Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80759.t1 | XP_003604926.1 | 98.3 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 3.00E-205 | 724.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80759.t1 | Q9SAV3 | 93.8 | 323 | 20 | 0 | 36 | 358 | 30 | 352 | 2.4e-182 | 639.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80759.t1 | G7JTF7 | 98.3 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 2.2e-205 | 724.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80759 | MS.gene035365 | PPI |
| MS.gene80759 | MS.gene08312 | PPI |
| MS.gene97445 | MS.gene80759 | PPI |
| MS.gene70694 | MS.gene80759 | PPI |
| MS.gene80759 | MS.gene28855 | PPI |
| MS.gene80759 | MS.gene050322 | PPI |
| MS.gene023314 | MS.gene80759 | PPI |
| MS.gene041600 | MS.gene80759 | PPI |
| MS.gene066363 | MS.gene80759 | PPI |
| MS.gene80759 | MS.gene035364 | PPI |
| MS.gene80759 | MS.gene007227 | PPI |
| MS.gene80759 | MS.gene000681 | PPI |
| MS.gene80759 | MS.gene34923 | PPI |
| MS.gene80759 | MS.gene041602 | PPI |
| MS.gene022368 | MS.gene80759 | PPI |
| MS.gene80759 | MS.gene54337 | PPI |
| MS.gene80759 | MS.gene000331 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80759.t1 | MTR_4g021470 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 728 |
| MS.gene80759.t1 | MTR_7g005380 | 36.697 | 327 | 200 | 4 | 33 | 353 | 23 | 348 | 6.69e-70 | 223 |
| MS.gene80759.t1 | MTR_3g076630 | 38.255 | 298 | 181 | 3 | 38 | 334 | 83 | 378 | 4.76e-62 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80759.t1 | AT1G55510 | 90.828 | 338 | 30 | 1 | 21 | 358 | 16 | 352 | 0.0 | 642 |
| MS.gene80759.t1 | AT3G13450 | 90.332 | 331 | 31 | 1 | 28 | 358 | 29 | 358 | 0.0 | 632 |
| MS.gene80759.t1 | AT5G50850 | 38.037 | 326 | 195 | 4 | 34 | 353 | 32 | 356 | 1.12e-72 | 230 |
| MS.gene80759.t1 | AT1G30120 | 39.677 | 310 | 183 | 4 | 26 | 334 | 75 | 381 | 1.48e-67 | 218 |
| MS.gene80759.t1 | AT2G34590 | 38.369 | 331 | 193 | 5 | 13 | 334 | 53 | 381 | 2.28e-66 | 215 |
Find 90 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACAAGTCACCTTATTCT+TGG | 0.245214 | 4.4:-80413723 | None:intergenic |
| CTTTACCGCCACAATTAAAT+TGG | 0.260322 | 4.4:-80410954 | None:intergenic |
| GCTTTCTTCTGTCATGTTCC+TGG | 0.276789 | 4.4:+80411138 | MS.gene80759:CDS |
| GGGAGCTCAATTGTCTATTA+TGG | 0.283147 | 4.4:+80412222 | MS.gene80759:CDS |
| ATTGGGAAAATGGGTGTCTT+TGG | 0.284758 | 4.4:+80408509 | MS.gene80759:CDS |
| GTGTAAAGAGATTGGGAAAA+TGG | 0.299874 | 4.4:+80408499 | MS.gene80759:CDS |
| GGTACCTCAGCTTCAGATAA+AGG | 0.302451 | 4.4:-80412073 | None:intergenic |
| TTAACAATTAGAACCCCTTA+TGG | 0.304867 | 4.4:+80411072 | MS.gene80759:CDS |
| GCTCCGGTGACCGGAGGATT+TGG | 0.323075 | 4.4:+80412888 | MS.gene80759:CDS |
| CTTGATTAATAGCAGAATAA+AGG | 0.338144 | 4.4:-80408605 | None:intergenic |
| GGTGTGTTCCGTTGCACAAC+TGG | 0.365452 | 4.4:+80410286 | MS.gene80759:CDS |
| GTACATGCCAACCAAGAATA+AGG | 0.366014 | 4.4:+80413712 | MS.gene80759:CDS |
| GGTATCGTTGGCTTTGGAAT+TGG | 0.380330 | 4.4:+80410609 | MS.gene80759:CDS |
| TCAAGCTCTTCATATTGCTT+TGG | 0.381002 | 4.4:+80408623 | MS.gene80759:CDS |
| AATGGGTGTCTTTGGTTTCA+AGG | 0.408690 | 4.4:+80408517 | MS.gene80759:CDS |
| GGAGAAGATGTAGGCTTTGG+TGG | 0.409447 | 4.4:+80410265 | MS.gene80759:CDS |
| GTCACCATGTGTAAAGAGAT+TGG | 0.414268 | 4.4:+80408491 | MS.gene80759:CDS |
| GGAAGCGATATTACACTTGT+TGG | 0.415313 | 4.4:+80412196 | MS.gene80759:CDS |
| ATCTGAAGACACTAATTCCT+TGG | 0.418114 | 4.4:+80412726 | MS.gene80759:CDS |
| CAATACTCCTCTTTGTGAGC+AGG | 0.420406 | 4.4:+80410342 | MS.gene80759:CDS |
| CGTTGGCTTTGGAATTGGTC+TGG | 0.421778 | 4.4:+80410614 | MS.gene80759:CDS |
| TCACAGGGTATCGTTGGCTT+TGG | 0.421915 | 4.4:+80410603 | MS.gene80759:intron |
| TTTGCTTCCTTTGGACTTCG+AGG | 0.429912 | 4.4:-80411839 | None:intergenic |
| ACTGGATTAGCAGACCGATT+TGG | 0.437170 | 4.4:+80410304 | MS.gene80759:CDS |
| ATTCTTGGTTGGCATGTACA+AGG | 0.438995 | 4.4:-80413708 | None:intergenic |
| GGTGTCTTTGGTTTCAAGGA+GGG | 0.441850 | 4.4:+80408521 | MS.gene80759:CDS |
| TTTGGAGAAGATGTAGGCTT+TGG | 0.451573 | 4.4:+80410262 | MS.gene80759:CDS |
| TGGAATTGGTCTGGCAGCTA+TGG | 0.452161 | 4.4:+80410623 | MS.gene80759:CDS |
| CATGGCCAACAGCTCCATAA+GGG | 0.452887 | 4.4:-80411086 | None:intergenic |
| CGAAGTCCAAAGGAAGCAAA+AGG | 0.458646 | 4.4:+80411842 | MS.gene80759:CDS |
| TCACCATGTGTAAAGAGATT+GGG | 0.468146 | 4.4:+80408492 | MS.gene80759:CDS |
| AGACCACAAACTCTTGCTAC+AGG | 0.470899 | 4.4:-80413656 | None:intergenic |
| TTCTTGAACGCTGCTTCTCA+AGG | 0.473251 | 4.4:+80412931 | MS.gene80759:CDS |
| CCATGGCCAACAGCTCCATA+AGG | 0.473283 | 4.4:-80411087 | None:intergenic |
| CAAGTCACCTTATTCTTGGT+TGG | 0.475955 | 4.4:-80413719 | None:intergenic |
| TTGCTTCCTTTGGACTTCGA+GGG | 0.478535 | 4.4:-80411838 | None:intergenic |
| GTCAACTTCCATTGTTCAGA+AGG | 0.479003 | 4.4:+80408548 | MS.gene80759:CDS |
| TGCTACTCACAGGGTATCGT+TGG | 0.484434 | 4.4:+80410597 | MS.gene80759:intron |
| GCCCCTGTAGCAAGAGTTTG+TGG | 0.487322 | 4.4:+80413653 | MS.gene80759:CDS |
| CGATATTACACTTGTTGGAT+GGG | 0.488766 | 4.4:+80412201 | MS.gene80759:CDS |
| GGTTCGAAAACAAGAGGAAA+AGG | 0.492316 | 4.4:-80413686 | None:intergenic |
| AAGCTGCTAAGTTTAGATAT+CGG | 0.493249 | 4.4:+80410923 | MS.gene80759:CDS |
