Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041600.t1 | XP_013458264.1 | 93.8 | 520 | 17 | 1 | 1 | 505 | 1 | 520 | 3.80E-262 | 913.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041600.t1 | Q9M7Z1 | 60.2 | 457 | 147 | 3 | 49 | 505 | 62 | 483 | 2.6e-150 | 533.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041600.t1 | A0A072V2G4 | 93.8 | 520 | 17 | 1 | 1 | 505 | 1 | 520 | 2.7e-262 | 913.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041600 | MS.gene065539 | PPI |
| MS.gene041600 | MS.gene020722 | PPI |
| MS.gene041600 | MS.gene81790 | PPI |
| MS.gene041600 | MS.gene73491 | PPI |
| MS.gene041600 | MS.gene81379 | PPI |
| MS.gene041600 | MS.gene037762 | PPI |
| MS.gene041600 | MS.gene80759 | PPI |
| MS.gene041600 | MS.gene061817 | PPI |
| MS.gene041600 | MS.gene072037 | PPI |
| MS.gene041600 | MS.gene63889 | PPI |
| MS.gene041600 | MS.gene047179 | PPI |
| MS.gene041600 | MS.gene48056 | PPI |
| MS.gene041600 | MS.gene020723 | PPI |
| MS.gene041600 | MS.gene073516 | PPI |
| MS.gene041600 | MS.gene002068 | PPI |
| MS.gene041600 | MS.gene00641 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041600.t1 | MTR_4g120220 | 93.846 | 520 | 17 | 1 | 1 | 505 | 1 | 520 | 0.0 | 998 |
| MS.gene041600.t1 | MTR_8g018770 | 26.509 | 464 | 294 | 15 | 56 | 502 | 110 | 543 | 2.42e-36 | 142 |
| MS.gene041600.t1 | MTR_1g091037 | 26.923 | 416 | 277 | 9 | 79 | 488 | 225 | 619 | 2.96e-32 | 130 |
| MS.gene041600.t1 | MTR_1g091037 | 26.923 | 416 | 277 | 9 | 79 | 488 | 217 | 611 | 3.32e-32 | 130 |
| MS.gene041600.t1 | MTR_1g111140 | 28.538 | 431 | 286 | 8 | 74 | 502 | 60 | 470 | 7.96e-30 | 122 |
| MS.gene041600.t1 | MTR_1g096240 | 25.664 | 452 | 271 | 8 | 74 | 502 | 48 | 457 | 4.37e-25 | 108 |
| MS.gene041600.t1 | MTR_5g093300 | 32.367 | 207 | 133 | 4 | 299 | 504 | 255 | 455 | 8.09e-23 | 101 |
| MS.gene041600.t1 | MTR_2g006820 | 32.367 | 207 | 133 | 4 | 299 | 504 | 253 | 453 | 9.07e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041600.t1 | AT3G06850 | 61.488 | 457 | 141 | 5 | 49 | 505 | 62 | 483 | 0.0 | 550 |
| MS.gene041600.t1 | AT3G06850 | 61.488 | 457 | 141 | 5 | 49 | 505 | 62 | 483 | 0.0 | 550 |
| MS.gene041600.t1 | AT3G13930 | 27.721 | 487 | 290 | 20 | 38 | 502 | 93 | 539 | 5.56e-37 | 143 |
| MS.gene041600.t1 | AT1G54220 | 27.468 | 466 | 286 | 17 | 56 | 502 | 107 | 539 | 8.38e-37 | 143 |
| MS.gene041600.t1 | AT1G54220 | 27.468 | 466 | 286 | 17 | 56 | 502 | 107 | 539 | 8.38e-37 | 143 |
| MS.gene041600.t1 | AT3G25860 | 27.273 | 429 | 297 | 7 | 74 | 502 | 67 | 480 | 1.51e-31 | 127 |
| MS.gene041600.t1 | AT3G52200 | 27.586 | 464 | 298 | 14 | 50 | 502 | 201 | 637 | 8.29e-31 | 126 |
| MS.gene041600.t1 | AT3G52200 | 27.586 | 464 | 298 | 14 | 50 | 502 | 277 | 713 | 9.94e-31 | 127 |
| MS.gene041600.t1 | AT4G26910 | 30.882 | 204 | 135 | 4 | 303 | 504 | 166 | 365 | 2.01e-22 | 99.4 |
| MS.gene041600.t1 | AT1G34430 | 24.945 | 457 | 273 | 10 | 74 | 502 | 51 | 465 | 5.20e-22 | 99.4 |
| MS.gene041600.t1 | AT4G26910 | 30.882 | 204 | 135 | 4 | 303 | 504 | 264 | 463 | 6.28e-22 | 99.0 |
| MS.gene041600.t1 | AT4G26910 | 30.882 | 204 | 135 | 4 | 303 | 504 | 265 | 464 | 6.50e-22 | 99.0 |
| MS.gene041600.t1 | AT5G55070 | 29.268 | 205 | 137 | 4 | 303 | 504 | 265 | 464 | 1.06e-21 | 98.2 |
| MS.gene041600.t1 | AT5G55070 | 29.268 | 205 | 137 | 4 | 303 | 504 | 265 | 464 | 1.06e-21 | 98.2 |
Find 0 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATTTAGAAATTAGTA+GGG | + | 32569:18924-18943 | MS.gene041600:intron | 10.0% |
| !! | TTATAAATTTAGAAATTAGT+AGG | + | 32569:18923-18942 | MS.gene041600:intron | 10.0% |
