Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95988.t1 | XP_013464447.1 | 98.3 | 421 | 5 | 1 | 1 | 419 | 1 | 421 | 1.60E-226 | 795 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95988.t1 | Q76FS5 | 66.4 | 417 | 139 | 1 | 2 | 418 | 1 | 416 | 1.3e-147 | 524.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95988.t1 | A0A072V9K7 | 98.3 | 421 | 5 | 1 | 1 | 419 | 1 | 421 | 1.2e-226 | 795.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene95988 | 0.810669 | 1.03E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene95988 | 0.823064 | 1.69E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene95988 | 0.810783 | 9.71E-51 | -1.69E-46 |
| MS.gene051874 | MS.gene95988 | 0.805683 | 1.19E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene95988 | 0.801084 | 1.06E-48 | -1.69E-46 |
| MS.gene053632 | MS.gene95988 | 0.826204 | 3.08E-54 | -1.69E-46 |
| MS.gene053912 | MS.gene95988 | 0.8144 | 1.57E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene95988 | 0.857348 | 1.74E-62 | -1.69E-46 |
| MS.gene05505 | MS.gene95988 | 0.805315 | 1.42E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene95988 | 0.810305 | 1.23E-50 | -1.69E-46 |
| MS.gene056719 | MS.gene95988 | 0.811383 | 7.20E-51 | -1.69E-46 |
| MS.gene056903 | MS.gene95988 | 0.802274 | 6.06E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene95988 | 0.819723 | 1.00E-52 | -1.69E-46 |
| MS.gene058120 | MS.gene95988 | 0.80438 | 2.22E-49 | -1.69E-46 |
| MS.gene058748 | MS.gene95988 | 0.802284 | 6.03E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene95988 | 0.802776 | 4.78E-49 | -1.69E-46 |
| MS.gene060981 | MS.gene95988 | 0.810956 | 8.91E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene95988 | 0.806047 | 9.94E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95988 | MS.gene56599 | PPI |
| MS.gene95988 | MS.gene041919 | PPI |
| MS.gene56598 | MS.gene95988 | PPI |
| MS.gene95988 | MS.gene039281 | PPI |
| MS.gene060982 | MS.gene95988 | PPI |
| MS.gene95988 | MS.gene44511 | PPI |
| MS.gene011755 | MS.gene95988 | PPI |
| MS.gene039280 | MS.gene95988 | PPI |
| MS.gene95988 | MS.gene90447 | PPI |
| MS.gene060981 | MS.gene95988 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95988.t1 | MTR_2g072470 | 98.337 | 421 | 5 | 1 | 1 | 419 | 1 | 421 | 0.0 | 845 |
| MS.gene95988.t1 | MTR_4g095055 | 40.895 | 313 | 171 | 3 | 101 | 399 | 79 | 391 | 2.30e-76 | 243 |
| MS.gene95988.t1 | MTR_4g095055 | 41.475 | 217 | 113 | 3 | 101 | 303 | 79 | 295 | 6.56e-46 | 165 |
| MS.gene95988.t1 | MTR_4g095055 | 39.583 | 96 | 58 | 0 | 304 | 399 | 369 | 464 | 6.24e-17 | 83.2 |
| MS.gene95988.t1 | MTR_8g078070 | 36.948 | 249 | 137 | 7 | 111 | 346 | 92 | 333 | 4.36e-34 | 130 |
| MS.gene95988.t1 | MTR_5g019460 | 38.039 | 255 | 138 | 8 | 111 | 352 | 91 | 338 | 2.14e-33 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95988.t1 | AT1G17050 | 73.077 | 364 | 98 | 0 | 55 | 418 | 53 | 416 | 0.0 | 546 |
| MS.gene95988.t1 | AT1G78510 | 66.667 | 420 | 122 | 5 | 2 | 418 | 1 | 405 | 0.0 | 541 |
| MS.gene95988.t1 | AT1G78510 | 78.443 | 334 | 72 | 0 | 85 | 418 | 33 | 366 | 0.0 | 538 |
| MS.gene95988.t1 | AT2G34630 | 39.809 | 314 | 176 | 3 | 101 | 401 | 85 | 398 | 7.74e-73 | 234 |
| MS.gene95988.t1 | AT2G34630 | 40.067 | 297 | 165 | 3 | 118 | 401 | 1 | 297 | 2.41e-69 | 222 |
| MS.gene95988.t1 | AT4G36810 | 41.176 | 255 | 126 | 9 | 109 | 346 | 85 | 332 | 9.97e-38 | 140 |
| MS.gene95988.t1 | AT2G18620 | 39.773 | 264 | 138 | 9 | 111 | 360 | 66 | 322 | 1.43e-35 | 134 |
| MS.gene95988.t1 | AT2G18640 | 38.247 | 251 | 135 | 9 | 109 | 346 | 90 | 333 | 3.63e-33 | 128 |
| MS.gene95988.t1 | AT3G14510 | 40.417 | 240 | 121 | 8 | 136 | 360 | 27 | 259 | 1.50e-32 | 124 |
