AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56598


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56598.t1 MTR_2g072470 98.812 421 3 1 1 419 1 421 0.0 851
MS.gene56598.t1 MTR_4g095055 36.292 383 222 6 39 399 9 391 2.00e-76 243
MS.gene56598.t1 MTR_4g095055 35.192 287 164 6 39 303 9 295 7.81e-46 165
MS.gene56598.t1 MTR_4g095055 39.583 96 58 0 304 399 369 464 6.59e-17 82.8
MS.gene56598.t1 MTR_8g078070 37.349 249 136 7 111 346 92 333 4.26e-35 133
MS.gene56598.t1 MTR_5g019460 37.008 254 142 6 111 352 91 338 1.32e-34 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56598.t1 AT1G17050 73.352 364 97 0 55 418 53 416 0.0 548
MS.gene56598.t1 AT1G78510 67.064 419 122 3 2 418 1 405 0.0 545
MS.gene56598.t1 AT1G78510 78.743 334 71 0 85 418 33 366 0.0 540
MS.gene56598.t1 AT2G34630 39.809 314 176 3 101 401 85 398 1.69e-72 234
MS.gene56598.t1 AT2G34630 40.067 297 165 3 118 401 1 297 4.26e-69 221
MS.gene56598.t1 AT4G36810 41.176 255 126 9 109 346 85 332 4.67e-38 141
MS.gene56598.t1 AT2G18620 40.152 264 137 9 111 360 66 322 5.03e-36 135
MS.gene56598.t1 AT2G18640 38.000 250 137 7 109 346 90 333 2.43e-34 131
MS.gene56598.t1 AT3G14510 39.331 239 125 6 136 360 27 259 2.94e-33 126
MS.gene56598.t1 AT3G20160 35.827 254 140 8 109 346 59 305 1.63e-31 123
MS.gene56598.t1 AT3G32040 35.955 267 150 7 109 360 75 335 3.65e-29 117
MS.gene56598.t1 AT2G23800 35.857 251 141 9 109 346 94 337 2.00e-28 115
MS.gene56598.t1 AT3G29430 35.955 267 150 7 109 360 72 332 1.10e-27 113
MS.gene56598.t1 AT3G14550 35.955 267 150 8 109 360 75 335 1.83e-27 112
MS.gene56598.t1 AT3G14550 35.955 267 150 8 109 360 75 335 1.83e-27 112
MS.gene56598.t1 AT3G14550 35.955 267 150 8 109 360 75 335 1.83e-27 112
MS.gene56598.t1 AT3G14530 36.330 267 149 8 109 360 75 335 5.55e-27 111
MS.gene56598.t1 AT3G20160 33.603 247 127 8 109 346 59 277 1.24e-26 109
MS.gene56598.t1 AT1G49530 32.444 225 130 6 137 345 78 296 1.84e-22 97.8

Find 75 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACCTATTTGGTGAAAT+AGG 0.152420 2.1:-26208107 None:intergenic
TCAATATCGGGTTTCTTCTA+TGG 0.210510 2.1:+26206829 MS.gene56598:CDS
GAGACCAGCTCTTGTGTTCT+TGG 0.226567 2.1:+26208713 MS.gene56598:CDS
ACTACTTCAAACAACCTATT+TGG 0.233446 2.1:-26208116 None:intergenic
ACAACCTATTTGGTGAAATA+GGG 0.248193 2.1:-26208106 None:intergenic
GGCTAAACGTCGATGCTTTA+CGG 0.286782 2.1:-26208913 None:intergenic
TCACTAGCTTACCTCTTCTT+AGG 0.317476 2.1:-26208998 None:intergenic
TGGAAATGGAGCTCGTAAAT+TGG 0.324226 2.1:+26206781 MS.gene56598:CDS
GAAACTGTTCATCAAATGTT+TGG 0.338601 2.1:+26209462 MS.gene56598:CDS
AGAGGAATACTCATCAATAT+CGG 0.356690 2.1:+26206816 MS.gene56598:CDS
CCAATATGTCGTCGACTACT+TGG 0.375193 2.1:-26210094 None:intergenic
CAACCCCTATTTCACCAAAT+AGG 0.381053 2.1:+26208102 MS.gene56598:CDS
TCAATGATATCCCTCAATTT+CGG 0.393056 2.1:-26210215 None:intergenic
CCAAGTAGTCGACGACATAT+TGG 0.395171 2.1:+26210094 MS.gene56598:CDS
TTTGGTGAAATAGGGGTTGC+TGG 0.395241 2.1:-26208098 None:intergenic
TGGAGCGGTCAGGTTACCTT+TGG 0.414371 2.1:-26210168 None:intergenic
AATTCTAAAGGGTGTGGAAA+TGG 0.428535 2.1:+26206767 MS.gene56598:CDS
GAGTCTGAATTTAGCGAGAT+TGG 0.432083 2.1:+26210236 MS.gene56598:CDS
GCAATTAAAGACCTTGCAAA+AGG 0.452757 2.1:+26208056 MS.gene56598:CDS
TCAGCTGCAGATATTAAAAC+TGG 0.453325 2.1:-26208660 None:intergenic
TATGCTAAGGTGAATTCTAA+AGG 0.455161 2.1:+26206755 MS.gene56598:CDS
TTTCACACTGGCAGCAATCA+AGG 0.458122 2.1:-26209991 None:intergenic
ACCGAGAAAATGTTCGAATA+CGG 0.464949 2.1:+26210050 MS.gene56598:CDS
TTGGCGAGGTCCGTGCCAGC+AGG 0.477676 2.1:-26210149 None:intergenic