| !!! | AAAATATTCTTTAAAAATCA+TGG | + | 32569:20945-20964 | MS.gene041600:intron | 10.0% |
| !!! | AAGAAAATAATTTTCTTATT+AGG | + | 32569:20235-20254 | MS.gene041600:intron | 10.0% |
| !!! | AATGATTTATTATGTTATTT+TGG | + | 32569:18711-18730 | MS.gene041600:intron | 10.0% |
| !! | ATCAATCAATATCTTTAATA+GGG | - | 32569:19579-19598 | MS.gene041600:intergenic | 15.0% |
| !! | CATATAATATGAATATGATA+AGG | - | 32569:20290-20309 | MS.gene041600:intergenic | 15.0% |
| !! | CCTATTTATACTTATAATTT+GGG | - | 32569:19402-19421 | MS.gene041600:intergenic | 15.0% |
| !! | TCCTATTTATACTTATAATT+TGG | - | 32569:19403-19422 | MS.gene041600:intergenic | 15.0% |
| !!! | ATTTATTATGTTATTTTGGT+AGG | + | 32569:18715-18734 | MS.gene041600:intron | 15.0% |
| !!! | TATTGTTGTTTTTTTTAATG+TGG | - | 32569:21665-21684 | MS.gene041600:intergenic | 15.0% |
| !!! | TTTATTATGTTATTTTGGTA+GGG | + | 32569:18716-18735 | MS.gene041600:intron | 15.0% |
| !! | ATCACAATATAAATTTGACA+CGG | + | 32569:21172-21191 | MS.gene041600:intron | 20.0% |
| !! | ATGCGAAAAATAAATATGAT+AGG | + | 32569:19969-19988 | MS.gene041600:CDS | 20.0% |
| !! | ATTAATCAAATCACTATCAA+TGG | + | 32569:20722-20741 | MS.gene041600:CDS | 20.0% |
| !! | ATTTATTATGATGATTTGAG+TGG | + | 32569:21761-21780 | MS.gene041600:intron | 20.0% |
| !! | CATCAATCAATATCTTTAAT+AGG | - | 32569:19580-19599 | MS.gene041600:intergenic | 20.0% |
| !! | CCCAAATTATAAGTATAAAT+AGG | + | 32569:19399-19418 | MS.gene041600:intron | 20.0% |
| !! | GATAGTGATTTGATTAATAT+TGG | - | 32569:20720-20739 | MS.gene041600:intergenic | 20.0% |
| !! | TAAGTATTTCAATAGTTTGA+AGG | + | 32569:20448-20467 | MS.gene041600:intron | 20.0% |
| !! | TAATATAAAAGAGTTGGATA+AGG | - | 32569:20317-20336 | MS.gene041600:intergenic | 20.0% |
| !! | TCTTCAATGATTATAGTTAA+TGG | + | 32569:21686-21705 | MS.gene041600:intron | 20.0% |
| !! | TGTCAAATTTATATTGTGAT+AGG | - | 32569:21172-21191 | MS.gene041600:intergenic | 20.0% |
| !! | TGTTTATATGGCATTTATTT+GGG | + | 32569:19188-19207 | MS.gene041600:intron | 20.0% |
| !! | TTCTATGATAAAAAAACAGA+AGG | - | 32569:21124-21143 | MS.gene041600:intergenic | 20.0% |
| !! | TTTATTATGATGATTTGAGT+GGG | + | 32569:21762-21781 | MS.gene041600:intron | 20.0% |
| !!! | AAATATATTTGAGCTTCTTT+TGG | + | 32569:19531-19550 | MS.gene041600:intron | 20.0% |
| !!! | AATATATTTGAGCTTCTTTT+GGG | + | 32569:19532-19551 | MS.gene041600:intron | 20.0% |
| !!! | CTAATATGTATATTGATTTC+TGG | + | 32569:21055-21074 | MS.gene041600:intron | 20.0% |
| !!! | GACTGAACATTTTTTATATT+CGG | - | 32569:21266-21285 | MS.gene041600:intergenic | 20.0% |
| !!! | GTATTTTTAAACATGTTTGA+GGG | + | 32569:19025-19044 | MS.gene041600:intron | 20.0% |
| !!! | TGTATTTTTAAACATGTTTG+AGG | + | 32569:19024-19043 | MS.gene041600:intron | 20.0% |
| !!! | TTATACTTATAATTTGGGTT+TGG | - | 32569:19397-19416 | MS.gene041600:intergenic | 20.0% |
| !!! | TTATTATGTTATTTTGGTAG+GGG | + | 32569:18717-18736 | MS.gene041600:intron | 20.0% |
| !!! | TTTAATTTGAAGCATGTTAA+GGG | + | 32569:18490-18509 | MS.gene041600:CDS | 20.0% |
| !!! | TTTTTATCATAGAATTCACA+AGG | + | 32569:21130-21149 | MS.gene041600:intron | 20.0% |
| ! | AAAACCATAAATAACCATAC+AGG | - | 32569:21347-21366 | MS.gene041600:intergenic | 25.0% |
| ! | AAAGTTTCTAATATTCTGCA+TGG | + | 32569:18821-18840 | MS.gene041600:CDS | 25.0% |
| ! | AACTTGAATTATAAAGACCT+TGG | + | 32569:20496-20515 | MS.gene041600:intron | 25.0% |
| ! | AATAGGAATAATTGTTGAGA+AGG | + | 32569:19416-19435 | MS.gene041600:intron | 25.0% |
| ! | AGAAGCTCAAATATATTTGA+TGG | - | 32569:19529-19548 | MS.gene041600:intergenic | 25.0% |