| MS.gene95988.t1 | AT3G20160 | 35.827 | 254 | 140 | 8 | 109 | 346 | 59 | 305 | 3.15e-31 | 122 |
| MS.gene95988.t1 | AT3G32040 | 35.955 | 267 | 150 | 7 | 109 | 360 | 75 | 335 | 1.81e-28 | 115 |
| MS.gene95988.t1 | AT2G23800 | 35.857 | 251 | 141 | 9 | 109 | 346 | 94 | 337 | 4.51e-28 | 114 |
| MS.gene95988.t1 | AT3G29430 | 35.581 | 267 | 151 | 7 | 109 | 360 | 72 | 332 | 1.51e-26 | 109 |
| MS.gene95988.t1 | AT3G20160 | 33.603 | 247 | 127 | 8 | 109 | 346 | 59 | 277 | 2.67e-26 | 108 |
| MS.gene95988.t1 | AT3G14550 | 35.581 | 267 | 151 | 8 | 109 | 360 | 75 | 335 | 2.96e-26 | 108 |
| MS.gene95988.t1 | AT3G14550 | 35.581 | 267 | 151 | 8 | 109 | 360 | 75 | 335 | 2.96e-26 | 108 |
| MS.gene95988.t1 | AT3G14550 | 35.581 | 267 | 151 | 8 | 109 | 360 | 75 | 335 | 2.96e-26 | 108 |
| MS.gene95988.t1 | AT3G14530 | 35.955 | 267 | 150 | 8 | 109 | 360 | 75 | 335 | 7.47e-26 | 107 |
| MS.gene95988.t1 | AT1G49530 | 32.000 | 225 | 131 | 6 | 137 | 345 | 78 | 296 | 2.03e-21 | 95.1 |
| MS.gene95988.t1 | AT4G38460 | 25.822 | 213 | 141 | 6 | 111 | 313 | 58 | 263 | 9.41e-14 | 72.4 |
Find 75 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAACCTATTTGGTGAAAT+AGG | 0.152420 | 2.4:-23730489 | None:intergenic |
| TCAATATCGTGTTTCTTCTA+TGG | 0.220495 | 2.4:+23729349 | MS.gene95988:CDS |
| ACTACTTCAAACAACCTATT+TGG | 0.233446 | 2.4:-23730498 | None:intergenic |
| ACAACCTATTTGGTGAAATA+GGG | 0.248193 | 2.4:-23730488 | None:intergenic |
| GAGACCGGCTCTTGTGTTCT+TGG | 0.257479 | 2.4:+23731095 | MS.gene95988:CDS |
| TTCTCCAACGCGAAAATTAC+AGG | 0.258160 | 2.4:-23732509 | None:intergenic |
| TTGATAGCTGCCAGTGTAAA+AGG | 0.265491 | 2.4:+23732314 | MS.gene95988:CDS |
| TCACTAGCTTACCTCTTCTT+AGG | 0.277873 | 2.4:-23731376 | None:intergenic |
| TGGAAATGAAGCTCGTAAAT+TGG | 0.286820 | 2.4:+23729301 | MS.gene95988:CDS |
| GGTTCTGACAGCAGCATTAC+TGG | 0.320627 | 2.4:+23732353 | MS.gene95988:CDS |
| GAAACTGTTCATCAAATGTT+TGG | 0.338601 | 2.4:+23731776 | MS.gene95988:CDS |
| CCAAGTTGTCGACGACATAT+TGG | 0.347498 | 2.4:+23732415 | MS.gene95988:CDS |
| CAACCCCTATTTCACCAAAT+AGG | 0.381053 | 2.4:+23730484 | MS.gene95988:CDS |
| TCAATGATATCCCTCAATTT+CGG | 0.393056 | 2.4:-23732536 | None:intergenic |
| TTTGGTGAAATAGGGGTTGC+TGG | 0.395241 | 2.4:-23730480 | None:intergenic |
| ACAAGAGTGGCAGTGCTTGC+TGG | 0.403160 | 2.4:+23731800 | MS.gene95988:CDS |
| CTCTTGTGTTCTTGGTGTCA+AGG | 0.413478 | 2.4:+23731103 | MS.gene95988:CDS |
| AGGAGCTGTCAGGTTACCTT+TGG | 0.418601 | 2.4:-23732489 | None:intergenic |
| TTGGCGAGGTCCGTGCCTGC+AGG | 0.424775 | 2.4:-23732470 | None:intergenic |
| TTCGAATACGGGAAGAATCT+CGG | 0.427444 | 2.4:+23732383 | MS.gene95988:CDS |
| CCAATATGTCGTCGACAACT+TGG | 0.427937 | 2.4:-23732415 | None:intergenic |
| GAGTCTGAATTTAGCGAGAT+TGG | 0.432083 | 2.4:+23732557 | MS.gene95988:CDS |
| GGTGTTGTGACAGGTGATTA+AGG | 0.439509 | 2.4:+23732193 | MS.gene95988:intron |
| ACTGGGAAAATGTTCGAATA+CGG | 0.449013 | 2.4:+23732371 | MS.gene95988:CDS |
| GCAATTAAAGACCTTGCAAA+AGG | 0.452757 | 2.4:+23730438 | MS.gene95988:CDS |
| TCAGCTGCAGATATTAAAAC+TGG | 0.453325 | 2.4:-23731042 | None:intergenic |
| TATGCTAAGGTGAATTCTAA+AGG | 0.455161 | 2.4:+23729275 | MS.gene95988:CDS |
| TCTTGTGTTCTTGGTGTCAA+GGG | 0.480305 | 2.4:+23731104 | MS.gene95988:CDS |
| ATCAAGTTGGTCAAGAGTTG+TGG | 0.496017 | 2.4:+23732596 | MS.gene95988:CDS |
| ACGCAATCGGCAGAGCAACT+TGG | 0.497280 | 2.4:+23732443 | MS.gene95988:CDS |
| CGAAAATTACAGGAGCTGTC+AGG | 0.497944 | 2.4:-23732499 | None:intergenic |
| ATGCTAAGGTGAATTCTAAA+GGG | 0.500417 | 2.4:+23729276 | MS.gene95988:CDS |
| TCATGTTTGCACAGTCATCA+TGG | 0.501280 | 2.4:+23731828 | MS.gene95988:CDS |
| CTGGGAAAATGTTCGAATAC+GGG | 0.503136 | 2.4:+23732372 | MS.gene95988:CDS |
