Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040175.t1 | XP_003631017.1 | 97.6 | 806 | 16 | 1 | 1 | 806 | 2 | 804 | 0.00E+00 | 1321.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040175.t1 | Q8RXF1 | 66.3 | 832 | 207 | 12 | 1 | 806 | 1 | 785 | 6.4e-244 | 845.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040175.t1 | G7LCC6 | 97.6 | 806 | 16 | 1 | 1 | 806 | 2 | 804 | 0.0e+00 | 1321.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene040175 | MS.gene46269 | PPI |
| MS.gene040175 | MS.gene020229 | PPI |
| MS.gene06946 | MS.gene040175 | PPI |
| MS.gene02577 | MS.gene040175 | PPI |
| MS.gene040175 | MS.gene52116 | PPI |
| MS.gene73791 | MS.gene040175 | PPI |
| MS.gene022734 | MS.gene040175 | PPI |
| MS.gene040175 | MS.gene003478 | PPI |
| MS.gene057666 | MS.gene040175 | PPI |
| MS.gene040175 | MS.gene03206 | PPI |
| MS.gene73790 | MS.gene040175 | PPI |
| MS.gene46271 | MS.gene040175 | PPI |
| MS.gene040175 | MS.gene013791 | PPI |
| MS.gene013607 | MS.gene040175 | PPI |
| MS.gene39316 | MS.gene040175 | PPI |
| MS.gene06729 | MS.gene040175 | PPI |
| MS.gene013796 | MS.gene040175 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040175.t1 | MTR_8g106170 | 98.635 | 806 | 8 | 1 | 1 | 806 | 2 | 804 | 0.0 | 1600 |
| MS.gene040175.t1 | MTR_7g063860 | 81.568 | 472 | 40 | 4 | 337 | 806 | 1 | 427 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040175.t1 | AT1G14650 | 68.132 | 819 | 214 | 14 | 1 | 806 | 1 | 785 | 0.0 | 924 |
| MS.gene040175.t1 | AT1G14650 | 68.132 | 819 | 214 | 14 | 1 | 806 | 1 | 785 | 0.0 | 924 |
| MS.gene040175.t1 | AT1G14650 | 68.132 | 819 | 214 | 14 | 1 | 806 | 1 | 785 | 0.0 | 924 |
| MS.gene040175.t1 | AT1G14640 | 60.618 | 777 | 256 | 15 | 1 | 769 | 1 | 735 | 0.0 | 770 |
| MS.gene040175.t1 | AT1G14640 | 60.618 | 777 | 256 | 15 | 1 | 769 | 1 | 735 | 0.0 | 770 |
| MS.gene040175.t1 | AT4G16200 | 33.208 | 265 | 120 | 4 | 47 | 254 | 3 | 267 | 1.94e-34 | 134 |
| MS.gene040175.t1 | AT5G12280 | 51.034 | 145 | 50 | 3 | 653 | 797 | 294 | 417 | 1.16e-32 | 132 |
| MS.gene040175.t1 | AT5G12280 | 27.969 | 261 | 132 | 9 | 61 | 320 | 89 | 294 | 9.42e-13 | 71.6 |
| MS.gene040175.t1 | AT5G06520 | 34.317 | 271 | 114 | 8 | 45 | 312 | 388 | 597 | 5.31e-32 | 133 |
| MS.gene040175.t1 | AT5G06520 | 25.896 | 251 | 158 | 5 | 68 | 310 | 92 | 322 | 1.68e-14 | 78.2 |
| MS.gene040175.t1 | AT5G06520 | 35.329 | 167 | 84 | 5 | 179 | 343 | 79 | 223 | 3.33e-14 | 77.0 |
| MS.gene040175.t1 | AT5G06890 | 57.333 | 75 | 20 | 3 | 724 | 797 | 2 | 65 | 2.14e-16 | 74.7 |
| MS.gene040175.t1 | AT3G49130 | 35.751 | 193 | 89 | 8 | 136 | 323 | 15 | 177 | 5.77e-15 | 77.0 |
| MS.gene040175.t1 | AT2G43960 | 25.373 | 268 | 156 | 8 | 61 | 319 | 9 | 241 | 7.22e-13 | 72.0 |
| MS.gene040175.t1 | AT3G27600 | 26.259 | 278 | 154 | 10 | 73 | 350 | 2 | 228 | 3.23e-12 | 68.9 |
Find 279 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGTGGTTTCTCGAATTT+TGG | 0.123945 | 4.4:-899844 | None:intergenic |
| GATCCCTGAGGATAAATTTC+TGG | 0.246584 | 4.4:+900616 | MS.gene040175:CDS |
| TGTTCTGACATTTCACTAAT+AGG | 0.261909 | 4.4:-899765 | None:intergenic |
| GCTTCCTCAGGTGGCGGCGG+TGG | 0.262509 | 4.4:-900533 | None:intergenic |
| CTTTCCTTACTGGTTTAAAC+TGG | 0.265112 | 4.4:-898972 | None:intergenic |
| TGTTTCTGCCTCTTCGGTTC+TGG | 0.276276 | 4.4:-900578 | None:intergenic |
| AGCAACCTAAGCAGGTTATA+TGG | 0.279454 | 4.4:+899991 | MS.gene040175:CDS |
| TTGGTTTCATGAAATGAAAT+TGG | 0.291074 | 4.4:-899149 | None:intergenic |
| ACTTGTCAATCCTGTCAAAA+AGG | 0.309455 | 4.4:-899109 | None:intergenic |
| CTTCCTCAGGTGGCGGCGGT+GGG | 0.310077 | 4.4:-900532 | None:intergenic |
| GGATCAAGTACTTTCCTTAC+TGG | 0.310295 | 4.4:-898982 | None:intergenic |
| CTCAATTTCTGCTTGTTAGC+AGG | 0.319229 | 4.4:-900909 | None:intergenic |
| ACATCATTACTATCAGTTTC+CGG | 0.319371 | 4.4:-898919 | None:intergenic |
| TGGTTTCATGAAATGAAATT+GGG | 0.327351 | 4.4:-899148 | None:intergenic |
| TCTTTCTGTTCTTTGTACTT+AGG | 0.329702 | 4.4:-899810 | None:intergenic |
| AGGCTGCCTGAAGGCATTAC+AGG | 0.330035 | 4.4:+899030 | MS.gene040175:CDS |
| CAAGCAATGTCACAGAATAT+TGG | 0.332342 | 4.4:+900050 | MS.gene040175:CDS |
| TCAACAATGTTTCTAATGTC+TGG | 0.333016 | 4.4:-898685 | None:intergenic |
| TCCTCAGGTGGCGGCGGTGG+GGG | 0.333801 | 4.4:-900530 | None:intergenic |
| AAGGGAAGAAGAGTGAAGTC+AGG | 0.334414 | 4.4:+899619 | MS.gene040175:CDS |
| AGCTTCTCTGTCAACCCCTT+TGG | 0.339349 | 4.4:-899234 | None:intergenic |
| TTAAACTGGGCAGAAATATC+AGG | 0.343919 | 4.4:-898958 | None:intergenic |
| TCCATTTCTACTTCCTTCCC+TGG | 0.346519 | 4.4:-899528 | None:intergenic |
| TGACCCTTGAGGAGGTTATA+AGG | 0.349562 | 4.4:+899466 | MS.gene040175:CDS |
| CAATATTCTGTGACATTGCT+TGG | 0.353663 | 4.4:-900049 | None:intergenic |
| AGATTTCCTTCATCAACATT+AGG | 0.356214 | 4.4:-900798 | None:intergenic |
| TCCTCCCCTGTAATGCCTTC+AGG | 0.358142 | 4.4:-899036 | None:intergenic |
| GTTCTGGTTCCTCTGGAAGC+GGG | 0.364838 | 4.4:-900562 | None:intergenic |
| TGGTTATTCATAGAAATTGA+TGG | 0.368365 | 4.4:-900380 | None:intergenic |
| GGCACTCCTTGAGGCGGAGG+TGG | 0.370443 | 4.4:-900509 | None:intergenic |
| ACAATCCTAATCGGTGGTTC+AGG | 0.371459 | 4.4:-899654 | None:intergenic |
| TCGTCATGTTTCTGCCTCTT+CGG | 0.382991 | 4.4:-900584 | None:intergenic |
| GTGCTGATAATATGCATGAT+AGG | 0.383722 | 4.4:-898812 | None:intergenic |
| AAATCTCAAAGGACAAGTTC+TGG | 0.387127 | 4.4:+900815 | MS.gene040175:CDS |
| GCCACACACACTAGAACTAT+TGG | 0.387802 | 4.4:+898646 | MS.gene040175:CDS |
| CACAATTTGTGGCTCGTAAC+GGG | 0.388021 | 4.4:+899082 | MS.gene040175:CDS |
| GGGAATGGATGCTGTTCGTT+TGG | 0.392171 | 4.4:+899584 | MS.gene040175:CDS |
| CAGTTCTTCACAATCCTAAT+CGG | 0.396930 | 4.4:-899663 | None:intergenic |
| ATCGGAAGGCCAATGCTATT+AGG | 0.398300 | 4.4:-900239 | None:intergenic |
| GGCATCTGCATTGGAGGAGG+AGG | 0.400365 | 4.4:-900311 | None:intergenic |
| AGAGGTTTCCAATGCTGTTA+AGG | 0.406420 | 4.4:+899944 | MS.gene040175:CDS |
| TGCATTGGAGGAGGAGGGGC+TGG | 0.408585 | 4.4:-900305 | None:intergenic |
| TTCCTCAGGTGGCGGCGGTG+GGG | 0.412252 | 4.4:-900531 | None:intergenic |
| CGATTAGGATTGTGAAGAAC+TGG | 0.415914 | 4.4:+899664 | MS.gene040175:CDS |
| TACAAATGGCTATGATTGAT+TGG | 0.416626 | 4.4:+899376 | MS.gene040175:CDS |
| ACTCCTTGAGGCGGAGGTGG+TGG | 0.417600 | 4.4:-900506 | None:intergenic |
| TCTGCAGGAAGCCTGTCTTC+TGG | 0.418705 | 4.4:-899693 | None:intergenic |
| TAGAAATTGATGGATGCATT+GGG | 0.419899 | 4.4:-900370 | None:intergenic |
