Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057666.t1 | XP_003607201.2 | 88.3 | 909 | 100 | 1 | 57 | 965 | 57 | 959 | 0.00E+00 | 1313.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057666.t1 | Q9LT25 | 53.8 | 840 | 313 | 18 | 111 | 942 | 60 | 832 | 3.0e-187 | 657.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057666.t1 | G7JNF7 | 88.3 | 909 | 100 | 1 | 57 | 965 | 57 | 959 | 0.0e+00 | 1313.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene057666 | MS.gene20758 | PPI |
| MS.gene057666 | MS.gene025725 | PPI |
| MS.gene057666 | MS.gene89296 | PPI |
| MS.gene057666 | MS.gene07236 | PPI |
| MS.gene057666 | MS.gene46089 | PPI |
| MS.gene62648 | MS.gene057666 | PPI |
| MS.gene057666 | MS.gene89818 | PPI |
| MS.gene89294 | MS.gene057666 | PPI |
| MS.gene057666 | MS.gene040175 | PPI |
| MS.gene057666 | MS.gene063673 | PPI |
| MS.gene057666 | MS.gene025726 | PPI |
| MS.gene057666 | MS.gene015612 | PPI |
| MS.gene057666 | MS.gene005567 | PPI |
| MS.gene057666 | MS.gene055184 | PPI |
| MS.gene057666 | MS.gene22969 | PPI |
| MS.gene057666 | MS.gene055186 | PPI |
| MS.gene95860 | MS.gene057666 | PPI |
| MS.gene057666 | MS.gene89820 | PPI |
| MS.gene057666 | MS.gene06988 | PPI |
| MS.gene057666 | MS.gene67503 | PPI |
| MS.gene057666 | MS.gene64820 | PPI |
| MS.gene057666 | MS.gene67685 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057666.t1 | MTR_4g074440 | 93.802 | 968 | 48 | 5 | 1 | 965 | 1 | 959 | 0.0 | 1692 |
| MS.gene057666.t1 | MTR_4g074440 | 91.533 | 685 | 46 | 5 | 1 | 682 | 1 | 676 | 0.0 | 1152 |
| MS.gene057666.t1 | MTR_1g017520 | 25.266 | 752 | 424 | 24 | 181 | 876 | 106 | 775 | 9.14e-39 | 157 |
| MS.gene057666.t1 | MTR_1g106025 | 25.336 | 521 | 313 | 15 | 277 | 752 | 164 | 653 | 3.21e-30 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057666.t1 | AT3G19840 | 54.394 | 842 | 309 | 18 | 111 | 944 | 60 | 834 | 0.0 | 749 |
| MS.gene057666.t1 | AT1G44910 | 28.802 | 434 | 250 | 14 | 343 | 749 | 190 | 591 | 5.82e-37 | 150 |
| MS.gene057666.t1 | AT1G44910 | 28.802 | 434 | 250 | 14 | 343 | 749 | 190 | 591 | 1.03e-36 | 150 |
| MS.gene057666.t1 | AT3G19670 | 27.594 | 453 | 270 | 15 | 340 | 752 | 187 | 621 | 7.83e-26 | 115 |
| MS.gene057666.t1 | AT3G19670 | 27.594 | 453 | 270 | 15 | 340 | 752 | 206 | 640 | 7.99e-26 | 115 |
| MS.gene057666.t1 | AT3G19670 | 27.594 | 453 | 270 | 15 | 340 | 752 | 206 | 640 | 7.99e-26 | 115 |
| MS.gene057666.t1 | AT3G19670 | 27.594 | 453 | 270 | 15 | 340 | 752 | 206 | 640 | 7.99e-26 | 115 |
Find 268 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAACCTGCTGGCTTTAA+AGG | 0.103135 | 4.4:-34970930 | MS.gene057666:CDS |
| ACTATCGCCCAACTACTTTA+TGG | 0.163328 | 4.4:-34971681 | MS.gene057666:CDS |
| TCTTCAGTGGCTTTCTTTAA+AGG | 0.171523 | 4.4:+34963102 | None:intergenic |
| TCAGACAATACAGTAGTATT+TGG | 0.190956 | 4.4:+34967665 | None:intergenic |
| GGAGGGTTGACAGCCGAATT+AGG | 0.218520 | 4.4:+34973388 | None:intergenic |
| CAACAAAATGTTAACGCTTC+TGG | 0.226037 | 4.4:-34973534 | MS.gene057666:CDS |
| GGGAGCGAGAGCTGCGTAAA+AGG | 0.255583 | 4.4:-34960809 | MS.gene057666:CDS |
| CTTGGAACCTTGTTATATCT+TGG | 0.278928 | 4.4:+34959607 | None:intergenic |
| GCACTTTGGGGAAAATTATA+TGG | 0.279385 | 4.4:+34973307 | None:intergenic |
| AAAGTAGTTGGGCGATAGTT+AGG | 0.309852 | 4.4:+34971685 | None:intergenic |