| GCGATATTACACTTGTTGGA+TGG | 0.493378 | 4.4:+80412200 | MS.gene80759:CDS |
| AGTCATGAAGCTCCGGTGAC+CGG | 0.504899 | 4.4:+80412879 | MS.gene80759:CDS |
| GTGTCTTTGGTTTCAAGGAG+GGG | 0.506919 | 4.4:+80408522 | MS.gene80759:CDS |
| TGTAAAGAGATTGGGAAAAT+GGG | 0.507141 | 4.4:+80408500 | MS.gene80759:CDS |
| TGAGAAGCAGCGTTCAAGAA+TGG | 0.508954 | 4.4:-80412928 | None:intergenic |
| AAGGATGCTGCTGCTGAGAA+TGG | 0.512633 | 4.4:+80408567 | MS.gene80759:CDS |
| TCTGAAGACACTAATTCCTT+GGG | 0.514920 | 4.4:+80412727 | MS.gene80759:CDS |
| TGCAAACTGGATTTCAGCTA+TGG | 0.519711 | 4.4:-80410781 | None:intergenic |
| TCCACAGTTTCTTTATCCCA+AGG | 0.519849 | 4.4:-80412743 | None:intergenic |
| GCACCAAATCCTCCGGTCAC+CGG | 0.522916 | 4.4:-80412891 | None:intergenic |
| AGAACCCCTTATGGAGCTGT+TGG | 0.527687 | 4.4:+80411081 | MS.gene80759:CDS |
| ACATGACAGAAGAAAGCCTC+AGG | 0.547527 | 4.4:-80411132 | None:intergenic |
| CCTTATGGAGCTGTTGGCCA+TGG | 0.547588 | 4.4:+80411087 | MS.gene80759:CDS |
| TTCTTGGTTGGCATGTACAA+GGG | 0.553458 | 4.4:-80413707 | None:intergenic |
| TATGGAGCTGTTGGCCATGG+TGG | 0.555046 | 4.4:+80411090 | MS.gene80759:CDS |
| GAGCATGCCTGATCAAAAGC+AGG | 0.557132 | 4.4:-80410816 | None:intergenic |
| GACCACAAACTCTTGCTACA+GGG | 0.562598 | 4.4:-80413655 | None:intergenic |
| TTTGGCCGTTGAAGAAGTAC+CGG | 0.563379 | 4.4:+80412033 | MS.gene80759:CDS |
| GGCAACATGTAATCATCCTC+CGG | 0.568936 | 4.4:-80412052 | None:intergenic |
| TTGCTTTGGACACTGATCCT+CGG | 0.570770 | 4.4:+80408637 | MS.gene80759:CDS |
| GTAGATTAGTCATGAAGCTC+CGG | 0.571967 | 4.4:+80412872 | MS.gene80759:intron |
| GATTTCAGCACCAAATCCTC+CGG | 0.578711 | 4.4:-80412898 | None:intergenic |
| AGCGGAAACCAATTTAATTG+TGG | 0.579737 | 4.4:+80410946 | MS.gene80759:CDS |
| ATCCTCCGGTACTTCTTCAA+CGG | 0.580188 | 4.4:-80412038 | None:intergenic |
| TTTCCCAATCTCTTTACACA+TGG | 0.594703 | 4.4:-80408495 | None:intergenic |
| CTGCTAATCCAGTTGTGCAA+CGG | 0.596759 | 4.4:-80410294 | None:intergenic |
| TCTTGAACGCTGCTTCTCAA+GGG | 0.599173 | 4.4:+80412932 | MS.gene80759:CDS |
| CTCACGCAGGTGATTCGAGA+AGG | 0.604024 | 4.4:+80412175 | MS.gene80759:intron |
| GGGTGTCTTTGGTTTCAAGG+AGG | 0.605174 | 4.4:+80408520 | MS.gene80759:CDS |
| GAAGTCCAAAGGAAGCAAAA+GGG | 0.605180 | 4.4:+80411843 | MS.gene80759:CDS |
| TACAAGGGTTCGAAAACAAG+AGG | 0.607254 | 4.4:-80413692 | None:intergenic |
| AGCAGCATCCTTCTGAACAA+TGG | 0.609794 | 4.4:-80408556 | None:intergenic |
| ACCACAAACTCTTGCTACAG+GGG | 0.612361 | 4.4:-80413654 | None:intergenic |
| GGAAACCAATTTAATTGTGG+CGG | 0.612450 | 4.4:+80410949 | MS.gene80759:CDS |
| TCATATACCTGCTCACAAAG+AGG | 0.612626 | 4.4:-80410349 | None:intergenic |
| AAACACCATACTTTGATACC+AGG | 0.615715 | 4.4:-80411156 | None:intergenic |
| GATATTACACTTGTTGGATG+GGG | 0.617699 | 4.4:+80412202 | MS.gene80759:CDS |
| TGTCATCCCTCGAAGTCCAA+AGG | 0.623687 | 4.4:+80411832 | MS.gene80759:CDS |
| AAGCCTCAGGAGATTGAGAG+TGG | 0.639692 | 4.4:-80411119 | None:intergenic |
| GGCCGTTGAAGAAGTACCGG+AGG | 0.639786 | 4.4:+80412036 | MS.gene80759:CDS |
| CATGAAGCTCCGGTGACCGG+AGG | 0.641182 | 4.4:+80412882 | MS.gene80759:CDS |
| GTTGCCTTTATCTGAAGCTG+AGG | 0.646371 | 4.4:+80412069 | MS.gene80759:CDS |
| TCCTTGGGATAAAGAAACTG+TGG | 0.648165 | 4.4:+80412742 | MS.gene80759:CDS |
| ATGGCCAACAGCTCCATAAG+GGG | 0.659107 | 4.4:-80411085 | None:intergenic |
| TTACCACTCTCAATCTCCTG+AGG | 0.681438 | 4.4:+80411116 | MS.gene80759:CDS |
| TTGGGATAAAGAAACTGTGG+AGG | 0.692494 | 4.4:+80412745 | MS.gene80759:CDS |
| GAGAGTGGTAATGTCCACCA+TGG | 0.697263 | 4.4:-80411104 | None:intergenic |
| GCTAAGTTTAGATATCGGAG+CGG | 0.765266 | 4.4:+80410928 | MS.gene80759:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTGTTTAAACTTTTA+AGG | + | chr4.4:80411296-80411315 | MS.gene80759:intron | 10.0% |
| !! | AAAATTTAAGTCTTAGAATT+TGG | + | chr4.4:80409552-80409571 | MS.gene80759:intron | 15.0% |
| !! | AAATTTAAGTCTTAGAATTT+GGG | + | chr4.4:80409553-80409572 | MS.gene80759:intron | 15.0% |
| !! | ATTGATAAATTTGAAGATAA+TGG | - | chr4.4:80410115-80410134 | None:intergenic | 15.0% |
| !! | TTTATATATCAGAATTTAAG+AGG | + | chr4.4:80410724-80410743 | MS.gene80759:intron | 15.0% |
| !!! | AATTTTTGAAATTACTGATT+AGG | - | chr4.4:80410567-80410586 | None:intergenic | 15.0% |
| !!! | ATTTGATAATTATAAATCTG+TGG | + | chr4.4:80413258-80413277 | MS.gene80759:intron | 15.0% |
| !!! | TTTTAAAATGTTTTACACAA+AGG | - | chr4.4:80409536-80409555 | None:intergenic | 15.0% |
| !! | AATATATTACTATAGTTGAG+AGG | + | chr4.4:80412606-80412625 | MS.gene80759:intron | 20.0% |
| !! | AATTTCGTAATAAAGGTTAA+TGG | - | chr4.4:80409140-80409159 | None:intergenic | 20.0% |
| !! | ACTTCAAGTAAAAATTCTTT+AGG | + | chr4.4:80412979-80412998 | MS.gene80759:intron | 20.0% |
| !! | ATAACAGACATATTCTTATA+TGG | - | chr4.4:80409232-80409251 | None:intergenic | 20.0% |
| !! | ATGAAAATTAAAAACACACA+AGG | + | chr4.4:80410438-80410457 | MS.gene80759:intron | 20.0% |
| !! | ATGTTATTGTTACAAAACTT+AGG | + | chr4.4:80409250-80409269 | MS.gene80759:intron | 20.0% |
| !! | CTTCAAGTAAAAATTCTTTA+GGG | + | chr4.4:80412980-80412999 | MS.gene80759:intron | 20.0% |
| !! | GGTACTATTATTAATTAAAG+TGG | - | chr4.4:80413571-80413590 | None:intergenic | 20.0% |
| !! | GTAATGTTACTAATATGATA+TGG | - | chr4.4:80411592-80411611 | None:intergenic | 20.0% |
| !! | TAAATTCATCTTTACCAATT+TGG | + | chr4.4:80413406-80413425 | MS.gene80759:intron | 20.0% |
| !! | TCATATATTACACTTCTTAA+TGG | + | chr4.4:80409952-80409971 | MS.gene80759:intron | 20.0% |
| !! | TTTATATAACAAATGGAATG+CGG | + | chr4.4:80409634-80409653 | MS.gene80759:intron | 20.0% |
| !!! | AATCTCGTAAATAATTTTGA+TGG | + | chr4.4:80412373-80412392 | MS.gene80759:intron | 20.0% |
| !!! | ATGTCTTTTATATTAGGAAT+AGG | - | chr4.4:80413594-80413613 | None:intergenic | 20.0% |
| !!! | ATGTGTTTTATTTTTTTCAG+TGG | + | chr4.4:80412002-80412021 | MS.gene80759:intron | 20.0% |
| !!! | ATTGTGTTTCTTCTTTTTAT+TGG | + | chr4.4:80410501-80410520 | MS.gene80759:intron | 20.0% |
| !!! | ATTTTATTACGAAATTTTGC+AGG | + | chr4.4:80412679-80412698 | MS.gene80759:intron | 20.0% |
| !!! | TAAGCTTTATGTTTAGATTA+GGG | + | chr4.4:80409427-80409446 | MS.gene80759:intron | 20.0% |
| !!! | TGTCTTTTATATTAGGAATA+GGG | - | chr4.4:80413593-80413612 | None:intergenic | 20.0% |
| !!! | TTAAGCTTTATGTTTAGATT+AGG | + | chr4.4:80409426-80409445 | MS.gene80759:intron | 20.0% |
| !!! | TTATTTACAACCTCATTTTT+TGG | + | chr4.4:80411198-80411217 | MS.gene80759:intron | 20.0% |
| !!! | TTCATTTCTTTTTCTTTATC+AGG | + | chr4.4:80408669-80408688 | MS.gene80759:intron | 20.0% |
| ! | AAAACTTAGACCATATTTCT+AGG | + | chr4.4:80409760-80409779 | MS.gene80759:intron | 25.0% |
| ! | AAATGCAAAAGGAGAATATA+AGG | - | chr4.4:80410224-80410243 | None:intergenic | 25.0% |
| ! | AACTATAGTAATATATTCCC+AGG | - | chr4.4:80412603-80412622 | None:intergenic | 25.0% |
| ! | AATTACATCTAGTACTAAGT+TGG | + | chr4.4:80411725-80411744 | MS.gene80759:intron | 25.0% |
| ! | ACTATAGTAATATATTCCCA+GGG | - | chr4.4:80412602-80412621 | None:intergenic | 25.0% |
| ! | CTTGATTAATAGCAGAATAA+AGG | - | chr4.4:80408608-80408627 | None:intergenic | 25.0% |
| ! | GAATATAAGAATTCAACCTT+TGG | - | chr4.4:80411917-80411936 | None:intergenic | 25.0% |
| ! | GATACTTATATTGGCAAATT+TGG | - | chr4.4:80410191-80410210 | None:intergenic | 25.0% |
| ! | GATCTATAAATTTGACGTAA+CGG | - | chr4.4:80411007-80411026 | None:intergenic | 25.0% |
| ! | TAGATTAGGGGATTATATTA+GGG | + | chr4.4:80409440-80409459 | MS.gene80759:intron | 25.0% |
| ! | TCAAATAAGCGATACTTATA+AGG | - | chr4.4:80410166-80410185 | None:intergenic | 25.0% |
| ! | TCAACGAAATTTCGTAATAA+AGG | - | chr4.4:80409147-80409166 | None:intergenic | 25.0% |
| ! | TCAGTTCTCATAAATCTTAA+AGG | - | chr4.4:80411655-80411674 | None:intergenic | 25.0% |
| ! | TCGAAAAATACAATAGGATT+CGG | - | chr4.4:80411893-80411912 | None:intergenic | 25.0% |
| ! | TGGTTAATTATATCTTGTGA+TGG | + | chr4.4:80412415-80412434 | MS.gene80759:intron | 25.0% |
| ! | TGTGATACAAAACAAAACTT+AGG | + | chr4.4:80408804-80408823 | MS.gene80759:intron | 25.0% |
| ! | TTAGATTAGGGGATTATATT+AGG | + | chr4.4:80409439-80409458 | MS.gene80759:intron | 25.0% |
| ! | TTCAGGTGTTTAAATATACA+TGG | + | chr4.4:80412523-80412542 | MS.gene80759:intron | 25.0% |
| ! | TTGATACCATCTTAGAATTT+GGG | + | chr4.4:80409719-80409738 | MS.gene80759:intron | 25.0% |
| ! | TTGGCTATTCAAATAGATAT+TGG | - | chr4.4:80413206-80413225 | None:intergenic | 25.0% |
| ! | TTTGACAAACATAAAGTAGA+AGG | - | chr4.4:80409404-80409423 | None:intergenic | 25.0% |
| ! | TTTGATACCATCTTAGAATT+TGG | + | chr4.4:80409718-80409737 | MS.gene80759:intron | 25.0% |
| !! | AAGCTTTATGTTTAGATTAG+GGG | + | chr4.4:80409428-80409447 | MS.gene80759:intron | 25.0% |
| !! | GTCTTTTATATTAGGAATAG+GGG | - | chr4.4:80413592-80413611 | None:intergenic | 25.0% |
| !! | TATATATTTGAGTTCATCAG+TGG | + | chr4.4:80409911-80409930 | MS.gene80759:intron | 25.0% |
| !! | TCAGACATGTCTTTTATATT+AGG | - | chr4.4:80413600-80413619 | None:intergenic | 25.0% |
| !! | TTTGGTTCGAAAAATACAAT+AGG | - | chr4.4:80411899-80411918 | None:intergenic | 25.0% |
| !!! | AAACCCTATTTTTACCAAAT+CGG | - | chr4.4:80410321-80410340 | None:intergenic | 25.0% |
| !!! | AAACTTTTTCACATTCTTGT+AGG | + | chr4.4:80411048-80411067 | MS.gene80759:intron | 25.0% |
| !!! | AACAAAAGTACCAAAAAATG+AGG | - | chr4.4:80411211-80411230 | None:intergenic | 25.0% |
| !!! | AATTTTGAAGTATTGATCCA+CGG | + | chr4.4:80409185-80409204 | MS.gene80759:intron | 25.0% |
| !!! | ATATGGTCTAAGTTTTAGAA+TGG | - | chr4.4:80409756-80409775 | None:intergenic | 25.0% |
| !!! | CCATTTGTTATATAAAGCTT+GGG | - | chr4.4:80409630-80409649 | None:intergenic | 25.0% |
| !!! | CTGTTTTGAATTGTTATACT+AGG | + | chr4.4:80408862-80408881 | MS.gene80759:intron | 25.0% |
| !!! | TATTGTATTTTTCGAACCAA+AGG | + | chr4.4:80411898-80411917 | MS.gene80759:CDS | 25.0% |
| !!! | TCAAGCAATTTGAGATTTTT+TGG | - | chr4.4:80413154-80413173 | None:intergenic | 25.0% |
| !!! | TCCATTTGTTATATAAAGCT+TGG | - | chr4.4:80409631-80409650 | None:intergenic | 25.0% |
| !!! | TTTGTGGTAATTTTAAGTAC+TGG | - | chr4.4:80408951-80408970 | None:intergenic | 25.0% |
| AAATGAGACCGTATCTTTAT+GGG | - | chr4.4:80413314-80413333 | None:intergenic | 30.0% | |
| AAGCTGCTAAGTTTAGATAT+CGG | + | chr4.4:80410923-80410942 | MS.gene80759:CDS | 30.0% | |
| AATAGCTTGATCATCAAAGT+AGG | + | chr4.4:80411345-80411364 | MS.gene80759:intron | 30.0% | |
| AGCCAAATATATTGACATGA+TGG | + | chr4.4:80413220-80413239 | MS.gene80759:intron | 30.0% | |
| ATCATCAAAGTAGGAATATC+AGG | + | chr4.4:80411354-80411373 | MS.gene80759:intron | 30.0% | |