| CTCTTGAGTGAGTTGAGCCT+CGG | 0.419908 | 4.4:-898566 | None:intergenic |
| CCTCACCCTCATCCACCATC+AGG | 0.421463 | 4.4:+900464 | MS.gene040175:CDS |
| AGTCCAGGTGGTGGCGGAAG+AGG | 0.422752 | 4.4:-900167 | None:intergenic |
| CCTCCCACTGATGGAAATCT+TGG | 0.425425 | 4.4:+898535 | MS.gene040175:CDS |
| CTGCCCAGTTTAAACCAGTA+AGG | 0.427365 | 4.4:+898968 | MS.gene040175:CDS |
| TTCTCTGTCAACCCCTTTGG+AGG | 0.429998 | 4.4:-899231 | None:intergenic |
| GGAGGAGGTGCAGCAGGACC+AGG | 0.431521 | 4.4:-900119 | None:intergenic |
| CTTGCACATTACAATGTTAG+TGG | 0.432552 | 4.4:+900966 | MS.gene040175:CDS |
| GGAGGTGGTGGATGCATCAT+AGG | 0.433352 | 4.4:-900494 | None:intergenic |
| GGTTCTGGTTCCTCTGGAAG+CGG | 0.435880 | 4.4:-900563 | None:intergenic |
| CCATTCCCTCTTTAACAAGC+TGG | 0.436500 | 4.4:-899569 | None:intergenic |
| ATCATGTGCATGCCTGGTCT+TGG | 0.437697 | 4.4:-900269 | None:intergenic |
| AAAGCTTACAGCACAATTTG+TGG | 0.438188 | 4.4:+899071 | MS.gene040175:CDS |
| CTCTTCGGTTCTGGTTCCTC+TGG | 0.439569 | 4.4:-900569 | None:intergenic |
| TAGAGATTCAACCAAGTTTG+TGG | 0.441618 | 4.4:+899716 | MS.gene040175:CDS |
| CTCAACGGTATCTTCTTCCA+TGG | 0.446855 | 4.4:-899505 | None:intergenic |
| AAGACCCTGAACCACCGATT+AGG | 0.451674 | 4.4:+899649 | MS.gene040175:CDS |
| ACCTGGGGATTCTGCTCTAC+TGG | 0.452022 | 4.4:+898879 | MS.gene040175:CDS |
| GCAACCTAAGCAGGTTATAT+GGG | 0.454626 | 4.4:+899992 | MS.gene040175:CDS |
| AAAACATTGTTGGACTTGCT+CGG | 0.455205 | 4.4:+899889 | MS.gene040175:CDS |
| CCACCAGGCATCTGCATTGG+AGG | 0.455548 | 4.4:-900317 | None:intergenic |
| AATTTCAGCCTTAACAGCAT+TGG | 0.456041 | 4.4:-899952 | None:intergenic |
| GGAGCATAAGGTCGTGGAAC+AGG | 0.458312 | 4.4:-900443 | None:intergenic |
| GGAGCGGGTAGAGGCAGTAT+AGG | 0.461262 | 4.4:-898514 | None:intergenic |
| TAAATTTCTGGCCCAACATC+CGG | 0.461914 | 4.4:+900628 | MS.gene040175:CDS |
| TTGGAGGAGGAGGGGCTGGC+CGG | 0.461945 | 4.4:-900301 | None:intergenic |
| ATAGAAATTGATGGATGCAT+TGG | 0.462446 | 4.4:-900371 | None:intergenic |
| GTAACTCCATACCGGATGTT+GGG | 0.465194 | 4.4:-900639 | None:intergenic |
| GAAGAAGATACCGTTGAGCC+AGG | 0.465828 | 4.4:+899510 | MS.gene040175:CDS |
| GGAATCAGTTCACCGGTGAT+AGG | 0.466222 | 4.4:-899744 | None:intergenic |
| CCTCCTCCAATGCAGATGCC+TGG | 0.466446 | 4.4:+900314 | MS.gene040175:CDS |
| GATCCAGGTGGTGGAGGAAT+GGG | 0.466476 | 4.4:-900410 | None:intergenic |
| GCCAGGGAAGGAAGTAGAAA+TGG | 0.466913 | 4.4:+899527 | MS.gene040175:CDS |
| CGTTTGGACGACAATGATGA+AGG | 0.467900 | 4.4:+899600 | MS.gene040175:CDS |
| GTGAGTTGAGCCTCGGGGAG+AGG | 0.468322 | 4.4:-898559 | None:intergenic |
| TCTGCTTGTTAGCAGGGAGT+TGG | 0.468431 | 4.4:-900902 | None:intergenic |
| AGATCCAGGTGGTGGAGGAA+TGG | 0.470134 | 4.4:-900411 | None:intergenic |
| GGTCTTGGAGGAGGTGCAGC+AGG | 0.470671 | 4.4:-900125 | None:intergenic |
| CAATCTTCTACTCAACAACC+TGG | 0.470871 | 4.4:+898862 | MS.gene040175:CDS |
| TCAATTTCTGCTTGTTAGCA+GGG | 0.474049 | 4.4:-900908 | None:intergenic |
| TCAGTGGGAGGAGCGGGTAG+AGG | 0.477017 | 4.4:-898523 | None:intergenic |
| ATGTGCATGCCTGGTCTTGG+TGG | 0.480550 | 4.4:-900266 | None:intergenic |
| TCTTGAGTGAGTTGAGCCTC+GGG | 0.481923 | 4.4:-898565 | None:intergenic |
| AGGCATTACAGGGGAGGAGC+TGG | 0.482536 | 4.4:+899041 | MS.gene040175:CDS |
| CATTCCCTCTTTAACAAGCT+GGG | 0.482811 | 4.4:-899568 | None:intergenic |
| CCATCCCATATAACCTGCTT+AGG | 0.482921 | 4.4:-899996 | None:intergenic |
| TTACTATCAGTTTCCGGCGC+AGG | 0.484148 | 4.4:-898913 | None:intergenic |
| AGGATTATTGCTAGTAATGC+GGG | 0.484277 | 4.4:+898754 | MS.gene040175:CDS |
| AGAGCAAGAAAGAATACAAA+TGG | 0.484421 | 4.4:+899362 | MS.gene040175:CDS |
| CGTCCTCTTCCGCCACCACC+TGG | 0.485094 | 4.4:+900164 | MS.gene040175:CDS |
| ATATTGTCCTTGAGAAAGCC+TGG | 0.486427 | 4.4:-900939 | None:intergenic |
| GGAGCTTCCTCAGGTGGCGG+CGG | 0.486510 | 4.4:-900536 | None:intergenic |
| AGAGGCCCAGCTTGTTAAAG+AGG | 0.486869 | 4.4:+899563 | MS.gene040175:CDS |
| GATTGCATCATGTGCATGCC+TGG | 0.488108 | 4.4:-900275 | None:intergenic |
| TGGGCCAGAAATTTATCCTC+AGG | 0.489392 | 4.4:-900620 | None:intergenic |
| TCTCAGTTCGTTGCTAAGAA+TGG | 0.490258 | 4.4:+898715 | MS.gene040175:CDS |
| ACTGTATACTGCTCAGCCTC+AGG | 0.491545 | 4.4:-899006 | None:intergenic |
| GGAGGAGCTTCCTCAGGTGG+CGG | 0.491552 | 4.4:-900539 | None:intergenic |
| AACTGAGATCCAGGTGGTGG+AGG | 0.493314 | 4.4:-900416 | None:intergenic |
| TTCTGGTTCCTCTGGAAGCG+GGG | 0.494469 | 4.4:-900561 | None:intergenic |
| AAATGATGAGCAACCTAAGC+AGG | 0.494557 | 4.4:+899983 | MS.gene040175:CDS |
| GGATGAGGGTGAGGAGCATA+AGG | 0.494580 | 4.4:-900455 | None:intergenic |
| GAAGGAAGTAGAAATGGAAA+TGG | 0.494847 | 4.4:+899533 | MS.gene040175:CDS |
| CCTGGTCTTGGTGGAGGCAT+CGG | 0.496100 | 4.4:-900257 | None:intergenic |
| TTTCCATCAGTGGGAGGAGC+GGG | 0.498622 | 4.4:-898529 | None:intergenic |
| TACTTCCTTCCCTGGCTCAA+CGG | 0.498862 | 4.4:-899520 | None:intergenic |
| GGACGAACTGAAGGCATACC+AGG | 0.501660 | 4.4:-900146 | None:intergenic |
| TTGGTTGAATCTCTATCTGC+AGG | 0.504250 | 4.4:-899708 | None:intergenic |
| CAATCCTAATCGGTGGTTCA+GGG | 0.505409 | 4.4:-899653 | None:intergenic |
| CTCTCCTTATAACCTCCTCA+AGG | 0.507940 | 4.4:-899470 | None:intergenic |
| TAAGGAATTCTCATGATGCT+AGG | 0.509471 | 4.4:+898484 | None:intergenic |
| GCATCTGCATTGGAGGAGGA+GGG | 0.511428 | 4.4:-900310 | None:intergenic |
| TCCTCAAGGGTCATCGGAGG+AGG | 0.511903 | 4.4:-899456 | None:intergenic |
| ACAGGAGTGAACTGAGATCC+AGG | 0.513045 | 4.4:-900425 | None:intergenic |
| ATCATCCCTGATGGTGGATG+AGG | 0.513066 | 4.4:-900470 | None:intergenic |
| TGCATGCCTGGTCTTGGTGG+AGG | 0.513801 | 4.4:-900263 | None:intergenic |
| AATGGAAATGGACGAGGAAG+AGG | 0.514865 | 4.4:+899545 | MS.gene040175:CDS |
| TCTGTTCCTAATGTTGATGA+AGG | 0.520094 | 4.4:+900792 | MS.gene040175:CDS |
| CCTTGCCGATGCATATTCAA+AGG | 0.520439 | 4.4:+899200 | MS.gene040175:CDS |
| CAAAATTCGAGAAACCACTT+TGG | 0.520666 | 4.4:+899845 | MS.gene040175:CDS |
| AGTAACTCCATACCGGATGT+TGG | 0.522679 | 4.4:-900640 | None:intergenic |
| TCGAGAAACCACTTTGGCAC+AGG | 0.523521 | 4.4:+899851 | MS.gene040175:CDS |
| CTCAAGAGGAGGTGGAGGAG+AGG | 0.526883 | 4.4:+898581 | MS.gene040175:CDS |
| TCAAGCACGGTAGTCATGTC+AGG | 0.527766 | 4.4:-899270 | None:intergenic |
| ACATTGCTTGGTTTGCAGTA+CGG | 0.529795 | 4.4:-900037 | None:intergenic |
| TGGATTGAGGAAATTAAACT+TGG | 0.530219 | 4.4:-898782 | None:intergenic |
| ATTCCCATTCCTCCACCACC+TGG | 0.532082 | 4.4:+900407 | MS.gene040175:CDS |