| ! | AGCATAGTAATTCAATTTGA+AGG | - | 32569:21037-21056 | MS.gene041600:intergenic | 25.0% |
| ! | ATCTAGTTAAAATCTTGTCA+TGG | + | 32569:20173-20192 | MS.gene041600:intron | 25.0% |
| ! | ATTGATATAAATGAAGTCTG+TGG | + | 32569:19809-19828 | MS.gene041600:CDS | 25.0% |
| ! | ATTTGATGGAAATAATGCAT+TGG | - | 32569:19515-19534 | MS.gene041600:intergenic | 25.0% |
| ! | GACACATAATATAAAAGAGT+TGG | - | 32569:20323-20342 | MS.gene041600:intergenic | 25.0% |
| ! | GATATGAAATTTCATTCTGT+CGG | + | 32569:18867-18886 | MS.gene041600:intron | 25.0% |
| ! | GTGATTTGATTAATATTGGA+AGG | - | 32569:20716-20735 | MS.gene041600:intergenic | 25.0% |
| ! | GTGTTTATATGGCATTTATT+TGG | + | 32569:19187-19206 | MS.gene041600:intron | 25.0% |
| ! | TGAATATAAGGTTTCTTTCT+TGG | + | 32569:20897-20916 | MS.gene041600:intron | 25.0% |
| ! | TTCTCATAAGACTTAGTAAA+GGG | - | 32569:20373-20392 | MS.gene041600:intergenic | 25.0% |
| !! | ATTCTTTAAAAATCATGGTG+AGG | + | 32569:20950-20969 | MS.gene041600:intron | 25.0% |
| !! | ATTTTTGCAGAGTGAATATA+AGG | + | 32569:20885-20904 | MS.gene041600:intron | 25.0% |
| !! | TGCTTTCTATTCTTTTTGTA+GGG | + | 32569:20542-20561 | MS.gene041600:intron | 25.0% |
| !! | TTAATAGCAGTGTTGTTAAA+TGG | + | 32569:19057-19076 | MS.gene041600:intron | 25.0% |
| !! | TTGCTTTCTATTCTTTTTGT+AGG | + | 32569:20541-20560 | MS.gene041600:intron | 25.0% |
| !! | TTTACTAAGTCTTATGAGAA+GGG | + | 32569:20373-20392 | MS.gene041600:intron | 25.0% |
| !!! | ATGCATTCATTTTTACCTAA+GGG | - | 32569:20017-20036 | MS.gene041600:intergenic | 25.0% |
| !!! | GTTTAATTTGAAGCATGTTA+AGG | + | 32569:18489-18508 | MS.gene041600:intron | 25.0% |
| !!! | TATGCATTCATTTTTACCTA+AGG | - | 32569:20018-20037 | MS.gene041600:intergenic | 25.0% |
| !!! | TATTATGTTATTTTGGTAGG+GGG | + | 32569:18718-18737 | MS.gene041600:intron | 25.0% |
| !!! | TGACAAGATTTTAACTAGAT+AGG | - | 32569:20173-20192 | MS.gene041600:intergenic | 25.0% |
| AAATTTCATTCTGTCGGTAA+TGG | + | 32569:18873-18892 | MS.gene041600:intron | 30.0% | |
| AAGAACCTAGATTCTGATAT+TGG | + | 32569:19722-19741 | MS.gene041600:CDS | 30.0% | |
| AATAATTGTTGAGAAGGAGA+GGG | + | 32569:19422-19441 | MS.gene041600:intron | 30.0% | |
| AATTAGTAGGGTACATACAT+TGG | + | 32569:18936-18955 | MS.gene041600:intron | 30.0% | |
| ACAATCACTTTGAGTAACAT+TGG | + | 32569:21457-21476 | MS.gene041600:CDS | 30.0% | |
| AGATTCAGCAATCATCTATA+AGG | - | 32569:21725-21744 | MS.gene041600:intergenic | 30.0% | |
| AGTTAAAATCTTGTCATGGA+TGG | + | 32569:20177-20196 | MS.gene041600:intron | 30.0% | |
| ATCAGCAATACTACTTAAGA+GGG | + | 32569:19219-19238 | MS.gene041600:intron | 30.0% | |
| CAATATAAATTTGACACGGT+AGG | + | 32569:21176-21195 | MS.gene041600:intron | 30.0% | |
| CCTGAAAATGAGTTTATAAG+TGG | + | 32569:19325-19344 | MS.gene041600:intron | 30.0% | |
| CGTCTACATAATGAAAATGT+GGG | - | 32569:20614-20633 | MS.gene041600:intergenic | 30.0% | |
| CTAACTCAACATTACAAAAC+CGG | - | 32569:19373-19392 | MS.gene041600:intergenic | 30.0% | |
| CTAGATTCTGATATTGGAAA+GGG | + | 32569:19728-19747 | MS.gene041600:CDS | 30.0% | |
| CTTCTCATAAGACTTAGTAA+AGG | - | 32569:20374-20393 | MS.gene041600:intergenic | 30.0% | |
| GCAGACTCATTAACAAATAT+CGG | - | 32569:19665-19684 | MS.gene041600:intergenic | 30.0% | |
| GGTATTATTCAGTAAGACAA+TGG | + | 32569:18894-18913 | MS.gene041600:intron | 30.0% | |
| TAGATTCTGATATTGGAAAG+GGG | + | 32569:19729-19748 | MS.gene041600:CDS | 30.0% | |
| TCGTCTACATAATGAAAATG+TGG | - | 32569:20615-20634 | MS.gene041600:intergenic | 30.0% | |
| TCTTGGATCTCAAATATCTA+GGG | + | 32569:19460-19479 | MS.gene041600:intron | 30.0% | |