| TGGAGAAAGAACCGAAATTG+AGG | 0.505243 | 2.4:+23732525 | MS.gene95988:CDS |
| ATTGAGTGTTTGAAGATCAT+CGG | 0.505570 | 2.4:-23730523 | None:intergenic |
| ATACCTATGAAAAGAAGCAT+TGG | 0.506870 | 2.4:-23729240 | None:intergenic |
| ACTTGGAAAGCCTGCAGGCA+CGG | 0.508298 | 2.4:+23732460 | MS.gene95988:CDS |
| AATTGGTTTGTTGTAAGAAG+AGG | 0.509786 | 2.4:+23729318 | MS.gene95988:CDS |
| CATATTGGATTTCACGCAAT+CGG | 0.510526 | 2.4:+23732430 | MS.gene95988:CDS |
| TCGAATACGGGAAGAATCTC+GGG | 0.511158 | 2.4:+23732384 | MS.gene95988:CDS |
| TCTTTAGTGCTGGTGGGAAG+AGG | 0.511599 | 2.4:+23731070 | MS.gene95988:CDS |
| ACTGCAGAGCCTACTTTGAA+TGG | 0.516676 | 2.4:+23729374 | MS.gene95988:CDS |
| GAGCAACTTGGAAAGCCTGC+AGG | 0.520485 | 2.4:+23732455 | MS.gene95988:CDS |
| GGATGCTCTTGATAGATTGT+AGG | 0.526067 | 2.4:+23731009 | MS.gene95988:intron |
| GGAGAAAGAACCGAAATTGA+GGG | 0.533563 | 2.4:+23732526 | MS.gene95988:CDS |
| GCTAAACGATACACACTTGG+AGG | 0.537311 | 2.4:-23732689 | None:intergenic |
| TCAAGTTGGTCAAGAGTTGT+GGG | 0.539471 | 2.4:+23732597 | MS.gene95988:CDS |
| AGTCATTAAACTTATCAGCC+AGG | 0.539916 | 2.4:+23731877 | MS.gene95988:CDS |
| CAACCTATTTGGTGAAATAG+GGG | 0.541722 | 2.4:-23730487 | None:intergenic |
| AAGGTGAATTCTAAAGGGTG+TGG | 0.545230 | 2.4:+23729281 | MS.gene95988:CDS |
| TCGTTTAGCTCTCGAGGACA+TGG | 0.554498 | 2.4:+23732703 | MS.gene95988:CDS |
| GCTGAGCAGATCTTTAGTGC+TGG | 0.564731 | 2.4:+23731060 | MS.gene95988:CDS |
| GACACCAAGAACACAAGAGC+CGG | 0.565484 | 2.4:-23731099 | None:intergenic |
| AGGGCGACCGCAGAGCTACA+TGG | 0.569025 | 2.4:+23731123 | MS.gene95988:CDS |
| GAGCAGATCTTTAGTGCTGG+TGG | 0.569958 | 2.4:+23731063 | MS.gene95988:CDS |
| AGCAGATCTTTAGTGCTGGT+GGG | 0.574274 | 2.4:+23731064 | MS.gene95988:CDS |
| GATGAGAGTGACCTAAGAAG+AGG | 0.576816 | 2.4:+23731365 | MS.gene95988:CDS |
| AATCGAACGAGCACAAGAGT+TGG | 0.579042 | 2.4:+23732622 | MS.gene95988:CDS |
| TGGTGACATATAATCTTCAA+AGG | 0.582035 | 2.4:+23732723 | MS.gene95988:CDS |
| GCAGGCACGGACCTCGCCAA+AGG | 0.584554 | 2.4:+23732473 | MS.gene95988:CDS |
| TGAAGTCAAGAATTATGCTA+AGG | 0.586221 | 2.4:+23729262 | MS.gene95988:CDS |
| GTTCTGACAGCAGCATTACT+GGG | 0.587233 | 2.4:+23732354 | MS.gene95988:CDS |
| TATGTCGTCGACAACTTGGA+AGG | 0.598026 | 2.4:-23732411 | None:intergenic |
| TGTGTATCGTTTAGCTCTCG+AGG | 0.605816 | 2.4:+23732697 | MS.gene95988:CDS |
| TCAAATGTTTGGAACAAGAG+TGG | 0.606800 | 2.4:+23731787 | MS.gene95988:CDS |
| TGGTGGGAAGAGGATGAGAC+CGG | 0.611153 | 2.4:+23731080 | MS.gene95988:CDS |
| ATCACTGTACCATTCAAAGT+AGG | 0.612430 | 2.4:-23729383 | None:intergenic |
| CTGTCAGGTTACCTTTGGCG+AGG | 0.615618 | 2.4:-23732484 | None:intergenic |
| AGAGCTAAACGATACACACT+TGG | 0.617198 | 2.4:-23732692 | None:intergenic |
| GCTTGACGAAGCAATCAAGT+TGG | 0.625027 | 2.4:+23732583 | MS.gene95988:CDS |
| AAGTTGGTCAAGAGTTGTGG+GGG | 0.644966 | 2.4:+23732599 | MS.gene95988:CDS |
| CAAGTTGGTCAAGAGTTGTG+GGG | 0.662378 | 2.4:+23732598 | MS.gene95988:CDS |
| CTCAAGGCCATGTAGCTCTG+CGG | 0.684430 | 2.4:-23731130 | None:intergenic |
| TACACTGGCAGCTATCAAGG+AGG | 0.706437 | 2.4:-23732309 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTGATAAATCTTT+TGG | + | chr2.4:23732172-23732191 | MS.gene95988:intron | 10.0% |
| !!! | TTTTTCTTTCAAATTATTAT+CGG | + | chr2.4:23730276-23730295 | MS.gene95988:intron | 10.0% |
| !! | AAAATGTCAAGAAAATTAAA+CGG | - | chr2.4:23731419-23731438 | None:intergenic | 15.0% |
| !! | TGATCAAATAAATTATAACA+TGG | - | chr2.4:23731529-23731548 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTTGTTACATCA+AGG | - | chr2.4:23732090-23732109 | None:intergenic | 15.0% |
| !! | ATATGTTAATTTAACTGATG+AGG | + | chr2.4:23730988-23731007 | MS.gene95988:intron | 20.0% |