TGGAGAAAGAACCGAAATTG+AGG 0.478658 2.1:+26210204 MS.gene56598:CDS
GAGCAACTTGGAAAGCCTGC+TGG 0.484511 2.1:+26210134 MS.gene56598:CDS
ACTTGGAAAGCCTGCTGGCA+CGG 0.485083 2.1:+26210139 MS.gene56598:CDS
ATCAAGTTGGTCAAGAGTTG+TGG 0.492995 2.1:+26210275 MS.gene56598:CDS
TTGATTGCTGCCAGTGTGAA+AGG 0.493597 2.1:+26209993 MS.gene56598:CDS
ACAAGAGTGGCAGTGCTGGC+TGG 0.494391 2.1:+26209486 MS.gene56598:CDS
ACGCAATCGGCAGAGCAACT+TGG 0.497280 2.1:+26210122 MS.gene56598:CDS
TTCGAATACGGGAAGAATCT+CGG 0.498347 2.1:+26210062 MS.gene56598:CDS
ATGAATCATTTCAACTATCT+CGG 0.499817 2.1:-26208934 None:intergenic
ATGCTAAGGTGAATTCTAAA+GGG 0.500417 2.1:+26206756 MS.gene56598:CDS
TGGAACAAGAGTGGCAGTGC+TGG 0.503897 2.1:+26209482 MS.gene56598:CDS
ATTGAGTGTTTGAAGATCAT+CGG 0.505570 2.1:-26208141 None:intergenic
GGAGAAAGAACCGAAATTGA+GGG 0.507533 2.1:+26210205 MS.gene56598:CDS
AATTGGTTTGTTGTAAGAAG+AGG 0.509786 2.1:+26206798 MS.gene56598:CDS
CATATTGGATTTCACGCAAT+CGG 0.510526 2.1:+26210109 MS.gene56598:CDS
TCTTTAGTGCTGGTGGGAAG+AGG 0.511599 2.1:+26208688 MS.gene56598:CDS
ACTGCAGAGCCTACTTTGAA+TGG 0.516676 2.1:+26206854 MS.gene56598:CDS
TCATGTTTGCACAATCATCA+TGG 0.521316 2.1:+26209514 MS.gene56598:CDS
ATGCCTATGAAAAGAAGCAT+TGG 0.522548 2.1:-26206720 None:intergenic
GGATGCTCTTGATAGATTGT+AGG 0.526067 2.1:+26208627 MS.gene56598:intron
CCGAGAAAATGTTCGAATAC+GGG 0.527115 2.1:+26210051 MS.gene56598:CDS
GAGGAATACTCATCAATATC+GGG 0.528363 2.1:+26206817 MS.gene56598:CDS
AGTCATTAAACTTATCAGCC+AGG 0.539916 2.1:+26209563 MS.gene56598:CDS
CAACCTATTTGGTGAAATAG+GGG 0.541722 2.1:-26208105 None:intergenic
AAGGTGAATTCTAAAGGGTG+TGG 0.545230 2.1:+26206761 MS.gene56598:CDS
TCAAGTTGGTCAAGAGTTGT+GGG 0.546195 2.1:+26210276 MS.gene56598:CDS
GACACCAAGAACACAAGAGC+TGG 0.548114 2.1:-26208717 None:intergenic
GCTGAGCAGATCTTTAGTGC+TGG 0.564731 2.1:+26208678 MS.gene56598:CDS
GAGCAGATCTTTAGTGCTGG+TGG 0.569958 2.1:+26208681 MS.gene56598:CDS
TCGTTTAGCTCTTGAGGACA+TGG 0.571941 2.1:+26210382 MS.gene56598:CDS
AGCAGATCTTTAGTGCTGGT+GGG 0.574274 2.1:+26208682 MS.gene56598:CDS
GATGAGAGTGACCTAAGAAG+AGG 0.576816 2.1:+26208987 MS.gene56598:CDS
AATCGAACGAGCACAAGAGT+TGG 0.579042 2.1:+26210301 MS.gene56598:CDS
TGTGTATCGTTTAGCTCTTG+AGG 0.580344 2.1:+26210376 MS.gene56598:CDS
TGGTGACATATAATCTTCAA+AGG 0.582035 2.1:+26210402 MS.gene56598:CDS
GCTGGCACGGACCTCGCCAA+AGG 0.585708 2.1:+26210152 MS.gene56598:CDS
TGAAGTTAAGAATTATGCTA+AGG 0.586221 2.1:+26206742 MS.gene56598:CDS
CGGTCAGGTTACCTTTGGCG+AGG 0.592711 2.1:-26210163 None:intergenic
TCTTGATGAAGCGATCAAGT+TGG 0.602092 2.1:+26210262 MS.gene56598:CDS
TCAAATGTTTGGAACAAGAG+TGG 0.606800 2.1:+26209473 MS.gene56598:CDS
AGAGCGACCGCAGAACTACA+TGG 0.608016 2.1:+26208741 MS.gene56598:CDS
ATCACTGTACCATTCAAAGT+AGG 0.612430 2.1:-26206863 None:intergenic
TATGTCGTCGACTACTTGGA+AGG 0.615085 2.1:-26210090 None:intergenic
CTCAAGGCCATGTAGTTCTG+CGG 0.632644 2.1:-26208748 None:intergenic
GCTAAACGATACACACTAGG+AGG 0.638041 2.1:-26210368 None:intergenic
AACTGCCGCTCCTTTCACAC+TGG 0.639921 2.1:-26210003 None:intergenic
AGAGCTAAACGATACACACT+AGG 0.642583 2.1:-26210371 None:intergenic
AAGTTGGTCAAGAGTTGTGG+GGG 0.644966 2.1:+26210278 MS.gene56598:CDS
CAAGTTGGTCAAGAGTTGTG+GGG 0.662378 2.1:+26210277 MS.gene56598:CDS
CACACTGGCAGCAATCAAGG+AGG 0.699964 2.1:-26209988 None:intergenic
TGCTGCCAGTGTGAAAGGAG+CGG 0.704894 2.1:+26209998 MS.gene56598:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGAAAAAATCATTATTT+CGG + chr2.1:26209775-26209794 MS.gene56598:intron 10.0%
!!! TTTTATTTTTGCAAAATTTT+TGG + chr2.1:26209852-26209871 MS.gene56598:intron 10.0%
!!! TTTTTCTTTCAAATTATTAT+CGG + chr2.1:26207894-26207913 MS.gene56598:intron 10.0%