| ATGCTGTCACAGATTTATAA+CGG | - | chr4.4:80413104-80413123 | None:intergenic | 30.0% | |
| ATTGCAAATGACACAGTAAA+GGG | - | chr4.4:80409286-80409305 | None:intergenic | 30.0% | |
| CAAACTGCAATTACAAATTG+TGG | - | chr4.4:80412559-80412578 | None:intergenic | 30.0% | |
| CTATACCAAAAACATTCTTG+AGG | - | chr4.4:80411810-80411829 | None:intergenic | 30.0% | |
| GAAAAATGTAATCTGCAAAC+TGG | - | chr4.4:80410797-80410816 | None:intergenic | 30.0% | |
| GAACTCAAATATATAGCTTC+CGG | - | chr4.4:80409906-80409925 | None:intergenic | 30.0% | |
| GATTATATCAGATTGCAGTA+AGG | - | chr4.4:80410695-80410714 | None:intergenic | 30.0% | |
| GCCAAATATATTGACATGAT+GGG | + | chr4.4:80413221-80413240 | MS.gene80759:intron | 30.0% | |
| GGTACGAGTAAAATAACAAT+CGG | + | chr4.4:80413543-80413562 | MS.gene80759:intron | 30.0% | |
| GTTAATGCAGTTCAAATACA+TGG | + | chr4.4:80412395-80412414 | MS.gene80759:intron | 30.0% | |
| TAAATGAGACCGTATCTTTA+TGG | - | chr4.4:80413315-80413334 | None:intergenic | 30.0% | |
| TCATCAAAGTAGGAATATCA+GGG | + | chr4.4:80411355-80411374 | MS.gene80759:intron | 30.0% | |
| TCATTTGATCATGCAGATAT+TGG | + | chr4.4:80413813-80413832 | MS.gene80759:intron | 30.0% | |
| TCCCATCATGTCAATATATT+TGG | - | chr4.4:80413225-80413244 | None:intergenic | 30.0% | |
| TCTTGTATTTATATGCTGCA+TGG | + | chr4.4:80413758-80413777 | MS.gene80759:intron | 30.0% | |
| TGAAGTTATGAGCTAAAAGT+TGG | - | chr4.4:80412965-80412984 | None:intergenic | 30.0% | |
| TGAGATCACAGAAAAGTTTA+GGG | + | chr4.4:80409347-80409366 | MS.gene80759:intron | 30.0% | |
| TGTAAAGAGATTGGGAAAAT+GGG | + | chr4.4:80408500-80408519 | MS.gene80759:CDS | 30.0% | |
| TGTACAGAGGATACTTATAT+TGG | - | chr4.4:80410200-80410219 | None:intergenic | 30.0% | |
| TTAACAATTAGAACCCCTTA+TGG | + | chr4.4:80411072-80411091 | MS.gene80759:CDS | 30.0% | |
| TTAAGTCTTAGAATTTGGGT+TGG | + | chr4.4:80409557-80409576 | MS.gene80759:intron | 30.0% | |
| TTCATTGCAGACTCATTTAA+GGG | - | chr4.4:80409807-80409826 | None:intergenic | 30.0% | |
| TTGTAAGCAGCTTAATCATT+TGG | - | chr4.4:80411249-80411268 | None:intergenic | 30.0% | |
| TTGTGTTAGTAAAACAACTC+TGG | + | chr4.4:80410392-80410411 | MS.gene80759:intron | 30.0% | |
| TTTACCAATTTGGAAAAGCA+AGG | + | chr4.4:80413416-80413435 | MS.gene80759:intron | 30.0% | |
| ! | AAATGCCTCAAGAATGTTTT+TGG | + | chr4.4:80411802-80411821 | MS.gene80759:intron | 30.0% |
| ! | ATATGGATTACCTTCAAAAG+TGG | - | chr4.4:80409215-80409234 | None:intergenic | 30.0% |
| ! | ATGCTCTCTTTATAAGGTTT+TGG | + | chr4.4:80410833-80410852 | MS.gene80759:intron | 30.0% |
| ! | CAAAGTATGGTGTTTTCATT+TGG | + | chr4.4:80411164-80411183 | MS.gene80759:intron | 30.0% |
| ! | CCCAAGCTTTATATAACAAA+TGG | + | chr4.4:80409627-80409646 | MS.gene80759:intron | 30.0% |
| ! | TAAACTTTTCTGTGATCTCA+CGG | - | chr4.4:80409347-80409366 | None:intergenic | 30.0% |
| ! | TATTACGAAATTTTGCAGGA+GGG | + | chr4.4:80412683-80412702 | MS.gene80759:intron | 30.0% |
| ! | TTAAAGCTGAATTTCTAGAG+AGG | + | chr4.4:80409695-80409714 | MS.gene80759:intron | 30.0% |
| ! | TTAGGGCATAGTTTATGTTT+TGG | + | chr4.4:80412997-80413016 | MS.gene80759:intron | 30.0% |
| ! | TTATTACGAAATTTTGCAGG+AGG | + | chr4.4:80412682-80412701 | MS.gene80759:intron | 30.0% |
| !! | AGACCGATTTGGTAAAAATA+GGG | + | chr4.4:80410315-80410334 | MS.gene80759:CDS | 30.0% |
| !! | GAGTTGTTTTACTAACACAA+AGG | - | chr4.4:80410392-80410411 | None:intergenic | 30.0% |
| !! | TACAATTTTTCGATTTCCCT+GGG | + | chr4.4:80412583-80412602 | MS.gene80759:intron | 30.0% |
| !! | TCAATCGTCTTTAGAATTTG+TGG | - | chr4.4:80408967-80408986 | None:intergenic | 30.0% |
| !! | TTACAATTTTTCGATTTCCC+TGG | + | chr4.4:80412582-80412601 | MS.gene80759:intron | 30.0% |
| !!! | CTAAGTTTTAGAATGGAGTT+AGG | - | chr4.4:80409749-80409768 | None:intergenic | 30.0% |
| !!! | CTCAAGAATGTTTTTGGTAT+AGG | + | chr4.4:80411808-80411827 | MS.gene80759:intron | 30.0% |
| !!! | CTCTTTATAAGGTTTTGGTT+AGG | + | chr4.4:80410838-80410857 | MS.gene80759:intron | 30.0% |
| !!! | TATGTTTTTGGAGAAGATGT+AGG | + | chr4.4:80410256-80410275 | MS.gene80759:CDS | 30.0% |
| !!! | TCTGTGAGATTTTTTTAACG+AGG | - | chr4.4:80410474-80410493 | None:intergenic | 30.0% |
| AAACACCATACTTTGATACC+AGG | - | chr4.4:80411159-80411178 | None:intergenic | 35.0% | |
| ACATTGAATTGCTACTCACA+GGG | + | chr4.4:80410588-80410607 | MS.gene80759:intron | 35.0% | |
| ACTTTCTGATTCAAAGCAAC+AGG | - | chr4.4:80412281-80412300 | None:intergenic | 35.0% | |
| AGATCACAGAAAAGTTTAGG+GGG | + | chr4.4:80409349-80409368 | MS.gene80759:intron | 35.0% | |
| AGCGGAAACCAATTTAATTG+TGG | + | chr4.4:80410946-80410965 | MS.gene80759:CDS | 35.0% | |
| AGGTGGAATTTCCAATACAA+AGG | + | chr4.4:80409874-80409893 | MS.gene80759:intron | 35.0% | |
| ATCCATGTCTAGAAATCTAG+AGG | + | chr4.4:80412634-80412653 | MS.gene80759:intron | 35.0% | |
| ATCTGAAGACACTAATTCCT+TGG | + | chr4.4:80412726-80412745 | MS.gene80759:CDS | 35.0% | |
| ATGTTCCTGGTATCAAAGTA+TGG | + | chr4.4:80411151-80411170 | MS.gene80759:intron | 35.0% | |
| ATTAATGAGTTGCAACACCT+TGG | - | chr4.4:80412453-80412472 | None:intergenic | 35.0% | |
| ATTTAAACACCTGAAAACCG+TGG | - | chr4.4:80412518-80412537 | None:intergenic | 35.0% | |
| ATTTATGAGAACTGAGATGC+TGG | + | chr4.4:80411660-80411679 | MS.gene80759:intron | 35.0% | |
