AlfalfaGEDB | MS.gene072037

M. sativa cultivar XinJiangDaYe / MS.gene072037

KEGG: K00658
GO: GO:0003674 GO:0003824 GO:0004149 GO:0005575 GO:0006099 GO:0008150 GO:0008152 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0016748 GO:0016751 GO:0032991 GO:0044238 GO:0045239 GO:0045240 GO:0045252 GO:0140096 GO:1902494 GO:1990204 GO:1990234
PFAM: PF00198.26 PF00364.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072037.t1	XP_003593015.1	99.1	422	4	0	2	423	32	453	1.00E-204	722.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072037.t1	Q8H107	75.2	391	91	2	37	423	76	464	2.2e-142	506.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072037.t1	G7IPF6	99.1	422	4	0	2	423	32	453	7.5e-205	722.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05212	MS.gene072037	0.803565	3.28E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000251	MS.gene072037	PPI
MS.gene002068	MS.gene072037	PPI
MS.gene00641	MS.gene072037	PPI
MS.gene006731	MS.gene072037	PPI
MS.gene012996	MS.gene072037	PPI
MS.gene022537	MS.gene072037	PPI
MS.gene029815	MS.gene072037	PPI
MS.gene035364	MS.gene072037	PPI
MS.gene035365	MS.gene072037	PPI
MS.gene041600	MS.gene072037	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072037.t1	MTR_2g006820	99.526	422	2	0	2	423	32	453	0.0	858
MS.gene072037.t1	MTR_5g093300	97.156	422	11	1	2	423	35	455	0.0	838
MS.gene072037.t1	MTR_8g018770	27.542	472	277	10	13	421	74	543	1.48e-39	149
MS.gene072037.t1	MTR_1g091037	29.091	385	241	8	63	421	247	625	5.80e-32	128
MS.gene072037.t1	MTR_1g091037	29.091	385	241	8	63	421	255	633	6.37e-32	128
MS.gene072037.t1	MTR_4g120220	24.777	448	259	13	51	423	75	519	2.96e-24	105
MS.gene072037.t1	MTR_1g111140	33.158	190	120	4	237	421	283	470	2.12e-20	93.6
MS.gene072037.t1	MTR_5g092530	95.000	40	2	0	321	360	4	43	1.33e-18	79.7
MS.gene072037.t1	MTR_1g096240	32.484	157	100	3	267	419	301	455	2.65e-18	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072037.t1	AT4G26910	72.959	392	98	2	37	423	76	464	0.0	584
MS.gene072037.t1	AT4G26910	72.959	392	98	2	37	423	75	463	0.0	584
MS.gene072037.t1	AT5G55070	76.471	391	91	1	34	423	74	464	0.0	580
MS.gene072037.t1	AT5G55070	76.471	391	91	1	34	423	74	464	0.0	580
MS.gene072037.t1	AT4G26910	74.728	368	85	2	61	423	1	365	0.0	556
MS.gene072037.t1	AT1G54220	29.310	464	259	13	24	421	79	539	1.30e-40	152
MS.gene072037.t1	AT1G54220	29.310	464	259	13	24	421	79	539	1.30e-40	152
MS.gene072037.t1	AT3G13930	28.893	488	272	14	4	421	57	539	8.04e-38	144
MS.gene072037.t1	AT3G52200	37.069	232	133	5	198	421	411	637	9.64e-34	134
MS.gene072037.t1	AT3G52200	37.069	232	133	5	198	421	487	713	3.48e-33	132

