Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044229.t1 | RHN68853.1 | 92.7 | 385 | 16 | 1 | 1 | 373 | 1 | 385 | 7.50E-207 | 729.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044229.t1 | Q9FH04 | 64.1 | 384 | 125 | 2 | 2 | 372 | 6 | 389 | 5.8e-147 | 521.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044229.t1 | A0A396IWN8 | 92.7 | 385 | 16 | 1 | 1 | 373 | 1 | 385 | 5.4e-207 | 729.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044229 | MS.gene83309 | PPI |
| MS.gene030545 | MS.gene044229 | PPI |
| MS.gene044229 | MS.gene069804 | PPI |
| MS.gene044229 | MS.gene042841 | PPI |
| MS.gene044229 | MS.gene70145 | PPI |
| MS.gene044229 | MS.gene73688 | PPI |
| MS.gene044229 | MS.gene49741 | PPI |
| MS.gene044229 | MS.gene79768 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044229.t1 | MTR_3g079180 | 91.969 | 386 | 19 | 1 | 1 | 374 | 1 | 386 | 0.0 | 720 |
| MS.gene044229.t1 | MTR_5g087710 | 72.727 | 385 | 92 | 2 | 2 | 374 | 8 | 391 | 0.0 | 572 |
| MS.gene044229.t1 | MTR_3g099460 | 54.124 | 388 | 162 | 4 | 1 | 373 | 4 | 390 | 1.58e-147 | 422 |
| MS.gene044229.t1 | MTR_3g079170 | 75.185 | 270 | 41 | 2 | 106 | 363 | 26 | 281 | 1.21e-145 | 414 |
| MS.gene044229.t1 | MTR_3g099460 | 53.608 | 388 | 157 | 5 | 1 | 373 | 4 | 383 | 1.58e-143 | 412 |
| MS.gene044229.t1 | MTR_3g099460 | 55.728 | 323 | 129 | 3 | 64 | 373 | 6 | 327 | 1.91e-127 | 369 |
| MS.gene044229.t1 | MTR_1g069430 | 45.623 | 377 | 189 | 5 | 9 | 372 | 4 | 377 | 2.90e-115 | 340 |
| MS.gene044229.t1 | MTR_7g099040 | 44.415 | 376 | 195 | 3 | 5 | 368 | 2 | 375 | 7.69e-113 | 334 |
| MS.gene044229.t1 | MTR_6g068930 | 45.026 | 382 | 192 | 5 | 5 | 374 | 2 | 377 | 2.01e-111 | 330 |
| MS.gene044229.t1 | MTR_3g099460 | 55.401 | 287 | 113 | 3 | 10 | 281 | 13 | 299 | 1.98e-107 | 318 |
| MS.gene044229.t1 | MTR_3g099460 | 53.378 | 296 | 116 | 4 | 1 | 281 | 4 | 292 | 3.02e-103 | 307 |
| MS.gene044229.t1 | MTR_7g068330 | 43.411 | 387 | 202 | 5 | 1 | 372 | 1 | 385 | 2.02e-101 | 305 |
| MS.gene044229.t1 | MTR_3g089940 | 40.674 | 386 | 211 | 4 | 1 | 374 | 1 | 380 | 2.03e-101 | 305 |
| MS.gene044229.t1 | MTR_3g089977 | 40.633 | 379 | 211 | 3 | 6 | 372 | 2 | 378 | 9.06e-101 | 303 |
| MS.gene044229.t1 | MTR_3g089940 | 40.642 | 374 | 208 | 3 | 13 | 374 | 9 | 380 | 2.51e-100 | 302 |