| !! | CATCAGTTAAATTAACATAT+AGG | - | chr2.4:23730988-23731007 | None:intergenic | 20.0% |
| !! | TATTAATTGAAAGCAAAACA+TGG | - | chr2.4:23731750-23731769 | None:intergenic | 20.0% |
| !! | TCTGATAATTCTAATATTGT+CGG | - | chr2.4:23729984-23730003 | None:intergenic | 20.0% |
| !! | TGGTATATACATTCATAAAA+AGG | + | chr2.4:23731693-23731712 | MS.gene95988:intron | 20.0% |
| !!! | AGATATTAAAACTGGATTTT+CGG | - | chr2.4:23731037-23731056 | None:intergenic | 20.0% |
| !!! | ATGTTTTGCTTTCAATTAAT+AGG | + | chr2.4:23731749-23731768 | MS.gene95988:intron | 20.0% |
| !!! | TGATTTTTTTGGTAAAAACT+TGG | + | chr2.4:23729199-23729218 | MS.gene95988:CDS | 20.0% |
| !!! | TGTTTTGCTTTCAATTAATA+GGG | + | chr2.4:23731750-23731769 | MS.gene95988:intron | 20.0% |
| !!! | TTTTAAAAGATGTATAGTGA+TGG | - | chr2.4:23731909-23731928 | None:intergenic | 20.0% |
| ! | AACTTTGGCATTAAAAGATT+TGG | + | chr2.4:23730394-23730413 | MS.gene95988:intron | 25.0% |
| ! | AATTGAATGTTACATGTGTT+TGG | - | chr2.4:23730247-23730266 | None:intergenic | 25.0% |
| ! | ACAATATATGTCAATTCTGT+TGG | - | chr2.4:23730218-23730237 | None:intergenic | 25.0% |
| ! | ATGTATATACCAATTTGTCA+AGG | - | chr2.4:23731685-23731704 | None:intergenic | 25.0% |
| ! | ATTTCATAAATGCTTAGCAT+AGG | + | chr2.4:23732112-23732131 | MS.gene95988:intron | 25.0% |
| ! | TAGTGATACTTGTTTAGAAA+TGG | + | chr2.4:23731393-23731412 | MS.gene95988:intron | 25.0% |
| ! | TCTGACAATTCTAATATTGT+CGG | - | chr2.4:23730101-23730120 | None:intergenic | 25.0% |
| ! | TGTGATATACAATTTAGTAC+AGG | - | chr2.4:23730821-23730840 | None:intergenic | 25.0% |
| ! | TTTCATAAATGCTTAGCATA+GGG | + | chr2.4:23732113-23732132 | MS.gene95988:intron | 25.0% |
| !! | ATATCAGTTACTTTGTTTGA+GGG | + | chr2.4:23732035-23732054 | MS.gene95988:intron | 25.0% |
| !! | ATTGTTCAGTGATTTTAAAC+AGG | + | chr2.4:23730703-23730722 | MS.gene95988:intron | 25.0% |
| !! | GTTTAAAATCACTGAACAAT+GGG | - | chr2.4:23730703-23730722 | None:intergenic | 25.0% |
| !! | TAATAATTTGAAGTGTGTTG+TGG | + | chr2.4:23729423-23729442 | MS.gene95988:intron | 25.0% |
| !! | TAATGACTTCAATGTTTTCA+AGG | - | chr2.4:23731865-23731884 | None:intergenic | 25.0% |
| !! | TGTTTAAAATCACTGAACAA+TGG | - | chr2.4:23730704-23730723 | None:intergenic | 25.0% |
| !! | TTCATTTTGTACATACTATG+TGG | + | chr2.4:23730041-23730060 | MS.gene95988:intron | 25.0% |
| !! | TTCATTTTGTATGTACTATG+TGG | + | chr2.4:23729583-23729602 | MS.gene95988:intron | 25.0% |
| !!! | AGCAAAAGCATTGATTTTTT+TGG | + | chr2.4:23729188-23729207 | MS.gene95988:CDS | 25.0% |
| !!! | ATTTGGTTTGGTTTTTGAAT+AGG | + | chr2.4:23730411-23730430 | MS.gene95988:intron | 25.0% |
| AAAGAAATACTCAAACAGAC+AGG | - | chr2.4:23730640-23730659 | None:intergenic | 30.0% | |
| AAATTGTCAGATATTGTCGA+AGG | + | chr2.4:23729876-23729895 | MS.gene95988:intron | 30.0% | |
| ACTACTTCAAACAACCTATT+TGG | - | chr2.4:23730501-23730520 | None:intergenic | 30.0% | |
| AGTATGAAAGGACATATGTT+AGG | + | chr2.4:23731991-23732010 | MS.gene95988:intron | 30.0% | |
| AGTATGAGAAAAATTGCGTT+AGG | - | chr2.4:23731475-23731494 | None:intergenic | 30.0% | |
| AGTGTAGCGTAATTCAAAAA+TGG | - | chr2.4:23730759-23730778 | None:intergenic | 30.0% | |
| ATACATAGCAGATGTATCTT+TGG | - | chr2.4:23731660-23731679 | None:intergenic | 30.0% | |
| ATGCTAAGGTGAATTCTAAA+GGG | + | chr2.4:23729276-23729295 | MS.gene95988:CDS | 30.0% | |
| ATTGAGTGTTTGAAGATCAT+CGG | - | chr2.4:23730526-23730545 | None:intergenic | 30.0% | |
| CCAAATTACAACAAAGTTTC+AGG | - | chr2.4:23731581-23731600 | None:intergenic | 30.0% | |
| CTTTCAAATTATTATCGGTC+TGG | + | chr2.4:23730281-23730300 | MS.gene95988:intron | 30.0% | |