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Find 114 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAACCACTAACCTTAT+AGG	0.311042	2.4:-75987256	None:intergenic
AACTTTATCAATTGATGAGA+TGG	0.518997	2.4:+75991739	MS.gene072037:CDS
AAGAGGCCTCCATTCAAACA+TGG	0.650484	2.4:+75988223	MS.gene072037:CDS
AAGCATCCTTATAATCAGCA+CGG	0.676021	2.4:-75991159	None:intergenic
AAGCCTGCGAGGGTCCTCCA+CGG	0.657162	2.4:-75992392	None:intergenic
AATCTTGTTACCTGGTGCGA+CGG	0.611238	2.4:-75989611	None:intergenic
AATTTCTGTCATATAACACC+TGG	0.627152	2.4:+75987106	MS.gene072037:CDS
ACAAGATTGCAATCATTTCA+AGG	0.487407	2.4:+75989626	MS.gene072037:CDS
ACATTTCCTCCAACAACCGC+TGG	0.572771	2.4:-75992274	None:intergenic
ACCTGAGGTGGGTTGATAAT+AGG	0.238106	2.4:-75991818	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAAATCAATGGCTGA+TGG	-	chr2.4:75990950-75990969	None:intergenic	30.0%
AAAATCCCTAAATGCATAAC+AGG	-	chr2.4:75990115-75990134	None:intergenic	30.0%
AACTATAAGGGCAGAATATT+TGG	-	chr2.4:75992093-75992112	None:intergenic	30.0%
AAGTATTCTGTTATTCTGTG+GGG	+	chr2.4:75990741-75990760	MS.gene072037:intron	30.0%
AATTTCTGTCATATAACACC+TGG	+	chr2.4:75987106-75987125	MS.gene072037:CDS	30.0%
ACAAGATTGCAATCATTTCA+AGG	+	chr2.4:75989626-75989645	MS.gene072037:CDS	30.0%
ACTCTTACAATATCAAATGG+TGG	+	chr2.4:75991770-75991789	MS.gene072037:CDS	30.0%
AGAAAACTACTTGCAAATCA+TGG	-	chr2.4:75988428-75988447	None:intergenic	30.0%
AGATTAACATGATAGACAAG+GGG	+	chr2.4:75991007-75991026	MS.gene072037:intron	30.0%
AGGGGAAGAAAATGAAAAAA+TGG	+	chr2.4:75987591-75987610	MS.gene072037:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	75986800	75992429	75986800	ID=MS.gene072037
chr2.4	mRNA	75986800	75992429	75986800	ID=MS.gene072037.t1;Parent=MS.gene072037
chr2.4	exon	75986800	75986802	75986800	ID=MS.gene072037.t1.exon1;Parent=MS.gene072037.t1
chr2.4	CDS	75986800	75986802	75986800	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75987070	75987127	75987070	ID=MS.gene072037.t1.exon2;Parent=MS.gene072037.t1
chr2.4	CDS	75987070	75987127	75987070	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75987236	75987263	75987236	ID=MS.gene072037.t1.exon3;Parent=MS.gene072037.t1
chr2.4	CDS	75987236	75987263	75987236	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75988209	75988270	75988209	ID=MS.gene072037.t1.exon4;Parent=MS.gene072037.t1
chr2.4	CDS	75988209	75988270	75988209	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75989074	75989148	75989074	ID=MS.gene072037.t1.exon5;Parent=MS.gene072037.t1
chr2.4	CDS	75989074	75989148	75989074	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75989253	75989308	75989253	ID=MS.gene072037.t1.exon6;Parent=MS.gene072037.t1
chr2.4	CDS	75989253	75989308	75989253	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75989427	75989471	75989427	ID=MS.gene072037.t1.exon7;Parent=MS.gene072037.t1
chr2.4	CDS	75989427	75989471	75989427	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75989589	75989849	75989589	ID=MS.gene072037.t1.exon8;Parent=MS.gene072037.t1
chr2.4	CDS	75989589	75989849	75989589	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75989936	75990030	75989936	ID=MS.gene072037.t1.exon9;Parent=MS.gene072037.t1
chr2.4	CDS	75989936	75990030	75989936	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75991141	75991231	75991141	ID=MS.gene072037.t1.exon10;Parent=MS.gene072037.t1
chr2.4	CDS	75991141	75991231	75991141	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75991318	75991428	75991318	ID=MS.gene072037.t1.exon11;Parent=MS.gene072037.t1
chr2.4	CDS	75991318	75991428	75991318	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75991644	75991838	75991644	ID=MS.gene072037.t1.exon12;Parent=MS.gene072037.t1
chr2.4	CDS	75991644	75991838	75991644	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1
chr2.4	exon	75992238	75992429	75992238	ID=MS.gene072037.t1.exon13;Parent=MS.gene072037.t1
chr2.4	CDS	75992238	75992429	75992238	ID=cds.MS.gene072037.t1;Parent=MS.gene072037.t1