| TATTCTAATCCTAATAGCAT+TGG | 0.533446 | 4.4:+900230 | MS.gene040175:CDS |
| TGTCGGTGCTGCTTCCTCGA+TGG | 0.533606 | 4.4:-898617 | None:intergenic |
| GAAGGCATACCAGGTCTTGG+AGG | 0.534350 | 4.4:-900137 | None:intergenic |
| CATCTGCATTGGAGGAGGAG+GGG | 0.535322 | 4.4:-900309 | None:intergenic |
| GATGTGTGAATAGGCTGGAA+TGG | 0.536148 | 4.4:+899295 | MS.gene040175:CDS |
| ACTGAAGGCATACCAGGTCT+TGG | 0.536230 | 4.4:-900140 | None:intergenic |
| CTATCAGTTTCCGGCGCAGG+TGG | 0.537796 | 4.4:-898910 | None:intergenic |
| GGTTTCATGAAATGAAATTG+GGG | 0.538125 | 4.4:-899147 | None:intergenic |
| GATAGGGATCGGATGGATTG+AGG | 0.539119 | 4.4:-898795 | None:intergenic |
| ACAAGAGCAAGCTAGGCAAA+AGG | 0.539404 | 4.4:+899326 | MS.gene040175:CDS |
| TGTCCACCAGGCATCTGCAT+TGG | 0.540056 | 4.4:-900320 | None:intergenic |
| GATAGGAGAAACCACAAACT+TGG | 0.541207 | 4.4:-899727 | None:intergenic |
| GAGGAGGTGCAGCAGGACCA+GGG | 0.541548 | 4.4:-900118 | None:intergenic |
| AGGCTGAGCAGTATACAGTT+AGG | 0.542424 | 4.4:+899010 | MS.gene040175:CDS |
| GGGTGGTTGACCACCCATCA+TGG | 0.542510 | 4.4:-900348 | None:intergenic |
| AGGGAAGAAGAGTGAAGTCA+GGG | 0.544952 | 4.4:+899620 | MS.gene040175:CDS |
| GATGGTCACAGCGGTAGTAT+TGG | 0.545352 | 4.4:+900014 | MS.gene040175:CDS |
| CAGAAATTGAGTGGAAAACC+AGG | 0.545592 | 4.4:+900921 | MS.gene040175:CDS |
| TGCACATGATGCAATCTCTC+CGG | 0.546274 | 4.4:+900282 | MS.gene040175:CDS |
| TTTGTGGTTTCTCCTATCAC+CGG | 0.546292 | 4.4:+899732 | MS.gene040175:CDS |
| ATCATGCATATTATCAGCAC+AGG | 0.547508 | 4.4:+898815 | MS.gene040175:CDS |
| AATGTAAACATGCTGTGAGT+TGG | 0.547838 | 4.4:-899168 | None:intergenic |
| CACCACGCTCTCTCAAGGCT+AGG | 0.548324 | 4.4:-901004 | None:intergenic |
| CCAGGCATCTGCATTGGAGG+AGG | 0.550786 | 4.4:-900314 | None:intergenic |
| TTTGACAGGATTGACAAGTA+GGG | 0.551971 | 4.4:+899113 | MS.gene040175:CDS |
| GGAATCAGCTCCACCTGCGC+CGG | 0.552239 | 4.4:+898900 | MS.gene040175:CDS |
| GTGAACTGAGATCCAGGTGG+TGG | 0.552277 | 4.4:-900419 | None:intergenic |
| ATGTTTCTAATGTCTGGAGG+GGG | 0.553778 | 4.4:-898679 | None:intergenic |
| ATAACCTCCTCAAGGGTCAT+CGG | 0.554958 | 4.4:-899462 | None:intergenic |
| CATGTTATGCATAGGCCCAC+GGG | 0.557167 | 4.4:-900204 | None:intergenic |
| GGGTGAGGAGCATAAGGTCG+TGG | 0.557819 | 4.4:-900449 | None:intergenic |
| GTGGAGGAATGGGAATTCCT+TGG | 0.558214 | 4.4:-900400 | None:intergenic |
| TATGCATGATAGGGATCGGA+TGG | 0.558648 | 4.4:-898802 | None:intergenic |
| GTCTTGGTGGAGGCATCGGA+AGG | 0.559122 | 4.4:-900253 | None:intergenic |
| TCCAATAGTTCTAGTGTGTG+TGG | 0.560378 | 4.4:-898647 | None:intergenic |
| CAATGTTTCTAATGTCTGGA+GGG | 0.560753 | 4.4:-898681 | None:intergenic |
| ACTGGAAGAGACCAGAAGAC+AGG | 0.560860 | 4.4:+899682 | MS.gene040175:CDS |
| GGCATACCAGGTCTTGGAGG+AGG | 0.561127 | 4.4:-900134 | None:intergenic |
| GGCTGCCTGAAGGCATTACA+GGG | 0.561447 | 4.4:+899031 | MS.gene040175:CDS |
| TCAACTCACTCAAGAGGAGG+TGG | 0.562226 | 4.4:+898573 | MS.gene040175:CDS |
| CCAGCTTGTTAAAGAGGGAA+TGG | 0.563367 | 4.4:+899569 | MS.gene040175:CDS |
| CTACCCGCTCCTCCCACTGA+TGG | 0.563686 | 4.4:+898526 | MS.gene040175:CDS |
| TCTGGTTCCTCTGGAAGCGG+GGG | 0.564783 | 4.4:-900560 | None:intergenic |
| CCTGATGGTGGATGAGGGTG+AGG | 0.564822 | 4.4:-900464 | None:intergenic |
| AAAGCTAGTCCAGGTGGTGG+CGG | 0.566441 | 4.4:-900173 | None:intergenic |
| ACTCACTCAAGAGGAGGTGG+AGG | 0.566569 | 4.4:+898576 | MS.gene040175:CDS |
| TTCGTCATCCTGTGCCAAAG+TGG | 0.566833 | 4.4:-899859 | None:intergenic |
| GCACAATTTGTGGCTCGTAA+CGG | 0.567217 | 4.4:+899081 | MS.gene040175:CDS |
| CCGATGCCTCCACCAAGACC+AGG | 0.567355 | 4.4:+900257 | MS.gene040175:CDS |
| TGAAAGATGTGTGAATAGGC+TGG | 0.567577 | 4.4:+899290 | MS.gene040175:CDS |
| GAATATTGCATGTTATGCAT+AGG | 0.567763 | 4.4:-900212 | None:intergenic |
| AGCGTTCACAAGAGCAAGCT+AGG | 0.568094 | 4.4:+899319 | MS.gene040175:CDS |
| TCTACCACCACGCTCTCTCA+AGG | 0.569307 | 4.4:-901009 | None:intergenic |
| ATCATGGAATGTTGTCCACC+AGG | 0.571946 | 4.4:-900332 | None:intergenic |
| TCAACGGTATCTTCTTCCAT+GGG | 0.575775 | 4.4:-899504 | None:intergenic |
| GCATGTTATGCATAGGCCCA+CGG | 0.576194 | 4.4:-900205 | None:intergenic |
| TGCTGATAATATGCATGATA+GGG | 0.577580 | 4.4:-898811 | None:intergenic |
| ATGTGTGAATAGGCTGGAAT+GGG | 0.578972 | 4.4:+899296 | MS.gene040175:CDS |
| ATAATATGCATGATAGGGAT+CGG | 0.580636 | 4.4:-898806 | None:intergenic |
| ATGGTCTCGAATTCGAAAAG+AGG | 0.580662 | 4.4:+898734 | MS.gene040175:CDS |
| CATCCACCACCTCCGCCTCA+AGG | 0.581195 | 4.4:+900503 | MS.gene040175:CDS |
| AATCTTCTACTCAACAACCT+GGG | 0.581999 | 4.4:+898863 | MS.gene040175:CDS |
| AGTAGAAATGGAAATGGACG+AGG | 0.582780 | 4.4:+899539 | MS.gene040175:CDS |
| CAATCTCTGTCTGAAACTGT+TGG | 0.583138 | 4.4:+900849 | MS.gene040175:CDS |
| TGCTTGAAAGATGTGTGAAT+AGG | 0.583530 | 4.4:+899286 | MS.gene040175:CDS |
| GGCGGAAGAGGACGAACTGA+AGG | 0.584239 | 4.4:-900155 | None:intergenic |
| CGGTGCTGCTTCCTCGATGG+AGG | 0.587124 | 4.4:-898614 | None:intergenic |
| GCTGCACCTCCTCCAAGACC+TGG | 0.589894 | 4.4:+900128 | MS.gene040175:CDS |
| GCCTGAAGGCATTACAGGGG+AGG | 0.590308 | 4.4:+899035 | MS.gene040175:CDS |
| CCTAAGCAGGTTATATGGGA+TGG | 0.590606 | 4.4:+899996 | MS.gene040175:CDS |
| AGCATTGGAAACCTCTTCCT+CGG | 0.590624 | 4.4:-899937 | None:intergenic |
| CAAAACCTTTGAATATGCAT+CGG | 0.591581 | 4.4:-899205 | None:intergenic |
| GGACCAAGATTTCCATCAGT+GGG | 0.591807 | 4.4:-898538 | None:intergenic |
| GTTCTCTACAGGGACCTGCT+CGG | 0.592764 | 4.4:+900760 | MS.gene040175:intron |
| ACCACGCTCTCTCAAGGCTA+GGG | 0.592917 | 4.4:-901003 | None:intergenic |
| CTCACCCTCATCCACCATCA+GGG | 0.592948 | 4.4:+900465 | MS.gene040175:CDS |
| TGGTGGACAACATTCCATGA+TGG | 0.593958 | 4.4:+900334 | MS.gene040175:CDS |
| TCCAGTAGAGCAGAATCCCC+AGG | 0.594699 | 4.4:-898880 | None:intergenic |
| GGGCCAGAAATTTATCCTCA+GGG | 0.596236 | 4.4:-900619 | None:intergenic |
| TTCAAAGCTAGTCCAGGTGG+TGG | 0.596324 | 4.4:-900176 | None:intergenic |
| GTCACAGAATATTGGAAGTG+AGG | 0.597524 | 4.4:+900058 | MS.gene040175:CDS |
| ACAGATATACTGATCCGAGC+AGG | 0.598888 | 4.4:-900774 | None:intergenic |
| CGAGGCTCAACTCACTCAAG+AGG | 0.599376 | 4.4:+898567 | MS.gene040175:CDS |
| GGTAGATTCAAAGCTAGTCC+AGG | 0.601016 | 4.4:-900182 | None:intergenic |
| ACAATGTTTCTAATGTCTGG+AGG | 0.601626 | 4.4:-898682 | None:intergenic |
| AATGTTTCTAATGTCTGGAG+GGG | 0.603125 | 4.4:-898680 | None:intergenic |
| AGATACCGTTGAGCCAGGGA+AGG | 0.606017 | 4.4:+899515 | MS.gene040175:CDS |
