Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065539.t1 | XP_003617592.1 | 94.3 | 402 | 23 | 0 | 38 | 439 | 54 | 455 | 1.90E-188 | 668.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065539.t1 | Q8H107 | 75.6 | 390 | 90 | 2 | 54 | 439 | 76 | 464 | 7.2e-141 | 501.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065539.t1 | G7K3L9 | 94.3 | 402 | 23 | 0 | 38 | 439 | 54 | 455 | 1.3e-188 | 668.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065539.t1 | MTR_5g093300 | 97.761 | 402 | 9 | 0 | 38 | 439 | 54 | 455 | 0.0 | 798 |
MS.gene065539.t1 | MTR_2g006820 | 97.519 | 403 | 9 | 1 | 38 | 439 | 51 | 453 | 0.0 | 793 |
MS.gene065539.t1 | MTR_8g018770 | 28.604 | 444 | 249 | 11 | 60 | 437 | 102 | 543 | 8.42e-39 | 147 |
MS.gene065539.t1 | MTR_1g091037 | 30.928 | 388 | 229 | 10 | 80 | 437 | 247 | 625 | 1.02e-33 | 134 |
MS.gene065539.t1 | MTR_1g091037 | 30.928 | 388 | 229 | 10 | 80 | 437 | 255 | 633 | 1.04e-33 | 134 |
MS.gene065539.t1 | MTR_4g120220 | 32.367 | 207 | 133 | 4 | 239 | 439 | 314 | 519 | 1.58e-22 | 100 |
MS.gene065539.t1 | MTR_1g111140 | 25.647 | 425 | 253 | 11 | 72 | 437 | 50 | 470 | 5.71e-22 | 98.2 |
MS.gene065539.t1 | MTR_5g092530 | 95.000 | 40 | 2 | 0 | 337 | 376 | 4 | 43 | 3.29e-19 | 81.3 |
MS.gene065539.t1 | MTR_1g096240 | 32.484 | 157 | 100 | 3 | 283 | 435 | 301 | 455 | 4.72e-18 | 86.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065539.t1 | AT4G26910 | 73.522 | 389 | 100 | 1 | 54 | 439 | 76 | 464 | 0.0 | 582 |
MS.gene065539.t1 | AT4G26910 | 73.522 | 389 | 100 | 1 | 54 | 439 | 75 | 463 | 0.0 | 582 |
MS.gene065539.t1 | AT5G55070 | 72.596 | 416 | 111 | 2 | 26 | 439 | 50 | 464 | 0.0 | 579 |
MS.gene065539.t1 | AT5G55070 | 72.596 | 416 | 111 | 2 | 26 | 439 | 50 | 464 | 0.0 | 579 |
MS.gene065539.t1 | AT4G26910 | 75.342 | 365 | 87 | 1 | 78 | 439 | 1 | 365 | 0.0 | 555 |
MS.gene065539.t1 | AT1G54220 | 28.821 | 458 | 256 | 13 | 47 | 437 | 85 | 539 | 3.61e-39 | 148 |
MS.gene065539.t1 | AT1G54220 | 28.821 | 458 | 256 | 13 | 47 | 437 | 85 | 539 | 3.61e-39 | 148 |
MS.gene065539.t1 | AT3G13930 | 29.412 | 442 | 241 | 12 | 62 | 437 | 103 | 539 | 3.11e-37 | 143 |
MS.gene065539.t1 | AT3G52200 | 37.500 | 232 | 132 | 5 | 214 | 437 | 411 | 637 | 3.15e-34 | 135 |
MS.gene065539.t1 | AT3G52200 | 37.500 | 232 | 132 | 5 | 214 | 437 | 487 | 713 | 1.14e-33 | 134 |
MS.gene065539.t1 | AT3G06850 | 29.208 | 202 | 139 | 3 | 241 | 439 | 282 | 482 | 1.23e-22 | 100 |
MS.gene065539.t1 | AT3G06850 | 29.208 | 202 | 139 | 3 | 241 | 439 | 282 | 482 | 1.23e-22 | 100 |
MS.gene065539.t1 | AT3G25860 | 30.864 | 243 | 153 | 7 | 200 | 437 | 248 | 480 | 2.26e-19 | 90.5 |
MS.gene065539.t1 | AT1G34430 | 32.484 | 157 | 100 | 3 | 283 | 435 | 309 | 463 | 4.85e-18 | 86.7 |
Find 117 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATCAAATGGTGGTGTTTA+TGG | 0.206829 | 5.1:+74415526 | MS.gene065539:CDS |