!! TAAAAACAATGTTTAGAAAA+TGG - chr2.1:26209837-26209856 None:intergenic 15.0%
!! TGATCAAATAAATTATAACA+TGG - chr2.1:26209150-26209169 None:intergenic 15.0%
!! AACTTTGACATTAAAAGATT+TGG + chr2.1:26208012-26208031 MS.gene56598:intron 20.0%
!! AAGTAATTGATATCCATTTA+AGG - chr2.1:26209712-26209731 None:intergenic 20.0%
!! AATATGAAAGAACATATGTT+AGG + chr2.1:26209675-26209694 MS.gene56598:intron 20.0%
!! AGTAATTGATATCCATTTAA+GGG - chr2.1:26209711-26209730 None:intergenic 20.0%
!! ATATGTTAATTTAACTGATG+AGG + chr2.1:26208606-26208625 MS.gene56598:intron 20.0%
!! CATCAGTTAAATTAACATAT+AGG - chr2.1:26208606-26208625 None:intergenic 20.0%
!! TGGTATATACATTCATAAAA+AGG + chr2.1:26209314-26209333 MS.gene56598:intron 20.0%
!!! AGATATTAAAACTGGATTTT+CGG - chr2.1:26208655-26208674 None:intergenic 20.0%
!!! AGTATGACAAAAATTGATTT+AGG - chr2.1:26209101-26209120 None:intergenic 20.0%
!!! CTAACTTGTTTTGAATTAAT+AGG + chr2.1:26209435-26209454 MS.gene56598:intron 20.0%
!!! GTATGACAAAAATTGATTTA+GGG - chr2.1:26209100-26209119 None:intergenic 20.0%
!!! TAAGCAAAAATCAACTTTTT+AGG - chr2.1:26207265-26207284 None:intergenic 20.0%
!!! TCAATTTTTGTCATACTTTA+CGG + chr2.1:26209104-26209123 MS.gene56598:intron 20.0%
!!! TGATTTTTTTGGTAAAAACT+TGG + chr2.1:26206679-26206698 MS.gene56598:CDS 20.0%
!!! TTGTTTTGAATTAATAGGAA+AGG + chr2.1:26209440-26209459 MS.gene56598:intron 20.0%
! AAGCTAGTGATATTTAGAAA+TGG + chr2.1:26209011-26209030 MS.gene56598:intron 25.0%
! AATGGATATCAATTACTTCA+AGG + chr2.1:26209714-26209733 MS.gene56598:intron 25.0%
! AATTGAATGTTACATGTGTT+TGG - chr2.1:26207864-26207883 None:intergenic 25.0%
! ATATGTTCTTTCATATTCAC+CGG - chr2.1:26209672-26209691 None:intergenic 25.0%
! ATCTTGAAATGAATGATTTC+AGG + chr2.1:26208883-26208902 MS.gene56598:intron 25.0%
! ATGAATCATTTCAACTATCT+CGG - chr2.1:26208937-26208956 None:intergenic 25.0%
! ATGGATATCAATTACTTCAA+GGG + chr2.1:26209715-26209734 MS.gene56598:intron 25.0%
! ATGTATATACCAATTTGTCA+AGG - chr2.1:26209306-26209325 None:intergenic 25.0%
! CACTCATTAAATGATGTATT+TGG - chr2.1:26207240-26207259 None:intergenic 25.0%
! CCAAATTAAAACAAAGTTTC+AGG - chr2.1:26209202-26209221 None:intergenic 25.0%
! GTAATTGATATCCATTTAAG+GGG - chr2.1:26209710-26209729 None:intergenic 25.0%
! TAAGCAAAAATCAACTTTCT+AGG + chr2.1:26207183-26207202 MS.gene56598:intron 25.0%
! TAGATGGAAAAGAAAAAACA+AGG - chr2.1:26209371-26209390 None:intergenic 25.0%
! TCCTGAAAATTCTATGTATT+TGG + chr2.1:26208839-26208858 MS.gene56598:intron 25.0%
! TCTGACAATTCTAATATTGT+CGG - chr2.1:26207493-26207512 None:intergenic 25.0%
! TCTTGAAATGAATGATTTCA+GGG + chr2.1:26208884-26208903 MS.gene56598:intron 25.0%
! TGAAGTTAAGAATTATGCTA+AGG + chr2.1:26206742-26206761 MS.gene56598:CDS 25.0%
! TGTGATATACAATTTAGTAC+AGG - chr2.1:26208439-26208458 None:intergenic 25.0%
!! ATTGTTCAGTGATTTTAAAC+AGG + chr2.1:26208321-26208340 MS.gene56598:intron 25.0%
!! GTTTAAAATCACTGAACAAT+GGG - chr2.1:26208321-26208340 None:intergenic 25.0%
!! TAATAATTTGAAGTGTGTTG+TGG + chr2.1:26206903-26206922 MS.gene56598:intron 25.0%
!! TAATGACTTCAATGTTTTCA+AGG - chr2.1:26209551-26209570 None:intergenic 25.0%
!! TGACATTAAAAGATTTGGTT+TGG + chr2.1:26208017-26208036 MS.gene56598:intron 25.0%
!! TGTTTAAAATCACTGAACAA+TGG - chr2.1:26208322-26208341 None:intergenic 25.0%
!! TTCATTTTGTATGTACTATG+TGG + chr2.1:26207063-26207082 MS.gene56598:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr2.1:26207275-26207294 MS.gene56598:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+TGG - chr2.1:26207294-26207275 None:intergenic 25.0%
!!! AGCAAAAGCATTGATTTTTT+TGG + chr2.1:26206668-26206687 MS.gene56598:CDS 25.0%