| CAAACAAGTCACCTTATTCT+TGG | - | chr4.4:80413726-80413745 | None:intergenic | 35.0% | |
| CATTGCAAATGACACAGTAA+AGG | - | chr4.4:80409287-80409306 | None:intergenic | 35.0% | |
| CTCAAATTGCTTGAGAATTG+AGG | + | chr4.4:80413160-80413179 | MS.gene80759:intron | 35.0% | |
| CTCTAACTGTATCACAAAAG+AGG | - | chr4.4:80413633-80413652 | None:intergenic | 35.0% | |
| CTTAAATGAGTCTGCAATGA+AGG | + | chr4.4:80409806-80409825 | MS.gene80759:intron | 35.0% | |
| CTTCATTGCAGACTCATTTA+AGG | - | chr4.4:80409808-80409827 | None:intergenic | 35.0% | |
| CTTTACCGCCACAATTAAAT+TGG | - | chr4.4:80410957-80410976 | None:intergenic | 35.0% | |
| GAGAATATAAGGATGTACAG+AGG | - | chr4.4:80410213-80410232 | None:intergenic | 35.0% | |
| GAGATCACAGAAAAGTTTAG+GGG | + | chr4.4:80409348-80409367 | MS.gene80759:intron | 35.0% | |
| GATGGTTAATGAATATGCCA+AGG | + | chr4.4:80412433-80412452 | MS.gene80759:intron | 35.0% | |
| GGAAACCAATTTAATTGTGG+CGG | + | chr4.4:80410949-80410968 | MS.gene80759:CDS | 35.0% | |
| GTATCACAAAAGAGGAAAAC+AGG | - | chr4.4:80413625-80413644 | None:intergenic | 35.0% | |
| GTCACCTTTCAGACTAAAAA+GGG | - | chr4.4:80409312-80409331 | None:intergenic | 35.0% | |
| GTGAGATCACAGAAAAGTTT+AGG | + | chr4.4:80409346-80409365 | MS.gene80759:intron | 35.0% | |
| GTGTAAAGAGATTGGGAAAA+TGG | + | chr4.4:80408499-80408518 | MS.gene80759:CDS | 35.0% | |
| TAGAATGAATACCGAAACCT+GGG | + | chr4.4:80412813-80412832 | MS.gene80759:intron | 35.0% | |
| TCAAGCTCTTCATATTGCTT+TGG | + | chr4.4:80408623-80408642 | MS.gene80759:CDS | 35.0% | |
| TCACCATGTGTAAAGAGATT+GGG | + | chr4.4:80408492-80408511 | MS.gene80759:CDS | 35.0% | |
| TCATTGCAGACTCATTTAAG+GGG | - | chr4.4:80409806-80409825 | None:intergenic | 35.0% | |
| TCTCAGTGAAGAAGAAAAAG+AGG | + | chr4.4:80412103-80412122 | MS.gene80759:intron | 35.0% | |
| TCTGAAGACACTAATTCCTT+GGG | + | chr4.4:80412727-80412746 | MS.gene80759:CDS | 35.0% | |
| TCTGAATCGTAAAAATGACG+AGG | + | chr4.4:80409113-80409132 | MS.gene80759:intron | 35.0% | |
| TGTCACCTTTCAGACTAAAA+AGG | - | chr4.4:80409313-80409332 | None:intergenic | 35.0% | |
| TTAGAATGAATACCGAAACC+TGG | + | chr4.4:80412812-80412831 | MS.gene80759:intron | 35.0% | |
| TTGCAAATGACACAGTAAAG+GGG | - | chr4.4:80409285-80409304 | None:intergenic | 35.0% | |
| TTTATGAGAACTGAGATGCT+GGG | + | chr4.4:80411661-80411680 | MS.gene80759:intron | 35.0% | |
| TTTCCCAATCTCTTTACACA+TGG | - | chr4.4:80408498-80408517 | None:intergenic | 35.0% | |
| ! | AAACATTCTTGAGGCATTTG+CGG | - | chr4.4:80411801-80411820 | None:intergenic | 35.0% |
| ! | AATAACCCTTTTGCTTCCTT+TGG | - | chr4.4:80411851-80411870 | None:intergenic | 35.0% |
| ! | ACGAAATTTCGTTGACTAGT+TGG | + | chr4.4:80409152-80409171 | MS.gene80759:intron | 35.0% |
| ! | ACGTAGTTGGAAGATTTTGA+AGG | + | chr4.4:80411531-80411550 | MS.gene80759:intron | 35.0% |
| ! | ATATTGACATGATGGGAGTT+AGG | + | chr4.4:80413228-80413247 | MS.gene80759:intron | 35.0% |
| ! | ATTTTGAACGTCATCAACCA+CGG | + | chr4.4:80412498-80412517 | MS.gene80759:intron | 35.0% |
| ! | CGATATTACACTTGTTGGAT+GGG | + | chr4.4:80412201-80412220 | MS.gene80759:CDS | 35.0% |
| ! | CTCACATTGATTGAGAATCA+AGG | + | chr4.4:80413033-80413052 | MS.gene80759:intron | 35.0% |
| ! | CTCTTTTGTGATACAGTTAG+AGG | + | chr4.4:80413631-80413650 | MS.gene80759:intron | 35.0% |
| ! | CTTCTTCACTGAGACTTTTT+GGG | - | chr4.4:80412097-80412116 | None:intergenic | 35.0% |
| ! | GATATTACACTTGTTGGATG+GGG | + | chr4.4:80412202-80412221 | MS.gene80759:CDS | 35.0% |
| ! | GCTTATATGTTTTCATGGCA+GGG | + | chr4.4:80410750-80410769 | MS.gene80759:intron | 35.0% |
| ! | TCTTCTTCACTGAGACTTTT+TGG | - | chr4.4:80412098-80412117 | None:intergenic | 35.0% |
| ! | TGCTTATATGTTTTCATGGC+AGG | + | chr4.4:80410749-80410768 | MS.gene80759:intron | 35.0% |
| !! | CAGACCGATTTGGTAAAAAT+AGG | + | chr4.4:80410314-80410333 | MS.gene80759:CDS | 35.0% |
| !! | CATTTTTCCTGCTTTTGATC+AGG | + | chr4.4:80410809-80410828 | MS.gene80759:CDS | 35.0% |
| !! | GGCTTGCTTATATGTTTTCA+TGG | + | chr4.4:80410745-80410764 | MS.gene80759:intron | 35.0% |
| !! | TCTTCCTTGCTTTTCCAAAT+TGG | - | chr4.4:80413423-80413442 | None:intergenic | 35.0% |
| !!! | TTTTCAGTGGCTTTATCGTT+TGG | + | chr4.4:80412015-80412034 | MS.gene80759:intron | 35.0% |
| ACAAATGGAATGCGGCAATT+AGG | + | chr4.4:80409642-80409661 | MS.gene80759:intron | 40.0% | |
| ACAGATTTATAACGGCACCT+CGG | - | chr4.4:80413096-80413115 | None:intergenic | 40.0% | |
| ACCACTGAACTGACACATAA+TGG | - | chr4.4:80413526-80413545 | None:intergenic | 40.0% | |
| ACCATTATGTGTCAGTTCAG+TGG | + | chr4.4:80413522-80413541 | MS.gene80759:intron | 40.0% | |
| AGGGGATTATATTAGGGATG+TGG | + | chr4.4:80409446-80409465 | MS.gene80759:intron | 40.0% | |
| ATGTAAGTTAATACCGACCC+AGG | - | chr4.4:80412833-80412852 | None:intergenic | 40.0% | |
| ATTCTTGGTTGGCATGTACA+AGG | - | chr4.4:80413711-80413730 | None:intergenic | 40.0% | |
| ATTGGGAAAATGGGTGTCTT+TGG | + | chr4.4:80408509-80408528 | MS.gene80759:CDS | 40.0% | |
| CAAGTCACCTTATTCTTGGT+TGG | - | chr4.4:80413722-80413741 | None:intergenic | 40.0% | |
| CAGATTGCAGTAAGGTTTGT+CGG | - | chr4.4:80410687-80410706 | None:intergenic | 40.0% | |
| CAGCATACACAAAACCCAAA+CGG | + | chr4.4:80413118-80413137 | MS.gene80759:intron | 40.0% | |
| CATAGTCGTAAAGACAAGGA+GGG | - | chr4.4:80409007-80409026 | None:intergenic | 40.0% | |