Gene Sequence

>MS.gene072037

ATGGTTAGCATTGGTTTTTGATAGAACACTATGGTATCGTTTGGTTCATGTAGCCGACTCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGCATTGGAATGGTTAGCATACCTGCTAATCTGTTTTATCTCTGGTTTTTACCTCTATTGAGTATATGTCCTCATATTTTCATTGGCACAGAGTACTTCCTTTGTTTTACAGATTTAGGATTTACTTATTGGTCATTTCCTTGGTGGGTTCTTTACAACTTTTTTCTATTATTTTTAACAGATTGCATTAAGCTCAGGAGGATGTGGGAATATCCGGAATTTCTGTCATATAACACCTGGTAATTGTGTTTTTTTTTAAAAAAAAAAAAACAAAATTCGTTAGCTGGTACAAATTAAATGGTTTATGCAATTGTGCAATTCATATGACCAGCCTTTTTCTATTGCAGGACGCTGGATTAGTTCAAAGCCTATAAGGTTAGTGGTTCCTTTATTAGTCATAGGCTTTATGTTTTGCTTTATGATATTTAATTTATAAACATGTTGGCTTGTAACTAGCAAAATGAGTCAGTATTTAATTTATAAACATGTTTAATTTATAAACATGTTTTGCTTTATAGTAATATTTAAGTTGGCGGAAGCCGGGACAAATAAGATTTAAGCACTCCAATAAGCTTTGAATGTTAAAATCACATTTGGACTTTGGAGACTTCAATAACATGCATATATGGTTTAAATAAATTTCTAGAATAAAAATAAAATCATTTGCGAATATTTCCCGTTTCCTAACCTAACAGGCTATTCAGGGGAAGAAAATGAAAAAATGGTAATAAAAATTAATTGTTAGAAAATGAAATAATGGAATTGTTCTCTAAAACTGAGCAAACTCTTAATTTTTCACTATTATAGATCACGTGTTTGCAATTTTTCTTTGCCTTCTATGTTTTTTGCTGTCAGTTCTACACTTCTTCTTGTATGTTGTTAGTTTCTTCTTGTGCACATAAGCATCATATTATGCATTCAAATTAGTTGATAGAAAAGCTTTTAAATTTAGTGGTTTTACAGTGTTAGTAAGGGCATTGGTGTTGCAGACAAACAAATTAGCTGACATTTTCTTTGGAAGGAAAAATTCAAAAAACGTATTTTCTGTAATATACTTTCATTTATGCTCAAACAAATTTTGTTGGTAACTTCTCACATATAATTTGGGGAGCAACAGCAATAGGTCAACTTTGCTACTTCAACCTGCCTCTGCGCTTTTGTGTGTGTCTGTTAACGTAATAATTTGAAAATATATGGTTACGAATTTTTCCTTACTCTGTGATTGCCACCAATTAATTAGTTGGTGAACAGAATGGAAAGAGTACTTACTGTTTCTTATTGTCAGTGGTGTACTGCTCTGATAACCTTATTGCTATGCAGGGACATTTTTCATCAAGAGGCCTCCATTCAAACATGGAAGCGTTCCTTTTCTTCGGATAATGGTGAGATATTAACGAGACTGTCAGTTTTCTGTCATTCAAGTTACCTATATAGTTCAAGATTATTTTGTGTTTAGGGCTGTCCAAAAGAACTGGAAAACCAAACCGAACCACGCTTAACTAAACCAAACCATTTCTTTCGGTTCAAGAACCAAAACCATGATTTGCAAGTAGTTTTCTACCCAAACCAAACATTAGATAACCAAACCTGAACTGAAACAACCGAACTGTACAAACACATTTTAATTTCAATTACACAAGTTCATTTTCTGGTGTTATGGTTATTGTAAGAATTTTAACTTTTATTAAAGAGGAATATTTCACAATATCCATGGTTATGATGATAGAGTATTGCATAAGCGTATTTCTGAAATTTAACTACTGTATAACTGATTTAATGTAATAGAATTCAGAATGAATTGTTTGCTAGAAAAGATAGTGTATTTCTATCCAGCGTGGTATAGAAGAATGACAATCCTTGGGAGTTGGGTAATTGATCTGATCAATGAATTTTTAGAATTATTGACAATTTGCTTAGCTACATATTTACATTTGTGAAGTTATGCTCTATTTTTTTGTGCATTTTGTCGTTTTTCTTAATGTTCTAAATTGCAGTTTCATTTTATTAGCAAGAGTTTAGAGTCTTGGCCATTGGACCGAATTATCCTGTGATTGCTAATATTTGTTTAGTATAACTTTTTTCTGGCATTTATGCTGTTCAATGTACAGTGTTCTTTCTTGTGAGTTTTCCTGTTCTTTCTTTTGATTGCTGATCTTTTTTGAATATTATTTTATTTGTGATAAAGGAGACAATGTTGATGTTGTTGTCCCTCCATTGGCTGAATCCATCGAGGATGGGACTCTAGCAAAATTTCTGAAGAGTATGTTAACACAACTCTATATACATTTTATTTACAGTTACTTGTTATTTTTAGTGGTTATTGTGATTGACTTTTATATTTTTTGTTTTGATGTATGGGAGCAGGGCCTGGTGACAGGGTTAATGTTGATGAACCAATTGCTCAAATTGAAACAGATAAGGTGTTATATTGAAATAACATGCAATTGTTTCTATGAAGGATTTGGATAGTTATAAGTGAGTCCAGTTTTCTTTGTTCCTAAATTATCATTAACACTGTTTTCCTTACTGCTGTATCAGGTCACTATTGATGTTCCAAGTCCTGAGTCGGGTGTGATTCTGAAGGTACTGTTTAATATGTTCAGAACATTTTTACCCCCACAAGCCATCCCATGAATACTAAAATTATTGCTCTCTTATTTAATTAAATTTTGTTCATACGATATATTTAATGTTGTGCAGCTTCTAGCCAATGAAGGGGATACCGTCGCACCAGGTAACAAGATTGCAATCATTTCAAGGTCTGCTGATGCTACAACCCACGTTGCGCCATCTGAGAATGCACCTGAGAAACCTGCTCCTAAGCCAACCCCAAAGGCTAGTGAGCCAGAGGAGAAGAAAACTCCTAAAGTTGAAACTACTACAACTGAGAAGCCTAAAGCACCTACTCCACAAAGCTCTCCAACTGAGCCACAGCTTCCTCCTAAGGAAAGAGAAAGACGAGTGAGTCATTGTGATTTTTTATTGTTATCGCTTCCTGAATTATGTTTACCAATTTTTTTATTTTAATGTCTGCCTTCATTTTCAAGGTTCCTATGACAAGGCTTCGGAAACGGGTTGCTCAACGGTTGAAGGATTCCCAAAACACATTTGCTATGTTGACAACCTTCAATGAAGTTGATATGTAAGTTCCATTGATTGTCTAATTAAAGTAGAAGCTTTGAATATTGCCTCAAGATTTAGGGATTTTCGTGTGTACATATTTCCTGTTATGCATTTAGGGATTTTCGTGTGTACATATTTCCTGTTATGCATTGTTTGGTGATGCTTACTTTGAATTAGAATATAGGAAACTGTGGGAATATTCCTTGTGGTACATACTACATAGTATTCTAAATTTAACAGTTCTAAACCCATATGGTGTGTTTGCTAAACCAATGGTGCATTACTATCGTCTGGAATCCGTCTATTTTCTTGGTATTTACGGTACATCAGCAGAATCTGTTACATGTTCTCCCGAATCCTACATGTCATAGTAGGTGTGTGTTCCTTATTTTTTGTTGTTCAGAAAAAGTGGGGATGGCATCTGCATACATATATGCATTTGGGATGAAACTTTATCTTTACAGATTATTTTACTCAATTTTTTAGCTGCTTTTTTACATTATGCCGCTGTGCATGTTTCTATGCCATAACCAGTATCATAGGACATGCCATTGATTGGAATGTTAATGTGGAAATGGGCTTTGACTATGGGCCCAAACCTAAGATATGGAGAGTCTACACTAGGAAAAGAGGAAATGGGAAGGAATGATGAGGTGTCAATTTTGGTGCATGGGATGCATGAGTTTTAGTAACTATATAAGTAATAGTAAGTCAAAGAATAAGGCAGCTAAGTATTCTGTTATTCTGTGGGGTCACTTTGTTAGTTATTTGGGAGCAATGCGTGCTATGAGAGATTGATAGTATCTCACTATCAGTATGTTACTCTTTTGTCCTTATTTCTCTTGTAATTGTTCATCACCATTGATACAATTACAAGCTTTCACCATTTTTCCATTAATATTGTTACTGTTTTATTCACATTTTCATATACATCTCCATCAGCCATTGATTTTGTTTTTTTGTCGGGGTGAGGGAGAGAGAAAACCCAGTTATGTAGATTAACATGATAGACAAGGGGTGACTCCATTTGTTTATTATTATTTATTTATTGGTGCTATACTTGTTGTAATGGCCTTGTATTGAATTGCAATTATCATTCTCTCCCTGATTGCTCTGCAATTTATAATAGGACTAATTTGATGAAGCTCCGTGCTGATTATAAGGATGCTTTCGTTGAAAAGCATGGAGTTAAATTGGGACTTATGTCTGGGTTTATCAAAGTATGCTCTCAAACTATGGACGTATAGATTAAATGATCTATTTCTCTATATTTTTTTCTATGTACTTACTTTGGTCTCTTTGGTAGGCTGCTGTCAATGCACTTCAATATCAACCGATTGTGAATGCAGTCATTGATGGGGATGATATTATATACAGAGATTATATTGATATCAGCATAGCTGTTGGAACTCCGAAGGTTTTCATCAGTCACTTCAACCTTCACTTATTTACTATGTTTTTATTATCTAGAGAAAATCCTTGGTGTTGGGTTTATTATACTAATGATGAAAGCTAACCATATGTCATTGATCTACGTCGATTGACATTGTCATGACTAGTTTGAAATTTTTTAATGGTTGGATTGAAAGAGCTAATCAAGTATAACTTTGCTTTTTTTGCTTGCCTTACCAGGGACTTGTTGTGCCTGTTATCCGTGATGCTGATAAAATGAACTTTGCGGATATAGAAAAACAGATCAATGTTTTTGCAAAGAAGGCTAACGCTGGAACTTTATCAATTGATGAGATGGCTGGAGGCACTCTTACAATATCAAATGGTGGTGTTTATGGCAGCCTTTTGAGTACCCCTATTATCAACCCACCTCAGGTTTGTATGTTCTGCTAAGAAGGCACTTATTATGGTTTTTTATTGTATAGAACATTCTTTGATTTATGGTAAGATTTAATTATTGGCTGCTCTCATCAAAAGAGCCCCATGAAATATGTTCGATGACAGGAAGTAGGAACTAACCCATTTCATGCATTGTGTCGTATCATGTGACCAGATGCATGCCACTAGTAACTTATCAAAATGAATTTTGTTTTCACATTACAATCAGTAAAATTCTAAATGCCTAACCAAATATTCTGCCCTTATAGTTGCCAGTAGTAAGATTTGGATAATTGTATTGCTTTTCTTTTCTTTTTAAATGATGCCAAATAATTGTTGGGAAATTCTACACAATTTTTTTTTAAAGGAATCTCATGCAACTATTATTTTTTGCAGTCGGCAATCTTGGGTATGCATTCGATTGTGAGCCGTCCAGCGGTTGTTGGAGGAAATGTTGTTCCAAGGCCATTGATGTACATTGCTCTAACATATGACCATAGAATCATTGATGGAAGAGAGGCAGTGTTCTTTTTGAGACGTATCAAAGATACCGTGGAGGACCCTCGCAGGCTTCTGCTTGACATATAA

Protein sequence

>MS.gene072037.t1

MIALSSGGCGNIRNFCHITPGRWISSKPIRDIFHQEASIQTWKRSFSSDNGDNVDVVVPPLAESIEDGTLAKFLKRPGDRVNVDEPIAQIETDKVTIDVPSPESGVILKLLANEGDTVAPGNKIAIISRSADATTHVAPSENAPEKPAPKPTPKASEPEEKKTPKVETTTTEKPKAPTPQSSPTEPQLPPKERERRVPMTRLRKRVAQRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLMSGFIKAAVNALQYQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRDADKMNFADIEKQINVFAKKANAGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRPAVVGGNVVPRPLMYIALTYDHRIIDGREAVFFLRRIKDTVEDPRRLLLDI