| GAAACTGTTCATCAAATGTT+TGG | + | chr2.4:23731776-23731795 | MS.gene95988:CDS | 30.0% | |
| GAATTATCAGATATTGTCGA+AGG | + | chr2.4:23729993-23730012 | MS.gene95988:intron | 30.0% | |
| GACACAATTATAAGCAACTA+AGG | - | chr2.4:23730613-23730632 | None:intergenic | 30.0% | |
| GAGATTTGTATACTTACTCA+AGG | - | chr2.4:23731149-23731168 | None:intergenic | 30.0% | |
| GATTGAATGTTACATATGTC+TGG | - | chr2.4:23729677-23729696 | None:intergenic | 30.0% | |
| TATGCTAAGGTGAATTCTAA+AGG | + | chr2.4:23729275-23729294 | MS.gene95988:CDS | 30.0% | |
| TATGTATCACCTTGACAAAT+TGG | + | chr2.4:23731673-23731692 | MS.gene95988:intron | 30.0% | |
| TCAATATCGTGTTTCTTCTA+TGG | + | chr2.4:23729349-23729368 | MS.gene95988:CDS | 30.0% | |
| TCAATGATATCCCTCAATTT+CGG | - | chr2.4:23732539-23732558 | None:intergenic | 30.0% | |
| TGAAGTCAAGAATTATGCTA+AGG | + | chr2.4:23729262-23729281 | MS.gene95988:CDS | 30.0% | |
| TGGTGACATATAATCTTCAA+AGG | + | chr2.4:23732723-23732742 | MS.gene95988:CDS | 30.0% | |
| TTGCTTTCAATTAATAGGGA+AGG | + | chr2.4:23731754-23731773 | MS.gene95988:intron | 30.0% | |
| TTGTATGAGTCATTACATGT+CGG | + | chr2.4:23731620-23731639 | MS.gene95988:intron | 30.0% | |
| TTTCAAATTCTGCTATGCTA+TGG | + | chr2.4:23730856-23730875 | MS.gene95988:intron | 30.0% | |
| ! | AACAACCTATTTGGTGAAAT+AGG | - | chr2.4:23730492-23730511 | None:intergenic | 30.0% |
| ! | ACAACCTATTTGGTGAAATA+GGG | - | chr2.4:23730491-23730510 | None:intergenic | 30.0% |
| ! | ATACCTATGAAAAGAAGCAT+TGG | - | chr2.4:23729243-23729262 | None:intergenic | 30.0% |
| ! | ATCTTGGAATGATGATTTTG+CGG | - | chr2.4:23731954-23731973 | None:intergenic | 30.0% |
| ! | CCTGAAACTTTGTTGTAATT+TGG | + | chr2.4:23731578-23731597 | MS.gene95988:intron | 30.0% |
| ! | CTCATACTTTACAGTCATTT+TGG | + | chr2.4:23731487-23731506 | MS.gene95988:intron | 30.0% |
| ! | GATATCAGTTACTTTGTTTG+AGG | + | chr2.4:23732034-23732053 | MS.gene95988:intron | 30.0% |
| ! | TATCTTATTGAAAGTGTGTC+TGG | + | chr2.4:23729497-23729516 | MS.gene95988:intron | 30.0% |
| ! | TGGCATTAAAAGATTTGGTT+TGG | + | chr2.4:23730399-23730418 | MS.gene95988:intron | 30.0% |
| !! | AATTGGTTTGTTGTAAGAAG+AGG | + | chr2.4:23729318-23729337 | MS.gene95988:CDS | 30.0% |
| !! | TGATTTTAGAAGTGGAACTT+TGG | + | chr2.4:23730379-23730398 | MS.gene95988:intron | 30.0% |
| !!! | AGTCATTTTGGTTTTGATCT+TGG | + | chr2.4:23731499-23731518 | MS.gene95988:intron | 30.0% |
| !!! | GTTCGTATTGATTTTAGAAG+TGG | + | chr2.4:23730371-23730390 | MS.gene95988:intron | 30.0% |
| !!! | TGTAGTACTGATACTTTTGA+TGG | + | chr2.4:23729601-23729620 | MS.gene95988:intron | 30.0% |
| ACTGGGAAAATGTTCGAATA+CGG | + | chr2.4:23732371-23732390 | MS.gene95988:CDS | 35.0% | |
| AGAAAAGCTGAAAAGCAAGA+AGG | - | chr2.4:23730931-23730950 | None:intergenic | 35.0% | |
| AGTCATTAAACTTATCAGCC+AGG | + | chr2.4:23731877-23731896 | MS.gene95988:CDS | 35.0% | |
| ATCACTGTACCATTCAAAGT+AGG | - | chr2.4:23729386-23729405 | None:intergenic | 35.0% | |
| ATCTTGAAACGAATGATTGC+AGG | + | chr2.4:23731261-23731280 | MS.gene95988:intron | 35.0% | |
| CATATTGGATTTCACGCAAT+CGG | + | chr2.4:23732430-23732449 | MS.gene95988:CDS | 35.0% | |
| GAATTGTCAGATATTGTCGA+AGG | + | chr2.4:23729651-23729670 | MS.gene95988:intron | 35.0% | |
| GACATATGTCAGAGATGTAA+AGG | - | chr2.4:23731559-23731578 | None:intergenic | 35.0% | |
| GACTGAATGAAACATGTGTA+TGG | - | chr2.4:23729561-23729580 | None:intergenic | 35.0% | |
| GATTGAATGTTCCATATGTC+TGG | - | chr2.4:23730019-23730038 | None:intergenic | 35.0% | |
| GCAATTAAAGACCTTGCAAA+AGG | + | chr2.4:23730438-23730457 | MS.gene95988:CDS | 35.0% | |
| GGAAATCAAATGTCACAGTT+TGG | - | chr2.4:23731729-23731748 | None:intergenic | 35.0% | |