| TGAAACTGTTGGCAGCCTGA+AGG | 0.606065 | 4.4:+900860 | MS.gene040175:CDS |
| TTCTTCACAATCCTAATCGG+TGG | 0.607876 | 4.4:-899660 | None:intergenic |
| GTTGATGAAGGAAATCTCAA+AGG | 0.607889 | 4.4:+900804 | MS.gene040175:CDS |
| ACTAATAGGAATCAGTTCAC+CGG | 0.608792 | 4.4:-899751 | None:intergenic |
| CCTCCAATGCAGATGCCTGG+TGG | 0.609030 | 4.4:+900317 | MS.gene040175:CDS |
| CTTTGAATATGCATCGGCAA+GGG | 0.609693 | 4.4:-899199 | None:intergenic |
| GGCTCAACTCACTCAAGAGG+AGG | 0.609831 | 4.4:+898570 | MS.gene040175:CDS |
| GAGAGGCAAGATGACGCCCA+TGG | 0.609864 | 4.4:+899488 | MS.gene040175:CDS |
| TTTCCTTACTGGTTTAAACT+GGG | 0.611741 | 4.4:-898971 | None:intergenic |
| TGGAAAACCAGGCTTTCTCA+AGG | 0.613141 | 4.4:+900932 | MS.gene040175:CDS |
| GGTGGACAACATTCCATGAT+GGG | 0.613612 | 4.4:+900335 | MS.gene040175:CDS |
| CCTTTGAATATGCATCGGCA+AGG | 0.614216 | 4.4:-899200 | None:intergenic |
| ATTTCCATCAGTGGGAGGAG+CGG | 0.614809 | 4.4:-898530 | None:intergenic |
| TCCCTAGCCTTGAGAGAGCG+TGG | 0.616920 | 4.4:+901002 | MS.gene040175:CDS |
| ATCATAGGCATCATCCCTGA+TGG | 0.617198 | 4.4:-900479 | None:intergenic |
| GAGGCCCAGCTTGTTAAAGA+GGG | 0.618696 | 4.4:+899564 | MS.gene040175:CDS |
| GCTAACAAGCAGAAATTGAG+TGG | 0.618988 | 4.4:+900912 | MS.gene040175:CDS |
| GAGGATTATTGCTAGTAATG+CGG | 0.619059 | 4.4:+898753 | MS.gene040175:CDS |
| ATAGGCATCATCCCTGATGG+TGG | 0.620175 | 4.4:-900476 | None:intergenic |
| GTTTGGACGACAATGATGAA+GGG | 0.620532 | 4.4:+899601 | MS.gene040175:CDS |
| GTTTCATGAAATGAAATTGG+GGG | 0.624393 | 4.4:-899146 | None:intergenic |
| TAGCTTTGAATCTACCCCGT+GGG | 0.625593 | 4.4:+900189 | MS.gene040175:CDS |
| TCAATTTCTATGAATAACCA+AGG | 0.629776 | 4.4:+900383 | MS.gene040175:CDS |
| ATTCACACATCTTTCAAGCA+CGG | 0.630916 | 4.4:-899283 | None:intergenic |
| ATCTTCTACTCAACAACCTG+GGG | 0.633425 | 4.4:+898864 | MS.gene040175:CDS |
| CTTGAGGAGGTTATAAGGAG+AGG | 0.633629 | 4.4:+899471 | MS.gene040175:CDS |
| GCACATTACAATGTTAGTGG+AGG | 0.635245 | 4.4:+900969 | MS.gene040175:CDS |
| AGGACCAAGATTTCCATCAG+TGG | 0.638600 | 4.4:-898539 | None:intergenic |
| TCATCCCTGATGGTGGATGA+GGG | 0.639696 | 4.4:-900469 | None:intergenic |
| CAGAGGAACCAGAACCGAAG+AGG | 0.642537 | 4.4:+900570 | MS.gene040175:CDS |
| GAAATTGATGGATGCATTGG+GGG | 0.643767 | 4.4:-900368 | None:intergenic |
| GTATACTGCTCAGCCTCAGG+AGG | 0.644159 | 4.4:-899003 | None:intergenic |
| TCCTCCGATGACCCTTGAGG+AGG | 0.644190 | 4.4:+899458 | MS.gene040175:CDS |
| ACCTCCTCAAGGGTCATCGG+AGG | 0.653141 | 4.4:-899459 | None:intergenic |
| AAGAAGATACCGTTGAGCCA+GGG | 0.654040 | 4.4:+899511 | MS.gene040175:CDS |
| ACCTCCTCCGATGACCCTTG+AGG | 0.658282 | 4.4:+899455 | MS.gene040175:CDS |
| TCTCCTTATAACCTCCTCAA+GGG | 0.658954 | 4.4:-899469 | None:intergenic |
| TATACAGTTAGGCTGCCTGA+AGG | 0.664754 | 4.4:+899021 | MS.gene040175:CDS |
| GAAAGTACTTGATCCTCCTG+AGG | 0.667068 | 4.4:+898990 | MS.gene040175:CDS |
| AGAAATTGATGGATGCATTG+GGG | 0.667566 | 4.4:-900369 | None:intergenic |
| GTGTGTGTGGCAACAGATGT+CGG | 0.667658 | 4.4:-898634 | None:intergenic |
| CCAAGATTTCCATCAGTGGG+AGG | 0.670695 | 4.4:-898535 | None:intergenic |
| ATTCTTAGCAACGAACTGAG+AGG | 0.675573 | 4.4:-898713 | None:intergenic |
| CGATTCTACTCTGATCCCTG+AGG | 0.677803 | 4.4:+900604 | MS.gene040175:CDS |
| CTTGAGTGAGTTGAGCCTCG+GGG | 0.678337 | 4.4:-898564 | None:intergenic |
| TGTTTCTAATGTCTGGAGGG+GGG | 0.689288 | 4.4:-898678 | None:intergenic |
| AAATCTTGGTCCTCTCCCCG+AGG | 0.690008 | 4.4:+898549 | MS.gene040175:CDS |
| CTAGCCTTGAGAGAGCGTGG+TGG | 0.691451 | 4.4:+901005 | MS.gene040175:CDS |
| CTAGCTTTGAATCTACCCCG+TGG | 0.691585 | 4.4:+900188 | MS.gene040175:CDS |
| AGATTCAAAGCTAGTCCAGG+TGG | 0.698870 | 4.4:-900179 | None:intergenic |
| GAGGTGCAGCAGGACCAGGG+AGG | 0.710329 | 4.4:-900115 | None:intergenic |
| GAATGAGAGATCCTCCATCG+AGG | 0.720923 | 4.4:+898603 | MS.gene040175:CDS |
| GCTGCCTGAAGGCATTACAG+GGG | 0.732158 | 4.4:+899032 | MS.gene040175:CDS |
| GGACAACATTCCATGATGGG+TGG | 0.739617 | 4.4:+900338 | MS.gene040175:CDS |
| ATGTTATGCATAGGCCCACG+GGG | 0.746373 | 4.4:-900203 | None:intergenic |
| GTTATATGGGATGGTCACAG+CGG | 0.750758 | 4.4:+900005 | MS.gene040175:CDS |
| GGAGTGAACTGAGATCCAGG+TGG | 0.837933 | 4.4:-900422 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAATATAAATGTATAAT+TGG | - | chr4.4:900703-900722 | None:intergenic | 10.0% |
| !! | TAATATAAATGTATAATTGG+TGG | - | chr4.4:900700-900719 | None:intergenic | 15.0% |
| ! | GAAATCTCAAAAAACATTGT+TGG | + | chr4.4:899879-899898 | MS.gene040175:CDS | 25.0% |
| ! | TATTCTAATCCTAATAGCAT+TGG | + | chr4.4:900230-900249 | MS.gene040175:CDS | 25.0% |
| ! | TCAATTTCTATGAATAACCA+AGG | + | chr4.4:900383-900402 | MS.gene040175:CDS | 25.0% |
| ! | TGGTTATTCATAGAAATTGA+TGG | - | chr4.4:900383-900402 | None:intergenic | 25.0% |
| ! | TGGTTTCATGAAATGAAATT+GGG | - | chr4.4:899151-899170 | None:intergenic | 25.0% |
| ! | TTGGTTTCATGAAATGAAAT+TGG | - | chr4.4:899152-899171 | None:intergenic | 25.0% |
| ACATCATTACTATCAGTTTC+CGG | - | chr4.4:898922-898941 | None:intergenic | 30.0% | |
| AGAGCAAGAAAGAATACAAA+TGG | + | chr4.4:899362-899381 | MS.gene040175:CDS | 30.0% | |
| AGATTTCCTTCATCAACATT+AGG | - | chr4.4:900801-900820 | None:intergenic | 30.0% | |
| ATAATATGCATGATAGGGAT+CGG | - | chr4.4:898809-898828 | None:intergenic | 30.0% | |
| CAAAACCTTTGAATATGCAT+CGG | - | chr4.4:899208-899227 | None:intergenic | 30.0% | |
| GAATATTGCATGTTATGCAT+AGG | - | chr4.4:900215-900234 | None:intergenic | 30.0% | |
| GGTTTCATGAAATGAAATTG+GGG | - | chr4.4:899150-899169 | None:intergenic | 30.0% | |
| GTTTCATGAAATGAAATTGG+GGG | - | chr4.4:899149-899168 | None:intergenic | 30.0% | |
| TACAAATGGCTATGATTGAT+TGG | + | chr4.4:899376-899395 | MS.gene040175:CDS | 30.0% | |
| TCTTTCTGTTCTTTGTACTT+AGG | - | chr4.4:899813-899832 | None:intergenic | 30.0% | |
| TGCTGATAATATGCATGATA+GGG | - | chr4.4:898814-898833 | None:intergenic | 30.0% | |
| TGGATTGAGGAAATTAAACT+TGG | - | chr4.4:898785-898804 | None:intergenic | 30.0% | |
| TGTTCTGACATTTCACTAAT+AGG | - | chr4.4:899768-899787 | None:intergenic | 30.0% | |
| TTATCAAAGTAACTCCATAC+CGG | - | chr4.4:900650-900669 | None:intergenic | 30.0% | |
| ! | ATAGAAATTGATGGATGCAT+TGG | - | chr4.4:900374-900393 | None:intergenic | 30.0% |
| ! | TAGAAATTGATGGATGCATT+GGG | - | chr4.4:900373-900392 | None:intergenic | 30.0% |
| ! | TCAACAATGTTTCTAATGTC+TGG | - | chr4.4:898688-898707 | None:intergenic | 30.0% |
