Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040109.t1 | XP_003631124.2 | 98.2 | 494 | 8 | 1 | 1 | 493 | 1 | 494 | 9.10E-285 | 988.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040109.t1 | Q9M571 | 72.7 | 494 | 134 | 1 | 1 | 493 | 1 | 494 | 1.6e-221 | 770.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040109.t1 | G7LE68 | 98.2 | 494 | 8 | 1 | 1 | 493 | 1 | 494 | 6.6e-285 | 988.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene040109 | MS.gene042859 | PPI |
| MS.gene047043 | MS.gene040109 | PPI |
| MS.gene040109 | MS.gene066974 | PPI |
| MS.gene93748 | MS.gene040109 | PPI |
| MS.gene047006 | MS.gene040109 | PPI |
| MS.gene82097 | MS.gene040109 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040109.t1 | MTR_8g107370 | 98.178 | 494 | 8 | 1 | 1 | 493 | 1 | 494 | 0.0 | 1003 |
| MS.gene040109.t1 | MTR_8g107370 | 98.361 | 488 | 8 | 0 | 6 | 493 | 1 | 488 | 0.0 | 996 |
| MS.gene040109.t1 | MTR_8g107370 | 98.268 | 462 | 7 | 1 | 1 | 461 | 1 | 462 | 0.0 | 939 |
| MS.gene040109.t1 | MTR_8g107370 | 96.214 | 449 | 16 | 1 | 1 | 448 | 1 | 449 | 0.0 | 867 |
| MS.gene040109.t1 | MTR_6g069600 | 80.785 | 484 | 92 | 1 | 10 | 492 | 13 | 496 | 0.0 | 824 |
| MS.gene040109.t1 | MTR_3g032530 | 31.707 | 164 | 103 | 4 | 277 | 431 | 43 | 206 | 7.93e-14 | 72.4 |
| MS.gene040109.t1 | MTR_3g032530 | 31.707 | 164 | 103 | 4 | 277 | 431 | 86 | 249 | 1.26e-13 | 72.4 |
| MS.gene040109.t1 | MTR_1g014690 | 29.565 | 115 | 79 | 1 | 287 | 399 | 75 | 189 | 1.87e-11 | 65.5 |
| MS.gene040109.t1 | MTR_1g014690 | 29.565 | 115 | 79 | 1 | 287 | 399 | 130 | 244 | 2.17e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040109.t1 | AT1G48600 | 72.008 | 493 | 134 | 2 | 1 | 492 | 1 | 490 | 0.0 | 755 |
| MS.gene040109.t1 | AT3G18000 | 71.694 | 484 | 136 | 1 | 10 | 492 | 7 | 490 | 0.0 | 753 |
| MS.gene040109.t1 | AT1G73600 | 70.994 | 493 | 140 | 2 | 3 | 492 | 11 | 503 | 0.0 | 752 |
| MS.gene040109.t1 | AT1G73600 | 71.400 | 493 | 136 | 2 | 1 | 492 | 1 | 489 | 0.0 | 751 |
| MS.gene040109.t1 | AT1G48600 | 72.574 | 474 | 129 | 1 | 20 | 492 | 1 | 474 | 0.0 | 735 |
| MS.gene040109.t1 | AT5G13710 | 33.537 | 164 | 100 | 4 | 277 | 431 | 86 | 249 | 1.34e-14 | 75.5 |
| MS.gene040109.t1 | AT5G13710 | 33.537 | 164 | 100 | 4 | 277 | 431 | 86 | 249 | 1.34e-14 | 75.5 |
| MS.gene040109.t1 | AT1G64970 | 28.846 | 104 | 72 | 1 | 289 | 390 | 130 | 233 | 1.59e-11 | 66.2 |
Find 108 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCACGGGAAATCACATTTA+TGG | 0.261865 | 4.4:+222228 | None:intergenic |
| CAACTCTATCTAAGAACTTC+TGG | 0.266070 | 4.4:+223444 | None:intergenic |
| TCCTTTGAGCTTTCTCTTGT+GGG | 0.273120 | 4.4:-223663 | MS.gene040109:CDS |
| ACAAACCTTTGTGTAAAATC+TGG | 0.284632 | 4.4:+224186 | None:intergenic |
| GTGAACGAGGGGAGCAGAAG+TGG | 0.305672 | 4.4:-221012 | MS.gene040109:CDS |
| GATGGAAGGCGAAGCAGATC+AGG | 0.322790 | 4.4:-221036 | MS.gene040109:CDS |
| CCTTCAGAAACATCCATCTT+TGG | 0.322834 | 4.4:+224976 | None:intergenic |
| GAATCCTGTTTCCACCAATC+TGG | 0.329775 | 4.4:-224250 | MS.gene040109:CDS |
| CACTGATGAAGTCGTCCTTC+TGG | 0.335719 | 4.4:+221187 | None:intergenic |
| CTTGTCGAGATCAGAAGCTT+TGG | 0.356843 | 4.4:+226019 | None:intergenic |
| TGGTGCAGATTTGCTGGATA+TGG | 0.363415 | 4.4:-223499 | MS.gene040109:intron |
| AGGTTAGATCACATGATGAT+AGG | 0.371337 | 4.4:-223472 | MS.gene040109:CDS |
| TGGAAGATTTACCGGAGAAT+TGG | 0.371460 | 4.4:-225241 | MS.gene040109:CDS |
| GCCGGTATTGGAAGATTTAC+CGG | 0.377974 | 4.4:-225249 | MS.gene040109:CDS |
| TTCCTTCATATTCTGGTAGC+AGG | 0.383460 | 4.4:+225292 | None:intergenic |
| GCTGAAAGCTGGTCAATTGC+TGG | 0.390425 | 4.4:-225217 | MS.gene040109:CDS |
| ATCCCCAGATTGGTGGAAAC+AGG | 0.392051 | 4.4:+224246 | None:intergenic |
| CTGTAGAACGAAAGCATTAA+CGG | 0.397285 | 4.4:-225042 | MS.gene040109:intron |
| TTCCTTTGAGCTTTCTCTTG+TGG | 0.410639 | 4.4:-223664 | MS.gene040109:CDS |
| TGTTGAGGATCGAACTGATC+AGG | 0.414212 | 4.4:-221345 | MS.gene040109:intron |
| TTTATTAGCACTGGAGGACT+TGG | 0.419528 | 4.4:-223371 | MS.gene040109:intron |
| ATTGAGCTTGGAGCCGGTAT+TGG | 0.420522 | 4.4:-225261 | MS.gene040109:CDS |
| GGAAAATCAGTTATTGAGCT+TGG | 0.426730 | 4.4:-225273 | MS.gene040109:CDS |
| TTACGATATGAGCGCGTGTA+TGG | 0.432033 | 4.4:-223401 | MS.gene040109:CDS |
| CTGGATGTTGGTTGTGGTGT+TGG | 0.442233 | 4.4:-222310 | MS.gene040109:CDS |
| GGTTAGATCACATGATGATA+GGG | 0.442687 | 4.4:-223471 | MS.gene040109:CDS |
| GTGAAATTCAGAAATCATAC+TGG | 0.443496 | 4.4:-226088 | MS.gene040109:CDS |
| GTTGGTTGTGGTGTTGGCGG+AGG | 0.443753 | 4.4:-222304 | MS.gene040109:CDS |
| TTCTCTTTGAATCCCCAGAT+TGG | 0.446538 | 4.4:+224236 | None:intergenic |
| TGCCATATGAGTGATATCTC+TGG | 0.446888 | 4.4:-223690 | MS.gene040109:CDS |
| GGCCAAGGCTTTATTAGCAC+TGG | 0.447921 | 4.4:-223380 | MS.gene040109:CDS |
| CTGCAGATGCTGGAGAATGC+TGG | 0.456311 | 4.4:-221380 | MS.gene040109:intron |
| AATCCTGTTTCCACCAATCT+GGG | 0.456764 | 4.4:-224249 | MS.gene040109:CDS |
| TCCCAGAGATATCACTCATA+TGG | 0.459147 | 4.4:+223688 | None:intergenic |
| CAAACCTTTGTGTAAAATCT+GGG | 0.462103 | 4.4:+224187 | None:intergenic |
| AGCTTTCAGCGCCAATTCTC+CGG | 0.462761 | 4.4:+225230 | None:intergenic |