| TTAAACATGTTTGAGGGAAT+GGG | + | 32569:19031-19050 | MS.gene041600:intron | 30.0% | |
| TTCAGAACTATCAAACTTCA+AGG | - | 32569:20866-20885 | MS.gene041600:intergenic | 30.0% | |
| TTTAAACATGTTTGAGGGAA+TGG | + | 32569:19030-19049 | MS.gene041600:intron | 30.0% | |
| ! | CCACTTATAAACTCATTTTC+AGG | - | 32569:19328-19347 | MS.gene041600:intergenic | 30.0% |
| ! | CTTTACTAAGTCTTATGAGA+AGG | + | 32569:20372-20391 | MS.gene041600:intron | 30.0% |
| ! | GCTTTCTATTCTTTTTGTAG+GGG | + | 32569:20543-20562 | MS.gene041600:intron | 30.0% |
| ! | TTACTAAGTCTTATGAGAAG+GGG | + | 32569:20374-20393 | MS.gene041600:intron | 30.0% |
| !! | CTTCTTTTGGGTAAAATTTC+AGG | + | 32569:19544-19563 | MS.gene041600:intron | 30.0% |
| !! | GTTAATTTGCATACATGACA+AGG | - | 32569:21015-21034 | MS.gene041600:intergenic | 30.0% |
| !! | TCAATTTTGCTGTCAAGAAA+GGG | + | 32569:19870-19889 | MS.gene041600:CDS | 30.0% |
| !! | TGCATTCATTTTTACCTAAG+GGG | - | 32569:20016-20035 | MS.gene041600:intergenic | 30.0% |
| !! | TTCTGCTTTCAGGTTAATAT+TGG | + | 32569:21822-21841 | MS.gene041600:intron | 30.0% |
| !! | TTTTGGGTAAAATTTCAGGT+TGG | + | 32569:19548-19567 | MS.gene041600:intron | 30.0% |
| !!! | TGATTCTTTTTTCTGCTTTC+AGG | + | 32569:21812-21831 | MS.gene041600:intron | 30.0% |
| AAATCATGGTGAGGTTAAAC+AGG | + | 32569:20959-20978 | MS.gene041600:intron | 35.0% | |
| ACAAATATCGGATCAGAATC+AGG | - | 32569:19653-19672 | MS.gene041600:intergenic | 35.0% | |
| ACGGTAGGCTAATTTGATAT+AGG | + | 32569:21191-21210 | MS.gene041600:intron | 35.0% | |
| AGATAACAAGTTAAGTTCCG+AGG | + | 32569:21420-21439 | MS.gene041600:CDS | 35.0% | |
| AGATAGGCCGAATATGATAA+GGG | - | 32569:20157-20176 | MS.gene041600:intergenic | 35.0% | |
| AGTTCTACAACTGAGAGTAA+AGG | - | 32569:20480-20499 | MS.gene041600:intergenic | 35.0% | |
| ATAAATGAAGTCTGTGGAAC+TGG | + | 32569:19815-19834 | MS.gene041600:CDS | 35.0% | |
| ATAATTGTTGAGAAGGAGAG+GGG | + | 32569:19423-19442 | MS.gene041600:intron | 35.0% | |
| ATCGCCTGTATGGTTATTTA+TGG | + | 32569:21340-21359 | MS.gene041600:intron | 35.0% | |
| CAGAATGTGAACTTCTCAAA+TGG | + | 32569:18599-18618 | MS.gene041600:CDS | 35.0% | |
| CATCAGCAATACTACTTAAG+AGG | + | 32569:19218-19237 | MS.gene041600:intron | 35.0% | |
| CCTAGATTCTGATATTGGAA+AGG | + | 32569:19727-19746 | MS.gene041600:CDS | 35.0% | |
| CCTTTCCAATATCAGAATCT+AGG | - | 32569:19730-19749 | MS.gene041600:intergenic | 35.0% | |
| CTCTTAAGTAGTATTGCTGA+TGG | - | 32569:19220-19239 | MS.gene041600:intergenic | 35.0% | |
| CTTCTGATACTTTCTCTTCT+GGG | + | 32569:18304-18323 | MS.gene041600:CDS | 35.0% | |
| CTTGGATCTCAAATATCTAG+GGG | + | 32569:19461-19480 | MS.gene041600:intron | 35.0% | |
| GAATAATTGTTGAGAAGGAG+AGG | + | 32569:19421-19440 | MS.gene041600:intron | 35.0% | |
| GATATAGGTTCACACAACAT+TGG | + | 32569:21206-21225 | MS.gene041600:intron | 35.0% | |
| GATGATTGCTGAATCTATGT+TGG | + | 32569:21729-21748 | MS.gene041600:intron | 35.0% | |
| GATGGTAAAATCAATGTCTC+TGG | + | 32569:20578-20597 | MS.gene041600:CDS | 35.0% | |
| GCCACAATGATGTGTTTATA+TGG | + | 32569:19176-19195 | MS.gene041600:intron | 35.0% | |
| GCCATATAAACACATCATTG+TGG | - | 32569:19180-19199 | MS.gene041600:intergenic | 35.0% | |
| GTCTTGGATCTCAAATATCT+AGG | + | 32569:19459-19478 | MS.gene041600:intron | 35.0% | |
| TAAAATCTTGTCATGGATGG+AGG | + | 32569:20180-20199 | MS.gene041600:intron | 35.0% | |
| TAAATATGATAGGCCTTCTG+AGG | + | 32569:19979-19998 | MS.gene041600:CDS | 35.0% | |
| TAGATAGGCCGAATATGATA+AGG | - | 32569:20158-20177 | MS.gene041600:intergenic | 35.0% | |
| TCTCAAATGGTATGTTCAAG+AGG | + | 32569:18612-18631 | MS.gene041600:CDS | 35.0% | |