| AACGAGAGACCAGAGCTAAA+AGG | 0.310860 | 4.4:-34961269 | MS.gene057666:CDS |
| GAAGAAGAAGATGATGGAAT+AGG | 0.319686 | 4.4:+34973695 | None:intergenic |
| TTGCTCCACCTCAGGGATAT+TGG | 0.327307 | 4.4:-34971432 | MS.gene057666:CDS |
| CGAGGATCAAATACTATCTT+TGG | 0.331317 | 4.4:+34965452 | None:intergenic |
| AAAAGCTGGCGGCGCACTTT+GGG | 0.332039 | 4.4:+34973294 | None:intergenic |
| CTAGGAGTTCCGGGCATTAC+AGG | 0.339967 | 4.4:+34971628 | None:intergenic |
| AACAAAATGTTAACGCTTCT+GGG | 0.340217 | 4.4:-34973533 | MS.gene057666:CDS |
| AATGAAGGGGCAGCTGGACG+TGG | 0.342313 | 4.4:+34973331 | None:intergenic |
| ACCGGGAGTACTAGGAGTTC+CGG | 0.345684 | 4.4:+34971618 | None:intergenic |
| CCCTGATTCCAATGGATGTT+TGG | 0.347086 | 4.4:+34959462 | None:intergenic |
| CTAGGAACTTACATTGAAAC+TGG | 0.351863 | 4.4:+34970496 | None:intergenic |
| ATAAACCTGCTGGCTTTAAA+GGG | 0.355108 | 4.4:-34970929 | MS.gene057666:CDS |
| AAATCTTGTGTGGCGGAATC+AGG | 0.355244 | 4.4:+34971790 | None:intergenic |
| TTCAATTCCGCCACCTCATT+GGG | 0.357442 | 4.4:+34967734 | None:intergenic |
| TCCAAACATCCATTGGAATC+AGG | 0.357482 | 4.4:-34959463 | MS.gene057666:CDS |
| TAAAAGCTGGCGGCGCACTT+TGG | 0.358326 | 4.4:+34973293 | None:intergenic |
| TTTCAATTCCGCCACCTCAT+TGG | 0.363697 | 4.4:+34967733 | None:intergenic |
| AAGAAGAAGTTGCAGGAATC+AGG | 0.365897 | 4.4:-34967527 | MS.gene057666:CDS |
| GGAAAGAGAAGAACATGAAA+TGG | 0.366620 | 4.4:-34960784 | MS.gene057666:CDS |
| TGATTCACGGTTTGAGGCAT+TGG | 0.369933 | 4.4:-34964938 | MS.gene057666:CDS |
| TTTATGCACTCCTCCTTTGA+AGG | 0.371786 | 4.4:+34967314 | None:intergenic |
| GGAGTGCATAAATCAATTTA+AGG | 0.377125 | 4.4:-34967303 | MS.gene057666:intron |
| GAGGGTTGACAGCCGAATTA+GGG | 0.385234 | 4.4:+34973389 | None:intergenic |
| TGTTTCACAGATTTATATCT+CGG | 0.392372 | 4.4:+34961357 | None:intergenic |
| ATCCATGGTTGCTCCACCTC+AGG | 0.393076 | 4.4:-34971440 | MS.gene057666:CDS |
| TACTATTATAATGCTTTGAC+AGG | 0.395407 | 4.4:-34970966 | MS.gene057666:CDS |
| CAGGATGGACGGGAAAAGTT+GGG | 0.396058 | 4.4:+34971647 | None:intergenic |
| GGCATTGGACCGCAAGGAAC+GGG | 0.399005 | 4.4:-34964923 | MS.gene057666:CDS |
| AATGGAGGTTGAGCAGGAAT+AGG | 0.399167 | 4.4:+34973367 | None:intergenic |
| GAACCATTTGATTCGGATCC+TGG | 0.400634 | 4.4:+34967461 | None:intergenic |
| AAGAAGAAGATGATGGAATA+GGG | 0.406202 | 4.4:+34973696 | None:intergenic |
| AGCTGAATCAAGATCAGAAT+TGG | 0.409415 | 4.4:+34960024 | None:intergenic |
| GCAGCAGGATATTGATGAAA+TGG | 0.411046 | 4.4:+34971373 | None:intergenic |
| GACTTCTGAAGCCGCGTCTC+AGG | 0.411196 | 4.4:-34959695 | MS.gene057666:CDS |
| CTTTCAACTCTCGTTGGTCC+AGG | 0.414381 | 4.4:-34963008 | MS.gene057666:CDS |
| ACACCAGGAGGTTGAGAATC+AGG | 0.415316 | 4.4:+34971292 | None:intergenic |
| CATCTGCTGAGGGGAACATC+TGG | 0.424887 | 4.4:-34971223 | MS.gene057666:CDS |
| GAAGGGGCAGCTGGACGTGG+GGG | 0.427000 | 4.4:+34973334 | None:intergenic |
| GCATATATTCTTAGGCATCA+TGG | 0.428010 | 4.4:-34960093 | MS.gene057666:intron |
| CAGACAATACAGTAGTATTT+GGG | 0.428630 | 4.4:+34967666 | None:intergenic |
| TGGTGAGCTTTGTACGATAG+AGG | 0.431267 | 4.4:+34967568 | None:intergenic |
| GGAATAGAAGAGGATGTAAC+AGG | 0.431810 | 4.4:+34967500 | None:intergenic |
| GGGAAATGATTCACGGTTTG+AGG | 0.433155 | 4.4:-34964944 | MS.gene057666:CDS |