| CATTCTTCCATGGCTTCACC+AGG | 0.473107 | 4.4:-226214 | None:intergenic |
| GGAGAATTGGCGCTGAAAGC+TGG | 0.475774 | 4.4:-225228 | MS.gene040109:CDS |
| ATTGGTGGAAACAGGATTCT+CGG | 0.477277 | 4.4:+224254 | None:intergenic |
| TGAACGAGGGGAGCAGAAGT+GGG | 0.479207 | 4.4:-221011 | MS.gene040109:CDS |
| AGCTGGTCAATTGCTGGCTG+TGG | 0.479823 | 4.4:-225211 | MS.gene040109:CDS |
| ACGAGTGTAGATTACATCAT+AGG | 0.479962 | 4.4:+222126 | None:intergenic |
| CGTGCTATTGAACGTGCTAT+CGG | 0.481806 | 4.4:-222211 | MS.gene040109:CDS |
| GTAATTAGAAGTTGACCTCC+AGG | 0.482434 | 4.4:+221599 | None:intergenic |
| GCTCGTATTCTTTCATGTCA+TGG | 0.482515 | 4.4:+221504 | None:intergenic |
| ATTACAATCCTACTCACTAC+AGG | 0.482810 | 4.4:-224213 | MS.gene040109:CDS |
| GTTTGTGAAAACACTGCAGC+AGG | 0.484254 | 4.4:-221229 | MS.gene040109:CDS |
| GCTAAGCTGGAACTAAAGCC+TGG | 0.484547 | 4.4:-222343 | MS.gene040109:CDS |
| TAAAATGATCTAAATAATGT+TGG | 0.485432 | 4.4:+221635 | None:intergenic |
| CTTGTGGGCTGTAAATGCAT+TGG | 0.492972 | 4.4:-223648 | MS.gene040109:CDS |
| AAAGGAACTTGTAGCTAAGC+TGG | 0.495920 | 4.4:-222356 | MS.gene040109:CDS |
| CTCCAGTGCTAATAAAGCCT+TGG | 0.496405 | 4.4:+223378 | None:intergenic |
| TCCGGTAAATCTTCCAATAC+CGG | 0.497820 | 4.4:+225248 | None:intergenic |
| TCTTTGAATCCCCAGATTGG+TGG | 0.498788 | 4.4:+224239 | None:intergenic |
| ATTACATCATAGGTCTTCTC+AGG | 0.499504 | 4.4:+222136 | None:intergenic |
| TATTCAGCAAATTCTGAAGA+TGG | 0.499970 | 4.4:+221551 | None:intergenic |
| CCTTACTTTGATGTATAGCA+TGG | 0.513489 | 4.4:+222099 | None:intergenic |
| GATGTTGGTTGTGGTGTTGG+CGG | 0.516899 | 4.4:-222307 | MS.gene040109:CDS |
| TCAGTTATTGAGCTTGGAGC+CGG | 0.519308 | 4.4:-225267 | MS.gene040109:CDS |
| ACTGATTACTGCAAAAGTGC+TGG | 0.520458 | 4.4:-221578 | MS.gene040109:CDS |
| ACAATGAAATTGTGGAGAGA+TGG | 0.523489 | 4.4:-221054 | MS.gene040109:CDS |
| AGAATTTGCTGAATACATCA+AGG | 0.524867 | 4.4:-221543 | MS.gene040109:CDS |
| GATTTGCTGGATATGGCAAA+AGG | 0.528860 | 4.4:-223492 | MS.gene040109:CDS |
| GATGTATCTTTCAGATAATG+AGG | 0.530422 | 4.4:-224920 | MS.gene040109:intron |
| CATTGAGAGTGCAATAAAGA+AGG | 0.534730 | 4.4:-225184 | MS.gene040109:intron |
| TCCTTCATATTCTGGTAGCA+GGG | 0.535206 | 4.4:+225293 | None:intergenic |
| GCCATATGAGTGATATCTCT+GGG | 0.536166 | 4.4:-223689 | MS.gene040109:CDS |
| CATAATACCTGGTGAAGCCA+TGG | 0.538535 | 4.4:+226207 | None:intergenic |
| AAAGCCTGGACAGAAAGTAC+TGG | 0.538995 | 4.4:-222329 | MS.gene040109:CDS |
| TGATGTCACCTCTCCAAAGA+TGG | 0.540164 | 4.4:-224989 | MS.gene040109:CDS |
| ACATCCAGTACTTTCTGTCC+AGG | 0.542625 | 4.4:+222325 | None:intergenic |
| AAGCAGATCAGGGGTGAACG+AGG | 0.552850 | 4.4:-221025 | MS.gene040109:CDS |
| ATGGAAGGCGAAGCAGATCA+GGG | 0.557359 | 4.4:-221035 | MS.gene040109:CDS |
| TATGAGCGCGTGTATGGCCA+AGG | 0.560692 | 4.4:-223395 | MS.gene040109:CDS |
| TGGCGGAGGTGATTTCTACA+TGG | 0.570395 | 4.4:-222290 | MS.gene040109:CDS |
| CCAAAGATGGATGTTTCTGA+AGG | 0.571313 | 4.4:-224976 | MS.gene040109:CDS |
| ATGAAATGGTTGAAAGATGG+TGG | 0.574449 | 4.4:-224289 | MS.gene040109:CDS |
| CTGGGTTCCCTGTAGTGAGT+AGG | 0.586374 | 4.4:+224205 | None:intergenic |
| TGGATTTGATGTCATTGTTG+AGG | 0.596748 | 4.4:-221360 | MS.gene040109:CDS |
| GATAGCACGTTCAATAGCAC+GGG | 0.597140 | 4.4:+222213 | None:intergenic |
| ATGATGAAATGGTTGAAAGA+TGG | 0.599340 | 4.4:-224292 | MS.gene040109:CDS |
| GAACGAGGGGAGCAGAAGTG+GGG | 0.600599 | 4.4:-221010 | MS.gene040109:CDS |
| GGATGACTACAATGAAATTG+TGG | 0.600685 | 4.4:-221062 | MS.gene040109:CDS |
| CGATAGCACGTTCAATAGCA+CGG | 0.601134 | 4.4:+222212 | None:intergenic |
| AGAAACATCCATCTTTGGAG+AGG | 0.608120 | 4.4:+224981 | None:intergenic |
| GCAGATCAGGGGTGAACGAG+GGG | 0.609433 | 4.4:-221023 | MS.gene040109:CDS |
| TTTGCTGAATACATCAAGGA+AGG | 0.610174 | 4.4:-221539 | MS.gene040109:CDS |
| AGCAGATCAGGGGTGAACGA+GGG | 0.610403 | 4.4:-221024 | MS.gene040109:CDS |
| TGACATGAAAGAATACGAGC+AGG | 0.615612 | 4.4:-221501 | MS.gene040109:intron |
| CAAGGCTTTATTAGCACTGG+AGG | 0.615635 | 4.4:-223377 | MS.gene040109:CDS |
| CAAAGCTTCTGATCTCGACA+AGG | 0.622617 | 4.4:-226018 | MS.gene040109:CDS |
| AAATAAGAAGAATCAAAACC+AGG | 0.627133 | 4.4:-223613 | MS.gene040109:intron |
| ATCCTGTTTCCACCAATCTG+GGG | 0.633940 | 4.4:-224248 | MS.gene040109:CDS |
| TGAAATTGTGGAGAGATGGA+AGG | 0.635643 | 4.4:-221050 | MS.gene040109:CDS |
| GTTAGATCACATGATGATAG+GGG | 0.637701 | 4.4:-223470 | MS.gene040109:CDS |
| TTGTGCTGATCTCTCTGTCG+AGG | 0.638294 | 4.4:-226057 | MS.gene040109:CDS |
| TACAAGTGGTTGAAACCTGG+AGG | 0.640796 | 4.4:-221614 | MS.gene040109:CDS |
| AATTGCTCTCGAGAGCCAGA+AGG | 0.643480 | 4.4:-221202 | MS.gene040109:CDS |
| TCCCTGCTACCAGAATATGA+AGG | 0.647755 | 4.4:-225294 | MS.gene040109:CDS |
| GCTGAATACATCAAGGAAGG+AGG | 0.652193 | 4.4:-221536 | MS.gene040109:CDS |
| GGACAGAAAGTACTGGATGT+TGG | 0.652972 | 4.4:-222322 | MS.gene040109:CDS |
| GCCCACAAGAGAAAGCTCAA+AGG | 0.655286 | 4.4:+223662 | None:intergenic |
| TTCTTGGGCAGAAACGACAA+AGG | 0.658742 | 4.4:-222374 | MS.gene040109:intron |
| TTACAATCCTACTCACTACA+GGG | 0.660434 | 4.4:-224212 | MS.gene040109:CDS |
| GGGAAATCACATTTATGGAG+AGG | 0.665644 | 4.4:+222233 | None:intergenic |
| TGGAAGGCGAAGCAGATCAG+GGG | 0.665972 | 4.4:-221034 | MS.gene040109:CDS |