| TGAAGTCATTCTCAAAGGTT+TGG | + | 32569:20794-20813 | MS.gene041600:intron | 35.0% | |
| TGTTCAGTCTCTTTCCATAT+TGG | + | 32569:21277-21296 | MS.gene041600:CDS | 35.0% | |
| TTAAGTAGTATTGCTGATGG+CGG | - | 32569:19217-19236 | MS.gene041600:intergenic | 35.0% | |
| TTAAGTTCCGAGGATATATG+TGG | + | 32569:21430-21449 | MS.gene041600:CDS | 35.0% | |
| TTAGTAAAGGGTCTGTTTGA+TGG | - | 32569:20361-20380 | MS.gene041600:intergenic | 35.0% | |
| TTCAGCAATCATCTATAAGG+CGG | - | 32569:21722-21741 | MS.gene041600:intergenic | 35.0% | |
| TTGAGTAACATTGGAGCAAT+TGG | + | 32569:21466-21485 | MS.gene041600:CDS | 35.0% | |
| TTGTAAGCTAACCTCCAATA+TGG | - | 32569:21294-21313 | MS.gene041600:intergenic | 35.0% | |
| ! | GCATTTGAAGTCATTCTCAA+AGG | + | 32569:20789-20808 | MS.gene041600:CDS | 35.0% |
| ! | GTTTGGTTCGTCTACATAAT+TGG | + | 32569:20811-20830 | MS.gene041600:intron | 35.0% |
| ! | TACATGAATTTGAAGCCACT+CGG | + | 32569:20036-20055 | MS.gene041600:intron | 35.0% |
| ! | TTGATTTTACCATCGCTCTT+TGG | - | 32569:20572-20591 | MS.gene041600:intergenic | 35.0% |
| ! | TTTTTCTGCTCAACCTGTTT+TGG | + | 32569:18519-18538 | MS.gene041600:CDS | 35.0% |
| !! | CGGTTTTGTAATGTTGAGTT+AGG | + | 32569:19371-19390 | MS.gene041600:intron | 35.0% |
| !! | CTCAATTTTGCTGTCAAGAA+AGG | + | 32569:19869-19888 | MS.gene041600:CDS | 35.0% |
| !! | CTTAAGAGGGTTAGTTAGTT+AGG | + | 32569:19232-19251 | MS.gene041600:intron | 35.0% |
| AAACACATCATTGTGGCCTA+TGG | - | 32569:19173-19192 | None:intergenic | 40.0% | |
| AAATGCAACACGAGTAACTC+TGG | - | 32569:21921-21940 | MS.gene041600:intergenic | 40.0% | |
| AACTTTCTGAATTCGTCCCA+TGG | - | 32569:21542-21561 | MS.gene041600:intergenic | 40.0% | |
| AAGTATCAGAAGCAGAGAGA+CGG | - | 32569:18296-18315 | MS.gene041600:intergenic | 40.0% | |
| ACACAACATTGGAATTGCGA+TGG | + | 32569:21217-21236 | MS.gene041600:CDS | 40.0% | |
| ACTCACATCTATGCGAGAAT+TGG | - | 32569:18382-18401 | MS.gene041600:intergenic | 40.0% | |
| AGATAACCAAAGAGCTAGCA+AGG | + | 32569:21380-21399 | MS.gene041600:intron | 40.0% | |
| AGTAACATTGGAGCAATTGG+TGG | + | 32569:21469-21488 | MS.gene041600:CDS | 40.0% | |
| AGTTAACCTTCTCATGACCA+AGG | - | 32569:20516-20535 | MS.gene041600:intergenic | 40.0% | |
| ATATATGCACATCGCCTGTA+TGG | + | 32569:21330-21349 | MS.gene041600:intron | 40.0% | |
| ATCCCTTCACAAATTGCCTA+TGG | - | 32569:19134-19153 | MS.gene041600:intergenic | 40.0% | |
| ATGGCAATAATAGCGACTTC+GGG | - | 32569:21523-21542 | MS.gene041600:intergenic | 40.0% | |
| CACCATAGGCAATTTGTGAA+GGG | + | 32569:19129-19148 | MS.gene041600:intron | 40.0% | |
| CATGGCAATAATAGCGACTT+CGG | - | 32569:21524-21543 | MS.gene041600:intergenic | 40.0% | |
| CTCACATCTATGCGAGAATT+GGG | - | 32569:18381-18400 | MS.gene041600:intergenic | 40.0% | |
| GAAATTACGAGTCGCTACAA+AGG | + | 32569:18797-18816 | MS.gene041600:CDS | 40.0% | |
| GAAGTCGCTATTATTGCCAT+GGG | + | 32569:21523-21542 | MS.gene041600:CDS | 40.0% | |
| GATAGGCCGAATATGATAAG+GGG | - | 32569:20156-20175 | MS.gene041600:intergenic | 40.0% | |
| GCATTCTTCACTCTACAAAC+CGG | + | 32569:19351-19370 | MS.gene041600:intron | 40.0% | |
| GCTTCTGATACTTTCTCTTC+TGG | + | 32569:18303-18322 | MS.gene041600:CDS | 40.0% | |
| GGTTTAAAAATCAGCAGGAC+AGG | + | 32569:20210-20229 | MS.gene041600:intron | 40.0% | |
| GTACATACATTGGTGTGAGA+GGG | + | 32569:18946-18965 | MS.gene041600:intron | 40.0% | |
| GTGTGCTTGACATCTGTATA+AGG | - | 32569:20690-20709 | MS.gene041600:intergenic | 40.0% | |
| TAAAGACCTTGGTCATGAGA+AGG | + | 32569:20507-20526 | MS.gene041600:intron | 40.0% | |
| TACATACATTGGTGTGAGAG+GGG | + | 32569:18947-18966 | MS.gene041600:intron | 40.0% | |