CCTCCGGCTCACTAGCCTTT+GGG | 0.238417 | 5.1:-74413661 | None:intergenic |
CTTTGTGGAGCAGGTGCTTT+AGG | 0.246900 | 5.1:-74413722 | None:intergenic |
ACCTGAGGTGGGTTGATAAT+AGG | 0.248348 | 5.1:-74415565 | None:intergenic |
AAAGGAACCACTAACCTTAT+AGG | 0.265942 | 5.1:-74411060 | None:intergenic |
TCTGTTGTAGTTTCAACTTT+AGG | 0.270428 | 5.1:-74413695 | None:intergenic |
TGAAAAGCATGGAGTCAAAT+TGG | 0.271200 | 5.1:+74414780 | MS.gene065539:CDS |
CCTGAGGTGGGTTGATAATA+GGG | 0.311518 | 5.1:-74415564 | None:intergenic |
GGATTAATTCAAAACCTATA+AGG | 0.318232 | 5.1:+74411046 | MS.gene065539:CDS |
TCAGCATAGCAAATGTGTTT+TGG | 0.318338 | 5.1:-74413922 | None:intergenic |
TCTGTTTCAATTTGAGCAAT+TGG | 0.327060 | 5.1:-74413228 | None:intergenic |
CTAGCCTTTGGGGCTGGCTT+AGG | 0.329554 | 5.1:-74413650 | None:intergenic |
CTCTTCCATCAATGATTCTA+TGG | 0.339946 | 5.1:-74416091 | None:intergenic |
GTCAAATTGGGACTTATGTC+TGG | 0.343056 | 5.1:+74414793 | MS.gene065539:CDS |
TCCTCCGGCTCACTAGCCTT+TGG | 0.345311 | 5.1:-74413662 | None:intergenic |
TGGGATAGGACTCGCATTTA+CGG | 0.348101 | 5.1:+74404197 | MS.gene065539:CDS |
GGCTTAGGAGCAGGTTTCTC+AGG | 0.352013 | 5.1:-74413635 | None:intergenic |
TATGACAAGGCTTCGGAAAC+GGG | 0.382455 | 5.1:+74413877 | MS.gene065539:CDS |
GGCTCACTAGCCTTTGGGGC+TGG | 0.385354 | 5.1:-74413656 | None:intergenic |
GTTGGAGAGCTTTGTGGAGC+AGG | 0.388293 | 5.1:-74413731 | None:intergenic |
GAAGCTCCGTGCTGATTATA+AGG | 0.392323 | 5.1:+74414747 | MS.gene065539:CDS |
GGCTCAGTTGGAGAGCTTTG+TGG | 0.393131 | 5.1:-74413737 | None:intergenic |
GTGAGCCGTCCCGCGGTTGT+TGG | 0.403007 | 5.1:+74416020 | MS.gene065539:CDS |
TTTGGGGCTGGCTTAGGAGC+AGG | 0.406888 | 5.1:-74413644 | None:intergenic |
TCAATGACTGCATTTACAAT+TGG | 0.409888 | 5.1:-74414943 | None:intergenic |
ACTCGTCTTTCTCTTTCCTT+AGG | 0.413435 | 5.1:-74413770 | None:intergenic |
CGTTTCCGAAGCCTTGTCAT+AGG | 0.415332 | 5.1:-74413875 | None:intergenic |
TATGACCATAGAATCATTGA+TGG | 0.416138 | 5.1:+74416086 | MS.gene065539:CDS |
CTATGACAAGGCTTCGGAAA+CGG | 0.424020 | 5.1:+74413876 | MS.gene065539:CDS |
ATTGTAAATGCAGTCATTGA+TGG | 0.425090 | 5.1:+74414946 | MS.gene065539:CDS |
GCAATGTACATCAGTGGCCT+TGG | 0.441430 | 5.1:-74416056 | None:intergenic |
TGAACGCTTCCATGTTTGAA+TGG | 0.441701 | 5.1:-74412394 | None:intergenic |
GAAAAGCATGGAGTCAAATT+GGG | 0.444613 | 5.1:+74414781 | MS.gene065539:CDS |
TTAGGAGCTTTCTTCTCCTC+CGG | 0.446856 | 5.1:-74413677 | None:intergenic |
CCCTATTATCAACCCACCTC+AGG | 0.456935 | 5.1:+74415564 | MS.gene065539:CDS |
CTCCGGCTCACTAGCCTTTG+GGG | 0.458282 | 5.1:-74413660 | None:intergenic |
TTACATATCAACTTCATTGA+AGG | 0.463280 | 5.1:-74413948 | None:intergenic |
AGCCGTCCCGCGGTTGTTGG+AGG | 0.472187 | 5.1:+74416023 | MS.gene065539:CDS |
CGCAACAGTATCCCCTTCAT+TGG | 0.474947 | 5.1:-74413540 | None:intergenic |
GTTGAATGGCGATGGCCTGC+TGG | 0.482612 | 5.1:+74404119 | MS.gene065539:CDS |