| CGCAGGACAAGCTGCGGGAG+AGG | 0.437446 | 4.4:-34960830 | MS.gene057666:intron |
| TGAAGGGGCAGCTGGACGTG+GGG | 0.437614 | 4.4:+34973333 | None:intergenic |
| TCTTTCTCCCACTTTGAGAA+TGG | 0.438000 | 4.4:+34965479 | None:intergenic |
| GCAGGGGATGAACCCTAATT+CGG | 0.438054 | 4.4:-34973401 | MS.gene057666:intron |
| GGAAAACCTGTGCTTGTAGA+TGG | 0.438272 | 4.4:+34971547 | None:intergenic |
| TTTGATCAAGAAGAAGTTGC+AGG | 0.440037 | 4.4:-34967534 | MS.gene057666:CDS |
| CAGAGCTAAAAGGGAGGAGC+AGG | 0.441328 | 4.4:-34961259 | MS.gene057666:intron |
| TATTGTAGGGTAGATTTGCC+TGG | 0.442537 | 4.4:-34969524 | MS.gene057666:intron |
| CATGGATGGTATGGGTGGAT+AGG | 0.443598 | 4.4:+34971456 | None:intergenic |
| GGATCATGTAAAGATGCTTC+AGG | 0.444198 | 4.4:-34959981 | MS.gene057666:CDS |
| GGAAAACAGTGCTTAATTCA+TGG | 0.444271 | 4.4:-34959660 | MS.gene057666:CDS |
| ACCACGTGCTGGAAATGAAA+AGG | 0.444633 | 4.4:+34971339 | None:intergenic |
| GTATTGTCTGAGAGAGGGTC+TGG | 0.444793 | 4.4:-34967653 | MS.gene057666:CDS |
| TAGATTTGCCTGGTACTGAT+TGG | 0.446942 | 4.4:-34969514 | MS.gene057666:CDS |
| TGCACAAAAGGCCGCAATTG+AGG | 0.448302 | 4.4:-34965156 | MS.gene057666:CDS |
| ACAGGATGGACGGGAAAAGT+TGG | 0.450966 | 4.4:+34971646 | None:intergenic |
| ACGAGAGACCAGAGCTAAAA+GGG | 0.452784 | 4.4:-34961268 | MS.gene057666:CDS |
| GCACAAAAGGCCGCAATTGA+GGG | 0.453511 | 4.4:-34965155 | MS.gene057666:CDS |
| TGGAGCAACCATGGATGGTA+TGG | 0.453607 | 4.4:+34971447 | None:intergenic |
| AGCAGCGGGAGCAGAAATGC+TGG | 0.457214 | 4.4:+34971252 | None:intergenic |
| GGAAAATTATATGGAAATGA+AGG | 0.457756 | 4.4:+34973316 | None:intergenic |
| CCACGTGCTGGAAATGAAAA+GGG | 0.462872 | 4.4:+34971340 | None:intergenic |
| GGAGGTTGAGCAGGAATAGG+AGG | 0.463244 | 4.4:+34973370 | None:intergenic |
| CTCTAGAGACTTTCTACCTC+TGG | 0.463701 | 4.4:+34959489 | None:intergenic |
| GATTCAGAAGACGAGGATAG+TGG | 0.464902 | 4.4:-34967338 | MS.gene057666:CDS |
| TGTTCCCCTCAGCAGATGAC+TGG | 0.465491 | 4.4:+34971228 | None:intergenic |
| AAGCCTCTATGTGAGGCATT+AGG | 0.468749 | 4.4:+34971481 | None:intergenic |
| CCCGTCCATCCTGTAATGCC+CGG | 0.470449 | 4.4:-34971637 | MS.gene057666:CDS |
| TCGGATCCTGGTTGCACTGA+TGG | 0.472882 | 4.4:+34967473 | None:intergenic |
| TGGGCGGCGTAAGAGATTGA+TGG | 0.475229 | 4.4:+34973555 | None:intergenic |
| ACCTCCCCTTTAAAGCCAGC+AGG | 0.476497 | 4.4:+34970924 | None:intergenic |
| ATCTGTGAAACATGAGGATA+GGG | 0.476617 | 4.4:-34961346 | MS.gene057666:CDS |
| CCGGGAGTACTAGGAGTTCC+GGG | 0.479194 | 4.4:+34971619 | None:intergenic |
| ACGGGAAAAGTTGGGGCAGT+TGG | 0.480355 | 4.4:+34971655 | None:intergenic |
| GAAATGCTGGCAGCACCAAC+AGG | 0.482497 | 4.4:+34971265 | None:intergenic |
| AAGGGGCAGCTGGACGTGGG+GGG | 0.482647 | 4.4:+34973335 | None:intergenic |
| TATGGAAATGAAGGGGCAGC+TGG | 0.483556 | 4.4:+34973325 | None:intergenic |
| GCCTGGTACTGATTGGCAGT+TGG | 0.484186 | 4.4:-34969507 | MS.gene057666:CDS |
| GTTTCACAGATTTATATCTC+GGG | 0.486215 | 4.4:+34961358 | None:intergenic |
| CAATCCCTGCTTCAGTCTTG+TGG | 0.487147 | 4.4:+34970991 | None:intergenic |
| GCTGGAAATGAAAAGGGGCC+AGG | 0.489782 | 4.4:+34971346 | None:intergenic |
| CAGGCTCTTGGCTGTAGAGT+CGG | 0.490013 | 4.4:+34967430 | None:intergenic |
| TGCAGCTCCTGCATCATCAC+CGG | 0.490119 | 4.4:-34973580 | MS.gene057666:intron |