| CATTGCAGACTCATTTAAGG+GGG | - | chr4.4:80409805-80409824 | None:intergenic | 40.0% | |
| CCATACAAAACCGCCTTATA+AGG | + | chr4.4:80409595-80409614 | MS.gene80759:intron | 40.0% | |
| CTCTCATAGTCGTAAAGACA+AGG | - | chr4.4:80409011-80409030 | None:intergenic | 40.0% | |
| GAAATGAATGAAACTCACCG+AGG | - | chr4.4:80408657-80408676 | None:intergenic | 40.0% | |
| GAAGTCCAAAGGAAGCAAAA+GGG | + | chr4.4:80411843-80411862 | MS.gene80759:CDS | 40.0% | |
| GACATTGAATTGCTACTCAC+AGG | + | chr4.4:80410587-80410606 | MS.gene80759:intron | 40.0% | |
| GATGACTTCGAATTAGCAAG+TGG | + | chr4.4:80411499-80411518 | MS.gene80759:intron | 40.0% | |
| GCTAAGTTTAGATATCGGAG+CGG | + | chr4.4:80410928-80410947 | MS.gene80759:CDS | 40.0% | |
| GGAAGCGATATTACACTTGT+TGG | + | chr4.4:80412196-80412215 | MS.gene80759:CDS | 40.0% | |
| GGGAGCTCAATTGTCTATTA+TGG | + | chr4.4:80412222-80412241 | MS.gene80759:CDS | 40.0% | |
| GGTTCGAAAACAAGAGGAAA+AGG | - | chr4.4:80413689-80413708 | None:intergenic | 40.0% | |
| GTACATGCCAACCAAGAATA+AGG | + | chr4.4:80413712-80413731 | MS.gene80759:CDS | 40.0% | |
| GTATTGAACCGACATCAATC+AGG | - | chr4.4:80409037-80409056 | None:intergenic | 40.0% | |
| GTCAACTTCCATTGTTCAGA+AGG | + | chr4.4:80408548-80408567 | MS.gene80759:CDS | 40.0% | |
| GTCACCATGTGTAAAGAGAT+TGG | + | chr4.4:80408491-80408510 | MS.gene80759:CDS | 40.0% | |
| GTGGTCTATGAATACGTAGT+TGG | + | chr4.4:80411518-80411537 | MS.gene80759:intron | 40.0% | |
| GTTATACTAGGTGAGTGCTA+AGG | + | chr4.4:80408874-80408893 | MS.gene80759:intron | 40.0% | |
| TACAAGGGTTCGAAAACAAG+AGG | - | chr4.4:80413695-80413714 | None:intergenic | 40.0% | |
| TCAGGCATGCTCTCTTTATA+AGG | + | chr4.4:80410827-80410846 | MS.gene80759:intron | 40.0% | |
| TCATAGTCGTAAAGACAAGG+AGG | - | chr4.4:80409008-80409027 | None:intergenic | 40.0% | |
| TCATATACCTGCTCACAAAG+AGG | - | chr4.4:80410352-80410371 | None:intergenic | 40.0% | |
| TCCAATACAAAGGTTGCAAC+CGG | + | chr4.4:80409884-80409903 | MS.gene80759:intron | 40.0% | |
| TCCACAGTTTCTTTATCCCA+AGG | - | chr4.4:80412746-80412765 | None:intergenic | 40.0% | |
| TCCTTGGGATAAAGAAACTG+TGG | + | chr4.4:80412742-80412761 | MS.gene80759:CDS | 40.0% | |
| TGCAAACTGGATTTCAGCTA+TGG | - | chr4.4:80410784-80410803 | None:intergenic | 40.0% | |
| TTATTACTCTGTACTCACGC+AGG | + | chr4.4:80412162-80412181 | MS.gene80759:intron | 40.0% | |
| TTCTTGGTTGGCATGTACAA+GGG | - | chr4.4:80413710-80413729 | None:intergenic | 40.0% | |
| TTGGGATAAAGAAACTGTGG+AGG | + | chr4.4:80412745-80412764 | MS.gene80759:CDS | 40.0% | |
| TTTGGAGAAGATGTAGGCTT+TGG | + | chr4.4:80410262-80410281 | MS.gene80759:CDS | 40.0% | |
| ! | AATGGGTGTCTTTGGTTTCA+AGG | + | chr4.4:80408517-80408536 | MS.gene80759:CDS | 40.0% |
| ! | ACAAAGGTGTGTTGAGACTT+TGG | - | chr4.4:80409520-80409539 | None:intergenic | 40.0% |
| ! | CATCGCAGTGCTTATGTTTT+TGG | + | chr4.4:80410244-80410263 | MS.gene80759:intron | 40.0% |
| ! | CTCATTTGTTAGAGTAGACG+TGG | - | chr4.4:80413353-80413372 | None:intergenic | 40.0% |
| ! | GACCTCTAGATTTCTAGACA+TGG | - | chr4.4:80412639-80412658 | None:intergenic | 40.0% |
| ! | GAGGCATCAGTAAAAAAGAC+AGG | + | chr4.4:80412764-80412783 | MS.gene80759:CDS | 40.0% |
| ! | GCGATATTACACTTGTTGGA+TGG | + | chr4.4:80412200-80412219 | MS.gene80759:CDS | 40.0% |
| ! | GGTCAACCCAAATTCTAAGA+TGG | - | chr4.4:80409728-80409747 | None:intergenic | 40.0% |
| ! | GTAGATTAGTCATGAAGCTC+CGG | + | chr4.4:80412872-80412891 | MS.gene80759:intron | 40.0% |
| ! | TTTGTATGGCTGGTTGAGTT+AGG | - | chr4.4:80409584-80409603 | None:intergenic | 40.0% |
| !! | ACCATATTTCTAGGCGTAGA+GGG | + | chr4.4:80409769-80409788 | MS.gene80759:intron | 40.0% |
| !! | CCTTATAAGGCGGTTTTGTA+TGG | - | chr4.4:80409598-80409617 | None:intergenic | 40.0% |
| !! | TGTGCCCTTTTTAGTCTGAA+AGG | + | chr4.4:80409305-80409324 | MS.gene80759:intron | 40.0% |
| !!! | TTTTAAGTACTGGTCCACAG+TGG | - | chr4.4:80408941-80408960 | None:intergenic | 40.0% |
| AATGGAATGCGGCAATTAGG+TGG | + | chr4.4:80409645-80409664 | MS.gene80759:intron | 45.0% | |
| ACACAAAACCCAAACGGTTC+TGG | + | chr4.4:80413124-80413143 | MS.gene80759:intron | 45.0% | |
| ACATGACAGAAGAAAGCCTC+AGG | - | chr4.4:80411135-80411154 | None:intergenic | 45.0% | |
| ACCACAAACTCTTGCTACAG+GGG | - | chr4.4:80413657-80413676 | None:intergenic | 45.0% | |
| ACCCATATGCCGCAATTAGA+CGG | + | chr4.4:80409831-80409850 | MS.gene80759:intron | 45.0% | |
| AGACCACAAACTCTTGCTAC+AGG | - | chr4.4:80413659-80413678 | None:intergenic | 45.0% | |
| AGCAGCATCCTTCTGAACAA+TGG | - | chr4.4:80408559-80408578 | None:intergenic | 45.0% | |
| AGGAATATCAGGGCTCTGTT+TGG | + | chr4.4:80411365-80411384 | MS.gene80759:intron | 45.0% | |
| ATACTAGGTGAGTGCTAAGG+TGG | + | chr4.4:80408877-80408896 | MS.gene80759:intron | 45.0% | |
| ATCCTCCGGTACTTCTTCAA+CGG | - | chr4.4:80412041-80412060 | None:intergenic | 45.0% | |
| ATGAATACCGAAACCTGGGT+CGG | + | chr4.4:80412817-80412836 | MS.gene80759:intron | 45.0% | |
| ATTAGGAGTGGTAGAGAGCA+AGG | + | chr4.4:80411694-80411713 | MS.gene80759:intron | 45.0% | |
| CAATACTCCTCTTTGTGAGC+AGG | + | chr4.4:80410342-80410361 | MS.gene80759:CDS | 45.0% | |
| CGAAGTCCAAAGGAAGCAAA+AGG | + | chr4.4:80411842-80411861 | MS.gene80759:CDS | 45.0% | |