| AAAGTACTGGATGTTGGTTG+TGG | 0.671852 | 4.4:-222316 | MS.gene040109:CDS |
| CGACAAGGAAGAAAGACCTG+AGG | 0.732813 | 4.4:-226003 | MS.gene040109:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTAAAACATATTGAT+TGG | - | chr4.4:224373-224392 | MS.gene040109:intron | 10.0% |
| !!! | AAGAATTATTTTCATTTTAT+AGG | - | chr4.4:221380-221399 | MS.gene040109:intron | 10.0% |
| !!! | AGAATTATTTTCATTTTATA+GGG | - | chr4.4:221381-221400 | MS.gene040109:intron | 10.0% |
| !!! | ATTATCATTACATTTTATTT+TGG | - | chr4.4:224109-224128 | MS.gene040109:intron | 10.0% |
| !! | AAAACAAAATGAAATGAAAA+AGG | + | chr4.4:221801-221820 | None:intergenic | 15.0% |
| !! | GTAAATAAAAAAATCAACTT+TGG | - | chr4.4:222441-222460 | MS.gene040109:intron | 15.0% |
| !! | TAAAATGATCTAAATAATGT+TGG | + | chr4.4:225558-225577 | None:intergenic | 15.0% |
| !! | TAAATTAAAACCAAATGAAT+CGG | + | chr4.4:221522-221541 | None:intergenic | 15.0% |
| !! | TTTGTTTAATCTCAATTATT+GGG | - | chr4.4:222593-222612 | MS.gene040109:intron | 15.0% |
| !!! | AAAAGTGTATTATACTTAAT+TGG | + | chr4.4:221457-221476 | None:intergenic | 15.0% |
| !!! | AATCAAAGCTTTTAAATTAA+GGG | + | chr4.4:226101-226120 | None:intergenic | 15.0% |
| !!! | CTTTTGTAATACTTTATTTT+AGG | - | chr4.4:226066-226085 | MS.gene040109:CDS | 15.0% |
| !!! | GTTTTTTTTTCTTTTCAATT+CGG | - | chr4.4:222338-222357 | MS.gene040109:CDS | 15.0% |
| !!! | TCATATAATTTTTTAGAACA+TGG | - | chr4.4:224552-224571 | MS.gene040109:intron | 15.0% |
| !!! | TTTTGTTTAATCTCAATTAT+TGG | - | chr4.4:222592-222611 | MS.gene040109:intron | 15.0% |
| !!! | TTTTTAATCAAACAATAATC+TGG | + | chr4.4:223062-223081 | None:intergenic | 15.0% |
| !! | AAAATAATTCTTAACATCCA+CGG | + | chr4.4:221372-221391 | None:intergenic | 20.0% |
| !! | AATAACATTTACGAGTAATA+AGG | + | chr4.4:225306-225325 | None:intergenic | 20.0% |
| !! | AATGAAAAGGTAGAAAATAT+TGG | + | chr4.4:224058-224077 | None:intergenic | 20.0% |
| !! | AATGAATTACAGACATAAAA+AGG | + | chr4.4:225442-225461 | None:intergenic | 20.0% |
| !! | AATTATTATGTAATTGTACC+TGG | - | chr4.4:224235-224254 | MS.gene040109:CDS | 20.0% |
| !! | ACTAGAATAATTATTTGCAA+TGG | + | chr4.4:222561-222580 | None:intergenic | 20.0% |
| !! | TCATTATTATTACGACATTA+AGG | + | chr4.4:221041-221060 | None:intergenic | 20.0% |
| !! | TTAACATGTTCTTAAATTCA+CGG | + | chr4.4:222505-222524 | None:intergenic | 20.0% |
| !! | TTGTTTAATCTCAATTATTG+GGG | - | chr4.4:222594-222613 | MS.gene040109:intron | 20.0% |
| !!! | AGCTGTTTTATTTAATCAAA+AGG | + | chr4.4:223145-223164 | None:intergenic | 20.0% |
| !!! | ATAATTTTACTCAAACAAAC+TGG | - | chr4.4:221720-221739 | MS.gene040109:intron | 20.0% |
| !!! | ATTTTGATCAATCATTTTGT+TGG | - | chr4.4:225405-225424 | MS.gene040109:intron | 20.0% |
| !!! | ATTTTGATTAGACTATGAAT+TGG | + | chr4.4:221668-221687 | None:intergenic | 20.0% |
| !!! | CAATCAAAGCTTTTAAATTA+AGG | + | chr4.4:226102-226121 | None:intergenic | 20.0% |
| !!! | CTTTTTAATTTTCAAGCTAT+TGG | - | chr4.4:224332-224351 | MS.gene040109:intron | 20.0% |
| !!! | TATTTAGATCATTTTACAAG+TGG | - | chr4.4:225562-225581 | MS.gene040109:intron | 20.0% |
| !!! | TCATTGGATTATATTTTGTA+AGG | - | chr4.4:223369-223388 | MS.gene040109:intron | 20.0% |
| !!! | TGTGTACAATAATATTTTCA+TGG | - | chr4.4:223671-223690 | MS.gene040109:CDS | 20.0% |
| ! | AAAAAGATTGACATCAACTT+TGG | - | chr4.4:223079-223098 | MS.gene040109:intron | 25.0% |
| ! | AAAAGATTGACATCAACTTT+GGG | - | chr4.4:223080-223099 | MS.gene040109:intron | 25.0% |
| ! | AAAGAAAAGAAAACCAAGTA+TGG | + | chr4.4:224708-224727 | None:intergenic | 25.0% |
| ! | AAATAAGAAGAATCAAAACC+AGG | - | chr4.4:223577-223596 | MS.gene040109:intron | 25.0% |
| ! | AAATAATTCTTAACATCCAC+GGG | + | chr4.4:221371-221390 | None:intergenic | 25.0% |
| ! | AAATCCAGAATTCTTCTTAA+TGG | + | chr4.4:225383-225402 | None:intergenic | 25.0% |
| ! | AACAATAACAATTCTCAGAA+TGG | + | chr4.4:222048-222067 | None:intergenic | 25.0% |
| ! | ACATGTTTGAACCTAATTAA+CGG | - | chr4.4:223170-223189 | MS.gene040109:intron | 25.0% |
| ! | AGCATAAGATGATAATATGA+TGG | + | chr4.4:221318-221337 | None:intergenic | 25.0% |
| ! | AGTGTATGATTTCTATCTTA+TGG | - | chr4.4:223111-223130 | MS.gene040109:intron | 25.0% |
| ! | ATTAAGAAATGTGAAAGATG+AGG | + | chr4.4:221220-221239 | None:intergenic | 25.0% |
| ! | CAAATTATAAGTGTATAGTG+TGG | + | chr4.4:222776-222795 | None:intergenic | 25.0% |
| ! | CACAAACAAATATATCCATT+TGG | - | chr4.4:224585-224604 | MS.gene040109:intron | 25.0% |
| ! | CACACTATACACTTATAATT+TGG | - | chr4.4:222774-222793 | MS.gene040109:intron | 25.0% |
| ! | CATTACACGATAATTATAAG+AGG | + | chr4.4:224195-224214 | None:intergenic | 25.0% |
| ! | GATATTGCAAAGAGAAAATT+AGG | + | chr4.4:221614-221633 | None:intergenic | 25.0% |
| ! | GGTATGATATATCAGATTAA+TGG | + | chr4.4:221480-221499 | None:intergenic | 25.0% |
| ! | TAAGAGGAAGAATAATCAAA+TGG | + | chr4.4:224179-224198 | None:intergenic | 25.0% |
| ! | TAGCAAAAAGAATGATGAAA+TGG | - | chr4.4:222887-222906 | MS.gene040109:intron | 25.0% |
| ! | TTAACAAAACATGACTTAGT+TGG | - | chr4.4:222813-222832 | MS.gene040109:intron | 25.0% |
| ! | TTATGAGTTGCTTAATTCTT+GGG | - | chr4.4:224801-224820 | MS.gene040109:intron | 25.0% |