| ATAGAAGTAGGAGCAGGAAC+AGG | 0.491114 | 4.4:+34971733 | None:intergenic |
| AATCCCTGCTTCAGTCTTGT+GGG | 0.491851 | 4.4:+34970992 | None:intergenic |
| ATGGATGGTATGGGTGGATA+GGG | 0.495281 | 4.4:+34971457 | None:intergenic |
| AGCATCTAGCTGATCATTAG+CGG | 0.495789 | 4.4:+34971022 | None:intergenic |
| TGCGATCTCCCTGATTCCAA+TGG | 0.496991 | 4.4:+34959454 | None:intergenic |
| GAAGTAATTTCAGCACATAC+TGG | 0.497178 | 4.4:-34971190 | MS.gene057666:intron |
| AATCTGTGAAACATGAGGAT+AGG | 0.498829 | 4.4:-34961347 | MS.gene057666:CDS |
| GTATGAAATGGAGGTTGAGC+AGG | 0.499181 | 4.4:+34973361 | None:intergenic |
| GTTGGCATCCATAAAGTAGT+TGG | 0.499359 | 4.4:+34971673 | None:intergenic |
| AGAGTCTTCCAAACATCCAT+TGG | 0.500125 | 4.4:-34959470 | MS.gene057666:CDS |
| TGCTTCCAGTCATCTGCTGA+GGG | 0.501155 | 4.4:-34971233 | MS.gene057666:CDS |
| GATCTCCTAGCAGAATAGCT+AGG | 0.504237 | 4.4:+34965236 | None:intergenic |
| ATGAAGGGGCAGCTGGACGT+GGG | 0.505446 | 4.4:+34973332 | None:intergenic |
| ACAAAGCTCACCATCGGCAC+TGG | 0.505649 | 4.4:-34967558 | MS.gene057666:CDS |
| GTTTCAGCAGCAGAGGGAGG+TGG | 0.506523 | 4.4:+34973734 | None:intergenic |
| CCTCCTGGTGTTACTCCTGT+TGG | 0.507077 | 4.4:-34971280 | MS.gene057666:CDS |
| CCAAACATCCATTGGAATCA+GGG | 0.507489 | 4.4:-34959462 | MS.gene057666:CDS |
| GAATCAGGTACTGGAACAGC+AGG | 0.507999 | 4.4:+34971307 | None:intergenic |
| ATAGAGAAGCCTTGTGGCGC+CGG | 0.508501 | 4.4:-34959579 | MS.gene057666:CDS |
| GGGAGTGCACCACCACGTGC+TGG | 0.511437 | 4.4:+34971328 | None:intergenic |
| ACTGCCCACAAGACTGAAGC+AGG | 0.511530 | 4.4:-34970996 | MS.gene057666:CDS |
| GAGAAGAACATGAAATGGAA+AGG | 0.513731 | 4.4:-34960779 | MS.gene057666:CDS |
| AGATGGAGCAGCTGGATTGA+AGG | 0.515930 | 4.4:+34971564 | None:intergenic |
| CTAATGATCAGCTAGATGCT+TGG | 0.516038 | 4.4:-34971019 | MS.gene057666:CDS |
| TGATCTTGATTCAGCTGACA+TGG | 0.519037 | 4.4:-34960017 | MS.gene057666:CDS |
| GATGGAGCAGCTGGATTGAA+GGG | 0.520281 | 4.4:+34971565 | None:intergenic |
| CGAGGATAGTGGGCCTTCAA+AGG | 0.520405 | 4.4:-34967327 | MS.gene057666:CDS |
| CAGTTGGTCTCTACTAGTGA+TGG | 0.521306 | 4.4:-34969491 | MS.gene057666:CDS |
| AAGTAGTTGGGCGATAGTTA+GGG | 0.521359 | 4.4:+34971686 | None:intergenic |
| GTAGTATTTGGGACGGGCGT+TGG | 0.521758 | 4.4:+34967677 | None:intergenic |
| GGATTGAAGGGTAATATCAC+AGG | 0.523428 | 4.4:+34971577 | None:intergenic |
| CAACCAGGATCCGAATCAAA+TGG | 0.524617 | 4.4:-34967464 | MS.gene057666:CDS |
| GAATCATATCCTCTGCATAC+CGG | 0.525933 | 4.4:+34959560 | None:intergenic |
| TTGGCATCCATAAAGTAGTT+GGG | 0.527790 | 4.4:+34971674 | None:intergenic |
| TGTTGGTTCGCAGTAAAAGC+TGG | 0.528468 | 4.4:+34973280 | None:intergenic |
| GTACCTGATTCTCAACCTCC+TGG | 0.528552 | 4.4:-34971295 | MS.gene057666:CDS |
| GTGCTTGTAGATGGAGCAGC+TGG | 0.528608 | 4.4:+34971556 | None:intergenic |
| CTGCTTCCAGTCATCTGCTG+AGG | 0.530922 | 4.4:-34971234 | MS.gene057666:CDS |
| AAAATCATCTCATGATTCAA+AGG | 0.532449 | 4.4:-34959530 | MS.gene057666:CDS |
| AGAAGATGATGGAATAGGGA+TGG | 0.536854 | 4.4:+34973700 | None:intergenic |
| AGCAGATGACTGGAAGCAGC+GGG | 0.541855 | 4.4:+34971238 | None:intergenic |
| GGAGAGAATCAAAGACCCTA+TGG | 0.543294 | 4.4:-34960700 | MS.gene057666:intron |
| AATGGTTACTCTGAATGCTC+CGG | 0.543813 | 4.4:-34967630 | MS.gene057666:CDS |
| GCAGGACAAGCTGCGGGAGA+GGG | 0.545405 | 4.4:-34960829 | MS.gene057666:intron |