TGATGTTGTTGTCCCTCCAT+TGG | 0.485369 | 5.1:+74413030 | MS.gene065539:CDS |
ATCACACCTGACTCAGGACT+TGG | 0.485461 | 5.1:-74413388 | None:intergenic |
AGCCCCAAAGGCTAGTGAGC+CGG | 0.486831 | 5.1:+74413658 | MS.gene065539:CDS |
TGCGGATAAAATGAACTTTG+CGG | 0.492760 | 5.1:+74415417 | MS.gene065539:CDS |
GGAGGAAGCTGTGGCTCAGT+TGG | 0.493329 | 5.1:-74413749 | None:intergenic |
CGTCTTTCTCTTTCCTTAGG+AGG | 0.498109 | 5.1:-74413767 | None:intergenic |
CTCACATTCTATGGATGCTA+AGG | 0.498752 | 5.1:+74404097 | None:intergenic |
TTGTAAATGCAGTCATTGAT+GGG | 0.501189 | 5.1:+74414947 | MS.gene065539:CDS |
TGATATTGTAAGAGTGCCTC+CGG | 0.502549 | 5.1:-74415509 | None:intergenic |
AGGTTCCTATGACAAGGCTT+CGG | 0.505128 | 5.1:+74413870 | MS.gene065539:intron |
TTTGCAAAGAAGGCTAATGC+TGG | 0.505721 | 5.1:+74415463 | MS.gene065539:CDS |
AACTTTATCAATTGATGAGA+TGG | 0.507014 | 5.1:+74415486 | MS.gene065539:CDS |
GGCACTCTTACAATATCAAA+TGG | 0.507367 | 5.1:+74415514 | MS.gene065539:CDS |
TTCTCAGGTGCAGTCTCAGA+TGG | 0.513900 | 5.1:-74413620 | None:intergenic |
ACAAGATAGCAATCATTTCA+AGG | 0.513907 | 5.1:+74413570 | MS.gene065539:CDS |
CTATGGATGCTAAGGTTGAA+TGG | 0.515837 | 5.1:+74404105 | None:intergenic |
ATTGATATCAGCATAGCTGT+TGG | 0.518591 | 5.1:+74414994 | MS.gene065539:CDS |
TGAGCCACAGCTTCCTCCTA+AGG | 0.520051 | 5.1:+74413754 | MS.gene065539:CDS |
GTGCAGCTTCTAGCCAATGA+AGG | 0.523506 | 5.1:+74413527 | MS.gene065539:intron |
TTATCCGCATTTCGGATGAC+AGG | 0.524831 | 5.1:-74415403 | None:intergenic |
ACGGGTTGCTCAACGGTTGA+AGG | 0.526760 | 5.1:+74413895 | MS.gene065539:CDS |
TTGGCTGAATCCATCGAGGA+TGG | 0.531002 | 5.1:+74413049 | MS.gene065539:CDS |
TCAAATTGGGACTTATGTCT+GGG | 0.531187 | 5.1:+74414794 | MS.gene065539:CDS |
CAGAACATGCAAACCTGAGG+TGG | 0.531376 | 5.1:-74415577 | None:intergenic |
GATGTTCCAAGTCCTGAGTC+AGG | 0.534338 | 5.1:+74413382 | MS.gene065539:CDS |
GAAGGGGATACTGTTGCGCC+AGG | 0.534623 | 5.1:+74413545 | MS.gene065539:CDS |
TGCTCAAATTGAAACAGATA+AGG | 0.537580 | 5.1:+74413233 | MS.gene065539:CDS |
TGCTAGAGTCCCATCCTCGA+TGG | 0.542822 | 5.1:-74413059 | None:intergenic |
TCCTCGATGGATTCAGCCAA+TGG | 0.546717 | 5.1:-74413046 | None:intergenic |
TTGGAGGAAATGTTGTTCCA+AGG | 0.547451 | 5.1:+74416039 | MS.gene065539:CDS |
TTATCAATTGATGAGATGGC+CGG | 0.550379 | 5.1:+74415490 | MS.gene065539:CDS |
TTCTCTAGCAGATCTCCAGC+AGG | 0.554411 | 5.1:-74404134 | None:intergenic |
TGCTCCTAAGCCAGCCCCAA+AGG | 0.557645 | 5.1:+74413646 | MS.gene065539:CDS |
GGGAGCAGGGCCTGGTGACA+AGG | 0.557791 | 5.1:+74413191 | MS.gene065539:intron |
TGACAGTCATACTCGCCAAT+GGG | 0.558597 | 5.1:+74404178 | MS.gene065539:CDS |
GTCATACTCGCCAATGGGAT+AGG | 0.560778 | 5.1:+74404183 | MS.gene065539:CDS |
TTCAGGATCACACCTGACTC+AGG | 0.562746 | 5.1:-74413394 | None:intergenic |
TGCAGCTTCTAGCCAATGAA+GGG | 0.566756 | 5.1:+74413528 | MS.gene065539:intron |