| TCACTTTGAACTTCACAGAG+TGG | - | 32569:18764-18783 | MS.gene041600:intergenic | 40.0% | |
| TCAGTCTCTTTCCATATTGG+AGG | + | 32569:21280-21299 | MS.gene041600:CDS | 40.0% | |
| TCCTGTCCCCTTATCATATT+CGG | + | 32569:20147-20166 | MS.gene041600:intron | 40.0% | |
| TCTAATATTCTGCATGGTCC+TGG | + | 32569:18827-18846 | MS.gene041600:CDS | 40.0% | |
| TCTATGCGAGAATTGGGTTT+AGG | - | 32569:18375-18394 | MS.gene041600:intergenic | 40.0% | |
| TGAAACAGAGGAATGGTAAG+AGG | - | 32569:18337-18356 | MS.gene041600:intergenic | 40.0% | |
| TGGAACTGGAAAAGATGGAA+GGG | + | 32569:19829-19848 | MS.gene041600:CDS | 40.0% | |
| TTCTATCAACACCTGCTGTA+AGG | + | 32569:19765-19784 | MS.gene041600:CDS | 40.0% | |
| TTGAAGCAACTGTTCACAGA+GGG | - | 32569:20762-20781 | MS.gene041600:intergenic | 40.0% | |
| TTTCCATCATCAGTAAACCG+CGG | - | 32569:21565-21584 | MS.gene041600:intergenic | 40.0% | |
| ! | AAGAGTGTGAAACAGAGGAA+TGG | - | 32569:18344-18363 | MS.gene041600:intergenic | 40.0% |
| ! | AGGTCTTATCTCAGCAAATG+TGG | - | 32569:19308-19327 | MS.gene041600:intergenic | 40.0% |
| ! | CAGAAAAGAGTGTGAAACAG+AGG | - | 32569:18349-18368 | MS.gene041600:intergenic | 40.0% |
| ! | CAGAGAAGAGCTTTGATCTA+CGG | + | 32569:18258-18277 | MS.gene041600:CDS | 40.0% |
| ! | GAACATAGTTGATGTCCCTT+TGG | + | 32569:18555-18574 | MS.gene041600:CDS | 40.0% |
| ! | GTGTTGTTAAATGGCCACAA+TGG | + | 32569:19066-19085 | MS.gene041600:intron | 40.0% |
| ! | TAAGTCTTATGAGAAGGGGA+TGG | + | 32569:20378-20397 | MS.gene041600:intron | 40.0% |
| ! | TTGCAAGATTTTGCAACGAG+TGG | + | 32569:21877-21896 | MS.gene041600:CDS | 40.0% |
| ! | TTTGAAGCAACTGTTCACAG+AGG | - | 32569:20763-20782 | MS.gene041600:intergenic | 40.0% |
| !! | AGGCTGGTTTAAAAATCAGC+AGG | + | 32569:20205-20224 | MS.gene041600:intron | 40.0% |
| !! | GATTTTGGAGAACAGCTTCA+GGG | + | 32569:19926-19945 | MS.gene041600:CDS | 40.0% |
| !! | TCATTAGCCTATTGGCTCTT+TGG | + | 32569:20988-21007 | MS.gene041600:intron | 40.0% |
| !! | TGATTTTGGAGAACAGCTTC+AGG | + | 32569:19925-19944 | MS.gene041600:CDS | 40.0% |
| !!! | GCTGTTTTGCATGCTGATTT+TGG | + | 32569:19911-19930 | MS.gene041600:CDS | 40.0% |
| AAAGTCGTTGAAGGACATGC+AGG | - | 32569:19605-19624 | None:intergenic | 45.0% | |
| AACAGAGGAATGGTAAGAGG+AGG | - | 32569:18334-18353 | MS.gene041600:intergenic | 45.0% | |
| ACAAGGACCAAAGAGCCAAT+AGG | - | 32569:20998-21017 | MS.gene041600:intergenic | 45.0% | |
| ACTTCGGGCAGATTAAGAAG+TGG | - | 32569:21508-21527 | MS.gene041600:intergenic | 45.0% | |
| AGTTCCGAGGATATATGTGG+TGG | + | 32569:21433-21452 | MS.gene041600:CDS | 45.0% | |
| ATTGGAAAGGGGAAACAAGC+AGG | + | 32569:19740-19759 | MS.gene041600:CDS | 45.0% | |
| CCACCATAGGCAATTTGTGA+AGG | + | 32569:19128-19147 | MS.gene041600:intron | 45.0% | |
| CCTTCACAAATTGCCTATGG+TGG | - | 32569:19131-19150 | MS.gene041600:intergenic | 45.0% | |
| CGAAGTCGCTATTATTGCCA+TGG | + | 32569:21522-21541 | MS.gene041600:CDS | 45.0% | |
| CGAGATAAATTGTGATGCCC+TGG | + | 32569:20632-20651 | MS.gene041600:CDS | 45.0% | |
| CGTAGATCAAAGCTCTTCTC+TGG | - | 32569:18260-18279 | MS.gene041600:intergenic | 45.0% | |
| CTTACAGTCATGAGTGATGC+AGG | - | 32569:21595-21614 | MS.gene041600:intergenic | 45.0% | |
| CTTCGGGCAGATTAAGAAGT+GGG | - | 32569:21507-21526 | MS.gene041600:intergenic | 45.0% | |
| GACGAATTCAGAAAGTTCCG+CGG | + | 32569:21545-21564 | MS.gene041600:CDS | 45.0% | |
| GAGTCACCAAAAGTCGTTGA+AGG | - | 32569:19614-19633 | MS.gene041600:intergenic | 45.0% | |
| GATAAATTGTGATGCCCTGG+TGG | + | 32569:20635-20654 | MS.gene041600:CDS | 45.0% | |
| GCTAGCAAGGTTGCAACAAT+TGG | + | 32569:21393-21412 | MS.gene041600:CDS | 45.0% | |