| MS.gene044229.t1 | MTR_3g089970 | 40.318 | 377 | 211 | 3 | 10 | 374 | 7 | 381 | 4.59e-99 | 299 |
| MS.gene044229.t1 | MTR_7g068320 | 42.368 | 380 | 201 | 6 | 9 | 372 | 16 | 393 | 2.28e-94 | 287 |
| MS.gene044229.t1 | MTR_0001s0660 | 39.623 | 371 | 204 | 6 | 13 | 370 | 8 | 371 | 2.69e-90 | 279 |
| MS.gene044229.t1 | MTR_5g045710 | 39.467 | 375 | 204 | 9 | 13 | 372 | 8 | 374 | 4.70e-87 | 268 |
| MS.gene044229.t1 | MTR_3g089940 | 40.173 | 346 | 189 | 4 | 1 | 334 | 1 | 340 | 2.65e-85 | 263 |
| MS.gene044229.t1 | MTR_3g089940 | 40.120 | 334 | 186 | 3 | 13 | 334 | 9 | 340 | 3.29e-84 | 260 |
| MS.gene044229.t1 | MTR_5g045710 | 37.627 | 295 | 164 | 7 | 92 | 372 | 3 | 291 | 6.18e-62 | 201 |
| MS.gene044229.t1 | MTR_8g095220 | 26.790 | 377 | 248 | 11 | 8 | 364 | 47 | 415 | 1.50e-25 | 107 |
| MS.gene044229.t1 | MTR_8g095220 | 27.376 | 263 | 168 | 6 | 8 | 251 | 47 | 305 | 4.05e-18 | 84.3 |
| MS.gene044229.t1 | MTR_6g465010 | 24.096 | 332 | 227 | 10 | 39 | 363 | 23 | 336 | 5.65e-14 | 72.8 |
| MS.gene044229.t1 | MTR_6g466320 | 24.096 | 332 | 227 | 10 | 39 | 363 | 39 | 352 | 8.95e-14 | 72.4 |
| MS.gene044229.t1 | MTR_6g465010 | 24.096 | 332 | 227 | 10 | 39 | 363 | 39 | 352 | 8.95e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044229.t1 | AT5G42250 | 64.062 | 384 | 125 | 2 | 2 | 372 | 6 | 389 | 0.0 | 520 |
| MS.gene044229.t1 | AT4G22110 | 56.842 | 380 | 149 | 4 | 9 | 374 | 11 | 389 | 2.44e-149 | 427 |
| MS.gene044229.t1 | AT4G22110 | 56.842 | 380 | 149 | 4 | 9 | 374 | 11 | 389 | 2.44e-149 | 427 |
| MS.gene044229.t1 | AT1G22440 | 55.729 | 384 | 155 | 4 | 5 | 374 | 4 | 386 | 3.31e-146 | 419 |
| MS.gene044229.t1 | AT1G22430 | 55.091 | 383 | 157 | 4 | 6 | 374 | 7 | 388 | 3.50e-146 | 419 |
| MS.gene044229.t1 | AT1G22430 | 55.091 | 383 | 157 | 4 | 6 | 374 | 7 | 388 | 3.50e-146 | 419 |
| MS.gene044229.t1 | AT5G43940 | 45.699 | 372 | 188 | 3 | 9 | 368 | 4 | 373 | 2.58e-118 | 348 |
| MS.gene044229.t1 | AT5G24760 | 46.234 | 385 | 189 | 5 | 2 | 374 | 3 | 381 | 4.11e-116 | 342 |
| MS.gene044229.t1 | AT5G43940 | 45.330 | 364 | 185 | 3 | 17 | 368 | 24 | 385 | 1.59e-114 | 339 |
| MS.gene044229.t1 | AT1G22430 | 55.709 | 289 | 114 | 3 | 6 | 280 | 7 | 295 | 2.02e-108 | 320 |
| MS.gene044229.t1 | AT5G24760 | 45.810 | 358 | 176 | 5 | 29 | 374 | 1 | 352 | 2.40e-107 | 319 |