CCCAAAGGCTAGTGAGCCGG+AGG | 0.568181 | 5.1:+74413661 | MS.gene065539:CDS |
ATGATTGCTATCTTGTTACC+TGG | 0.569069 | 5.1:-74413563 | None:intergenic |
TTGACAGTCATACTCGCCAA+TGG | 0.569942 | 5.1:+74404177 | MS.gene065539:CDS |
CTTTCCTTAGGAGGAAGCTG+TGG | 0.571886 | 5.1:-74413758 | None:intergenic |
CATATCAACTTCATTGAAGG+TGG | 0.575631 | 5.1:-74413945 | None:intergenic |
TTCGGAAACGGGTTGCTCAA+CGG | 0.579901 | 5.1:+74413888 | MS.gene065539:CDS |
TTCAATTGTGAGCCGTCCCG+CGG | 0.584894 | 5.1:+74416013 | MS.gene065539:CDS |
TGGCTGAATCCATCGAGGAT+GGG | 0.587628 | 5.1:+74413050 | MS.gene065539:CDS |
CATAGCTGTTGGAACTCCGA+AGG | 0.588524 | 5.1:+74415005 | MS.gene065539:CDS |
CGATGGATTCAGCCAATGGA+GGG | 0.590845 | 5.1:-74413042 | None:intergenic |
ATACCGTGGAGGACCCTCGC+AGG | 0.593381 | 5.1:+74416144 | MS.gene065539:CDS |
TTCCTCCAACAACCGCGGGA+CGG | 0.594469 | 5.1:-74416025 | None:intergenic |
GATGCTTTCGTTGAAAAGCA+TGG | 0.597642 | 5.1:+74414769 | MS.gene065539:CDS |
AACATTTCCTCCAACAACCG+CGG | 0.602311 | 5.1:-74416030 | None:intergenic |
CAGTCTCAGATGGTGCAACG+TGG | 0.608587 | 5.1:-74413610 | None:intergenic |
AAATGCGAGTCCTATCCCAT+TGG | 0.611767 | 5.1:-74404193 | None:intergenic |
TAGAATCATTGATGGAAGAG+AGG | 0.619261 | 5.1:+74416094 | MS.gene065539:CDS |
TCAACATTAACCTTGTCACC+AGG | 0.619340 | 5.1:-74413201 | None:intergenic |
ACATTTCCTCCAACAACCGC+GGG | 0.622555 | 5.1:-74416029 | None:intergenic |
CTGAGGTGGGTTGATAATAG+GGG | 0.623105 | 5.1:-74415563 | None:intergenic |
TCGATGGATTCAGCCAATGG+AGG | 0.624022 | 5.1:-74413043 | None:intergenic |
TGAGTCAGGTGTGATCCTGA+AGG | 0.632483 | 5.1:+74413396 | MS.gene065539:CDS |
TCAATTGATGAGATGGCCGG+AGG | 0.637833 | 5.1:+74415493 | MS.gene065539:CDS |
ATGCTAAGGTTGAATGGCGA+TGG | 0.639232 | 5.1:+74404111 | MS.gene065539:CDS |
ATGTCGAGCAAAAGCCTGCG+AGG | 0.639988 | 5.1:-74416158 | None:intergenic |
AAGAGGCTTCCATTCAAACA+TGG | 0.648188 | 5.1:+74412385 | MS.gene065539:CDS |
GTTAGAGCAATGTACATCAG+TGG | 0.653334 | 5.1:-74416062 | None:intergenic |
AGAACATGCAAACCTGAGGT+GGG | 0.654926 | 5.1:-74415576 | None:intergenic |
TGTCGAGCAAAAGCCTGCGA+GGG | 0.657173 | 5.1:-74416157 | None:intergenic |
AAGCCTGCGAGGGTCCTCCA+CGG | 0.659181 | 5.1:-74416147 | None:intergenic |
ACTCTTACAATATCAAATGG+TGG | 0.666602 | 5.1:+74415517 | MS.gene065539:CDS |
AAGCATCCTTATAATCAGCA+CGG | 0.676021 | 5.1:-74414753 | None:intergenic |
AGTCTCAGATGGTGCAACGT+GGG | 0.682584 | 5.1:-74413609 | None:intergenic |
GAGACGGATCAAAGATACCG+TGG | 0.687859 | 5.1:+74416130 | MS.gene065539:CDS |
GCAGCTTCTAGCCAATGAAG+GGG | 0.691382 | 5.1:+74413529 | MS.gene065539:intron |
TCCATTGGCTGAATCCATCG+AGG | 0.719719 | 5.1:+74413045 | MS.gene065539:CDS |
TGTAAATGCAGTCATTGATG+GGG | 0.721128 | 5.1:+74414948 | MS.gene065539:CDS |
TGTGCCTGTCATCCGAAATG+CGG | 0.724515 | 5.1:+74415399 | MS.gene065539:CDS |