| GGTAAAAACTTGGTTTCTTG+TGG | + | chr2.4:23729209-23729228 | MS.gene95988:CDS | 35.0% | |
| GTAACTGATATCCATTTACG+AGG | - | chr2.4:23732026-23732045 | None:intergenic | 35.0% | |
| GTATCAGAATTATCTGACAC+CGG | + | chr2.4:23729529-23729548 | MS.gene95988:intron | 35.0% | |
| TAAATGCTTAGCATAGGGTA+TGG | + | chr2.4:23732118-23732137 | MS.gene95988:intron | 35.0% | |
| TCAGCTGCAGATATTAAAAC+TGG | - | chr2.4:23731045-23731064 | None:intergenic | 35.0% | |
| TCTTGAAACGAATGATTGCA+GGG | + | chr2.4:23731262-23731281 | MS.gene95988:intron | 35.0% | |
| TGGAAATGAAGCTCGTAAAT+TGG | + | chr2.4:23729301-23729320 | MS.gene95988:CDS | 35.0% | |
| ! | AGTTACTTTGTTTGAGGGAT+TGG | + | chr2.4:23732040-23732059 | MS.gene95988:intron | 35.0% |
| ! | CAACCTATTTGGTGAAATAG+GGG | - | chr2.4:23730490-23730509 | None:intergenic | 35.0% |
| ! | CTATGTACTGATACTTCTGA+TGG | + | chr2.4:23729825-23729844 | MS.gene95988:intron | 35.0% |
| ! | CTTCCAATGCTTCTTTTCAT+AGG | + | chr2.4:23729237-23729256 | MS.gene95988:CDS | 35.0% |
| ! | GTGATTAAGGATTTTGCTAG+TGG | + | chr2.4:23732206-23732225 | MS.gene95988:CDS | 35.0% |
| ! | GTTACTTTGTTTGAGGGATT+GGG | + | chr2.4:23732041-23732060 | MS.gene95988:intron | 35.0% |
| ! | TCAAATGTTTGGAACAAGAG+TGG | + | chr2.4:23731787-23731806 | MS.gene95988:CDS | 35.0% |
| ! | TCAAGTTCAATCCTTTTGCA+AGG | - | chr2.4:23730452-23730471 | None:intergenic | 35.0% |
| ! | TTCATTTTGTACGTGCTATG+TGG | + | chr2.4:23729924-23729943 | MS.gene95988:intron | 35.0% |
| !! | ACTTTTGATGGAAAGTGTGT+TGG | + | chr2.4:23729613-23729632 | MS.gene95988:intron | 35.0% |
| !! | GACTTCAATGTTTTCAAGGT+TGG | - | chr2.4:23731861-23731880 | None:intergenic | 35.0% |
| !!! | AAATCTTTTGGTGTTGTGAC+AGG | + | chr2.4:23732184-23732203 | MS.gene95988:intron | 35.0% |
| !!! | TGGTTTGGTTTTTGAATAGG+TGG | + | chr2.4:23730414-23730433 | MS.gene95988:intron | 35.0% |
| AATACTCAAACAGACAGGAC+AGG | - | chr2.4:23730635-23730654 | None:intergenic | 40.0% | |
| AGAGCTAAACGATACACACT+TGG | - | chr2.4:23732695-23732714 | None:intergenic | 40.0% | |
| CAACCCCTATTTCACCAAAT+AGG | + | chr2.4:23730484-23730503 | MS.gene95988:CDS | 40.0% | |
| CTGGGAAAATGTTCGAATAC+GGG | + | chr2.4:23732372-23732391 | MS.gene95988:CDS | 40.0% | |
| GAGTCTGAATTTAGCGAGAT+TGG | + | chr2.4:23732557-23732576 | MS.gene95988:CDS | 40.0% | |
| GGAGAAAGAACCGAAATTGA+GGG | + | chr2.4:23732526-23732545 | MS.gene95988:CDS | 40.0% | |
| GGATGCTCTTGATAGATTGT+AGG | + | chr2.4:23731009-23731028 | MS.gene95988:intron | 40.0% | |
| TAGCTGCTATTGGACAATAC+TGG | + | chr2.4:23730884-23730903 | MS.gene95988:intron | 40.0% | |
| TCATGTTTGCACAGTCATCA+TGG | + | chr2.4:23731828-23731847 | MS.gene95988:CDS | 40.0% | |
| TCATTCCAAGATTCAATCCC+TGG | + | chr2.4:23731962-23731981 | MS.gene95988:intron | 40.0% | |
| TGGAGAAAGAACCGAAATTG+AGG | + | chr2.4:23732525-23732544 | MS.gene95988:CDS | 40.0% | |
| TTCGAATACGGGAAGAATCT+CGG | + | chr2.4:23732383-23732402 | MS.gene95988:CDS | 40.0% | |
| TTCTCCAACGCGAAAATTAC+AGG | - | chr2.4:23732512-23732531 | None:intergenic | 40.0% | |
| TTGTCAAATAGCCGCTATTG+CGG | - | chr2.4:23730796-23730815 | None:intergenic | 40.0% | |
| ! | AAGGTGAATTCTAAAGGGTG+TGG | + | chr2.4:23729281-23729300 | MS.gene95988:CDS | 40.0% |
| ! | CTTCTGATCGAAAGTGTGTA+TGG | + | chr2.4:23729730-23729749 | MS.gene95988:intron | 40.0% |
| ! | GGGTATCATTCACGTTTTTC+TGG | - | chr2.4:23730683-23730702 | None:intergenic | 40.0% |
| ! | TCACTAGCTTACCTCTTCTT+AGG | - | chr2.4:23731379-23731398 | None:intergenic | 40.0% |
| ! | TTGATAGCTGCCAGTGTAAA+AGG | + | chr2.4:23732314-23732333 | MS.gene95988:CDS | 40.0% |
| ! | TTTTACACTGGCAGCTATCA+AGG | - | chr2.4:23732315-23732334 | None:intergenic | 40.0% |
| !! | ATCAAGTTGGTCAAGAGTTG+TGG | + | chr2.4:23732596-23732615 | MS.gene95988:CDS | 40.0% |