| !! | TTTCCTTACTGGTTTAAACT+GGG | - | chr4.4:898974-898993 | None:intergenic | 30.0% |
| AAAGCTTACAGCACAATTTG+TGG | + | chr4.4:899071-899090 | MS.gene040175:CDS | 35.0% | |
| AAATCTCAAAGGACAAGTTC+TGG | + | chr4.4:900815-900834 | MS.gene040175:CDS | 35.0% | |
| AATCTTCTACTCAACAACCT+GGG | + | chr4.4:898863-898882 | MS.gene040175:CDS | 35.0% | |
| AATGAATCTAAAAACCTCCC+TGG | + | chr4.4:900101-900120 | MS.gene040175:CDS | 35.0% | |
| AATGTAAACATGCTGTGAGT+TGG | - | chr4.4:899171-899190 | None:intergenic | 35.0% | |
| AATTTCAGCCTTAACAGCAT+TGG | - | chr4.4:899955-899974 | None:intergenic | 35.0% | |
| ACTAATAGGAATCAGTTCAC+CGG | - | chr4.4:899754-899773 | None:intergenic | 35.0% | |
| ACTTGTCAATCCTGTCAAAA+AGG | - | chr4.4:899112-899131 | None:intergenic | 35.0% | |
| AGGATTATTGCTAGTAATGC+GGG | + | chr4.4:898754-898773 | MS.gene040175:CDS | 35.0% | |
| ATCATGCATATTATCAGCAC+AGG | + | chr4.4:898815-898834 | MS.gene040175:CDS | 35.0% | |
| ATTCACACATCTTTCAAGCA+CGG | - | chr4.4:899286-899305 | None:intergenic | 35.0% | |
| CAAAATTCGAGAAACCACTT+TGG | + | chr4.4:899845-899864 | MS.gene040175:CDS | 35.0% | |
| CAAGCAATGTCACAGAATAT+TGG | + | chr4.4:900050-900069 | MS.gene040175:CDS | 35.0% | |
| CAATATTCTGTGACATTGCT+TGG | - | chr4.4:900052-900071 | None:intergenic | 35.0% | |
| CAGTTCTTCACAATCCTAAT+CGG | - | chr4.4:899666-899685 | None:intergenic | 35.0% | |
| CTTGCACATTACAATGTTAG+TGG | + | chr4.4:900966-900985 | MS.gene040175:CDS | 35.0% | |
| GAAGGAAGTAGAAATGGAAA+TGG | + | chr4.4:899533-899552 | MS.gene040175:CDS | 35.0% | |
| GAGGATTATTGCTAGTAATG+CGG | + | chr4.4:898753-898772 | MS.gene040175:CDS | 35.0% | |
| TAGAGATTCAACCAAGTTTG+TGG | + | chr4.4:899716-899735 | MS.gene040175:CDS | 35.0% | |
| TCGGTAGTACCAAAAATATC+AGG | - | chr4.4:899921-899940 | None:intergenic | 35.0% | |
| TGCTTGAAAGATGTGTGAAT+AGG | + | chr4.4:899286-899305 | MS.gene040175:CDS | 35.0% | |
| TTAAACTGGGCAGAAATATC+AGG | - | chr4.4:898961-898980 | None:intergenic | 35.0% | |
| TTTGACAGGATTGACAAGTA+GGG | + | chr4.4:899113-899132 | MS.gene040175:CDS | 35.0% | |
| ! | AAAACATTGTTGGACTTGCT+CGG | + | chr4.4:899889-899908 | MS.gene040175:CDS | 35.0% |
| ! | AATAGATTTTGCTGACGATG+AGG | + | chr4.4:899422-899441 | MS.gene040175:CDS | 35.0% |
| ! | AATGTTTCTAATGTCTGGAG+GGG | - | chr4.4:898683-898702 | None:intergenic | 35.0% |
| ! | ACAATGTTTCTAATGTCTGG+AGG | - | chr4.4:898685-898704 | None:intergenic | 35.0% |
| ! | AGAAATTGATGGATGCATTG+GGG | - | chr4.4:900372-900391 | None:intergenic | 35.0% |
| ! | CAAAGTGGTTTCTCGAATTT+TGG | - | chr4.4:899847-899866 | None:intergenic | 35.0% |
| ! | CAATGTTTCTAATGTCTGGA+GGG | - | chr4.4:898684-898703 | None:intergenic | 35.0% |
| ! | GATTGATTGGCATGATTTTG+TGG | + | chr4.4:899389-899408 | MS.gene040175:CDS | 35.0% |
| ! | GTGCTGATAATATGCATGAT+AGG | - | chr4.4:898815-898834 | None:intergenic | 35.0% |
| ! | GTTGATGAAGGAAATCTCAA+AGG | + | chr4.4:900804-900823 | MS.gene040175:CDS | 35.0% |
| ! | TCAATTTCTGCTTGTTAGCA+GGG | - | chr4.4:900911-900930 | None:intergenic | 35.0% |
| ! | TCTGTTCCTAATGTTGATGA+AGG | + | chr4.4:900792-900811 | MS.gene040175:CDS | 35.0% |
| ! | TTTTGACAGGATTGACAAGT+AGG | + | chr4.4:899112-899131 | MS.gene040175:CDS | 35.0% |
| !! | CTTTCCTTACTGGTTTAAAC+TGG | - | chr4.4:898975-898994 | None:intergenic | 35.0% |
| !!! | TGATATTTTTGGTACTACCG+AGG | + | chr4.4:899920-899939 | MS.gene040175:CDS | 35.0% |
| AAATGATGAGCAACCTAAGC+AGG | + | chr4.4:899983-900002 | MS.gene040175:CDS | 40.0% | |
| AGAGGTTTCCAATGCTGTTA+AGG | + | chr4.4:899944-899963 | MS.gene040175:CDS | 40.0% | |
| AGCAACCTAAGCAGGTTATA+TGG | + | chr4.4:899991-900010 | MS.gene040175:CDS | 40.0% | |
| AGCCTGAAGGAAAAAATTGC+TGG | + | chr4.4:900873-900892 | MS.gene040175:CDS | 40.0% | |
| AGTAGAAATGGAAATGGACG+AGG | + | chr4.4:899539-899558 | MS.gene040175:CDS | 40.0% | |
| ATATTGTCCTTGAGAAAGCC+TGG | - | chr4.4:900942-900961 | None:intergenic | 40.0% | |
| ATCTTCTACTCAACAACCTG+GGG | + | chr4.4:898864-898883 | MS.gene040175:CDS | 40.0% | |
| ATGGTCTCGAATTCGAAAAG+AGG | + | chr4.4:898734-898753 | MS.gene040175:CDS | 40.0% | |
| ATGTGTGAATAGGCTGGAAT+GGG | + | chr4.4:899296-899315 | MS.gene040175:CDS | 40.0% | |
| ATTCTTAGCAACGAACTGAG+AGG | - | chr4.4:898716-898735 | None:intergenic | 40.0% | |
| CAATCTTCTACTCAACAACC+TGG | + | chr4.4:898862-898881 | MS.gene040175:CDS | 40.0% | |
| CAGAAATTGAGTGGAAAACC+AGG | + | chr4.4:900921-900940 | MS.gene040175:CDS | 40.0% | |
| CATTCCCTCTTTAACAAGCT+GGG | - | chr4.4:899571-899590 | None:intergenic | 40.0% | |
| CCTGAAGGAAAAAATTGCTG+GGG | + | chr4.4:900875-900894 | MS.gene040175:CDS | 40.0% | |
| CGATTAGGATTGTGAAGAAC+TGG | + | chr4.4:899664-899683 | MS.gene040175:CDS | 40.0% | |
| GATAGGAGAAACCACAAACT+TGG | - | chr4.4:899730-899749 | None:intergenic | 40.0% | |
| GATCCCTGAGGATAAATTTC+TGG | + | chr4.4:900616-900635 | MS.gene040175:CDS | 40.0% | |
| GCAACCTAAGCAGGTTATAT+GGG | + | chr4.4:899992-900011 | MS.gene040175:CDS | 40.0% | |
| GCACATTACAATGTTAGTGG+AGG | + | chr4.4:900969-900988 | MS.gene040175:CDS | 40.0% | |
| GCCTGAAGGAAAAAATTGCT+GGG | + | chr4.4:900874-900893 | MS.gene040175:CDS | 40.0% | |
| GCTAACAAGCAGAAATTGAG+TGG | + | chr4.4:900912-900931 | MS.gene040175:CDS | 40.0% | |
| GGATCAAGTACTTTCCTTAC+TGG | - | chr4.4:898985-899004 | None:intergenic | 40.0% | |
| GTCACAGAATATTGGAAGTG+AGG | + | chr4.4:900058-900077 | MS.gene040175:CDS | 40.0% | |
| GTTAGAATAGCATCAGTAGC+AGG | - | chr4.4:900732-900751 | None:intergenic | 40.0% | |
| GTTTGGACGACAATGATGAA+GGG | + | chr4.4:899601-899620 | MS.gene040175:CDS | 40.0% | |
| TCAACGGTATCTTCTTCCAT+GGG | - | chr4.4:899507-899526 | None:intergenic | 40.0% | |
| TCTCAGTTCGTTGCTAAGAA+TGG | + | chr4.4:898715-898734 | MS.gene040175:CDS | 40.0% | |
| TCTCCTTATAACCTCCTCAA+GGG | - | chr4.4:899472-899491 | None:intergenic | 40.0% | |
| TGAAAGATGTGTGAATAGGC+TGG | + | chr4.4:899290-899309 | MS.gene040175:CDS | 40.0% | |
| TTCTTCACAATCCTAATCGG+TGG | - | chr4.4:899663-899682 | None:intergenic | 40.0% | |
| TTGGTTGAATCTCTATCTGC+AGG | - | chr4.4:899711-899730 | None:intergenic | 40.0% | |
| TTTGTGGTTTCTCCTATCAC+CGG | + | chr4.4:899732-899751 | MS.gene040175:CDS | 40.0% | |
| ! | AACGGGAAATCCTTTTTGAC+AGG | + | chr4.4:899099-899118 | MS.gene040175:CDS | 40.0% |
| ! | ATGTTTCTAATGTCTGGAGG+GGG | - | chr4.4:898682-898701 | None:intergenic | 40.0% |
| ! | CAATCTCTGTCTGAAACTGT+TGG | + | chr4.4:900849-900868 | MS.gene040175:CDS | 40.0% |