| ! | TTGCAAGCAAATTAAACTAT+TGG | - | chr4.4:225344-225363 | MS.gene040109:intron | 25.0% |
| ! | TTGTACTAAATAGCTTATTG+CGG | - | chr4.4:222724-222743 | MS.gene040109:intron | 25.0% |
| !! | AATAACTTCATTGTTACTTG+TGG | - | chr4.4:225932-225951 | MS.gene040109:intron | 25.0% |
| !! | CAAATTTTATGGAAATACGT+GGG | + | chr4.4:221758-221777 | None:intergenic | 25.0% |
| !! | TCGTAAATGTTATTCCTTTT+TGG | - | chr4.4:225312-225331 | MS.gene040109:intron | 25.0% |
| !! | TCTAACATGTTAATTTGAAG+CGG | + | chr4.4:223868-223887 | None:intergenic | 25.0% |
| !! | TTGATGTGATTTTCTCAAAT+TGG | - | chr4.4:222242-222261 | MS.gene040109:CDS | 25.0% |
| !! | TTTTCTACCTTTTCATTCTT+TGG | - | chr4.4:224061-224080 | MS.gene040109:intron | 25.0% |
| !!! | TAAAAGCTTTGATTGTTTTC+AGG | - | chr4.4:226107-226126 | MS.gene040109:CDS | 25.0% |
| AAAAGAACTTAACCTTGATC+AGG | + | chr4.4:224753-224772 | None:intergenic | 30.0% | |
| AAACTTCCACACTTATACTT+TGG | - | chr4.4:221585-221604 | MS.gene040109:CDS | 30.0% | |
| AAAGAGAGTAAGACAACAAA+CGG | + | chr4.4:225716-225735 | None:intergenic | 30.0% | |
| AACATTTACGAGTAATAAGG+TGG | + | chr4.4:225303-225322 | None:intergenic | 30.0% | |
| ACAAACCTTTGTGTAAAATC+TGG | + | chr4.4:223007-223026 | None:intergenic | 30.0% | |
| ACATGTATACATCAGTCAAT+TGG | + | chr4.4:223654-223673 | None:intergenic | 30.0% | |
| ATCAAAGTTACCAAACCAAA+AGG | + | chr4.4:223404-223423 | None:intergenic | 30.0% | |
| ATGAATACAAAAGCAATGTC+TGG | + | chr4.4:221843-221862 | None:intergenic | 30.0% | |
| ATGATGAAATGGTTGAAAGA+TGG | - | chr4.4:222898-222917 | MS.gene040109:intron | 30.0% | |
| ATGTATGATTGTATGAACTG+TGG | - | chr4.4:222380-222399 | MS.gene040109:intron | 30.0% | |
| ATTATAAGTGTATAGTGTGG+CGG | + | chr4.4:222773-222792 | None:intergenic | 30.0% | |
| ATTTCAAGATACGATCCAAA+TGG | + | chr4.4:224603-224622 | None:intergenic | 30.0% | |
| CAAACCTTTGTGTAAAATCT+GGG | + | chr4.4:223006-223025 | None:intergenic | 30.0% | |
| CATGTTTGAACCTAATTAAC+GGG | - | chr4.4:223171-223190 | MS.gene040109:intron | 30.0% | |
| CTATATTAAGTGATAAGCAG+CGG | + | chr4.4:224641-224660 | None:intergenic | 30.0% | |
| CTTATGAGTTGCTTAATTCT+TGG | - | chr4.4:224800-224819 | MS.gene040109:intron | 30.0% | |
| GATGTATCTTTCAGATAATG+AGG | - | chr4.4:222270-222289 | MS.gene040109:CDS | 30.0% | |
| GATTAGACTATGAATTGGAT+TGG | + | chr4.4:221663-221682 | None:intergenic | 30.0% | |
| GTGAAATTCAGAAATCATAC+TGG | - | chr4.4:221102-221121 | MS.gene040109:intron | 30.0% | |
| TAAAAGAATACCTAAGCTCT+AGG | - | chr4.4:225252-225271 | MS.gene040109:CDS | 30.0% | |
| TAAGTGTGGAAGTTTGAAAA+CGG | + | chr4.4:221580-221599 | None:intergenic | 30.0% | |
| TTAAATACCTGCATGAACAA+AGG | + | chr4.4:223476-223495 | None:intergenic | 30.0% | |
| TTAAGTTACTAAGCAAAGCA+TGG | - | chr4.4:222521-222540 | MS.gene040109:intron | 30.0% | |
| TTCTCTTTGCAATATCAACA+AGG | - | chr4.4:221618-221637 | MS.gene040109:CDS | 30.0% | |
| ! | AATTAAACTATTGGTCTCGT+TGG | - | chr4.4:225353-225372 | MS.gene040109:intron | 30.0% |
| ! | ACATTGACAGGCAAATTTTA+TGG | + | chr4.4:221769-221788 | None:intergenic | 30.0% |
| ! | GCAAATTTTATGGAAATACG+TGG | + | chr4.4:221759-221778 | None:intergenic | 30.0% |
| ! | GTAAGGCAAATAATACCTTT+TGG | - | chr4.4:223386-223405 | MS.gene040109:CDS | 30.0% |
| ! | TATTCAGCAAATTCTGAAGA+TGG | + | chr4.4:225642-225661 | None:intergenic | 30.0% |
| ! | TCTAGTAATTACAAGGTGTT+AGG | - | chr4.4:223940-223959 | MS.gene040109:intron | 30.0% |
| ! | TGATAATATGATGGTGCAAT+TGG | + | chr4.4:221309-221328 | None:intergenic | 30.0% |
| !! | AATTTTGATGTTGAGGTTGT+TGG | - | chr4.4:224928-224947 | MS.gene040109:CDS | 30.0% |
| !! | ACTGATTTTCCTTCATATTC+TGG | + | chr4.4:221908-221927 | None:intergenic | 30.0% |
| !! | AGAATTTGCTGAATACATCA+AGG | - | chr4.4:225647-225666 | MS.gene040109:intron | 30.0% |
| !! | CAATCATTTTGTTGGCTAAA+GGG | - | chr4.4:225413-225432 | MS.gene040109:intron | 30.0% |
| !! | GCAAATAATACCTTTTGGTT+TGG | - | chr4.4:223391-223410 | MS.gene040109:CDS | 30.0% |
| !! | TCAATCATTTTGTTGGCTAA+AGG | - | chr4.4:225412-225431 | MS.gene040109:intron | 30.0% |
| !!! | CTTCTCAGGATATGTTTTTT+TGG | + | chr4.4:225043-225062 | None:intergenic | 30.0% |
| !!! | GGTTGCTTTTCCAAATTTTA+CGG | - | chr4.4:223231-223250 | MS.gene040109:intron | 30.0% |
| !!! | TTTAATCCTGCTTTTTTACC+TGG | + | chr4.4:223598-223617 | None:intergenic | 30.0% |
| AAATGTGAAAGATGAGGAGA+CGG | + | chr4.4:221214-221233 | None:intergenic | 35.0% | |
| AAGTGTGGAAGTTTGAAAAC+GGG | + | chr4.4:221579-221598 | None:intergenic | 35.0% | |
| ACAAAACACTCCCGTTAATT+AGG | + | chr4.4:223184-223203 | None:intergenic | 35.0% | |
| ACAATGAAATTGTGGAGAGA+TGG | - | chr4.4:226136-226155 | MS.gene040109:intron | 35.0% | |
| ACGAGTGTAGATTACATCAT+AGG | + | chr4.4:225067-225086 | None:intergenic | 35.0% | |
| AGAATCTATCATCCTGATCA+AGG | - | chr4.4:224738-224757 | MS.gene040109:intron | 35.0% | |
| AGGTTAGATCACATGATGAT+AGG | - | chr4.4:223718-223737 | MS.gene040109:intron | 35.0% | |
| AGTGTCAGCTGAAATCAAAT+GGG | + | chr4.4:225741-225760 | None:intergenic | 35.0% | |
| AGTTAATGTTGAGCACTCAT+TGG | - | chr4.4:223353-223372 | MS.gene040109:intron | 35.0% | |