!!! ATTTGGTTTGGTTTTTGAAT+AGG + chr2.1:26208029-26208048 MS.gene56598:intron 25.0%
!!! CCTGAAACTTTGTTTTAATT+TGG + chr2.1:26209199-26209218 MS.gene56598:intron 25.0%
ACAATATCTGTCAATTCTGT+TGG - chr2.1:26207835-26207854 None:intergenic 30.0%
ACATTCATAAAAAGGCTTCA+AGG + chr2.1:26209322-26209341 MS.gene56598:intron 30.0%
ACTACTTCAAACAACCTATT+TGG - chr2.1:26208119-26208138 None:intergenic 30.0%
AGAGGAATACTCATCAATAT+CGG + chr2.1:26206816-26206835 MS.gene56598:CDS 30.0%
ATCAATTACTTCAAGGGATT+GGG + chr2.1:26209721-26209740 MS.gene56598:intron 30.0%
ATGCTAAGGTGAATTCTAAA+GGG + chr2.1:26206756-26206775 MS.gene56598:CDS 30.0%
ATTGAGTGTTTGAAGATCAT+CGG - chr2.1:26208144-26208163 None:intergenic 30.0%
CTTTCAAATTATTATCGGTC+TGG + chr2.1:26207899-26207918 MS.gene56598:intron 30.0%
GAAACTGTTCATCAAATGTT+TGG + chr2.1:26209462-26209481 MS.gene56598:CDS 30.0%
GAAAGAACATATGTTAGGAT+AGG + chr2.1:26209680-26209699 MS.gene56598:intron 30.0%
GAATTGTCAGATATTGTTGA+AGG + chr2.1:26207618-26207637 MS.gene56598:intron 30.0%
GACACAATTATAAGCAACTA+AGG - chr2.1:26208231-26208250 None:intergenic 30.0%
GAGATTTGTATACTTACTCA+AGG - chr2.1:26208767-26208786 None:intergenic 30.0%
GATTGAATGTTACATATGTC+TGG - chr2.1:26207644-26207663 None:intergenic 30.0%
GTATCAGAATTATCTGATAC+CGG + chr2.1:26207009-26207028 MS.gene56598:intron 30.0%
TATCAATTACTTCAAGGGAT+TGG + chr2.1:26209720-26209739 MS.gene56598:intron 30.0%
TATGCTAAGGTGAATTCTAA+AGG + chr2.1:26206755-26206774 MS.gene56598:CDS 30.0%
TATGTATCACCTTGACAAAT+TGG + chr2.1:26209294-26209313 MS.gene56598:intron 30.0%
TATGTTCTTTCATATTCACC+GGG - chr2.1:26209671-26209690 None:intergenic 30.0%
TCAATGATATCCCTCAATTT+CGG - chr2.1:26210218-26210237 None:intergenic 30.0%
TGATTGATGTTACATATGTC+TGG - chr2.1:26207528-26207547 None:intergenic 30.0%
TGGTGACATATAATCTTCAA+AGG + chr2.1:26210402-26210421 MS.gene56598:CDS 30.0%
TTCTCCAATGCAAAAATTAC+TGG - chr2.1:26210191-26210210 None:intergenic 30.0%
TTGTATGAGTCATTACATGT+CGG + chr2.1:26209241-26209260 MS.gene56598:intron 30.0%
TTTCAAATTCTGCTATGCTA+TGG + chr2.1:26208474-26208493 MS.gene56598:intron 30.0%
TTTCTGCTTATGATCATGTT+TGG + chr2.1:26209063-26209082 MS.gene56598:intron 30.0%
! AACAACCTATTTGGTGAAAT+AGG - chr2.1:26208110-26208129 None:intergenic 30.0%
! ACAACCTATTTGGTGAAATA+GGG - chr2.1:26208109-26208128 None:intergenic 30.0%
! GCCAAATACATAGAATTTTC+AGG - chr2.1:26208843-26208862 None:intergenic 30.0%
! GTATCTTATTGAAAGTGTGT+CGG + chr2.1:26206976-26206995 MS.gene56598:intron 30.0%
! GTGATTAAAGATTTTGCTAG+TGG + chr2.1:26209885-26209904 MS.gene56598:CDS 30.0%
! TATCTTATTGAAAGTGTGTC+GGG + chr2.1:26206977-26206996 MS.gene56598:intron 30.0%
! TTCATTTTGTACGTACTATG+TGG + chr2.1:26207666-26207685 MS.gene56598:intron 30.0%
! TTTTCAACGTTGTATGATGA+TGG - chr2.1:26209595-26209614 None:intergenic 30.0%
!! AATTGGTTTGTTGTAAGAAG+AGG + chr2.1:26206798-26206817 MS.gene56598:CDS 30.0%
!!! GTTCGTATTGATTTTAGAAG+TGG + chr2.1:26207989-26208008 MS.gene56598:intron 30.0%
AATACTCAAACAGACAAGAC+AGG - chr2.1:26208253-26208272 None:intergenic 35.0%
ACCGAGAAAATGTTCGAATA+CGG + chr2.1:26210050-26210069 MS.gene56598:CDS 35.0%
AGAAAAGCTGAAAAGCAAGA+AGG - chr2.1:26208549-26208568 None:intergenic 35.0%
AGTCATTAAACTTATCAGCC+AGG + chr2.1:26209563-26209582 MS.gene56598:CDS 35.0%
ATCACTGTACCATTCAAAGT+AGG - chr2.1:26206866-26206885 None:intergenic 35.0%
CAATGCAAAAATTACTGGAG+CGG - chr2.1:26210186-26210205 None:intergenic 35.0%
CATATTGGATTTCACGCAAT+CGG + chr2.1:26210109-26210128 MS.gene56598:CDS 35.0%
GAATTGTCAGATATTGTCGA+AGG + chr2.1:26207132-26207151 MS.gene56598:intron 35.0%