| CTCTGCATACCGGCGCCACA+AGG | 0.546986 | 4.4:+34959570 | None:intergenic |
| GAGGTTGAGCAGGAATAGGA+GGG | 0.547528 | 4.4:+34973371 | None:intergenic |
| TCAACATATGATAAACCTGC+TGG | 0.549166 | 4.4:-34970939 | MS.gene057666:CDS |
| GGCGTTGTTTCAGCAGCAGA+GGG | 0.549258 | 4.4:+34973728 | None:intergenic |
| AATGCTCCGGCTATTACCAC+TGG | 0.549560 | 4.4:-34967617 | MS.gene057666:CDS |
| GAATTGGTTGCACGCCCTTG+AGG | 0.549986 | 4.4:+34960040 | None:intergenic |
| CAGTGTTAGATTGCCTGTGT+TGG | 0.550015 | 4.4:+34973263 | None:intergenic |
| TTGTCTCGGTACTGCAGCTG+AGG | 0.550217 | 4.4:+34971525 | None:intergenic |
| AGAAGAACATGAAATGGAAA+GGG | 0.550807 | 4.4:-34960778 | MS.gene057666:CDS |
| GCATTAGGATCTGATGCAGT+TGG | 0.551297 | 4.4:+34971496 | None:intergenic |
| GGTGAGCTTTGTACGATAGA+GGG | 0.552025 | 4.4:+34967569 | None:intergenic |
| TCCGGGCATTACAGGATGGA+CGG | 0.554977 | 4.4:+34971636 | None:intergenic |
| AGAAATGGGGAAATGATTCA+CGG | 0.555164 | 4.4:-34964951 | MS.gene057666:CDS |
| CCGGGCATTACAGGATGGAC+GGG | 0.555217 | 4.4:+34971637 | None:intergenic |
| AAATAACTTTCAACTCTCGT+TGG | 0.555691 | 4.4:-34963014 | MS.gene057666:CDS |
| AGGCGTTGTTTCAGCAGCAG+AGG | 0.556062 | 4.4:+34973727 | None:intergenic |
| ATCTCCTAGCAGAATAGCTA+GGG | 0.556877 | 4.4:+34965237 | None:intergenic |
| TTTCAACTCTCGTTGGTCCA+GGG | 0.557412 | 4.4:-34963007 | MS.gene057666:intron |
| GGAGGTTGAGAATCAGGTAC+TGG | 0.557933 | 4.4:+34971298 | None:intergenic |
| GATCCTAATGCCTCACATAG+AGG | 0.558216 | 4.4:-34971484 | MS.gene057666:CDS |
| GAAAATTATATGGAAATGAA+GGG | 0.559298 | 4.4:+34973317 | None:intergenic |
| AGGCATTGGACCGCAAGGAA+CGG | 0.559314 | 4.4:-34964924 | MS.gene057666:CDS |
| CCCGGAACTCCTAGTACTCC+CGG | 0.561127 | 4.4:-34971619 | MS.gene057666:CDS |
| AAGGGGCCAGGAAAAGCAGC+AGG | 0.561207 | 4.4:+34971358 | None:intergenic |
| AAGTCAATGCTTAAAGAACA+AGG | 0.563683 | 4.4:-34963039 | MS.gene057666:CDS |
| TATTGTATCAGACAAGCTGC+TGG | 0.567030 | 4.4:-34967763 | MS.gene057666:intron |
| TGGTTCGCAGGACAAGCTGC+GGG | 0.567632 | 4.4:-34960835 | MS.gene057666:intron |
| GATGGCGCCGGTGATGATGC+AGG | 0.568984 | 4.4:+34973573 | None:intergenic |
| AAAGCTGGCGGCGCACTTTG+GGG | 0.571914 | 4.4:+34973295 | None:intergenic |
| TGATGGAGTAGGAATAGAAG+AGG | 0.573030 | 4.4:+34967490 | None:intergenic |
| GAGTGGGCTGCACAGCAACT+TGG | 0.577693 | 4.4:+34970518 | None:intergenic |
| GCAAATTCCCAATGAGGTGG+CGG | 0.578570 | 4.4:-34967741 | MS.gene057666:CDS |
| CTATCCCTAGCTATTCTGCT+AGG | 0.579222 | 4.4:-34965241 | MS.gene057666:CDS |
| CGACCACCAGTGGTAATAGC+CGG | 0.580608 | 4.4:+34967611 | None:intergenic |
| GATGGAATAGGGATGGAAGT+AGG | 0.580981 | 4.4:+34973707 | None:intergenic |
| ACCAACTGCCAATCAGTACC+AGG | 0.581773 | 4.4:+34969506 | None:intergenic |
| GGCATTGTGGATATAGAAGT+AGG | 0.582367 | 4.4:+34971721 | None:intergenic |
| GGAGCAACCATGGATGGTAT+GGG | 0.585140 | 4.4:+34971448 | None:intergenic |
| GCTGCTCCATCTACAAGCAC+AGG | 0.585375 | 4.4:-34971553 | MS.gene057666:CDS |
| ATGTTCAACAGCTTTCAACT+CGG | 0.586994 | 4.4:+34961299 | None:intergenic |
| AAGGCTTCTCTATCTTCACT+TGG | 0.587101 | 4.4:+34959589 | None:intergenic |
| GTGGATATAGAAGTAGGAGC+AGG | 0.587934 | 4.4:+34971727 | None:intergenic |
| AGTTGGTCTCTACTAGTGAT+GGG | 0.588232 | 4.4:-34969490 | MS.gene057666:CDS |