| !! | TCAAGTTGGTCAAGAGTTGT+GGG | + | chr2.4:23732597-23732616 | MS.gene95988:CDS | 40.0% |
| !! | TCTTGTGTTCTTGGTGTCAA+GGG | + | chr2.4:23731104-23731123 | MS.gene95988:CDS | 40.0% |
| !! | TGTGGTACTGATACTTCTGA+TGG | + | chr2.4:23729942-23729961 | MS.gene95988:intron | 40.0% |
| AACATGTGTATGGAGTTCGC+CGG | - | chr2.4:23729551-23729570 | None:intergenic | 45.0% | |
| AATCGAACGAGCACAAGAGT+TGG | + | chr2.4:23732622-23732641 | MS.gene95988:CDS | 45.0% | |
| ACCAACCAGGGATTGAATCT+TGG | - | chr2.4:23731970-23731989 | None:intergenic | 45.0% | |
| ACTGCAGAGCCTACTTTGAA+TGG | + | chr2.4:23729374-23729393 | MS.gene95988:CDS | 45.0% | |
| ATTGTCGAAGGCCAGACATA+TGG | + | chr2.4:23729888-23729907 | MS.gene95988:intron | 45.0% | |
| CCAAGTTGTCGACGACATAT+TGG | + | chr2.4:23732415-23732434 | MS.gene95988:CDS | 45.0% | |
| CCAATATGTCGTCGACAACT+TGG | - | chr2.4:23732418-23732437 | None:intergenic | 45.0% | |
| CCTTTCATACTCACCAACCA+GGG | - | chr2.4:23731982-23732001 | None:intergenic | 45.0% | |
| CGAAAATTACAGGAGCTGTC+AGG | - | chr2.4:23732502-23732521 | None:intergenic | 45.0% | |
| GATGAGAGTGACCTAAGAAG+AGG | + | chr2.4:23731365-23731384 | MS.gene95988:CDS | 45.0% | |
| GCGGATGCAAGTGAAAGATA+AGG | - | chr2.4:23731935-23731954 | None:intergenic | 45.0% | |
| GCTAAACGATACACACTTGG+AGG | - | chr2.4:23732692-23732711 | None:intergenic | 45.0% | |
| GCTTGACGAAGCAATCAAGT+TGG | + | chr2.4:23732583-23732602 | MS.gene95988:CDS | 45.0% | |
| GTTCTGACAGCAGCATTACT+GGG | + | chr2.4:23732354-23732373 | MS.gene95988:CDS | 45.0% | |
| TATGGCGCTATAGCTGCTAT+TGG | + | chr2.4:23730874-23730893 | MS.gene95988:intron | 45.0% | |
| TATGTCGTCGACAACTTGGA+AGG | - | chr2.4:23732414-23732433 | None:intergenic | 45.0% | |
| TCCAAGATTCAATCCCTGGT+TGG | + | chr2.4:23731966-23731985 | MS.gene95988:intron | 45.0% | |
| TCCTTTCATACTCACCAACC+AGG | - | chr2.4:23731983-23732002 | None:intergenic | 45.0% | |
| TCGAATACGGGAAGAATCTC+GGG | + | chr2.4:23732384-23732403 | MS.gene95988:CDS | 45.0% | |
| TTGCGTTAGGACATGCACAA+TGG | - | chr2.4:23731462-23731481 | None:intergenic | 45.0% | |
| TTTGGTGAAATAGGGGTTGC+TGG | - | chr2.4:23730483-23730502 | None:intergenic | 45.0% | |
| ! | AAAGGAGCTGCAGTTTTCAG+CGG | + | chr2.4:23732332-23732351 | MS.gene95988:CDS | 45.0% |
| ! | AACTGCAGCTCCTTTTACAC+TGG | - | chr2.4:23732327-23732346 | None:intergenic | 45.0% |
| ! | AAGTTGGTCAAGAGTTGTGG+GGG | + | chr2.4:23732599-23732618 | MS.gene95988:CDS | 45.0% |
| ! | AGCTCCTGTAATTTTCGCGT+TGG | + | chr2.4:23732505-23732524 | MS.gene95988:CDS | 45.0% |
| ! | CTTCTGATGGAAAGTGTGTC+TGG | + | chr2.4:23729838-23729857 | MS.gene95988:intron | 45.0% |
| ! | GAAAGTGTGTTGGTGTCTGA+CGG | + | chr2.4:23729623-23729642 | MS.gene95988:intron | 45.0% |
| ! | GACATGTAAGTGTGTCACTG+CGG | + | chr2.4:23730303-23730322 | MS.gene95988:intron | 45.0% |
| ! | GGTGTTGTGACAGGTGATTA+AGG | + | chr2.4:23732193-23732212 | MS.gene95988:intron | 45.0% |
| ! | GTATAGTGATGGAACTCACC+TGG | - | chr2.4:23731898-23731917 | None:intergenic | 45.0% |
| !! | AGCAGATCTTTAGTGCTGGT+GGG | + | chr2.4:23731064-23731083 | MS.gene95988:CDS | 45.0% |
| !! | CAAGTTGGTCAAGAGTTGTG+GGG | + | chr2.4:23732598-23732617 | MS.gene95988:CDS | 45.0% |
| !! | CTCTTGTGTTCTTGGTGTCA+AGG | + | chr2.4:23731103-23731122 | MS.gene95988:CDS | 45.0% |
| !! | TGTGTATCGTTTAGCTCTCG+AGG | + | chr2.4:23732697-23732716 | MS.gene95988:CDS | 45.0% |
| AGGAGCTGTCAGGTTACCTT+TGG | - | chr2.4:23732492-23732511 | None:intergenic | 50.0% | |
| GAAAAGCAAGAAGGCTCAGC+AGG | - | chr2.4:23730922-23730941 | None:intergenic | 50.0% | |
| GACACCAAGAACACAAGAGC+CGG | - | chr2.4:23731102-23731121 | None:intergenic | 50.0% | |