| ! | CTCAATTTCTGCTTGTTAGC+AGG | - | chr4.4:900912-900931 | None:intergenic | 40.0% |
| ! | CTTTGAATATGCATCGGCAA+GGG | - | chr4.4:899202-899221 | None:intergenic | 40.0% |
| ! | GAAATTGATGGATGCATTGG+GGG | - | chr4.4:900371-900390 | None:intergenic | 40.0% |
| ! | TGATTGGCATGATTTTGTGG+TGG | + | chr4.4:899392-899411 | MS.gene040175:CDS | 40.0% |
| !! | AAAGGTTTTGATGCCTCCAA+AGG | + | chr4.4:899218-899237 | MS.gene040175:CDS | 40.0% |
| !! | AAGGTTTTGATGCCTCCAAA+GGG | + | chr4.4:899219-899238 | MS.gene040175:CDS | 40.0% |
| !! | ACATTGCTTGGTTTGCAGTA+CGG | - | chr4.4:900040-900059 | None:intergenic | 40.0% |
| !! | TAAATTTCTGGCCCAACATC+CGG | + | chr4.4:900628-900647 | MS.gene040175:CDS | 40.0% |
| !! | TCCAATAGTTCTAGTGTGTG+TGG | - | chr4.4:898650-898669 | None:intergenic | 40.0% |
| AACTGCCATCTGTTCTCTAC+AGG | + | chr4.4:900749-900768 | MS.gene040175:intron | 45.0% | |
| AAGAAGATACCGTTGAGCCA+GGG | + | chr4.4:899511-899530 | MS.gene040175:CDS | 45.0% | |
| AAGGGAAGAAGAGTGAAGTC+AGG | + | chr4.4:899619-899638 | MS.gene040175:CDS | 45.0% | |
| AATGGAAATGGACGAGGAAG+AGG | + | chr4.4:899545-899564 | MS.gene040175:CDS | 45.0% | |
| ACAAGAGCAAGCTAGGCAAA+AGG | + | chr4.4:899326-899345 | MS.gene040175:CDS | 45.0% | |
| ACAATCCTAATCGGTGGTTC+AGG | - | chr4.4:899657-899676 | None:intergenic | 45.0% | |
| ACAGATATACTGATCCGAGC+AGG | - | chr4.4:900777-900796 | None:intergenic | 45.0% | |
| ACTGCCATCTGTTCTCTACA+GGG | + | chr4.4:900750-900769 | MS.gene040175:intron | 45.0% | |
| AGATTCAAAGCTAGTCCAGG+TGG | - | chr4.4:900182-900201 | None:intergenic | 45.0% | |
| AGGACCAAGATTTCCATCAG+TGG | - | chr4.4:898542-898561 | None:intergenic | 45.0% | |
| AGGCTGAGCAGTATACAGTT+AGG | + | chr4.4:899010-899029 | MS.gene040175:CDS | 45.0% | |
| AGGGAAGAAGAGTGAAGTCA+GGG | + | chr4.4:899620-899639 | MS.gene040175:CDS | 45.0% | |
| AGTAACTCCATACCGGATGT+TGG | - | chr4.4:900643-900662 | None:intergenic | 45.0% | |
| ATAACCTCCTCAAGGGTCAT+CGG | - | chr4.4:899465-899484 | None:intergenic | 45.0% | |
| ATCATAGGCATCATCCCTGA+TGG | - | chr4.4:900482-900501 | None:intergenic | 45.0% | |
| ATCATGGAATGTTGTCCACC+AGG | - | chr4.4:900335-900354 | None:intergenic | 45.0% | |
| ATCGGAAGGCCAATGCTATT+AGG | - | chr4.4:900242-900261 | None:intergenic | 45.0% | |
| CAATCCTAATCGGTGGTTCA+GGG | - | chr4.4:899656-899675 | None:intergenic | 45.0% | |
| CACAATTTGTGGCTCGTAAC+GGG | + | chr4.4:899082-899101 | MS.gene040175:CDS | 45.0% | |
| CCATCCCATATAACCTGCTT+AGG | - | chr4.4:899999-900018 | None:intergenic | 45.0% | |
| CCATTCCCTCTTTAACAAGC+TGG | - | chr4.4:899572-899591 | None:intergenic | 45.0% | |
| CCTAAGCAGGTTATATGGGA+TGG | + | chr4.4:899996-900015 | MS.gene040175:CDS | 45.0% | |
| CCTTGCCGATGCATATTCAA+AGG | + | chr4.4:899200-899219 | MS.gene040175:CDS | 45.0% | |
| CGTTTGGACGACAATGATGA+AGG | + | chr4.4:899600-899619 | MS.gene040175:CDS | 45.0% | |
| CTCAACGGTATCTTCTTCCA+TGG | - | chr4.4:899508-899527 | None:intergenic | 45.0% | |
| CTCTCCTTATAACCTCCTCA+AGG | - | chr4.4:899473-899492 | None:intergenic | 45.0% | |
| CTGCCCAGTTTAAACCAGTA+AGG | + | chr4.4:898968-898987 | MS.gene040175:CDS | 45.0% | |
| CTTGAGGAGGTTATAAGGAG+AGG | + | chr4.4:899471-899490 | MS.gene040175:CDS | 45.0% | |
| GATGTGTGAATAGGCTGGAA+TGG | + | chr4.4:899295-899314 | MS.gene040175:CDS | 45.0% | |
| GCACAATTTGTGGCTCGTAA+CGG | + | chr4.4:899081-899100 | MS.gene040175:CDS | 45.0% | |
| GCCACACACACTAGAACTAT+TGG | + | chr4.4:898646-898665 | MS.gene040175:CDS | 45.0% | |
| GGACCAAGATTTCCATCAGT+GGG | - | chr4.4:898541-898560 | None:intergenic | 45.0% | |
| GGGCCAGAAATTTATCCTCA+GGG | - | chr4.4:900622-900641 | None:intergenic | 45.0% | |
| GGTAGATTCAAAGCTAGTCC+AGG | - | chr4.4:900185-900204 | None:intergenic | 45.0% | |
| GGTGGACAACATTCCATGAT+GGG | + | chr4.4:900335-900354 | MS.gene040175:CDS | 45.0% | |
| GTAACTCCATACCGGATGTT+GGG | - | chr4.4:900642-900661 | None:intergenic | 45.0% | |
| GTTATATGGGATGGTCACAG+CGG | + | chr4.4:900005-900024 | MS.gene040175:CDS | 45.0% | |
| TATACAGTTAGGCTGCCTGA+AGG | + | chr4.4:899021-899040 | MS.gene040175:CDS | 45.0% | |
| TATGCATGATAGGGATCGGA+TGG | - | chr4.4:898805-898824 | None:intergenic | 45.0% | |
| TCCATTTCTACTTCCTTCCC+TGG | - | chr4.4:899531-899550 | None:intergenic | 45.0% | |
| TGACCCTTGAGGAGGTTATA+AGG | + | chr4.4:899466-899485 | MS.gene040175:CDS | 45.0% | |
| TGCACATGATGCAATCTCTC+CGG | + | chr4.4:900282-900301 | MS.gene040175:CDS | 45.0% | |
| TGGAAAACCAGGCTTTCTCA+AGG | + | chr4.4:900932-900951 | MS.gene040175:CDS | 45.0% | |
| TGGGCCAGAAATTTATCCTC+AGG | - | chr4.4:900623-900642 | None:intergenic | 45.0% | |
| ! | AGCATTGGAAACCTCTTCCT+CGG | - | chr4.4:899940-899959 | None:intergenic | 45.0% |
| ! | CCTTTGAATATGCATCGGCA+AGG | - | chr4.4:899203-899222 | None:intergenic | 45.0% |
| ! | CGGACTCGTCCTGATATTTT+TGG | + | chr4.4:899909-899928 | MS.gene040175:CDS | 45.0% |
| ! | TCGTCATGTTTCTGCCTCTT+CGG | - | chr4.4:900587-900606 | None:intergenic | 45.0% |
| ! | TGGTGGACAACATTCCATGA+TGG | + | chr4.4:900334-900353 | MS.gene040175:CDS | 45.0% |
| ! | TGTTTCTAATGTCTGGAGGG+GGG | - | chr4.4:898681-898700 | None:intergenic | 45.0% |
| ! | TTTTGGTACTACCGAGGAAG+AGG | + | chr4.4:899926-899945 | MS.gene040175:CDS | 45.0% |
| !! | AGGTTTTGATGCCTCCAAAG+GGG | + | chr4.4:899220-899239 | MS.gene040175:CDS | 45.0% |
| !! | CCAGCTTGTTAAAGAGGGAA+TGG | + | chr4.4:899569-899588 | MS.gene040175:CDS | 45.0% |
| !! | GAAAGTACTTGATCCTCCTG+AGG | + | chr4.4:898990-899009 | MS.gene040175:CDS | 45.0% |
| !! | TAGCTTTGAATCTACCCCGT+GGG | + | chr4.4:900189-900208 | MS.gene040175:CDS | 45.0% |
| !!! | CCCCAGCAATTTTTTCCTTC+AGG | - | chr4.4:900878-900897 | None:intergenic | 45.0% |
| ACAGGAGTGAACTGAGATCC+AGG | - | chr4.4:900428-900447 | None:intergenic | 50.0% | |
| ACTGGAAGAGACCAGAAGAC+AGG | + | chr4.4:899682-899701 | MS.gene040175:CDS | 50.0% | |
| ACTGTATACTGCTCAGCCTC+AGG | - | chr4.4:899009-899028 | None:intergenic | 50.0% | |
| AGCGTTCACAAGAGCAAGCT+AGG | + | chr4.4:899319-899338 | MS.gene040175:CDS | 50.0% | |
| AGCTTCTCTGTCAACCCCTT+TGG | - | chr4.4:899237-899256 | None:intergenic | 50.0% | |
| AGGTCCCTGTAGAGAACAGA+TGG | - | chr4.4:900757-900776 | None:intergenic | 50.0% | |
| ATAGGCATCATCCCTGATGG+TGG | - | chr4.4:900479-900498 | None:intergenic | 50.0% | |
| ATCATGTGCATGCCTGGTCT+TGG | - | chr4.4:900272-900291 | None:intergenic | 50.0% | |