| ATACTTCAATACTAGCAACC+AGG | + | chr4.4:224256-224275 | None:intergenic | 35.0% | |
| ATCAGTGATTTCAGCAATGT+GGG | - | chr4.4:226019-226038 | MS.gene040109:CDS | 35.0% | |
| ATGAAATGGTTGAAAGATGG+TGG | - | chr4.4:222901-222920 | MS.gene040109:intron | 35.0% | |
| ATGATATGTTGCTCTTAGAC+TGG | - | chr4.4:224669-224688 | MS.gene040109:intron | 35.0% | |
| ATTACAATCCTACTCACTAC+AGG | - | chr4.4:222977-222996 | MS.gene040109:intron | 35.0% | |
| ATTACATCATAGGTCTTCTC+AGG | + | chr4.4:225057-225076 | None:intergenic | 35.0% | |
| ATTCCAAGCAATTGTTACAG+AGG | + | chr4.4:225233-225252 | None:intergenic | 35.0% | |
| CAAATGAATCGGCTACTAAA+TGG | + | chr4.4:221511-221530 | None:intergenic | 35.0% | |
| CAACAATGAGTATCAAAGCT+AGG | + | chr4.4:224470-224489 | None:intergenic | 35.0% | |
| CAACTCTATCTAAGAACTTC+TGG | + | chr4.4:223749-223768 | None:intergenic | 35.0% | |
| CCATGCTATACATCAAAGTA+AGG | - | chr4.4:225091-225110 | MS.gene040109:intron | 35.0% | |
| CCTTACTTTGATGTATAGCA+TGG | + | chr4.4:225094-225113 | None:intergenic | 35.0% | |
| CTCTCCATTAAGAAGAATTC+TGG | - | chr4.4:225376-225395 | MS.gene040109:intron | 35.0% | |
| GAGTACATTGCAGAATACAA+AGG | + | chr4.4:225515-225534 | None:intergenic | 35.0% | |
| GCGGAGAAAGGAAAATATAA+AGG | + | chr4.4:223849-223868 | None:intergenic | 35.0% | |
| GGAAAATCAGTTATTGAGCT+TGG | - | chr4.4:221917-221936 | MS.gene040109:intron | 35.0% | |
| GGATGACTACAATGAAATTG+TGG | - | chr4.4:226128-226147 | MS.gene040109:intron | 35.0% | |
| GGTTAGATCACATGATGATA+GGG | - | chr4.4:223719-223738 | MS.gene040109:intron | 35.0% | |
| GTAACTGTAAGCATGAATGA+AGG | - | chr4.4:225181-225200 | MS.gene040109:intron | 35.0% | |
| GTTAGATCACATGATGATAG+GGG | - | chr4.4:223720-223739 | MS.gene040109:intron | 35.0% | |
| TACCTGGTCTAGTAATTACA+AGG | - | chr4.4:223933-223952 | MS.gene040109:intron | 35.0% | |
| TAGGCAAATAATACCCTGTT+GGG | - | chr4.4:223427-223446 | MS.gene040109:CDS | 35.0% | |
| TAGTGTCAGCTGAAATCAAA+TGG | + | chr4.4:225742-225761 | None:intergenic | 35.0% | |
| TATCCGTGTTTAACAGCATT+GGG | + | chr4.4:222637-222656 | None:intergenic | 35.0% | |
| TATCTTCTATCAGTGCTTTG+TGG | - | chr4.4:222476-222495 | MS.gene040109:intron | 35.0% | |
| TCAAAACCAGGTAAAAAAGC+AGG | - | chr4.4:223589-223608 | MS.gene040109:intron | 35.0% | |
| TCAAAGCTAGGCATTTCAAA+AGG | + | chr4.4:224458-224477 | None:intergenic | 35.0% | |
| TGAATGTATGATGCCATACT+TGG | - | chr4.4:224692-224711 | MS.gene040109:intron | 35.0% | |
| TGCAAGTGTAAGAACCAAAA+AGG | + | chr4.4:225329-225348 | None:intergenic | 35.0% | |
| TGGATTTGATGTCATTGTTG+AGG | - | chr4.4:225830-225849 | MS.gene040109:intron | 35.0% | |
| TTACAATCCTACTCACTACA+GGG | - | chr4.4:222978-222997 | MS.gene040109:intron | 35.0% | |
| TTGTAGTTATCTCTATCCCT+TGG | - | chr4.4:223030-223049 | MS.gene040109:intron | 35.0% | |
| TTGTATGAACTGTGGAGTAA+TGG | - | chr4.4:222388-222407 | MS.gene040109:intron | 35.0% | |
| TTGTATTCTGCAATGTACTC+TGG | - | chr4.4:225515-225534 | MS.gene040109:intron | 35.0% | |
| TTTACGAGTAATAAGGTGGA+TGG | + | chr4.4:225299-225318 | None:intergenic | 35.0% | |
| TTTCCCAATGCTGTTAAACA+CGG | - | chr4.4:222631-222650 | MS.gene040109:intron | 35.0% | |
| TTTGCTGAATACATCAAGGA+AGG | - | chr4.4:225651-225670 | MS.gene040109:intron | 35.0% | |
| ! | ATCAGGTTTGTTTGATCCTT+TGG | - | chr4.4:225862-225881 | MS.gene040109:intron | 35.0% |
| ! | CATTGAGAGTGCAATAAAGA+AGG | - | chr4.4:222006-222025 | MS.gene040109:intron | 35.0% |
| ! | CATTTAGTAGCCGATTCATT+TGG | - | chr4.4:221509-221528 | MS.gene040109:CDS | 35.0% |
| ! | GATTCGCATTTCAATTTTGC+AGG | - | chr4.4:221059-221078 | MS.gene040109:CDS | 35.0% |
| ! | GCTTTTCCAAATTTTACGGT+TGG | - | chr4.4:223235-223254 | MS.gene040109:intron | 35.0% |
| ! | GTTTGGTAACTTTGATCTGT+AGG | - | chr4.4:223408-223427 | MS.gene040109:CDS | 35.0% |
| ! | TGTTAATTTGAAGCGGAGAA+AGG | + | chr4.4:223861-223880 | None:intergenic | 35.0% |
| ! | TGTTTTGTGATGGTAAAGGT+GGG | - | chr4.4:223196-223215 | MS.gene040109:intron | 35.0% |
| ! | TTTTACAAGTGGTTGAAACC+TGG | - | chr4.4:225573-225592 | MS.gene040109:intron | 35.0% |
| !! | CTGTAGAACGAAAGCATTAA+CGG | - | chr4.4:222148-222167 | MS.gene040109:CDS | 35.0% |
| !! | CTTTTCATTCTTTGGTGACT+GGG | - | chr4.4:224069-224088 | MS.gene040109:intron | 35.0% |
| !! | GAATTGGATTGGTGCATTAT+TGG | + | chr4.4:221652-221671 | None:intergenic | 35.0% |
| !! | GGCTGAAAATTTTGATGTTG+AGG | - | chr4.4:224921-224940 | MS.gene040109:CDS | 35.0% |
| !! | TTTTCATTCTTTGGTGACTG+GGG | - | chr4.4:224070-224089 | MS.gene040109:intron | 35.0% |
| !!! | ACTGCTGTGTTTTTAGGTAA+GGG | + | chr4.4:223972-223991 | None:intergenic | 35.0% |
| !!! | CTAACCTTTTGTTTTTCCCT+TGG | - | chr4.4:222846-222865 | MS.gene040109:intron | 35.0% |
| AAAGGAACTTGTAGCTAAGC+TGG | - | chr4.4:224834-224853 | MS.gene040109:intron | 40.0% | |
| AATAATCTGGCAGAGACCAA+GGG | + | chr4.4:223049-223068 | None:intergenic | 40.0% | |
| AATCCTGTTTCCACCAATCT+GGG | - | chr4.4:222941-222960 | MS.gene040109:intron | 40.0% | |
| ACGTGTGCACAAGAAATAGT+TGG | - | chr4.4:224032-224051 | MS.gene040109:intron | 40.0% | |
| ACTATAGCACTGTTGTGTAG+TGG | + | chr4.4:222676-222695 | None:intergenic | 40.0% | |
| AGCACCAAGGGAAAAACAAA+AGG | + | chr4.4:222853-222872 | None:intergenic | 40.0% | |