| CCTGGTTGCACTGATGGAGT+AGG | 0.588394 | 4.4:+34967479 | None:intergenic |
| TCCCTGAGGTGGAGCAACCA+TGG | 0.588442 | 4.4:+34971438 | None:intergenic |
| CGCCACTGTGACACAGAATG+AGG | 0.588689 | 4.4:-34971048 | MS.gene057666:CDS |
| CCTACTCCATCAGTGCAACC+AGG | 0.588729 | 4.4:-34967479 | MS.gene057666:CDS |
| ACTACTGTATTGTCTGAGAG+AGG | 0.589570 | 4.4:-34967659 | MS.gene057666:CDS |
| CACAAAAGGCCGCAATTGAG+GGG | 0.591059 | 4.4:-34965154 | MS.gene057666:CDS |
| GCGAGAGCTGCGTAAAAGGA+AGG | 0.591852 | 4.4:-34960805 | MS.gene057666:CDS |
| GAAGCATCTTTACATGATCC+CGG | 0.591894 | 4.4:+34959984 | None:intergenic |
| TGAGGTGGAGCAACCATGGA+TGG | 0.592573 | 4.4:+34971442 | None:intergenic |
| CACTTTACTAAAATCTTGTG+TGG | 0.592921 | 4.4:+34971780 | None:intergenic |
| CTGGTTCGCAGGACAAGCTG+CGG | 0.592961 | 4.4:-34960836 | MS.gene057666:intron |
| CTATCCACCCATACCATCCA+TGG | 0.595305 | 4.4:-34971455 | MS.gene057666:CDS |
| AGGATGGACGGGAAAAGTTG+GGG | 0.596070 | 4.4:+34971648 | None:intergenic |
| TCCATGGTTGCTCCACCTCA+GGG | 0.597381 | 4.4:-34971439 | MS.gene057666:CDS |
| TTGATCAAATCCAGTGCCGA+TGG | 0.597511 | 4.4:+34967548 | None:intergenic |
| TCGTGCGGAAGAAGAACGCA+AGG | 0.598559 | 4.4:-34965189 | MS.gene057666:CDS |
| GCTACTAGACGAAGCCTCAG+AGG | 0.598680 | 4.4:-34965123 | MS.gene057666:intron |
| GATGCTTAAGGAGCGTGGCG+TGG | 0.599149 | 4.4:-34965504 | MS.gene057666:CDS |
| ATTCAGAAGACGAGGATAGT+GGG | 0.600872 | 4.4:-34967337 | MS.gene057666:CDS |
| GGGAGCATCTTCTGAACGAA+AGG | 0.601329 | 4.4:-34964903 | MS.gene057666:intron |
| GCTCCGGCTATTACCACTGG+TGG | 0.602029 | 4.4:-34967614 | MS.gene057666:CDS |
| GGTATGCAGAGGATATGATT+CGG | 0.602226 | 4.4:-34959558 | MS.gene057666:CDS |
| TTTACTAAAATCTTGTGTGG+CGG | 0.603992 | 4.4:+34971783 | None:intergenic |
| CTGGCAAATTCCCAATGAGG+TGG | 0.604078 | 4.4:-34967744 | MS.gene057666:CDS |
| AACTTACATTGAAACTGGAG+TGG | 0.604902 | 4.4:+34970501 | None:intergenic |
| GTCTGAGAGAGGGTCTGGAA+TGG | 0.605847 | 4.4:-34967648 | MS.gene057666:CDS |
| CACAGATGAGTGGTGTACAT+AGG | 0.606997 | 4.4:-34971399 | MS.gene057666:CDS |
| GTTGTTTCAGCAGCAGAGGG+AGG | 0.607878 | 4.4:+34973731 | None:intergenic |
| GAAGATGCTCCCGTTCCTTG+CGG | 0.608703 | 4.4:+34964914 | None:intergenic |
| CGTGGCACCATTCTCAAAGT+GGG | 0.609958 | 4.4:-34965486 | MS.gene057666:CDS |
| GCGTAAGAGATTGATGGCGC+CGG | 0.613325 | 4.4:+34973561 | None:intergenic |
| TAGGAGATGCTTAAGGAGCG+TGG | 0.613437 | 4.4:-34965509 | MS.gene057666:CDS |
| TGTCTCGGTACTGCAGCTGA+GGG | 0.614677 | 4.4:+34971526 | None:intergenic |
| TTTAACATAATGTTCAAACA+AGG | 0.617075 | 4.4:+34965214 | None:intergenic |
| ACCTGCTGGCTTTAAAGGGG+AGG | 0.618538 | 4.4:-34970925 | MS.gene057666:intron |
| GCGTGGCACCATTCTCAAAG+TGG | 0.621127 | 4.4:-34965487 | MS.gene057666:CDS |
| GTCAGAGCAAGGCGGCATTG+TGG | 0.621331 | 4.4:+34971708 | None:intergenic |
| CAGCAGATGACTGGAAGCAG+CGG | 0.624812 | 4.4:+34971237 | None:intergenic |
| TACAGCATCACGACCACCAG+TGG | 0.625947 | 4.4:+34967601 | None:intergenic |
| GCAACCATGGATGGTATGGG+TGG | 0.628786 | 4.4:+34971451 | None:intergenic |
| AATACAGTAGTATTTGGGAC+GGG | 0.631156 | 4.4:+34967671 | None:intergenic |
| CGTCTCAGGAAACTGACGAT+GGG | 0.632849 | 4.4:-34959681 | MS.gene057666:CDS |
| TATCGTACAAAGCTCACCAT+CGG | 0.634824 | 4.4:-34967564 | MS.gene057666:CDS |