| GGAGCAATTGGTGGAAAGTT+TGG | + | 32569:21478-21497 | MS.gene041600:CDS | 45.0% | |
| GGGTTCATTTGGTAGAGTCT+TGG | + | 32569:19443-19462 | MS.gene041600:intron | 45.0% | |
| GGTACATACATTGGTGTGAG+AGG | + | 32569:18945-18964 | MS.gene041600:intron | 45.0% | |
| GTCTGTGGAACTGGAAAAGA+TGG | + | 32569:19824-19843 | MS.gene041600:CDS | 45.0% | |
| GTGGAACTGGAAAAGATGGA+AGG | + | 32569:19828-19847 | MS.gene041600:CDS | 45.0% | |
| GTTCCGAGGATATATGTGGT+GGG | + | 32569:21434-21453 | MS.gene041600:CDS | 45.0% | |
| TCAGCATGCAAAACAGCAGA+TGG | - | 32569:19908-19927 | MS.gene041600:intergenic | 45.0% | |
| TGAAGCAACTGTTCACAGAG+GGG | - | 32569:20761-20780 | MS.gene041600:intergenic | 45.0% | |
| TGCTGTAAGGAGTCTAGCAA+AGG | + | 32569:19778-19797 | MS.gene041600:CDS | 45.0% | |
| TGTCCCACCACATATATCCT+CGG | - | 32569:21440-21459 | MS.gene041600:intergenic | 45.0% | |
| TTCGGGCAGATTAAGAAGTG+GGG | - | 32569:21506-21525 | MS.gene041600:intergenic | 45.0% | |
| TTTGCTAGACTCCTTACAGC+AGG | - | 32569:19779-19798 | MS.gene041600:intergenic | 45.0% | |
| ! | GCATGTCCTTCAACGACTTT+TGG | + | 32569:19605-19624 | MS.gene041600:CDS | 45.0% |
| ! | GCTTTTCTGTCAACCACCAT+AGG | + | 32569:19115-19134 | MS.gene041600:intron | 45.0% |
| ! | GGTTGCACTCATTAGCCTAT+TGG | + | 32569:20980-20999 | MS.gene041600:intron | 45.0% |
| ! | TTGCAACCTTGCTAGCTCTT+TGG | - | 32569:21389-21408 | MS.gene041600:intergenic | 45.0% |
| !! | ACCTGTTTTGGACATTCCTG+CGG | + | 32569:18531-18550 | MS.gene041600:CDS | 45.0% |
| ACATCAACTATGTTCCCCGC+AGG | - | 32569:18550-18569 | MS.gene041600:intergenic | 50.0% | |
| ACATTGGTGTGAGAGGGGTT+GGG | + | 32569:18952-18971 | MS.gene041600:intron | 50.0% | |
| AGGACACGATACTTCCCCTT+AGG | + | 32569:19999-20018 | MS.gene041600:CDS | 50.0% | |
| AGGAGTCTAGCAAAGGAGCA+TGG | + | 32569:19785-19804 | MS.gene041600:CDS | 50.0% | |
| ATTGCGATGGCAACACCACA+TGG | + | 32569:21230-21249 | MS.gene041600:CDS | 50.0% | |
| CAGAGAGACGGAACAATCTC+TGG | - | 32569:18284-18303 | MS.gene041600:intergenic | 50.0% | |
| CTCTTCTCTGGCAAATCCGA+CGG | - | 32569:18248-18267 | MS.gene041600:intergenic | 50.0% | |
| CTGACCTTTACAATGTCGCC+AGG | - | 32569:18848-18867 | MS.gene041600:intergenic | 50.0% | |
| CTTCACCAGTCTGTGCCAAA+GGG | - | 32569:18573-18592 | MS.gene041600:intergenic | 50.0% | |
| GAACAGCTTCAGGGAGAAGA+AGG | + | 32569:19935-19954 | MS.gene041600:CDS | 50.0% | |
| GAGAAGGAGAGGGGTTCATT+TGG | + | 32569:19432-19451 | MS.gene041600:intron | 50.0% | |
| GCAGATCACAGAGTCTTGGA+CGG | + | 32569:21846-21865 | MS.gene041600:CDS | 50.0% | |
| GCCGAATATGATAAGGGGAC+AGG | - | 32569:20151-20170 | MS.gene041600:intergenic | 50.0% | |
| GGCAATTTGTGAAGGGATGC+TGG | + | 32569:19136-19155 | MS.gene041600:intron | 50.0% | |
| GTTCCGCGGTTTACTGATGA+TGG | + | 32569:21559-21578 | MS.gene041600:CDS | 50.0% | |
| TACATTGGTGTGAGAGGGGT+TGG | + | 32569:18951-18970 | MS.gene041600:intron | 50.0% | |
| TAGGGGATTCCAAAGAGCGA+TGG | + | 32569:20560-20579 | MS.gene041600:intron | 50.0% | |
| TCTTGTCATGGATGGAGGTG+AGG | + | 32569:20185-20204 | MS.gene041600:intron | 50.0% | |
| TGGTCCTGGCGACATTGTAA+AGG | + | 32569:18841-18860 | MS.gene041600:CDS | 50.0% | |
| TGGTGCAGATCACAGAGTCT+TGG | + | 32569:21842-21861 | MS.gene041600:CDS | 50.0% | |
| TTCGGCACAACTAGACCATG+TGG | - | 32569:21248-21267 | MS.gene041600:intergenic | 50.0% | |
| ! | ATTTGAAGCCACTCGGTAGC+AGG | + | 32569:20043-20062 | MS.gene041600:intron | 50.0% |
| ! | TTTGAAGCCACTCGGTAGCA+GGG | + | 32569:20044-20063 | MS.gene041600:intron | 50.0% |
| !! | ACGACGTTTTAAGCTCCACC+AGG | - | 32569:20653-20672 | MS.gene041600:intergenic | 50.0% |