| CTGCTAATCCAGTTGTGCAA+CGG | - | chr4.4:80410297-80410316 | None:intergenic | 45.0% | |
| GACCACAAACTCTTGCTACA+GGG | - | chr4.4:80413658-80413677 | None:intergenic | 45.0% | |
| GAGAGTGACCTGATTGATGT+CGG | + | chr4.4:80409026-80409045 | MS.gene80759:intron | 45.0% | |
| GATTTCAGCACCAAATCCTC+CGG | - | chr4.4:80412901-80412920 | None:intergenic | 45.0% | |
| GCACACGACCCATAAAGATA+CGG | + | chr4.4:80413303-80413322 | MS.gene80759:intron | 45.0% | |
| GCACTGCGATGAAATGCAAA+AGG | - | chr4.4:80410235-80410254 | None:intergenic | 45.0% | |
| GCAGTCTTCACCTTATAAGG+CGG | - | chr4.4:80409608-80409627 | None:intergenic | 45.0% | |
| GCTTTCTTCTGTCATGTTCC+TGG | + | chr4.4:80411138-80411157 | MS.gene80759:CDS | 45.0% | |
| GGCAACATGTAATCATCCTC+CGG | - | chr4.4:80412055-80412074 | None:intergenic | 45.0% | |
| GGTAACGAGAGAATTAGGAG+TGG | + | chr4.4:80411682-80411701 | MS.gene80759:intron | 45.0% | |
| GGTACCTCAGCTTCAGATAA+AGG | - | chr4.4:80412076-80412095 | None:intergenic | 45.0% | |
| GTTAATACCGACCCAGGTTT+CGG | - | chr4.4:80412827-80412846 | None:intergenic | 45.0% | |
| TCCCTCTACGCCTAGAAATA+TGG | - | chr4.4:80409773-80409792 | None:intergenic | 45.0% | |
| TCCGGTTGCAACCTTTGTAT+TGG | - | chr4.4:80409888-80409907 | None:intergenic | 45.0% | |
| TCTTGAACGCTGCTTCTCAA+GGG | + | chr4.4:80412932-80412951 | MS.gene80759:CDS | 45.0% | |
| TGAGAAGCAGCGTTCAAGAA+TGG | - | chr4.4:80412931-80412950 | None:intergenic | 45.0% | |
| TGCTGGGTAACGAGAGAATT+AGG | + | chr4.4:80411677-80411696 | MS.gene80759:intron | 45.0% | |
| TGGGCAGTCTTCACCTTATA+AGG | - | chr4.4:80409611-80409630 | None:intergenic | 45.0% | |
| TTACCACTCTCAATCTCCTG+AGG | + | chr4.4:80411116-80411135 | MS.gene80759:CDS | 45.0% | |
| TTCTTGAACGCTGCTTCTCA+AGG | + | chr4.4:80412931-80412950 | MS.gene80759:CDS | 45.0% | |
| TTGCTTCCTTTGGACTTCGA+GGG | - | chr4.4:80411841-80411860 | None:intergenic | 45.0% | |
| TTGGTGTACCAGAACCGTTT+GGG | - | chr4.4:80413135-80413154 | None:intergenic | 45.0% | |
| TTTGCTTCCTTTGGACTTCG+AGG | - | chr4.4:80411842-80411861 | None:intergenic | 45.0% | |
| ! | CTTTTCTGTGATCTCACGGT+TGG | - | chr4.4:80409343-80409362 | None:intergenic | 45.0% |
| ! | GGTGTCTTTGGTTTCAAGGA+GGG | + | chr4.4:80408521-80408540 | MS.gene80759:CDS | 45.0% |
| ! | GTGTCTTTGGTTTCAAGGAG+GGG | + | chr4.4:80408522-80408541 | MS.gene80759:CDS | 45.0% |
| ! | GTTGCCTTTATCTGAAGCTG+AGG | + | chr4.4:80412069-80412088 | MS.gene80759:CDS | 45.0% |
| ! | TTGCTTTGGACACTGATCCT+CGG | + | chr4.4:80408637-80408656 | MS.gene80759:CDS | 45.0% |
| ! | TTTGGCCGTTGAAGAAGTAC+CGG | + | chr4.4:80412033-80412052 | MS.gene80759:CDS | 45.0% |
| ! | TTTGGTGTACCAGAACCGTT+TGG | - | chr4.4:80413136-80413155 | None:intergenic | 45.0% |
| !! | ACTGGATTAGCAGACCGATT+TGG | + | chr4.4:80410304-80410323 | MS.gene80759:CDS | 45.0% |
| !! | ATAAGGCGGTTTTGTATGGC+TGG | - | chr4.4:80409594-80409613 | None:intergenic | 45.0% |
| !! | GACCATATTTCTAGGCGTAG+AGG | + | chr4.4:80409768-80409787 | MS.gene80759:intron | 45.0% |
| !! | GGTATCGTTGGCTTTGGAAT+TGG | + | chr4.4:80410609-80410628 | MS.gene80759:CDS | 45.0% |
| AAGCCTCAGGAGATTGAGAG+TGG | - | chr4.4:80411122-80411141 | None:intergenic | 50.0% | |
| AAGGATGCTGCTGCTGAGAA+TGG | + | chr4.4:80408567-80408586 | MS.gene80759:CDS | 50.0% | |
| AATGCGGCAATTAGGTGGCT+AGG | + | chr4.4:80409650-80409669 | MS.gene80759:intron | 50.0% | |
| AGAACCCCTTATGGAGCTGT+TGG | + | chr4.4:80411081-80411100 | MS.gene80759:CDS | 50.0% | |
| AGCCGTCTAATTGCGGCATA+TGG | - | chr4.4:80409836-80409855 | None:intergenic | 50.0% | |
| AGGTGGACCACCTTTGTAAG+TGG | + | chr4.4:80408894-80408913 | MS.gene80759:intron | 50.0% | |
| ATGCGGCAATTAGGTGGCTA+GGG | + | chr4.4:80409651-80409670 | MS.gene80759:intron | 50.0% | |
| ATGGCCAACAGCTCCATAAG+GGG | - | chr4.4:80411088-80411107 | None:intergenic | 50.0% | |
| ATTTATAACGGCACCTCGGC+AGG | - | chr4.4:80413092-80413111 | None:intergenic | 50.0% | |
| CAGTGGACCACTTACATCCA+CGG | - | chr4.4:80408924-80408943 | None:intergenic | 50.0% | |
| CATGGCCAACAGCTCCATAA+GGG | - | chr4.4:80411089-80411108 | None:intergenic | 50.0% | |
| CCTTCAAAAGTGGTCTTCCG+TGG | - | chr4.4:80409205-80409224 | None:intergenic | 50.0% | |
| CTAGCGGCGCACTGTAATTA+AGG | + | chr4.4:80409854-80409873 | MS.gene80759:intron | 50.0% | |
| GAGCATGCCTGATCAAAAGC+AGG | - | chr4.4:80410819-80410838 | None:intergenic | 50.0% | |
| GCCGTCTAATTGCGGCATAT+GGG | - | chr4.4:80409835-80409854 | None:intergenic | 50.0% | |
| GCTATCTCGTCGCGACATTA+AGG | + | chr4.4:80408708-80408727 | MS.gene80759:intron | 50.0% | |
| TGCAGACTCATTTAAGGGGG+AGG | - | chr4.4:80409802-80409821 | None:intergenic | 50.0% | |
| TGGATGTAAGTGGTCCACTG+TGG | + | chr4.4:80408924-80408943 | MS.gene80759:intron | 50.0% | |
| TGTCATCCCTCGAAGTCCAA+AGG | + | chr4.4:80411832-80411851 | MS.gene80759:CDS | 50.0% | |
| ! | CGTCATCAACCACGGTTTTC+AGG | + | chr4.4:80412506-80412525 | MS.gene80759:intron | 50.0% |
| ! | GAGAGTGGTAATGTCCACCA+TGG | - | chr4.4:80411107-80411126 | None:intergenic | 50.0% |
| ! | GGAGAAGATGTAGGCTTTGG+TGG | + | chr4.4:80410265-80410284 | MS.gene80759:CDS | 50.0% |
| ! | GGGTGTCTTTGGTTTCAAGG+AGG | + | chr4.4:80408520-80408539 | MS.gene80759:CDS | 50.0% |
| ! | TGGAATTGGTCTGGCAGCTA+TGG | + | chr4.4:80410623-80410642 | MS.gene80759:CDS | 50.0% |