| AGCACGGGAAATCACATTTA+TGG | + | chr4.4:224965-224984 | None:intergenic | 40.0% | |
| AGCTTATTGCGGAACAATAG+TGG | - | chr4.4:222735-222754 | MS.gene040109:intron | 40.0% | |
| AGGAGTCCAAAGTATAAGTG+TGG | + | chr4.4:221594-221613 | None:intergenic | 40.0% | |
| AGGTACGTAATGACATTGAC+AGG | + | chr4.4:221781-221800 | None:intergenic | 40.0% | |
| AGTGTGGAAGTTTGAAAACG+GGG | + | chr4.4:221578-221597 | None:intergenic | 40.0% | |
| ATGCTGTTAAACACGGATAG+TGG | - | chr4.4:222638-222657 | MS.gene040109:intron | 40.0% | |
| ATTGAAGTTACCAACCCAAC+AGG | + | chr4.4:223444-223463 | None:intergenic | 40.0% | |
| ATTGGTGGAAACAGGATTCT+CGG | + | chr4.4:222939-222958 | None:intergenic | 40.0% | |
| CAAATAATACCCTGTTGGGT+TGG | - | chr4.4:223431-223450 | MS.gene040109:CDS | 40.0% | |
| CAAGCAATTGTTACAGAGGA+AGG | + | chr4.4:225229-225248 | None:intergenic | 40.0% | |
| CACCTTGTAATTACTAGACC+AGG | + | chr4.4:223938-223957 | None:intergenic | 40.0% | |
| CATCAGTGATTTCAGCAATG+TGG | - | chr4.4:226018-226037 | MS.gene040109:CDS | 40.0% | |
| CATTGCAGAATACAAAGGTC+AGG | + | chr4.4:225510-225529 | None:intergenic | 40.0% | |
| CCAGTCACCAAAGAATGAAA+AGG | + | chr4.4:224071-224090 | None:intergenic | 40.0% | |
| CCTTCAGAAACATCCATCTT+TGG | + | chr4.4:222217-222236 | None:intergenic | 40.0% | |
| CTAGACCAGGTAAATGACAA+CGG | + | chr4.4:223925-223944 | None:intergenic | 40.0% | |
| CTATCCGTGTTTAACAGCAT+TGG | + | chr4.4:222638-222657 | None:intergenic | 40.0% | |
| CTTACAGTTACATACACCTG+GGG | + | chr4.4:225172-225191 | None:intergenic | 40.0% | |
| CTTCCTCTGTAACAATTGCT+TGG | - | chr4.4:225227-225246 | MS.gene040109:CDS | 40.0% | |
| GAGACACCAACCGTAAAATT+TGG | + | chr4.4:223244-223263 | None:intergenic | 40.0% | |
| GCCATATGAGTGATATCTCT+GGG | - | chr4.4:223501-223520 | MS.gene040109:intron | 40.0% | |
| GCTCGTATTCTTTCATGTCA+TGG | + | chr4.4:225689-225708 | None:intergenic | 40.0% | |
| GCTTACAGTTACATACACCT+GGG | + | chr4.4:225173-225192 | None:intergenic | 40.0% | |
| GGCTACTAAATGGTAGATGA+TGG | + | chr4.4:221501-221520 | None:intergenic | 40.0% | |
| GGGAAATCACATTTATGGAG+AGG | + | chr4.4:224960-224979 | None:intergenic | 40.0% | |
| GTAATTAGAAGTTGACCTCC+AGG | + | chr4.4:225594-225613 | None:intergenic | 40.0% | |
| GTAGGCAAATAATACCCTGT+TGG | - | chr4.4:223426-223445 | MS.gene040109:CDS | 40.0% | |
| GTTCTACAGAACGTTATGAG+TGG | + | chr4.4:222137-222156 | None:intergenic | 40.0% | |
| TACCAAGCAAACTAGACCAA+AGG | + | chr4.4:225881-225900 | None:intergenic | 40.0% | |
| TCACTTTCAACCTAGAGCTT+AGG | + | chr4.4:225265-225284 | None:intergenic | 40.0% | |
| TCCCAGAGATATCACTCATA+TGG | + | chr4.4:223505-223524 | None:intergenic | 40.0% | |
| TCCGGTAAATCTTCCAATAC+CGG | + | chr4.4:221945-221964 | None:intergenic | 40.0% | |
| TCCTTCATATTCTGGTAGCA+GGG | + | chr4.4:221900-221919 | None:intergenic | 40.0% | |
| TCCTTTGAGCTTTCTCTTGT+GGG | - | chr4.4:223527-223546 | MS.gene040109:intron | 40.0% | |
| TGAAATTGTGGAGAGATGGA+AGG | - | chr4.4:226140-226159 | MS.gene040109:intron | 40.0% | |
| TGACATGAAAGAATACGAGC+AGG | - | chr4.4:225689-225708 | MS.gene040109:intron | 40.0% | |
| TGAGTGAGTGACATAATACC+TGG | + | chr4.4:220997-221016 | None:intergenic | 40.0% | |
| TGCATGAACAAAGGAGAAGA+CGG | + | chr4.4:223467-223486 | None:intergenic | 40.0% | |
| TGCCATATGAGTGATATCTC+TGG | - | chr4.4:223500-223519 | MS.gene040109:intron | 40.0% | |
| TGCTTACAGTTACATACACC+TGG | + | chr4.4:225174-225193 | None:intergenic | 40.0% | |
| TGGAAGATTTACCGGAGAAT+TGG | - | chr4.4:221949-221968 | MS.gene040109:intron | 40.0% | |
| TTACTGTCAGTTGGAACCAT+GGG | + | chr4.4:222414-222433 | None:intergenic | 40.0% | |
| TTCCTTCATATTCTGGTAGC+AGG | + | chr4.4:221901-221920 | None:intergenic | 40.0% | |
| TTCCTTTGAGCTTTCTCTTG+TGG | - | chr4.4:223526-223545 | MS.gene040109:intron | 40.0% | |
| TTCTCTTTGAATCCCCAGAT+TGG | + | chr4.4:222957-222976 | None:intergenic | 40.0% | |
| TTGAAGTTACCAACCCAACA+GGG | + | chr4.4:223443-223462 | None:intergenic | 40.0% | |
| TTTACTGTCAGTTGGAACCA+TGG | + | chr4.4:222415-222434 | None:intergenic | 40.0% | |
| ! | ACAAGTAAGAGCATGACATC+AGG | - | chr4.4:221689-221708 | MS.gene040109:intron | 40.0% |
| ! | ACAGCTTGTTTACTGTCAGT+TGG | + | chr4.4:222423-222442 | None:intergenic | 40.0% |
| ! | ACTGATTACTGCAAAAGTGC+TGG | - | chr4.4:225612-225631 | MS.gene040109:intron | 40.0% |
| ! | AGAAACATCCATCTTTGGAG+AGG | + | chr4.4:222212-222231 | None:intergenic | 40.0% |
| ! | ATGTTCCGTTGTCATTTACC+TGG | - | chr4.4:223917-223936 | MS.gene040109:intron | 40.0% |
| ! | CAGCAGATTTAGAACACAAG+GGG | + | chr4.4:225793-225812 | None:intergenic | 40.0% |
| ! | CCAAAGATGGATGTTTCTGA+AGG | - | chr4.4:222214-222233 | MS.gene040109:CDS | 40.0% |
| ! | GCAGCAGATTTAGAACACAA+GGG | + | chr4.4:225794-225813 | None:intergenic | 40.0% |
| ! | GGAACCCAGATTTTACACAA+AGG | - | chr4.4:222999-223018 | MS.gene040109:intron | 40.0% |
| ! | GTGTTTTGTGATGGTAAAGG+TGG | - | chr4.4:223195-223214 | MS.gene040109:intron | 40.0% |
| ! | TGCAGCAGATTTAGAACACA+AGG | + | chr4.4:225795-225814 | None:intergenic | 40.0% |
| ! | TTTATTAGCACTGGAGGACT+TGG | - | chr4.4:223819-223838 | MS.gene040109:intron | 40.0% |