| !! | AGTAGTATTGCTGATGGCGG+AGG | - | 32569:19214-19233 | MS.gene041600:intergenic | 50.0% |
| !! | CCTGTTTTGGACATTCCTGC+GGG | + | 32569:18532-18551 | MS.gene041600:CDS | 50.0% |
| !! | CGACGTTTTAAGCTCCACCA+GGG | - | 32569:20652-20671 | MS.gene041600:intergenic | 50.0% |
| !! | CTGTTTTGGACATTCCTGCG+GGG | + | 32569:18533-18552 | MS.gene041600:CDS | 50.0% |
| !! | GGAAGTATCGTGTCCTCAGA+AGG | - | 32569:19995-20014 | MS.gene041600:intergenic | 50.0% |
| CCCGCAGGAATGTCCAAAAC+AGG | - | 32569:18535-18554 | MS.gene041600:intergenic | 55.0% | |
| CCTTCACCAGTCTGTGCCAA+AGG | - | 32569:18574-18593 | MS.gene041600:intergenic | 55.0% | |
| CCTTTGGCACAGACTGGTGA+AGG | + | 32569:18571-18590 | MS.gene041600:CDS | 55.0% | |
| CTCTTATCCCTGCTACCGAG+TGG | - | 32569:20054-20073 | MS.gene041600:intergenic | 55.0% | |
| GATGTCCCTTTGGCACAGAC+TGG | + | 32569:18565-18584 | MS.gene041600:CDS | 55.0% | |
| GTCACGCCATTCCTCCATAG+CGG | - | 32569:19094-19113 | MS.gene041600:intergenic | 55.0% | |
| TTGTGAAGGGATGCTGGCCA+TGG | + | 32569:19142-19161 | MS.gene041600:intron | 55.0% | |
| !! | ATGGTGCCGCTATGGAGGAA+TGG | + | 32569:19085-19104 | MS.gene041600:intron | 55.0% |
| CCTCCATAGCGGCACCATTG+TGG | - | 32569:19083-19102 | MS.gene041600:intergenic | 60.0% | |
| GTCATGGATGGAGGTGAGGC+TGG | + | 32569:20189-20208 | MS.gene041600:intron | 60.0% | |
| TGAAGGGATGCTGGCCATGG+TGG | + | 32569:19145-19164 | MS.gene041600:intron | 60.0% | |
| TTGGTGTGAGAGGGGTTGGG+AGG | + | 32569:18955-18974 | MS.gene041600:intron | 60.0% | |
| !! | CCACAATGGTGCCGCTATGG+AGG | + | 32569:19080-19099 | MS.gene041600:intron | 60.0% |
| !! | TGGCCACAATGGTGCCGCTA+TGG | + | 32569:19077-19096 | MS.gene041600:intron | 60.0% |
| TGTGGCCTATGGCGCCACCA+TGG | - | 32569:19162-19181 | MS.gene041600:intergenic | 65.0% | |
| ! | GCTGGCCATGGTGGCGCCAT+AGG | + | 32569:19154-19173 | MS.gene041600:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32569 | gene | 18237 | 21947 | 18237 | ID=MS.gene041600 |
| 32569 | mRNA | 18237 | 21947 | 18237 | ID=MS.gene041600.t1;Parent=MS.gene041600 |
| 32569 | exon | 18237 | 18350 | 18237 | ID=MS.gene041600.t1.exon1;Parent=MS.gene041600.t1 |
| 32569 | CDS | 18237 | 18350 | 18237 | ID=cds.MS.gene041600.t1;Parent=MS.gene041600.t1 |
| 32569 | exon | 18490 | 18633 | 18490 | ID=MS.gene041600.t1.exon2;Parent=MS.gene041600.t1 |
| 32569 | CDS | 18490 | 18633 | 18490 | ID=cds.MS.gene041600.t1;Parent=MS.gene041600.t1 |
| 32569 | exon | 18737 | 18862 | 18737 | ID=MS.gene041600.t1.exon3;Parent=MS.gene041600.t1 |
| 32569 | CDS | 18737 | 18862 | 18737 | ID=cds.MS.gene041600.t1;Parent=MS.gene041600.t1 |
| 32569 | exon | 19566 | 20020 | 19566 | ID=MS.gene041600.t1.exon4;Parent=MS.gene041600.t1 |
| 32569 | CDS | 19566 | 20020 | 19566 | ID=cds.MS.gene041600.t1;Parent=MS.gene041600.t1 |
| 32569 | exon | 20563 | 20810 | 20563 | ID=MS.gene041600.t1.exon5;Parent=MS.gene041600.t1 |
| 32569 | CDS | 20563 | 20810 | 20563 | ID=cds.MS.gene041600.t1;Parent=MS.gene041600.t1 |
| 32569 | exon | 21213 | 21301 | 21213 | ID=MS.gene041600.t1.exon6;Parent=MS.gene041600.t1 |
| 32569 | CDS | 21213 | 21301 | 21213 | ID=cds.MS.gene041600.t1;Parent=MS.gene041600.t1 |
| 32569 | exon | 21382 | 21609 | 21382 | ID=MS.gene041600.t1.exon7;Parent=MS.gene041600.t1 |
| 32569 | CDS | 21382 | 21609 | 21382 | ID=cds.MS.gene041600.t1;Parent=MS.gene041600.t1 |
| 32569 | exon | 21834 | 21947 | 21834 | ID=MS.gene041600.t1.exon8;Parent=MS.gene041600.t1 |
| 32569 | CDS | 21834 | 21947 | 21834 | ID=cds.MS.gene041600.t1;Parent=MS.gene041600.t1 |
| Gene Sequence |
| Protein sequence |