| CAATACAGTAGTATTTGGGA+CGG | 0.635375 | 4.4:+34967670 | None:intergenic |
| GTTTGAGGCATTGGACCGCA+AGG | 0.636101 | 4.4:-34964929 | MS.gene057666:CDS |
| ATCTGATCCAAGATATAACA+AGG | 0.636281 | 4.4:-34959614 | MS.gene057666:CDS |
| ACTTACATTGAAACTGGAGT+GGG | 0.636689 | 4.4:+34970502 | None:intergenic |
| GAGTTCCGGGCATTACAGGA+TGG | 0.639013 | 4.4:+34971632 | None:intergenic |
| CTACTGTATTGTCTGAGAGA+GGG | 0.639250 | 4.4:-34967658 | MS.gene057666:CDS |
| GCAGGATATTGATGAAATGG+TGG | 0.640371 | 4.4:+34971376 | None:intergenic |
| GCACCAACAGGAGTAACACC+AGG | 0.640657 | 4.4:+34971277 | None:intergenic |
| ATCGTCAGTTTCCTGAGACG+CGG | 0.642398 | 4.4:+34959684 | None:intergenic |
| CTATGTACACCACTCATCTG+TGG | 0.642650 | 4.4:+34971400 | None:intergenic |
| CTTGTGGCGCCGGTATGCAG+AGG | 0.645188 | 4.4:-34959569 | MS.gene057666:CDS |
| ATCTTCAGATTCAGAAGACG+AGG | 0.645316 | 4.4:-34967345 | MS.gene057666:CDS |
| CGATAGTTAGGGTCAGAGCA+AGG | 0.646253 | 4.4:+34971697 | None:intergenic |
| CACGTGCTGGAAATGAAAAG+GGG | 0.651381 | 4.4:+34971341 | None:intergenic |
| GGATAGTGGGCCTTCAAAGG+AGG | 0.652790 | 4.4:-34967324 | MS.gene057666:CDS |
| ATATAAATCTGTGAAACATG+AGG | 0.654245 | 4.4:-34961352 | MS.gene057666:CDS |
| TGGTTCGCAGTAAAAGCTGG+CGG | 0.657869 | 4.4:+34973283 | None:intergenic |
| TAAACCTGCTGGCTTTAAAG+GGG | 0.658608 | 4.4:-34970928 | MS.gene057666:CDS |
| TGTAACCAATATCCCTGAGG+TGG | 0.659237 | 4.4:+34971427 | None:intergenic |
| AAAATTATATGGAAATGAAG+GGG | 0.663777 | 4.4:+34973318 | None:intergenic |
| CTGCTTAAACCCCTCAATTG+CGG | 0.667919 | 4.4:+34965145 | None:intergenic |
| GCGTCTCAGGAAACTGACGA+TGG | 0.673809 | 4.4:-34959682 | MS.gene057666:CDS |
| TGAGGCAACATTAACCTCTG+AGG | 0.674577 | 4.4:+34965109 | None:intergenic |
| TATATACTAACAGAATGTGA+CGG | 0.676641 | 4.4:+34973495 | None:intergenic |
| TTACAGCCTCCACAGATGAG+TGG | 0.676991 | 4.4:-34971409 | MS.gene057666:CDS |
| TTACTATAACAATCGAACCA+AGG | 0.679735 | 4.4:-34969459 | MS.gene057666:intron |
| TGTACACCACTCATCTGTGG+AGG | 0.681421 | 4.4:+34971403 | None:intergenic |
| CTGCTGGCAAATTCCCAATG+AGG | 0.682038 | 4.4:-34967747 | MS.gene057666:CDS |
| GCTTCCAGTCATCTGCTGAG+GGG | 0.683518 | 4.4:-34971232 | MS.gene057666:CDS |
| AGAGACCAGAGCTAAAAGGG+AGG | 0.686025 | 4.4:-34961265 | MS.gene057666:CDS |
| GTGAAGATAGAGAAGCCTTG+TGG | 0.691864 | 4.4:-34959585 | MS.gene057666:CDS |
| CTGCCCACAAGACTGAAGCA+GGG | 0.691968 | 4.4:-34970995 | MS.gene057666:CDS |
| ATAGGGTAAGCCTCTATGTG+AGG | 0.692924 | 4.4:+34971474 | None:intergenic |
| AATCAGGTACTGGAACAGCA+GGG | 0.700220 | 4.4:+34971308 | None:intergenic |
| ATGCAGAGGATATGATTCGG+CGG | 0.708222 | 4.4:-34959555 | MS.gene057666:CDS |
| ATCCTCATTCTGTGTCACAG+TGG | 0.709329 | 4.4:+34971046 | None:intergenic |
| ACTATTATAATGCTTTGACA+GGG | 0.711480 | 4.4:-34970965 | MS.gene057666:CDS |
| GGCTGTAACCAATATCCCTG+AGG | 0.714417 | 4.4:+34971424 | None:intergenic |
| TCTCAAAATACCTTAAAACG+AGG | 0.724653 | 4.4:+34965434 | None:intergenic |
| CCAACAGGAGTAACACCAGG+AGG | 0.749977 | 4.4:+34971280 | None:intergenic |
| ATACTAACAGAATGTGACGG+CGG | 0.753756 | 4.4:+34973498 | None:intergenic |
| TAGTTAGGGTCAGAGCAAGG+CGG | 0.758647 | 4.4:+34971700 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 34959441 | 34973765 | 34959441 | ID=MS.gene057666 |