| ! | TTTTCATGGTGCAGATTTGC+TGG | - | chr4.4:223685-223704 | MS.gene040109:CDS | 40.0% |
| !! | AAAGTACTGGATGTTGGTTG+TGG | - | chr4.4:224874-224893 | MS.gene040109:intron | 40.0% |
| !! | ATCCTTTGGTCTAGTTTGCT+TGG | - | chr4.4:225876-225895 | MS.gene040109:intron | 40.0% |
| !! | ATGTACTCTGGATTTGTTGC+AGG | - | chr4.4:225527-225546 | MS.gene040109:intron | 40.0% |
| !! | CCTTTTCATTCTTTGGTGAC+TGG | - | chr4.4:224068-224087 | MS.gene040109:intron | 40.0% |
| !! | GATTTGCTGGATATGGCAAA+AGG | - | chr4.4:223698-223717 | MS.gene040109:CDS | 40.0% |
| !! | GGAGTGTTTTGTGATGGTAA+AGG | - | chr4.4:223192-223211 | MS.gene040109:intron | 40.0% |
| !!! | GACTGCTGTGTTTTTAGGTA+AGG | + | chr4.4:223973-223992 | None:intergenic | 40.0% |
| !!! | TTAACGGGAGTGTTTTGTGA+TGG | - | chr4.4:223186-223205 | MS.gene040109:intron | 40.0% |
| ACATCCAGTACTTTCTGTCC+AGG | + | chr4.4:224868-224887 | None:intergenic | 45.0% | |
| ATCCTGTTTCCACCAATCTG+GGG | - | chr4.4:222942-222961 | MS.gene040109:intron | 45.0% | |
| CAAAGCTTCTGATCTCGACA+AGG | - | chr4.4:221172-221191 | MS.gene040109:intron | 45.0% | |
| CAATAATCTGGCAGAGACCA+AGG | + | chr4.4:223050-223069 | None:intergenic | 45.0% | |
| CGATAGCACGTTCAATAGCA+CGG | + | chr4.4:224981-225000 | None:intergenic | 45.0% | |
| CTCCAGTGCTAATAAAGCCT+TGG | + | chr4.4:223815-223834 | None:intergenic | 45.0% | |
| CTTGTCGAGATCAGAAGCTT+TGG | + | chr4.4:221174-221193 | None:intergenic | 45.0% | |
| GAATCCTGTTTCCACCAATC+TGG | - | chr4.4:222940-222959 | MS.gene040109:intron | 45.0% | |
| GACATCAGCGCACAAAAACT+TGG | + | chr4.4:222188-222207 | None:intergenic | 45.0% | |
| GATAAGCAGCGGTGAATCTT+TGG | + | chr4.4:224630-224649 | None:intergenic | 45.0% | |
| GATAGCACGTTCAATAGCAC+GGG | + | chr4.4:224980-224999 | None:intergenic | 45.0% | |
| GCTGAATACATCAAGGAAGG+AGG | - | chr4.4:225654-225673 | MS.gene040109:intron | 45.0% | |
| GTCTTCTCCTTTGTTCATGC+AGG | - | chr4.4:223466-223485 | MS.gene040109:CDS | 45.0% | |
| GTTTGTGAAAACACTGCAGC+AGG | - | chr4.4:225961-225980 | MS.gene040109:intron | 45.0% | |
| TACAAGTGGTTGAAACCTGG+AGG | - | chr4.4:225576-225595 | MS.gene040109:intron | 45.0% | |
| TACATACACCTGGGGCTAAA+AGG | + | chr4.4:225164-225183 | None:intergenic | 45.0% | |
| TCAGTTATTGAGCTTGGAGC+CGG | - | chr4.4:221923-221942 | MS.gene040109:intron | 45.0% | |
| TCCCTGCTACCAGAATATGA+AGG | - | chr4.4:221896-221915 | MS.gene040109:intron | 45.0% | |
| TCTAAATCTGCTGCAGATGC+TGG | - | chr4.4:225800-225819 | MS.gene040109:intron | 45.0% | |
| TCTTTGAATCCCCAGATTGG+TGG | + | chr4.4:222954-222973 | None:intergenic | 45.0% | |
| TGATGTCACCTCTCCAAAGA+TGG | - | chr4.4:222201-222220 | MS.gene040109:CDS | 45.0% | |
| TGTTGAGGATCGAACTGATC+AGG | - | chr4.4:225845-225864 | MS.gene040109:intron | 45.0% | |
| TTACGATATGAGCGCGTGTA+TGG | - | chr4.4:223789-223808 | MS.gene040109:intron | 45.0% | |
| TTCTTGGGCAGAAACGACAA+AGG | - | chr4.4:224816-224835 | MS.gene040109:intron | 45.0% | |
| ! | AAAGCCTGGACAGAAAGTAC+TGG | - | chr4.4:224861-224880 | MS.gene040109:intron | 45.0% |
| ! | ATTCTCAACCTGAAGCACCA+AGG | + | chr4.4:222866-222885 | None:intergenic | 45.0% |
| ! | CAGCATTGGGAAATACTACG+CGG | + | chr4.4:222624-222643 | None:intergenic | 45.0% |
| ! | CGTGCTATTGAACGTGCTAT+CGG | - | chr4.4:224979-224998 | MS.gene040109:CDS | 45.0% |
| ! | CTTGTGGGCTGTAAATGCAT+TGG | - | chr4.4:223542-223561 | MS.gene040109:intron | 45.0% |
| ! | GCCGGTATTGGAAGATTTAC+CGG | - | chr4.4:221941-221960 | MS.gene040109:intron | 45.0% |
| ! | GTGTATAGTGTGGCGGAATT+TGG | + | chr4.4:222766-222785 | None:intergenic | 45.0% |
| ! | TTCTCAACCTGAAGCACCAA+GGG | + | chr4.4:222865-222884 | None:intergenic | 45.0% |
| !! | AAAGGTGGGCTATAGGTCAT+GGG | - | chr4.4:223210-223229 | MS.gene040109:intron | 45.0% |
| !! | AGCTTTATCCTTTTAGCCCC+AGG | - | chr4.4:225153-225172 | MS.gene040109:intron | 45.0% |
| !! | CAAGGCTTTATTAGCACTGG+AGG | - | chr4.4:223813-223832 | MS.gene040109:intron | 45.0% |
| !! | GGACAGAAAGTACTGGATGT+TGG | - | chr4.4:224868-224887 | MS.gene040109:intron | 45.0% |
| !! | TAAAGGTGGGCTATAGGTCA+TGG | - | chr4.4:223209-223228 | MS.gene040109:intron | 45.0% |
| !! | TGATGGTAAAGGTGGGCTAT+AGG | - | chr4.4:223203-223222 | MS.gene040109:intron | 45.0% |
| !! | TGGTGCAGATTTGCTGGATA+TGG | - | chr4.4:223691-223710 | MS.gene040109:CDS | 45.0% |
| !!! | TGTTTTTCCCTTGGTGCTTC+AGG | - | chr4.4:222855-222874 | MS.gene040109:intron | 45.0% |
| !!! | TTTATTTTTTTTATATACAT+AGG | - | chr4.4:221868-221887 | MS.gene040109:intron | 5.0% |
| AACTGTGGAGTAATGGCCCA+TGG | - | chr4.4:222395-222414 | MS.gene040109:intron | 50.0% | |
| AATTGCTCTCGAGAGCCAGA+AGG | - | chr4.4:225988-226007 | MS.gene040109:intron | 50.0% | |
| AGCTTTCAGCGCCAATTCTC+CGG | + | chr4.4:221963-221982 | None:intergenic | 50.0% | |
| ATCCACGGGTGAACTGAAGA+GGG | + | chr4.4:221357-221376 | None:intergenic | 50.0% | |
| ATCCCCAGATTGGTGGAAAC+AGG | + | chr4.4:222947-222966 | None:intergenic | 50.0% | |
| ATGGAAGGCGAAGCAGATCA+GGG | - | chr4.4:226155-226174 | MS.gene040109:intron | 50.0% | |
| ATTGAGCTTGGAGCCGGTAT+TGG | - | chr4.4:221929-221948 | MS.gene040109:intron | 50.0% | |
| CACTGATGAAGTCGTCCTTC+TGG | + | chr4.4:226006-226025 | None:intergenic | 50.0% | |