| ATGTTATGCATAGGCCCACG+GGG | - | chr4.4:900206-900225 | None:intergenic | 50.0% | |
| ATTTCCATCAGTGGGAGGAG+CGG | - | chr4.4:898533-898552 | None:intergenic | 50.0% | |
| CATGTTATGCATAGGCCCAC+GGG | - | chr4.4:900207-900226 | None:intergenic | 50.0% | |
| CCAAGATTTCCATCAGTGGG+AGG | - | chr4.4:898538-898557 | None:intergenic | 50.0% | |
| CCTCCCACTGATGGAAATCT+TGG | + | chr4.4:898535-898554 | MS.gene040175:CDS | 50.0% | |
| CGATTCTACTCTGATCCCTG+AGG | + | chr4.4:900604-900623 | MS.gene040175:CDS | 50.0% | |
| GAAGAAGATACCGTTGAGCC+AGG | + | chr4.4:899510-899529 | MS.gene040175:CDS | 50.0% | |
| GAATGAGAGATCCTCCATCG+AGG | + | chr4.4:898603-898622 | MS.gene040175:CDS | 50.0% | |
| GATGGTCACAGCGGTAGTAT+TGG | + | chr4.4:900014-900033 | MS.gene040175:CDS | 50.0% | |
| GATTGCATCATGTGCATGCC+TGG | - | chr4.4:900278-900297 | None:intergenic | 50.0% | |
| GCATGTTATGCATAGGCCCA+CGG | - | chr4.4:900208-900227 | None:intergenic | 50.0% | |
| GCCAGGGAAGGAAGTAGAAA+TGG | + | chr4.4:899527-899546 | MS.gene040175:CDS | 50.0% | |
| GGAATCAGTTCACCGGTGAT+AGG | - | chr4.4:899747-899766 | None:intergenic | 50.0% | |
| GGGAATGGATGCTGTTCGTT+TGG | + | chr4.4:899584-899603 | MS.gene040175:CDS | 50.0% | |
| GTGGAGGAATGGGAATTCCT+TGG | - | chr4.4:900403-900422 | None:intergenic | 50.0% | |
| GTGTGTGTGGCAACAGATGT+CGG | - | chr4.4:898637-898656 | None:intergenic | 50.0% | |
| TACTTCCTTCCCTGGCTCAA+CGG | - | chr4.4:899523-899542 | None:intergenic | 50.0% | |
| TCAACTCACTCAAGAGGAGG+TGG | + | chr4.4:898573-898592 | MS.gene040175:CDS | 50.0% | |
| TCAAGCACGGTAGTCATGTC+AGG | - | chr4.4:899273-899292 | None:intergenic | 50.0% | |
| TCGAGAAACCACTTTGGCAC+AGG | + | chr4.4:899851-899870 | MS.gene040175:CDS | 50.0% | |
| TGAAACTGTTGGCAGCCTGA+AGG | + | chr4.4:900860-900879 | MS.gene040175:CDS | 50.0% | |
| TTACTATCAGTTTCCGGCGC+AGG | - | chr4.4:898916-898935 | None:intergenic | 50.0% | |
| TTCAAAGCTAGTCCAGGTGG+TGG | - | chr4.4:900179-900198 | None:intergenic | 50.0% | |
| TTCGTCATCCTGTGCCAAAG+TGG | - | chr4.4:899862-899881 | None:intergenic | 50.0% | |
| TTCTCTGTCAACCCCTTTGG+AGG | - | chr4.4:899234-899253 | None:intergenic | 50.0% | |
| ! | AAGACCCTGAACCACCGATT+AGG | + | chr4.4:899649-899668 | MS.gene040175:CDS | 50.0% |
| ! | ACTGAAGGCATACCAGGTCT+TGG | - | chr4.4:900143-900162 | None:intergenic | 50.0% |
| ! | ATTGATGGATGCATTGGGGG+TGG | - | chr4.4:900368-900387 | None:intergenic | 50.0% |
| ! | CTCTTGAGTGAGTTGAGCCT+CGG | - | chr4.4:898569-898588 | None:intergenic | 50.0% |
| ! | GGACAACATTCCATGATGGG+TGG | + | chr4.4:900338-900357 | MS.gene040175:CDS | 50.0% |
| ! | TCTGCTTGTTAGCAGGGAGT+TGG | - | chr4.4:900905-900924 | None:intergenic | 50.0% |
| ! | TCTTGAGTGAGTTGAGCCTC+GGG | - | chr4.4:898568-898587 | None:intergenic | 50.0% |
| ! | TGTTTCTGCCTCTTCGGTTC+TGG | - | chr4.4:900581-900600 | None:intergenic | 50.0% |
| !! | AGAGGCCCAGCTTGTTAAAG+AGG | + | chr4.4:899563-899582 | MS.gene040175:CDS | 50.0% |
| !! | ATCATCCCTGATGGTGGATG+AGG | - | chr4.4:900473-900492 | None:intergenic | 50.0% |
| !! | CTAGCTTTGAATCTACCCCG+TGG | + | chr4.4:900188-900207 | MS.gene040175:CDS | 50.0% |
| !! | GAGGCCCAGCTTGTTAAAGA+GGG | + | chr4.4:899564-899583 | MS.gene040175:CDS | 50.0% |
| !! | GATAGGGATCGGATGGATTG+AGG | - | chr4.4:898798-898817 | None:intergenic | 50.0% |
| !! | TCATCCCTGATGGTGGATGA+GGG | - | chr4.4:900472-900491 | None:intergenic | 50.0% |
| AAATCTTGGTCCTCTCCCCG+AGG | + | chr4.4:898549-898568 | MS.gene040175:CDS | 55.0% | |
| ACCACGCTCTCTCAAGGCTA+GGG | - | chr4.4:901006-901025 | None:intergenic | 55.0% | |
| ACCTGGGGATTCTGCTCTAC+TGG | + | chr4.4:898879-898898 | MS.gene040175:CDS | 55.0% | |
| ACTCACTCAAGAGGAGGTGG+AGG | + | chr4.4:898576-898595 | MS.gene040175:CDS | 55.0% | |
| AGATACCGTTGAGCCAGGGA+AGG | + | chr4.4:899515-899534 | MS.gene040175:CDS | 55.0% | |
| ATTCCCATTCCTCCACCACC+TGG | + | chr4.4:900407-900426 | MS.gene040175:CDS | 55.0% | |
| CAGAGGAACCAGAACCGAAG+AGG | + | chr4.4:900570-900589 | MS.gene040175:CDS | 55.0% | |
| CATCTGCATTGGAGGAGGAG+GGG | - | chr4.4:900312-900331 | None:intergenic | 55.0% | |
| CGAGGCTCAACTCACTCAAG+AGG | + | chr4.4:898567-898586 | MS.gene040175:CDS | 55.0% | |
| CTCACCCTCATCCACCATCA+GGG | + | chr4.4:900465-900484 | MS.gene040175:CDS | 55.0% | |
| GCATCTGCATTGGAGGAGGA+GGG | - | chr4.4:900313-900332 | None:intergenic | 55.0% | |
| GGAGCATAAGGTCGTGGAAC+AGG | - | chr4.4:900446-900465 | None:intergenic | 55.0% | |
| GGAGTGAACTGAGATCCAGG+TGG | - | chr4.4:900425-900444 | None:intergenic | 55.0% | |
| GGCTCAACTCACTCAAGAGG+AGG | + | chr4.4:898570-898589 | MS.gene040175:CDS | 55.0% | |
| GTATACTGCTCAGCCTCAGG+AGG | - | chr4.4:899006-899025 | None:intergenic | 55.0% | |
| GTGAACTGAGATCCAGGTGG+TGG | - | chr4.4:900422-900441 | None:intergenic | 55.0% | |
| GTTCTCTACAGGGACCTGCT+CGG | + | chr4.4:900760-900779 | MS.gene040175:intron | 55.0% | |
| TCCAGTAGAGCAGAATCCCC+AGG | - | chr4.4:898883-898902 | None:intergenic | 55.0% | |
| TCCTCCCCTGTAATGCCTTC+AGG | - | chr4.4:899039-899058 | None:intergenic | 55.0% | |
| TCTACCACCACGCTCTCTCA+AGG | - | chr4.4:901012-901031 | None:intergenic | 55.0% | |
| TCTGCAGGAAGCCTGTCTTC+TGG | - | chr4.4:899696-899715 | None:intergenic | 55.0% | |
| TGTCCACCAGGCATCTGCAT+TGG | - | chr4.4:900323-900342 | None:intergenic | 55.0% | |
| TTCTGGCCCAACATCCGGTA+TGG | + | chr4.4:900633-900652 | MS.gene040175:intron | 55.0% | |
| TTTCCATCAGTGGGAGGAGC+GGG | - | chr4.4:898532-898551 | None:intergenic | 55.0% | |
| ! | AAAGCTAGTCCAGGTGGTGG+CGG | - | chr4.4:900176-900195 | None:intergenic | 55.0% |
| ! | AACTGAGATCCAGGTGGTGG+AGG | - | chr4.4:900419-900438 | None:intergenic | 55.0% |
| ! | CTTGAGTGAGTTGAGCCTCG+GGG | - | chr4.4:898567-898586 | None:intergenic | 55.0% |
| ! | GAAGGCATACCAGGTCTTGG+AGG | - | chr4.4:900140-900159 | None:intergenic | 55.0% |
| ! | GGACGAACTGAAGGCATACC+AGG | - | chr4.4:900149-900168 | None:intergenic | 55.0% |
| ! | GGATGAGGGTGAGGAGCATA+AGG | - | chr4.4:900458-900477 | None:intergenic | 55.0% |
| !! | AGATCCAGGTGGTGGAGGAA+TGG | - | chr4.4:900414-900433 | None:intergenic | 55.0% |
| !! | AGGCTGCCTGAAGGCATTAC+AGG | + | chr4.4:899030-899049 | MS.gene040175:CDS | 55.0% |
| !! | ATGTGCATGCCTGGTCTTGG+TGG | - | chr4.4:900269-900288 | None:intergenic | 55.0% |
| !! | CTCTTCGGTTCTGGTTCCTC+TGG | - | chr4.4:900572-900591 | None:intergenic | 55.0% |
| !! | GATCCAGGTGGTGGAGGAAT+GGG | - | chr4.4:900413-900432 | None:intergenic | 55.0% |