| GCGCTATAGTACCGCAATAG+CGG | + | chr2.4:23730782-23730801 | MS.gene95988:intron | 50.0% | |
| GCTGAGCAGATCTTTAGTGC+TGG | + | chr2.4:23731060-23731079 | MS.gene95988:CDS | 50.0% | |
| GGATACGTCAGCCTCGTAAA+TGG | + | chr2.4:23732012-23732031 | MS.gene95988:intron | 50.0% | |
| TACACTGGCAGCTATCAAGG+AGG | - | chr2.4:23732312-23732331 | None:intergenic | 50.0% | |
| ! | GAGCAGATCTTTAGTGCTGG+TGG | + | chr2.4:23731063-23731082 | MS.gene95988:CDS | 50.0% |
| ! | GGTTCTGACAGCAGCATTAC+TGG | + | chr2.4:23732353-23732372 | MS.gene95988:CDS | 50.0% |
| !! | CCCTGGTTGGTGAGTATGAA+AGG | + | chr2.4:23731979-23731998 | MS.gene95988:intron | 50.0% |
| !! | TCGTTTAGCTCTCGAGGACA+TGG | + | chr2.4:23732703-23732722 | MS.gene95988:CDS | 50.0% |
| !! | TCTTTAGTGCTGGTGGGAAG+AGG | + | chr2.4:23731070-23731089 | MS.gene95988:CDS | 50.0% |
| ACAAGAGTGGCAGTGCTTGC+TGG | + | chr2.4:23731800-23731819 | MS.gene95988:CDS | 55.0% | |
| ACGCAATCGGCAGAGCAACT+TGG | + | chr2.4:23732443-23732462 | MS.gene95988:CDS | 55.0% | |
| ACTTGGAAAGCCTGCAGGCA+CGG | + | chr2.4:23732460-23732479 | MS.gene95988:CDS | 55.0% | |
| AGTGTGCGCAAGTGTGTGAC+AGG | - | chr2.4:23731180-23731199 | None:intergenic | 55.0% | |
| CTGTCAGGTTACCTTTGGCG+AGG | - | chr2.4:23732487-23732506 | None:intergenic | 55.0% | |
| GAGCAACTTGGAAAGCCTGC+AGG | + | chr2.4:23732455-23732474 | MS.gene95988:CDS | 55.0% | |
| GGTAACCCTGCACACAACTG+TGG | - | chr2.4:23732069-23732088 | None:intergenic | 55.0% | |
| GTGTGCGCAAGTGTGTGACA+GGG | - | chr2.4:23731179-23731198 | None:intergenic | 55.0% | |
| TGGTGGGAAGAGGATGAGAC+CGG | + | chr2.4:23731080-23731099 | MS.gene95988:CDS | 55.0% | |
| ! | CTCAAGGCCATGTAGCTCTG+CGG | - | chr2.4:23731133-23731152 | None:intergenic | 55.0% |
| ! | GAGACCGGCTCTTGTGTTCT+TGG | + | chr2.4:23731095-23731114 | MS.gene95988:CDS | 55.0% |
| GGGCTCCACAGTTGTGTGCA+GGG | + | chr2.4:23732061-23732080 | MS.gene95988:intron | 60.0% | |
| TGGGCTCCACAGTTGTGTGC+AGG | + | chr2.4:23732060-23732079 | MS.gene95988:intron | 60.0% | |
| AGGGCGACCGCAGAGCTACA+TGG | + | chr2.4:23731123-23731142 | MS.gene95988:CDS | 65.0% | |
| GCAGGCACGGACCTCGCCAA+AGG | + | chr2.4:23732473-23732492 | MS.gene95988:CDS | 70.0% | |
| TTGGCGAGGTCCGTGCCTGC+AGG | - | chr2.4:23732473-23732492 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 23729173 | 23732754 | 23729173 | ID=MS.gene95988 |
| chr2.4 | mRNA | 23729173 | 23732754 | 23729173 | ID=MS.gene95988.t1;Parent=MS.gene95988 |
| chr2.4 | exon | 23729173 | 23729395 | 23729173 | ID=MS.gene95988.t1.exon1;Parent=MS.gene95988.t1 |
| chr2.4 | CDS | 23729173 | 23729395 | 23729173 | ID=cds.MS.gene95988.t1;Parent=MS.gene95988.t1 |
| chr2.4 | exon | 23730433 | 23730560 | 23730433 | ID=MS.gene95988.t1.exon2;Parent=MS.gene95988.t1 |
| chr2.4 | CDS | 23730433 | 23730560 | 23730433 | ID=cds.MS.gene95988.t1;Parent=MS.gene95988.t1 |
| chr2.4 | exon | 23731024 | 23731151 | 23731024 | ID=MS.gene95988.t1.exon3;Parent=MS.gene95988.t1 |
| chr2.4 | CDS | 23731024 | 23731151 | 23731024 | ID=cds.MS.gene95988.t1;Parent=MS.gene95988.t1 |
| chr2.4 | exon | 23731283 | 23731386 | 23731283 | ID=MS.gene95988.t1.exon4;Parent=MS.gene95988.t1 |
| chr2.4 | CDS | 23731283 | 23731386 | 23731283 | ID=cds.MS.gene95988.t1;Parent=MS.gene95988.t1 |
| chr2.4 | exon | 23731771 | 23731898 | 23731771 | ID=MS.gene95988.t1.exon5;Parent=MS.gene95988.t1 |
| chr2.4 | CDS | 23731771 | 23731898 | 23731771 | ID=cds.MS.gene95988.t1;Parent=MS.gene95988.t1 |
| chr2.4 | exon | 23732206 | 23732754 | 23732206 | ID=MS.gene95988.t1.exon6;Parent=MS.gene95988.t1 |
| chr2.4 | CDS | 23732206 | 23732754 | 23732206 | ID=cds.MS.gene95988.t1;Parent=MS.gene95988.t1 |
| Gene Sequence |
| Protein sequence |