| CGACAAGGAAGAAAGACCTG+AGG | - | chr4.4:221187-221206 | MS.gene040109:CDS | 50.0% | |
| GCCCACAAGAGAAAGCTCAA+AGG | + | chr4.4:223531-223550 | None:intergenic | 50.0% | |
| GCTAAGCTGGAACTAAAGCC+TGG | - | chr4.4:224847-224866 | MS.gene040109:intron | 50.0% | |
| GCTGAAAGCTGGTCAATTGC+TGG | - | chr4.4:221973-221992 | MS.gene040109:intron | 50.0% | |
| TGGCGGAGGTGATTTCTACA+TGG | - | chr4.4:224900-224919 | MS.gene040109:intron | 50.0% | |
| ! | CTGGATGTTGGTTGTGGTGT+TGG | - | chr4.4:224880-224899 | MS.gene040109:intron | 50.0% |
| ! | GATGTTGGTTGTGGTGTTGG+CGG | - | chr4.4:224883-224902 | MS.gene040109:intron | 50.0% |
| ! | GCTGCGACTGCTGTGTTTTT+AGG | + | chr4.4:223978-223997 | None:intergenic | 50.0% |
| ! | TTGTGCTGATCTCTCTGTCG+AGG | - | chr4.4:221133-221152 | MS.gene040109:intron | 50.0% |
| !! | GGCCAAGGCTTTATTAGCAC+TGG | - | chr4.4:223810-223829 | MS.gene040109:intron | 50.0% |
| AAGATGAGGAGACGGACCTC+AGG | + | chr4.4:221206-221225 | None:intergenic | 55.0% | |
| AAGCAGATCAGGGGTGAACG+AGG | - | chr4.4:226165-226184 | MS.gene040109:intron | 55.0% | |
| AGCAGATCAGGGGTGAACGA+GGG | - | chr4.4:226166-226185 | MS.gene040109:intron | 55.0% | |
| CATCCACGGGTGAACTGAAG+AGG | + | chr4.4:221358-221377 | None:intergenic | 55.0% | |
| CTGCAGATGCTGGAGAATGC+TGG | - | chr4.4:225810-225829 | MS.gene040109:intron | 55.0% | |
| CTGGGTTCCCTGTAGTGAGT+AGG | + | chr4.4:222988-223007 | None:intergenic | 55.0% | |
| GATGGAAGGCGAAGCAGATC+AGG | - | chr4.4:226154-226173 | MS.gene040109:intron | 55.0% | |
| TATGAGCGCGTGTATGGCCA+AGG | - | chr4.4:223795-223814 | MS.gene040109:intron | 55.0% | |
| TGAACGAGGGGAGCAGAAGT+GGG | - | chr4.4:226179-226198 | MS.gene040109:intron | 55.0% | |
| TGGAAGGCGAAGCAGATCAG+GGG | - | chr4.4:226156-226175 | MS.gene040109:intron | 55.0% | |
| ! | AGCTGGTCAATTGCTGGCTG+TGG | - | chr4.4:221979-221998 | MS.gene040109:intron | 55.0% |
| ! | GGAGAATTGGCGCTGAAAGC+TGG | - | chr4.4:221962-221981 | MS.gene040109:intron | 55.0% |
| ! | TCAGCGAGAAGCGTGTGATC+AGG | - | chr4.4:224403-224422 | MS.gene040109:intron | 55.0% |
| CTCCCTCTTCAGTTCACCCG+TGG | - | chr4.4:221352-221371 | MS.gene040109:CDS | 60.0% | |
| GAACGAGGGGAGCAGAAGTG+GGG | - | chr4.4:226180-226199 | MS.gene040109:intron | 60.0% | |
| GCAGATCAGGGGTGAACGAG+GGG | - | chr4.4:226167-226186 | MS.gene040109:intron | 60.0% | |
| GTGAACGAGGGGAGCAGAAG+TGG | - | chr4.4:226178-226197 | MS.gene040109:intron | 60.0% | |
| !! | GTTGGTTGTGGTGTTGGCGG+AGG | - | chr4.4:224886-224905 | MS.gene040109:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 220985 | 226227 | 220985 | ID=MS.gene040109 |
| chr4.4 | mRNA | 220985 | 226227 | 220985 | ID=MS.gene040109.t1;Parent=MS.gene040109 |
| chr4.4 | exon | 226215 | 226227 | 226215 | ID=MS.gene040109.t1.exon1;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 226215 | 226227 | 226215 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| chr4.4 | exon | 226004 | 226131 | 226004 | ID=MS.gene040109.t1.exon2;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 226004 | 226131 | 226004 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| chr4.4 | exon | 225185 | 225322 | 225185 | ID=MS.gene040109.t1.exon3;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 225185 | 225322 | 225185 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| chr4.4 | exon | 224921 | 225058 | 224921 | ID=MS.gene040109.t1.exon4;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 224921 | 225058 | 224921 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| chr4.4 | exon | 224192 | 224335 | 224192 | ID=MS.gene040109.t1.exon5;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 224192 | 224335 | 224192 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| chr4.4 | exon | 223614 | 223724 | 223614 | ID=MS.gene040109.t1.exon6;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 223614 | 223724 | 223614 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| chr4.4 | exon | 223372 | 223513 | 223372 | ID=MS.gene040109.t1.exon7;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 223372 | 223513 | 223372 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| chr4.4 | exon | 222105 | 222385 | 222105 | ID=MS.gene040109.t1.exon8;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 222105 | 222385 | 222105 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| chr4.4 | exon | 221502 | 221663 | 221502 | ID=MS.gene040109.t1.exon9;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 221502 | 221663 | 221502 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| chr4.4 | exon | 221346 | 221396 | 221346 | ID=MS.gene040109.t1.exon10;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 221346 | 221396 | 221346 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| chr4.4 | exon | 221176 | 221250 | 221176 | ID=MS.gene040109.t1.exon11;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 221176 | 221250 | 221176 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| chr4.4 | exon | 220985 | 221083 | 220985 | ID=MS.gene040109.t1.exon12;Parent=MS.gene040109.t1 |
| chr4.4 | CDS | 220985 | 221083 | 220985 | ID=cds.MS.gene040109.t1;Parent=MS.gene040109.t1 |
| Gene Sequence |
| Protein sequence |