| !! | CCACGGAAGACCACTTTTGA+AGG | + | chr4.4:80409202-80409221 | MS.gene80759:intron | 50.0% |
| !! | CGTTGGCTTTGGAATTGGTC+TGG | + | chr4.4:80410614-80410633 | MS.gene80759:CDS | 50.0% |
| !! | TCACAGGGTATCGTTGGCTT+TGG | + | chr4.4:80410603-80410622 | MS.gene80759:intron | 50.0% |
| !! | TGCTACTCACAGGGTATCGT+TGG | + | chr4.4:80410597-80410616 | MS.gene80759:intron | 50.0% |
| AGTCATGAAGCTCCGGTGAC+CGG | + | chr4.4:80412879-80412898 | MS.gene80759:CDS | 55.0% | |
| CCACGGTGGACCACTTACAA+AGG | - | chr4.4:80408907-80408926 | None:intergenic | 55.0% | |
| CCATGGCCAACAGCTCCATA+AGG | - | chr4.4:80411090-80411109 | None:intergenic | 55.0% | |
| CCTTATGGAGCTGTTGGCCA+TGG | + | chr4.4:80411087-80411106 | MS.gene80759:CDS | 55.0% | |
| CCTTTGTAAGTGGTCCACCG+TGG | + | chr4.4:80408904-80408923 | MS.gene80759:intron | 55.0% | |
| CGGTGGACCACTTACAAAGG+TGG | - | chr4.4:80408904-80408923 | None:intergenic | 55.0% | |
| CTCACGCAGGTGATTCGAGA+AGG | + | chr4.4:80412175-80412194 | MS.gene80759:intron | 55.0% | |
| GCCCCTGTAGCAAGAGTTTG+TGG | + | chr4.4:80413653-80413672 | MS.gene80759:CDS | 55.0% | |
| GCGGCGCACTGTAATTAAGG+TGG | + | chr4.4:80409857-80409876 | MS.gene80759:intron | 55.0% | |
| GGTGTGTTCCGTTGCACAAC+TGG | + | chr4.4:80410286-80410305 | MS.gene80759:CDS | 55.0% | |
| TATGGAGCTGTTGGCCATGG+TGG | + | chr4.4:80411090-80411109 | MS.gene80759:CDS | 55.0% | |
| TGCCGCAATTAGACGGCTAG+CGG | + | chr4.4:80409838-80409857 | MS.gene80759:intron | 55.0% | |
| TGCGGCAATTAGGTGGCTAG+GGG | + | chr4.4:80409652-80409671 | MS.gene80759:intron | 55.0% | |
| TGGACCACTTACATCCACGG+TGG | - | chr4.4:80408921-80408940 | None:intergenic | 55.0% | |
| TGGTCCACCGTGGATGTAAG+TGG | + | chr4.4:80408914-80408933 | MS.gene80759:intron | 55.0% | |
| CGCCGCTAGCCGTCTAATTG+CGG | - | chr4.4:80409843-80409862 | None:intergenic | 60.0% | |
| GCACCAAATCCTCCGGTCAC+CGG | - | chr4.4:80412894-80412913 | None:intergenic | 60.0% | |
| GGCAATTAGGTGGCTAGGGG+CGG | + | chr4.4:80409655-80409674 | MS.gene80759:intron | 60.0% | |
| TCACTGTCCTCAACCTGCCG+AGG | + | chr4.4:80413076-80413095 | MS.gene80759:intron | 60.0% | |
| !! | GGCCGTTGAAGAAGTACCGG+AGG | + | chr4.4:80412036-80412055 | MS.gene80759:CDS | 60.0% |
| AACGGCACCTCGGCAGGTTG+AGG | - | chr4.4:80413086-80413105 | None:intergenic | 65.0% | |
| CATGAAGCTCCGGTGACCGG+AGG | + | chr4.4:80412882-80412901 | MS.gene80759:CDS | 65.0% | |
| GCTCCGGTGACCGGAGGATT+TGG | + | chr4.4:80412888-80412907 | MS.gene80759:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 80408489 | 80413864 | 80408489 | ID=MS.gene80759 |
| chr4.4 | mRNA | 80408489 | 80413864 | 80408489 | ID=MS.gene80759.t1;Parent=MS.gene80759 |
| chr4.4 | exon | 80408489 | 80408658 | 80408489 | ID=MS.gene80759.t1.exon1;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80408489 | 80408658 | 80408489 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80410252 | 80410363 | 80410252 | ID=MS.gene80759.t1.exon2;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80410252 | 80410363 | 80410252 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80410609 | 80410644 | 80410609 | ID=MS.gene80759.t1.exon3;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80410609 | 80410644 | 80410609 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80410771 | 80410830 | 80410771 | ID=MS.gene80759.t1.exon4;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80410771 | 80410830 | 80410771 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80410913 | 80410970 | 80410913 | ID=MS.gene80759.t1.exon5;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80410913 | 80410970 | 80410913 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80411070 | 80411167 | 80411070 | ID=MS.gene80759.t1.exon6;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80411070 | 80411167 | 80411070 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80411830 | 80411919 | 80411830 | ID=MS.gene80759.t1.exon7;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80411830 | 80411919 | 80411830 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80412022 | 80412090 | 80412022 | ID=MS.gene80759.t1.exon8;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80412022 | 80412090 | 80412022 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80412184 | 80412270 | 80412184 | ID=MS.gene80759.t1.exon9;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80412184 | 80412270 | 80412184 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80412701 | 80412796 | 80412701 | ID=MS.gene80759.t1.exon10;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80412701 | 80412796 | 80412701 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80412876 | 80412953 | 80412876 | ID=MS.gene80759.t1.exon11;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80412876 | 80412953 | 80412876 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80413647 | 80413733 | 80413647 | ID=MS.gene80759.t1.exon12;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80413647 | 80413733 | 80413647 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| chr4.4 | exon | 80413829 | 80413864 | 80413829 | ID=MS.gene80759.t1.exon13;Parent=MS.gene80759.t1 |
| chr4.4 | CDS | 80413829 | 80413864 | 80413829 | ID=cds.MS.gene80759.t1;Parent=MS.gene80759.t1 |
| Gene Sequence |
| Protein sequence |