ACGGATCAAAGATACCGTGG+AGG | 0.738229 | 5.1:+74416133 | MS.gene065539:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 74404107 | 74416184 | 74404107 | ID=MS.gene065539 |
chr5.1 | mRNA | 74404107 | 74416184 | 74404107 | ID=MS.gene065539.t1;Parent=MS.gene065539 |
chr5.1 | exon | 74404107 | 74404218 | 74404107 | ID=MS.gene065539.t1.exon1;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74404107 | 74404218 | 74404107 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
chr5.1 | exon | 74411040 | 74411067 | 74411040 | ID=MS.gene065539.t1.exon2;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74411040 | 74411067 | 74411040 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
chr5.1 | exon | 74412371 | 74412432 | 74412371 | ID=MS.gene065539.t1.exon3;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74412371 | 74412432 | 74412371 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
chr5.1 | exon | 74413020 | 74413094 | 74413020 | ID=MS.gene065539.t1.exon4;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74413020 | 74413094 | 74413020 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
chr5.1 | exon | 74413199 | 74413254 | 74413199 | ID=MS.gene065539.t1.exon5;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74413199 | 74413254 | 74413199 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
chr5.1 | exon | 74413373 | 74413417 | 74413373 | ID=MS.gene065539.t1.exon6;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74413373 | 74413417 | 74413373 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
chr5.1 | exon | 74413533 | 74413790 | 74413533 | ID=MS.gene065539.t1.exon7;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74413533 | 74413790 | 74413533 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
chr5.1 | exon | 74413872 | 74413966 | 74413872 | ID=MS.gene065539.t1.exon8;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74413872 | 74413966 | 74413872 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
chr5.1 | exon | 74414735 | 74414825 | 74414735 | ID=MS.gene065539.t1.exon9;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74414735 | 74414825 | 74414735 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
chr5.1 | exon | 74414916 | 74415026 | 74414916 | ID=MS.gene065539.t1.exon10;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74414916 | 74415026 | 74414916 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
chr5.1 | exon | 74415391 | 74415585 | 74415391 | ID=MS.gene065539.t1.exon11;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74415391 | 74415585 | 74415391 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
chr5.1 | exon | 74415993 | 74416184 | 74415993 | ID=MS.gene065539.t1.exon12;Parent=MS.gene065539.t1 |
chr5.1 | CDS | 74415993 | 74416184 | 74415993 | ID=cds.MS.gene065539.t1;Parent=MS.gene065539.t1 |
Gene Sequence |
Protein sequence |