GACTGAATGAAACATGTGTA+TGG - chr2.1:26207041-26207060 None:intergenic 35.0%
GAGGAATACTCATCAATATC+GGG + chr2.1:26206817-26206836 MS.gene56598:CDS 35.0%
GCAATTAAAGACCTTGCAAA+AGG + chr2.1:26208056-26208075 MS.gene56598:CDS 35.0%
GGTAAAAACTTGGTTTCTTG+TGG + chr2.1:26206689-26206708 MS.gene56598:CDS 35.0%
TCAATATCGGGTTTCTTCTA+TGG + chr2.1:26206829-26206848 MS.gene56598:CDS 35.0%
TCAGCTGCAGATATTAAAAC+TGG - chr2.1:26208663-26208682 None:intergenic 35.0%
TCATGTTTGCACAATCATCA+TGG + chr2.1:26209514-26209533 MS.gene56598:CDS 35.0%
TGATTGAATGTTACACGTGT+TGG - chr2.1:26207412-26207431 None:intergenic 35.0%
TGCTTATAATAGTGACTGGA+GGG - chr2.1:26207169-26207188 None:intergenic 35.0%
TTGCTTATAATAGTGACTGG+AGG - chr2.1:26207170-26207189 None:intergenic 35.0%
! AATTCTAAAGGGTGTGGAAA+TGG + chr2.1:26206767-26206786 MS.gene56598:CDS 35.0%
! AGTGTAGCGGAATTCAAAAA+TGG - chr2.1:26208377-26208396 None:intergenic 35.0%
! ATGCCTATGAAAAGAAGCAT+TGG - chr2.1:26206723-26206742 None:intergenic 35.0%
! CAACCTATTTGGTGAAATAG+GGG - chr2.1:26208108-26208127 None:intergenic 35.0%
! CTTCCAATGCTTCTTTTCAT+AGG + chr2.1:26206717-26206736 MS.gene56598:CDS 35.0%
! TCAAATGTTTGGAACAAGAG+TGG + chr2.1:26209473-26209492 MS.gene56598:CDS 35.0%
! TCAAGTTCAATCCTTTTGCA+AGG - chr2.1:26208070-26208089 None:intergenic 35.0%
! TTCATTTTGTACGTGCTATG+TGG + chr2.1:26207549-26207568 MS.gene56598:intron 35.0%
!! GACTTCAATGTTTTCAAGGT+TGG - chr2.1:26209547-26209566 None:intergenic 35.0%
!! TGTAGTACTGATACTTCTGA+TGG + chr2.1:26207081-26207100 MS.gene56598:intron 35.0%
!! TGTGGTACTGATACTTCTAA+TGG + chr2.1:26207684-26207703 MS.gene56598:intron 35.0%
!!! CAAAATTTTTGGTGTGTGAC+AGG + chr2.1:26209863-26209882 MS.gene56598:intron 35.0%
!!! TGGTTTGGTTTTTGAATAGG+TGG + chr2.1:26208032-26208051 MS.gene56598:intron 35.0%
AAAGTGTGTCTGGTGTCTAA+CGG + chr2.1:26207104-26207123 MS.gene56598:intron 40.0%
ACCACATCGAGTTTGAATAG+AGG - chr2.1:26209413-26209432 None:intergenic 40.0%
ACTATAGCGCTATAGTGTAG+CGG - chr2.1:26208390-26208409 None:intergenic 40.0%
AGAGCTAAACGATACACACT+AGG - chr2.1:26210374-26210393 None:intergenic 40.0%
CAACCCCTATTTCACCAAAT+AGG + chr2.1:26208102-26208121 MS.gene56598:CDS 40.0%
CCGAGAAAATGTTCGAATAC+GGG + chr2.1:26210051-26210070 MS.gene56598:CDS 40.0%
CGAGTTTGAATAGAGGCAAA+TGG - chr2.1:26209406-26209425 None:intergenic 40.0%
GAGTCTGAATTTAGCGAGAT+TGG + chr2.1:26210236-26210255 MS.gene56598:CDS 40.0%
GGAGAAAGAACCGAAATTGA+GGG + chr2.1:26210205-26210224 MS.gene56598:CDS 40.0%
GGATGCTCTTGATAGATTGT+AGG + chr2.1:26208627-26208646 MS.gene56598:intron 40.0%
TACTGATACTTCTGAGTGTC+TGG + chr2.1:26207806-26207825 MS.gene56598:intron 40.0%
TAGCTGCTATTGGACAATAC+TGG + chr2.1:26208502-26208521 MS.gene56598:intron 40.0%
TCCTTTACACCTCACACATA+TGG + chr2.1:26209176-26209195 MS.gene56598:intron 40.0%
TCTTGATGAAGCGATCAAGT+TGG + chr2.1:26210262-26210281 MS.gene56598:CDS 40.0%
TGAATGTTACATACTCCCTC+CGG - chr2.1:26207297-26207316 None:intergenic 40.0%
TGCAGATGCAAGTGATGATA+AGG - chr2.1:26209621-26209640 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr2.1:26207279-26207298 MS.gene56598:intron 40.0%
TGGAAATGGAGCTCGTAAAT+TGG + chr2.1:26206781-26206800 MS.gene56598:CDS 40.0%
TGGAGAAAGAACCGAAATTG+AGG + chr2.1:26210204-26210223 MS.gene56598:CDS 40.0%
TTCGAATACGGGAAGAATCT+CGG + chr2.1:26210062-26210081 MS.gene56598:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr2.1:26207278-26207297 MS.gene56598:intron 40.0%
TTGTCAAATAGCCGCTATTG+CGG - chr2.1:26208414-26208433 None:intergenic 40.0%
! AAGGTGAATTCTAAAGGGTG+TGG + chr2.1:26206761-26206780 MS.gene56598:CDS 40.0%