| !! | GCTGCCTGAAGGCATTACAG+GGG | + | chr4.4:899032-899051 | MS.gene040175:CDS | 55.0% |
| !! | GGAGGTGGTGGATGCATCAT+AGG | - | chr4.4:900497-900516 | None:intergenic | 55.0% |
| !! | GGCTGCCTGAAGGCATTACA+GGG | + | chr4.4:899031-899050 | MS.gene040175:CDS | 55.0% |
| !! | GGTTCTGGTTCCTCTGGAAG+CGG | - | chr4.4:900566-900585 | None:intergenic | 55.0% |
| !! | GTTCTGGTTCCTCTGGAAGC+GGG | - | chr4.4:900565-900584 | None:intergenic | 55.0% |
| !! | TTCTGGTTCCTCTGGAAGCG+GGG | - | chr4.4:900564-900583 | None:intergenic | 55.0% |
| ACCTCCTCAAGGGTCATCGG+AGG | - | chr4.4:899462-899481 | None:intergenic | 60.0% | |
| ACCTCCTCCGATGACCCTTG+AGG | + | chr4.4:899455-899474 | MS.gene040175:CDS | 60.0% | |
| AGGCATTACAGGGGAGGAGC+TGG | + | chr4.4:899041-899060 | MS.gene040175:CDS | 60.0% | |
| CACCACGCTCTCTCAAGGCT+AGG | - | chr4.4:901007-901026 | None:intergenic | 60.0% | |
| CCACCAGGCATCTGCATTGG+AGG | - | chr4.4:900320-900339 | None:intergenic | 60.0% | |
| CCAGGCATCTGCATTGGAGG+AGG | - | chr4.4:900317-900336 | None:intergenic | 60.0% | |
| CCTCACCCTCATCCACCATC+AGG | + | chr4.4:900464-900483 | MS.gene040175:CDS | 60.0% | |
| CCTCCAATGCAGATGCCTGG+TGG | + | chr4.4:900317-900336 | MS.gene040175:CDS | 60.0% | |
| CCTCCTCCAATGCAGATGCC+TGG | + | chr4.4:900314-900333 | MS.gene040175:CDS | 60.0% | |
| CTATCAGTTTCCGGCGCAGG+TGG | - | chr4.4:898913-898932 | None:intergenic | 60.0% | |
| CTCAAGAGGAGGTGGAGGAG+AGG | + | chr4.4:898581-898600 | MS.gene040175:CDS | 60.0% | |
| GAGAGGCAAGATGACGCCCA+TGG | + | chr4.4:899488-899507 | MS.gene040175:CDS | 60.0% | |
| GGAGCGGGTAGAGGCAGTAT+AGG | - | chr4.4:898517-898536 | None:intergenic | 60.0% | |
| GGCATACCAGGTCTTGGAGG+AGG | - | chr4.4:900137-900156 | None:intergenic | 60.0% | |
| GGCATCTGCATTGGAGGAGG+AGG | - | chr4.4:900314-900333 | None:intergenic | 60.0% | |
| GGCGGAAGAGGACGAACTGA+AGG | - | chr4.4:900158-900177 | None:intergenic | 60.0% | |
| GGGTGGTTGACCACCCATCA+TGG | - | chr4.4:900351-900370 | None:intergenic | 60.0% | |
| TCCTCAAGGGTCATCGGAGG+AGG | - | chr4.4:899459-899478 | None:intergenic | 60.0% | |
| TCCTCCGATGACCCTTGAGG+AGG | + | chr4.4:899458-899477 | MS.gene040175:CDS | 60.0% | |
| ! | GGGTGAGGAGCATAAGGTCG+TGG | - | chr4.4:900452-900471 | None:intergenic | 60.0% |
| ! | TCTGGTTCCTCTGGAAGCGG+GGG | - | chr4.4:900563-900582 | None:intergenic | 60.0% |
| !! | CCTGATGGTGGATGAGGGTG+AGG | - | chr4.4:900467-900486 | None:intergenic | 60.0% |
| !! | CCTGGTCTTGGTGGAGGCAT+CGG | - | chr4.4:900260-900279 | None:intergenic | 60.0% |
| !! | CTAGCCTTGAGAGAGCGTGG+TGG | + | chr4.4:901005-901024 | MS.gene040175:CDS | 60.0% |
| !! | GCCTGAAGGCATTACAGGGG+AGG | + | chr4.4:899035-899054 | MS.gene040175:CDS | 60.0% |
| !! | GTCTTGGTGGAGGCATCGGA+AGG | - | chr4.4:900256-900275 | None:intergenic | 60.0% |
| !! | TCCCTAGCCTTGAGAGAGCG+TGG | + | chr4.4:901002-901021 | MS.gene040175:CDS | 60.0% |
| !! | TGCATGCCTGGTCTTGGTGG+AGG | - | chr4.4:900266-900285 | None:intergenic | 60.0% |
| !! | TGTCGGTGCTGCTTCCTCGA+TGG | - | chr4.4:898620-898639 | None:intergenic | 60.0% |
| ACTCCTTGAGGCGGAGGTGG+TGG | - | chr4.4:900509-900528 | None:intergenic | 65.0% | |
| CATCCACCACCTCCGCCTCA+AGG | + | chr4.4:900503-900522 | MS.gene040175:CDS | 65.0% | |
| CCGATGCCTCCACCAAGACC+AGG | + | chr4.4:900257-900276 | MS.gene040175:CDS | 65.0% | |
| CTACCCGCTCCTCCCACTGA+TGG | + | chr4.4:898526-898545 | MS.gene040175:CDS | 65.0% | |
| GCTGCACCTCCTCCAAGACC+TGG | + | chr4.4:900128-900147 | MS.gene040175:CDS | 65.0% | |
| GGAATCAGCTCCACCTGCGC+CGG | + | chr4.4:898900-898919 | MS.gene040175:CDS | 65.0% | |
| GGAGGAGCTTCCTCAGGTGG+CGG | - | chr4.4:900542-900561 | None:intergenic | 65.0% | |
| TCAGTGGGAGGAGCGGGTAG+AGG | - | chr4.4:898526-898545 | None:intergenic | 65.0% | |
| TGCATTGGAGGAGGAGGGGC+TGG | - | chr4.4:900308-900327 | None:intergenic | 65.0% | |
| ! | GAGGAGGTGCAGCAGGACCA+GGG | - | chr4.4:900121-900140 | None:intergenic | 65.0% |
| ! | GGTCTTGGAGGAGGTGCAGC+AGG | - | chr4.4:900128-900147 | None:intergenic | 65.0% |
| ! | GTGAGTTGAGCCTCGGGGAG+AGG | - | chr4.4:898562-898581 | None:intergenic | 65.0% |
| !! | AGTCCAGGTGGTGGCGGAAG+AGG | - | chr4.4:900170-900189 | None:intergenic | 65.0% |
| !! | CGGTGCTGCTTCCTCGATGG+AGG | - | chr4.4:898617-898636 | None:intergenic | 65.0% |
| AGCGGGGGAGGAGCTTCCTC+AGG | - | chr4.4:900548-900567 | None:intergenic | 70.0% | |
| AGCTCCTCCCCCGCTTCCAG+AGG | + | chr4.4:900553-900572 | MS.gene040175:CDS | 70.0% | |
| CGTCCTCTTCCGCCACCACC+TGG | + | chr4.4:900164-900183 | MS.gene040175:CDS | 70.0% | |
| GAGGTGCAGCAGGACCAGGG+AGG | - | chr4.4:900118-900137 | None:intergenic | 70.0% | |
| GGCACTCCTTGAGGCGGAGG+TGG | - | chr4.4:900512-900531 | None:intergenic | 70.0% | |
| GGGGGAGGAGCTTCCTCAGG+TGG | - | chr4.4:900545-900564 | None:intergenic | 70.0% | |
| ! | CTTCCTCAGGTGGCGGCGGT+GGG | - | chr4.4:900535-900554 | None:intergenic | 70.0% |
| ! | GGAGCTTCCTCAGGTGGCGG+CGG | - | chr4.4:900539-900558 | None:intergenic | 70.0% |
| ! | GGAGGAGGTGCAGCAGGACC+AGG | - | chr4.4:900122-900141 | None:intergenic | 70.0% |
| ! | GGTTCCTCTGGAAGCGGGGG+AGG | - | chr4.4:900560-900579 | None:intergenic | 70.0% |
| ! | TTCCTCAGGTGGCGGCGGTG+GGG | - | chr4.4:900534-900553 | None:intergenic | 70.0% |
| ! | TTGGAGGAGGAGGGGCTGGC+CGG | - | chr4.4:900304-900323 | None:intergenic | 70.0% |
| !! | GGTGGGGGCACTCCTTGAGG+CGG | - | chr4.4:900518-900537 | None:intergenic | 70.0% |
| ! | GCTTCCTCAGGTGGCGGCGG+TGG | - | chr4.4:900536-900555 | None:intergenic | 75.0% |
| ! | TCCTCAGGTGGCGGCGGTGG+GGG | - | chr4.4:900533-900552 | None:intergenic | 75.0% |
| !! | GGCGGTGGGGGCACTCCTTG+AGG | - | chr4.4:900521-900540 | None:intergenic | 75.0% |
| !! | GGGGGCACTCCTTGAGGCGG+AGG | - | chr4.4:900515-900534 | None:intergenic | 75.0% |
| ! | GCCCCCACCGCCGCCACCTG+AGG | + | chr4.4:900529-900548 | MS.gene040175:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 898499 | 901040 | 898499 | ID=MS.gene040175 |
| chr4.4 | mRNA | 898499 | 901040 | 898499 | ID=MS.gene040175.t1;Parent=MS.gene040175 |
| chr4.4 | exon | 898499 | 900649 | 898499 | ID=MS.gene040175.t1.exon1;Parent=MS.gene040175.t1 |
| chr4.4 | CDS | 898499 | 900649 | 898499 | ID=cds.MS.gene040175.t1;Parent=MS.gene040175.t1 |
| chr4.4 | exon | 900771 | 901040 | 900771 | ID=MS.gene040175.t1.exon2;Parent=MS.gene040175.t1 |
| chr4.4 | CDS | 900771 | 901040 | 900771 | ID=cds.MS.gene040175.t1;Parent=MS.gene040175.t1 |
| Gene Sequence |
| Protein sequence |
