039280:CDS | 60.0% | |
CACCGGCCAGGGTTGAATCT+TGG | - | chr2.2:20276499-20276518 | None:intergenic | 60.0% | |
CTCTCCCTCCTCAAGCTCCA+TGG | + | chr2.2:20273633-20273652 | MS.gene039280:CDS | 60.0% | |
!! | ACAAGAGTGGCAGTGCTGGC+TGG | + | chr2.2:20276329-20276348 | MS.gene039280:CDS | 60.0% |
GCATGCACGGACCTCGCCAA+AGG | + | chr2.2:20276996-20277015 | MS.gene039280:CDS | 65.0% | |
GGGCTCCATACTTGCGCGCA+GGG | + | chr2.2:20276585-20276604 | MS.gene039280:intron | 65.0% | |
TGGGCTCCATACTTGCGCGC+AGG | + | chr2.2:20276584-20276603 | MS.gene039280:intron | 65.0% | |
TTGGCGAGGTCCGTGCATGC+AGG | - | chr2.2:20276996-20277015 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 20273554 | 20277277 | 20273554 | ID=MS.gene039280 |
chr2.2 | mRNA | 20273554 | 20277277 | 20273554 | ID=MS.gene039280.t1;Parent=MS.gene039280 |
chr2.2 | exon | 20273554 | 20273797 | 20273554 | ID=MS.gene039280.t1.exon1;Parent=MS.gene039280.t1 |
chr2.2 | CDS | 20273554 | 20273797 | 20273554 | ID=cds.MS.gene039280.t1;Parent=MS.gene039280.t1 |
chr2.2 | exon | 20274914 | 20275041 | 20274914 | ID=MS.gene039280.t1.exon2;Parent=MS.gene039280.t1 |
chr2.2 | CDS | 20274914 | 20275041 | 20274914 | ID=cds.MS.gene039280.t1;Parent=MS.gene039280.t1 |
chr2.2 | exon | 20275476 | 20275603 | 20275476 | ID=MS.gene039280.t1.exon3;Parent=MS.gene039280.t1 |
chr2.2 | CDS | 20275476 | 20275603 | 20275476 | ID=cds.MS.gene039280.t1;Parent=MS.gene039280.t1 |
chr2.2 | exon | 20275737 | 20275840 | 20275737 | ID=MS.gene039280.t1.exon4;Parent=MS.gene039280.t1 |
chr2.2 | CDS | 20275737 | 20275840 | 20275737 | ID=cds.MS.gene039280.t1;Parent=MS.gene039280.t1 |
chr2.2 | exon | 20276300 | 20276427 | 20276300 | ID=MS.gene039280.t1.exon5;Parent=MS.gene039280.t1 |
chr2.2 | CDS | 20276300 | 20276427 | 20276300 | ID=cds.MS.gene039280.t1;Parent=MS.gene039280.t1 |
chr2.2 | exon | 20276729 | 20277277 | 20276729 | ID=MS.gene039280.t1.exon6;Parent=MS.gene039280.t1 |
chr2.2 | CDS | 20276729 | 20277277 | 20276729 | ID=cds.MS.gene039280.t1;Parent=MS.gene039280.t1 |
Gene Sequence |
Protein sequence |