! CCCGTATTCGAACATTTTCT+CGG - chr2.1:26210054-26210073 None:intergenic 40.0%
! CGCTCCAGTAATTTTTGCAT+TGG + chr2.1:26210184-26210203 MS.gene56598:CDS 40.0%
! CTTCTAATGGAAAGTGTGTC+TGG + chr2.1:26207697-26207716 MS.gene56598:intron 40.0%
! GGGTATCATTCACGTTTTTC+TGG - chr2.1:26208301-26208320 None:intergenic 40.0%
! TCACTAGCTTACCTCTTCTT+AGG - chr2.1:26209001-26209020 None:intergenic 40.0%
! TTCTTTTCCATCTACTCTGC+TGG + chr2.1:26209377-26209396 MS.gene56598:intron 40.0%
!! ATCAAGTTGGTCAAGAGTTG+TGG + chr2.1:26210275-26210294 MS.gene56598:CDS 40.0%
!! TCAAGTTGGTCAAGAGTTGT+GGG + chr2.1:26210276-26210295 MS.gene56598:CDS 40.0%
!! TGTGGTACTGATACTTCTGA+TGG + chr2.1:26207567-26207586 MS.gene56598:intron 40.0%
!! TGTGTATCGTTTAGCTCTTG+AGG + chr2.1:26210376-26210395 MS.gene56598:CDS 40.0%
AACATGTGTATGGAGTTCGC+CGG - chr2.1:26207031-26207050 None:intergenic 45.0%
AATCGAACGAGCACAAGAGT+TGG + chr2.1:26210301-26210320 MS.gene56598:CDS 45.0%
ACTGCAGAGCCTACTTTGAA+TGG + chr2.1:26206854-26206873 MS.gene56598:CDS 45.0%
AGTTTCAGGCCATATGTGTG+AGG - chr2.1:26209188-26209207 None:intergenic 45.0%
CAAAAATTACTGGAGCGGTC+AGG - chr2.1:26210181-26210200 None:intergenic 45.0%
CCAAGTAGTCGACGACATAT+TGG + chr2.1:26210094-26210113 MS.gene56598:CDS 45.0%
GATGAGAGTGACCTAAGAAG+AGG + chr2.1:26208987-26209006 MS.gene56598:CDS 45.0%
GCCATATGTGTGAGGTGTAA+AGG - chr2.1:26209180-26209199 None:intergenic 45.0%
GCCTCTATTCAAACTCGATG+TGG + chr2.1:26209409-26209428 MS.gene56598:intron 45.0%
GCTAAACGATACACACTAGG+AGG - chr2.1:26210371-26210390 None:intergenic 45.0%
GGATAGGTCAACCCCTTAAA+TGG + chr2.1:26209696-26209715 MS.gene56598:intron 45.0%
GGCTAAACGTCGATGCTTTA+CGG - chr2.1:26208916-26208935 None:intergenic 45.0%
TATGGCGCTATAGCTGCTAT+TGG + chr2.1:26208492-26208511 MS.gene56598:intron 45.0%
TCTTTCATATTCACCGGGCA+GGG - chr2.1:26209666-26209685 None:intergenic 45.0%
TTCTTTCATATTCACCGGGC+AGG - chr2.1:26209667-26209686 None:intergenic 45.0%
TTGATTGCTGCCAGTGTGAA+AGG + chr2.1:26209993-26210012 MS.gene56598:CDS 45.0%
TTTCACACTGGCAGCAATCA+AGG - chr2.1:26209994-26210013 None:intergenic 45.0%
TTTGGTGAAATAGGGGTTGC+TGG - chr2.1:26208101-26208120 None:intergenic 45.0%
! AAGTTGGTCAAGAGTTGTGG+GGG + chr2.1:26210278-26210297 MS.gene56598:CDS 45.0%
! ACTTGCGTGCAGGGTTATTT+TGG + chr2.1:26209750-26209769 MS.gene56598:intron 45.0%
! CCAATATGTCGTCGACTACT+TGG - chr2.1:26210097-26210116 None:intergenic 45.0%
! CTTCTGATCGAAAGTGTGTC+TGG + chr2.1:26207094-26207113 MS.gene56598:intron 45.0%
! CTTCTGATGGAAAGTGTGTC+TGG + chr2.1:26207464-26207483 MS.gene56598:intron 45.0%
! GACATGTAAGTGTGTCACTG+CGG + chr2.1:26207921-26207940 MS.gene56598:intron 45.0%
! TATGTCGTCGACTACTTGGA+AGG - chr2.1:26210093-26210112 None:intergenic 45.0%
!! AGCAGATCTTTAGTGCTGGT+GGG + chr2.1:26208682-26208701 MS.gene56598:CDS 45.0%
!! CAAGTTGGTCAAGAGTTGTG+GGG + chr2.1:26210277-26210296 MS.gene56598:CDS 45.0%
!! GTATGATGATGGAACTCACC+TGG - chr2.1:26209584-26209603 None:intergenic 45.0%
!! TCGTTTAGCTCTTGAGGACA+TGG + chr2.1:26210382-26210401 MS.gene56598:CDS 45.0%
AATAACCCTGCACGCAAGTG+TGG - chr2.1:26209749-26209768 None:intergenic 50.0%
ATGGAGACCAGCAGAGTAGA+TGG - chr2.1:26209387-26209406 None:intergenic 50.0%
GAAAAGCAAGAAGGCTCAGC+AGG - chr2.1:26208540-26208559 None:intergenic 50.0%
GACACCAAGAACACAAGAGC+TGG - chr2.1:26208720-26208739 None:intergenic 50.0%
GAGACCAGCTCTTGTGTTCT+TGG + chr2.1:26208713-26208732 MS.gene56598:CDS 50.0%
GCGCTATAGTACCGCAATAG+CGG + chr2.1:26208400-26208419 MS.gene56598:intron 50.0%
GCTGAGCAGATCTTTAGTGC+TGG + chr2.1:26208678-26208697 MS.gene56598:CDS 50.0%