| chr4.4 | mRNA | 34959441 | 34973765 | 34959441 | ID=MS.gene057666.t1;Parent=MS.gene057666 |
| chr4.4 | exon | 34973684 | 34973765 | 34973684 | ID=MS.gene057666.t1.exon1;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34973684 | 34973765 | 34973684 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34973506 | 34973597 | 34973506 | ID=MS.gene057666.t1.exon2;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34973506 | 34973597 | 34973506 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34973264 | 34973419 | 34973264 | ID=MS.gene057666.t1.exon3;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34973264 | 34973419 | 34973264 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34971191 | 34971818 | 34971191 | ID=MS.gene057666.t1.exon4;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34971191 | 34971818 | 34971191 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34970926 | 34971089 | 34970926 | ID=MS.gene057666.t1.exon5;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34970926 | 34971089 | 34970926 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34970508 | 34970545 | 34970508 | ID=MS.gene057666.t1.exon6;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34970508 | 34970545 | 34970508 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34969460 | 34969538 | 34969460 | ID=MS.gene057666.t1.exon7;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34969460 | 34969538 | 34969460 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34967304 | 34967774 | 34967304 | ID=MS.gene057666.t1.exon8;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34967304 | 34967774 | 34967304 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34965445 | 34965528 | 34965445 | ID=MS.gene057666.t1.exon9;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34965445 | 34965528 | 34965445 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34965124 | 34965264 | 34965124 | ID=MS.gene057666.t1.exon10;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34965124 | 34965264 | 34965124 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34964904 | 34965010 | 34964904 | ID=MS.gene057666.t1.exon11;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34964904 | 34965010 | 34964904 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34963008 | 34963131 | 34963008 | ID=MS.gene057666.t1.exon12;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34963008 | 34963131 | 34963008 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34961260 | 34961403 | 34961260 | ID=MS.gene057666.t1.exon13;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34961260 | 34961403 | 34961260 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34960701 | 34960847 | 34960701 | ID=MS.gene057666.t1.exon14;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34960701 | 34960847 | 34960701 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34959979 | 34960101 | 34959979 | ID=MS.gene057666.t1.exon15;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34959979 | 34960101 | 34959979 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| chr4.4 | exon | 34959441 | 34959758 | 34959441 | ID=MS.gene057666.t1.exon16;Parent=MS.gene057666.t1 |
| chr4.4 | CDS | 34959441 | 34959758 | 34959441 | ID=cds.MS.gene057666.t1;Parent=MS.gene057666.t1 |
| Gene Sequence |
| Protein sequence |