TTCCAAGATTCAACCCTGCC+CGG + chr2.1:26209650-26209669 MS.gene56598:intron 50.0%
! AAAGGAGCGGCAGTTTTCAG+CGG + chr2.1:26210011-26210030 MS.gene56598:CDS 50.0%
! CTCAAGGCCATGTAGTTCTG+CGG - chr2.1:26208751-26208770 None:intergenic 50.0%
! GAGCAGATCTTTAGTGCTGG+TGG + chr2.1:26208681-26208700 MS.gene56598:CDS 50.0%
!! TCTTTAGTGCTGGTGGGAAG+AGG + chr2.1:26208688-26208707 MS.gene56598:CDS 50.0%
AACTGCCGCTCCTTTCACAC+TGG - chr2.1:26210006-26210025 None:intergenic 55.0%
ACGCAATCGGCAGAGCAACT+TGG + chr2.1:26210122-26210141 MS.gene56598:CDS 55.0%
ACTTGGAAAGCCTGCTGGCA+CGG + chr2.1:26210139-26210158 MS.gene56598:CDS 55.0%
AGAGCGACCGCAGAACTACA+TGG + chr2.1:26208741-26208760 MS.gene56598:CDS 55.0%
CACACTGGCAGCAATCAAGG+AGG - chr2.1:26209991-26210010 None:intergenic 55.0%
GAGCAACTTGGAAAGCCTGC+TGG + chr2.1:26210134-26210153 MS.gene56598:CDS 55.0%
TGCTGCCAGTGTGAAAGGAG+CGG + chr2.1:26209998-26210017 MS.gene56598:CDS 55.0%
TGGAACAAGAGTGGCAGTGC+TGG + chr2.1:26209482-26209501 MS.gene56598:CDS 55.0%
TGGAGCGGTCAGGTTACCTT+TGG - chr2.1:26210171-26210190 None:intergenic 55.0%
! GTGACTGGAGGGAGTATGTC+TGG - chr2.1:26207158-26207177 None:intergenic 55.0%
CACCGGGCAGGGTTGAATCT+TGG - chr2.1:26209655-26209674 None:intergenic 60.0%
CGGTCAGGTTACCTTTGGCG+AGG - chr2.1:26210166-26210185 None:intergenic 60.0%
!! ACAAGAGTGGCAGTGCTGGC+TGG + chr2.1:26209486-26209505 MS.gene56598:CDS 60.0%
GGGCTCCACACTTGCGTGCA+GGG + chr2.1:26209741-26209760 MS.gene56598:intron 65.0%
TGGGCTCCACACTTGCGTGC+AGG + chr2.1:26209740-26209759 MS.gene56598:intron 65.0%
GCTGGCACGGACCTCGCCAA+AGG + chr2.1:26210152-26210171 MS.gene56598:CDS 70.0%
TTGGCGAGGTCCGTGCCAGC+AGG - chr2.1:26210152-26210171 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 26206653 26210433 26206653 ID=MS.gene56598
chr2.1 mRNA 26206653 26210433 26206653 ID=MS.gene56598.t1;Parent=MS.gene56598
chr2.1 exon 26206653 26206875 26206653 ID=MS.gene56598.t1.exon1;Parent=MS.gene56598.t1
chr2.1 CDS 26206653 26206875 26206653 ID=cds.MS.gene56598.t1;Parent=MS.gene56598.t1
chr2.1 exon 26208051 26208178 26208051 ID=MS.gene56598.t1.exon2;Parent=MS.gene56598.t1
chr2.1 CDS 26208051 26208178 26208051 ID=cds.MS.gene56598.t1;Parent=MS.gene56598.t1
chr2.1 exon 26208642 26208769 26208642 ID=MS.gene56598.t1.exon3;Parent=MS.gene56598.t1
chr2.1 CDS 26208642 26208769 26208642 ID=cds.MS.gene56598.t1;Parent=MS.gene56598.t1
chr2.1 exon 26208905 26209008 26208905 ID=MS.gene56598.t1.exon4;Parent=MS.gene56598.t1
chr2.1 CDS 26208905 26209008 26208905 ID=cds.MS.gene56598.t1;Parent=MS.gene56598.t1
chr2.1 exon 26209457 26209584 26209457 ID=MS.gene56598.t1.exon5;Parent=MS.gene56598.t1
chr2.1 CDS 26209457 26209584 26209457 ID=cds.MS.gene56598.t1;Parent=MS.gene56598.t1
chr2.1 exon 26209885 26210433 26209885 ID=MS.gene56598.t1.exon6;Parent=MS.gene56598.t1
chr2.1 CDS 26209885 26210433 26209885 ID=cds.MS.gene56598.t1;Parent=MS.gene56598.t1
Gene Sequence

>MS.gene56598

ATGATGTCTGTCACTAGCAAAAGCATTGATTTTTTTGGTAAAAACTTGGTTTCTTGTGGCTGTTCTTCCAATGCTTCTTTTCATAGGCATGAAGTTAAGAATTATGCTAAGGTGAATTCTAAAGGGTGTGGAAATGGAGCTCGTAAATTGGTTTGTTGTAAGAAGAGGAATACTCATCAATATCGGGTTTCTTCTATGGATACTGCAGAGCCTACTTTGAATGGTACAGTGATATTTTATTTTATTTTTTTAATAATTTGAAGTGTGTTGTGGAGTTACTTCATGTTACTAGTTTGCATGAATGATTTTGTCTGTACTACGTAGTATCTTATTGAAAGTGTGTCGGGTGTTCGTCAGTATCAGAATTATCTGATACCGGCGAACTCCATACACATGTTTCATTCAGTCATTTCATTTTGTATGTACTATGTAGTACTGATACTTCTGATCGAAAGTGTGTCTGGTGTCTAACGGTATCAGAATTGTCAGATATTGTCGAAGGCCAGACATACTCCCTCCAGTCACTATTATAAGCAAAAATCAACTTTCTAGGCATTAAATGATGTATCTAGTCTATATATTGACCAAATACATCATTTAATGAGTGAACCTAAAAAGTTGATTTTTGCTTATAATAGTGACCGGAGGGAGTATGTAACATTCAATCATTTCATTTTGTATGTACTATGTAGTACTGATACTTCTGATCGAAAGTGTGTCTGGTGTCTGACAGTATCAGAATTGTTCTCTCAAACGCCAACACGTGTAACATTCAATCATTTCATTTTGCATGTACTATGTAGTACTGATACTTCTGATGGAAAGTGTGTCTGGTTTCCGACAATATTAGAATTGTCAGATATTGTCGAAGGCCAGACATATGTAACATCAATCATTTCATTTTGTACGTGCTATGTGGTACTGATACTTCTGATGGAAAGTGTGTCTGGTGTCCGACAATATTAGAATTGTCAGATATTGTTGAAGGCCAGACATATGTAACATTCAATCATTTCATTTTGTACGTACTATGTGGTACTGATACTTCTAATGGAAAGTGTGTCTGGTGTCCGACAATATTAGAATTGTCAGATATTGTCGAACGTCAGACATATGTAACATTCAATCATTTCATTTTGTATGTACTATGTGGTACTGATACTTCTGAGTGTCTGGTGTCCAACAGAATTGACAGATATTGTTGAACACCAAACACATGTAACATTCAATTATTTCATTTTTTTTTCTTTCAAATTATTATCGGTCTGGACATGTAAGTGTGTCACTGCGGTGTGAGTATTTGTGTCAGTGTTTTATAGCGAATGAAGTAATATATGTTCGTATTGATTTTAGAAGTGGAACTTTGACATTAAAAGATTTGGTTTGGTTTTTGAATAGGTGGAGCAATTAAAGACCTTGCAAAAGGATTGAACTTGAAGAGTTATCCAGCAACCCCTATTTCACCAAATAGGTTGTTTGAAGTAGTCTCCGATGATCTTCAAACACTCAATAAAAATCTTCAGTCTGTAAGTATTGCTTTCTATATTCATTTTGTTTGTTGTTTTTTACTATCTGCCTTAGTTGCTTATAATTGTGTCCTGTCTTGTCTGTTTGAGTATTTCTTTGTTCTATTGACTTCAACAGACCAGAAAAACGTGAATGATACCCATTGTTCAGTGATTTTAAACAGGACATTCTTTGCTTATTGTTCTTTTAATTATCCATTTTTGAATTCCGCTACACTATAGCGCTATAGTACCGCAATAGCGGCTATTTGACAACACCTGTACTAAATTGTATATCACAAAACAATATTGATTTTTTCAAATTCTGCTATGCTATGGCGCTATAGCTGCTATTGGACAATACTGGTCATTCTTATTGCCTGCTGAGCCTTCTTGCTTTTCAGCTTTTCTTACACTGCAAACAGTAATGATTAGATTTTTGTTGCCTATATGTTAATTTAACTGATGAGGATGCTCTTGATAGATTGTAGGTGCCGAAAATCCAGTTTTAATATCTGCAGCTGAGCAGATCTTTAGTGCTGGTGGGAAGAGGATGAGACCAGCTCTTGTGTTCTTGGTGTCAAGAGCGACCGCAGAACTACATGGCCTTGAGTAAGTATACAAATCTCTCTTTATCTCTCTTACATGCGCGCGCACACGCAAAGAGTAGTCATTTGCTTGTCCTGAAAATTCTATGTATTTGGCTATAAAAAATTGAAAGCTTCATCTTGAAATGAATGATTTCAGGGATCTTACCGTAAAGCATCGACGTTTAGCCGAGATAGTTGAAATGATTCATACTGCAAGTTTGATACATGATGATGTGTTAGATGAGAGTGACCTAAGAAGAGGTAAGCTAGTGATATTTAGAAATGGCTGTTTAATGTTCTTGACATTACTTTATTTTTCTGCTTATGATCATGTTTGGCAACGTGCATGCCCTAAATCAATTTTTGTCATACTTTACGGTCGTTTTGATTTTAATCTTACCATGTTATAATTTATTTGATCAAGAATTTCCTTTACACCTCACACATATGGCCTGAAACTTTGTTTTAATTTGGAATTAAACATTATTGCTCGTTGTATGAGTCATTACATGTCGGTGTTAAGTACAAGTCTAAAGATACATCTGCTATGTATCACCTTGACAAATTGGTATATACATTCATAAAAAGGCTTCAAGGTTTCAAACTGTGACATTTGATTTCCTTGTTTTTTCTTTTCCATCTACTCTGCTGGTCTCCATTTGCCTCTATTCAAACTCGATGTGGTTGCTAACTTGTTTTGAATTAATAGGAAAGGAAACTGTTCATCAAATGTTTGGAACAAGAGTGGCAGTGCTGGCTGGAGACTTCATGTTTGCACAATCATCATGGTATCTCGCCAACCTTGAAAACATTGAAGTCATTAAACTTATCAGCCAGGTGAGTTCCATCATCATACAACGTTGAAAATATCCTTATCATCACTTGCATCTGCAAAATCATCATTCCAAGATTCAACCCTGCCCGGTGAATATGAAAGAACATATGTTAGGATAGGTCAACCCCTTAAATGGATATCAATTACTTCAAGGGATTGGGCTCCACACTTGCGTGCAGGGTTATTTTGGTCTAATGAAAAAATCATTATTTCGGAAGTGCTTAGCATAGTGTATGAAAAGATGCATTAGTCCATTTTCTAAACATTGTTTTTATTTTTGCAAAATTTTTGGTGTGTGACAGGTGATTAAAGATTTTGCTAGTGGAGAAATAAAGCAAGCTTCTAGCTTGTTTGATTGTGATGTTCAGCTCGACGAGTATCTAATCAAGAGTTATTTTAAGACAGCCTCCTTGATTGCTGCCAGTGTGAAAGGAGCGGCAGTTTTCAGCGGTTCTGACAGCAGCATGACCGAGAAAATGTTCGAATACGGGAAGAATCTCGGTCTCTCCTTCCAAGTAGTCGACGACATATTGGATTTCACGCAATCGGCAGAGCAACTTGGAAAGCCTGCTGGCACGGACCTCGCCAAAGGTAACCTGACCGCTCCAGTAATTTTTGCATTGGAGAAAGAACCGAAATTGAGGGATATCATTGAGTCTGAATTTAGCGAGATTGGTTCTCTTGATGAAGCGATCAAGTTGGTCAAGAGTTGTGGGGGAATCGAACGAGCACAAGAGTTGGCAAAAGAGAAAGCTGATCTTGCTATTCAAAGTCTTCAATGTCTTCCTCCTAGTGTGTATCGTTTAGCTCTTGAGGACATGGTGACATATAATCTTCAAAGGATTGCATAA

Protein sequence

>MS.gene56598.t1

MMSVTSKSIDFFGKNLVSCGCSSNASFHRHEVKNYAKVNSKGCGNGARKLVCCKKRNTHQYRVSSMDTAEPTLNGGAIKDLAKGLNLKSYPATPISPNRLFEVVSDDLQTLNKNLQSIVGAENPVLISAAEQIFSAGGKRMRPALVFLVSRATAELHGLEDLTVKHRRLAEIVEMIHTASLIHDDVLDESDLRRGKETVHQMFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIKQASSLFDCDVQLDEYLIKSYFKTASLIAASVKGAAVFSGSDSSMTEKMFEYGKNLGLSFQVVDDILDFTQSAEQLGKPAGTDLAKGNLTAPVIFALEKEPKLRDIIESEFSEIGSLDEAIKLVKSCGGIERAQELAKEKADLAIQSLQCLPPSVYRLALEDMVTYNLQRIA