| MS.gene044229.t1 | AT5G24760 | 45.810 | 358 | 176 | 5 | 29 | 374 | 1 | 352 | 2.40e-107 | 319 |
| MS.gene044229.t1 | AT1G32780 | 44.529 | 393 | 190 | 8 | 6 | 374 | 2 | 390 | 6.15e-103 | 309 |
| MS.gene044229.t1 | AT1G77120 | 42.133 | 375 | 203 | 3 | 10 | 372 | 5 | 377 | 7.93e-103 | 308 |
| MS.gene044229.t1 | AT1G64710 | 42.820 | 383 | 198 | 7 | 7 | 372 | 2 | 380 | 6.72e-102 | 306 |
| MS.gene044229.t1 | AT4G22110 | 57.812 | 256 | 94 | 3 | 9 | 250 | 11 | 266 | 2.52e-96 | 288 |
| MS.gene044229.t1 | AT1G64710 | 41.551 | 361 | 190 | 7 | 29 | 372 | 1 | 357 | 2.68e-93 | 283 |
| MS.gene044229.t1 | AT1G22430 | 53.788 | 264 | 108 | 3 | 6 | 255 | 7 | 270 | 2.68e-93 | 281 |
| MS.gene044229.t1 | AT1G22430 | 53.788 | 264 | 108 | 3 | 6 | 255 | 7 | 270 | 2.68e-93 | 281 |
| MS.gene044229.t1 | AT5G24760 | 45.556 | 270 | 132 | 4 | 117 | 374 | 1 | 267 | 3.04e-76 | 236 |
| MS.gene044229.t1 | AT1G64710 | 40.000 | 310 | 166 | 6 | 79 | 372 | 6 | 311 | 5.49e-75 | 235 |
| MS.gene044229.t1 | AT5G63620 | 25.000 | 368 | 250 | 9 | 16 | 364 | 57 | 417 | 8.54e-24 | 102 |
| MS.gene044229.t1 | AT5G63620 | 25.000 | 368 | 250 | 9 | 16 | 364 | 57 | 417 | 1.34e-23 | 101 |
| MS.gene044229.t1 | AT5G63620 | 26.104 | 249 | 155 | 7 | 16 | 241 | 57 | 299 | 1.39e-16 | 80.1 |
Find 105 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCATAAGGTGGAGTTTA+AGG | 0.142966 | 3.3:+68084560 | MS.gene044229:CDS |
| ACAATTCAGGGAAATTTATT+TGG | 0.159534 | 3.3:+68084175 | MS.gene044229:CDS |
| TGTATACCTTTACATCTTAT+AGG | 0.232243 | 3.3:-68081760 | None:intergenic |
| GCCCCGTTGAGAGGAATTTC+TGG | 0.242777 | 3.3:-68082684 | None:intergenic |
| TGGGTCAATCTTTGTTATAT+TGG | 0.266973 | 3.3:-68082664 | None:intergenic |
| GCCTCATGGCCCAGAATTCT+TGG | 0.272725 | 3.3:-68082118 | None:intergenic |
| GTATACCTTTACATCTTATA+GGG | 0.303344 | 3.3:-68081759 | None:intergenic |
| TGTGGAGCAACCAAGATTAT+AGG | 0.322366 | 3.3:+68083265 | MS.gene044229:CDS |
| AATGTCTTCGATGCAAGATT+TGG | 0.332379 | 3.3:+68084619 | MS.gene044229:CDS |
| ATTTAATCAGGAAAGAAGTT+TGG | 0.340813 | 3.3:+68083539 | MS.gene044229:intron |
| TCATGGTGGGAAGACAATTC+AGG | 0.351909 | 3.3:+68084162 | MS.gene044229:CDS |
| ACTACTGCTGAGGCTTATTC+TGG | 0.353117 | 3.3:-68084131 | None:intergenic |
| GCTGAGGGAGCCAGACTTTG+TGG | 0.365458 | 3.3:+68083247 | MS.gene044229:CDS |
| GACATCTACGCCTATAATCT+TGG | 0.373925 | 3.3:-68083275 | None:intergenic |
| CTCCTATACCACAACTTAGA+AGG | 0.376928 | 3.3:-68082710 | None:intergenic |
| ACCCAGAAATTCCTCTCAAC+GGG | 0.378125 | 3.3:+68082682 | MS.gene044229:CDS |
| CTTGGTTGCTCCACAAAGTC+TGG | 0.394844 | 3.3:-68083257 | None:intergenic |
| TCCGTTTAGGTCAGTAAATC+TGG | 0.407059 | 3.3:-68082580 | None:intergenic |
| AAGTTCGGATCCGTATTATA+TGG | 0.409171 | 3.3:+68081943 | MS.gene044229:CDS |
| TGAAGTTACAAAAGGAGATA+TGG | 0.411416 | 3.3:+68082440 | MS.gene044229:CDS |
| TTCTGGGCCATGAGGCAATT+GGG | 0.419100 | 3.3:+68082125 | MS.gene044229:CDS |
| CTGAGGCTTATTCTGGATCC+AGG | 0.422977 | 3.3:-68084124 | None:intergenic |
| GATGTATGATCTCTCCGTTT+AGG | 0.427110 | 3.3:-68082593 | None:intergenic |
| CACCAATGCCACGTGAAGTT+CGG | 0.441004 | 3.3:+68081928 | MS.gene044229:CDS |
| CCCCGTTGAGAGGAATTTCT+GGG | 0.447938 | 3.3:-68082683 | None:intergenic |
| CATGTATCGTTTGAGTAGAA+TGG | 0.453878 | 3.3:-68084224 | None:intergenic |
| GGATGAATTTGTCACTCATA+AGG | 0.455139 | 3.3:+68084548 | MS.gene044229:CDS |
| TCTATACACTCCTCACAATC+TGG | 0.457455 | 3.3:-68082480 | None:intergenic |
| ATTAGTACAAAGGTTGCTCT+TGG | 0.458794 | 3.3:-68082514 | None:intergenic |
| AGAACAGCAGGTGTGGAGCC+AGG | 0.460110 | 3.3:+68082930 | MS.gene044229:CDS |
| CATTCTACTCAAACGATACA+TGG | 0.461387 | 3.3:+68084225 | MS.gene044229:CDS |
| TTATTAACAGGAACTGCAGT+TGG | 0.464276 | 3.3:+68084527 | MS.gene044229:intron |
| TCCCGTTCAAAGTTTCTCCT+TGG | 0.465422 | 3.3:+68082538 | MS.gene044229:CDS |
| AGCAGTAGTGAGGTCCTTCA+TGG | 0.465596 | 3.3:+68084145 | MS.gene044229:CDS |
| ATGCTTTGCCTTCAGGGTTG+GGG | 0.468469 | 3.3:+68084073 | MS.gene044229:intron |
| ATTCTGGGCCATGAGGCAAT+TGG | 0.475497 | 3.3:+68082124 | MS.gene044229:CDS |
| TGGGAGCAAACCTGTGAGCC+AGG | 0.479328 | 3.3:+68083592 | MS.gene044229:CDS |
| TCAATCACCAGTGGCTCACC+AGG | 0.480883 | 3.3:-68081888 | None:intergenic |
| GAGATCGATGTGGCAGATAG+AGG | 0.484048 | 3.3:-68081967 | None:intergenic |
| TTGTAGGGGTAGGTGCTGCT+TGG | 0.489655 | 3.3:+68082907 | MS.gene044229:intron |
| TCCAAGGAGAAACTTTGAAC+GGG | 0.490089 | 3.3:-68082539 | None:intergenic |
| CTCACAGACTTTGTCCATGC+TGG | 0.491004 | 3.3:+68083563 | MS.gene044229:CDS |
| ACCAGATTTACTGACCTAAA+CGG | 0.492338 | 3.3:+68082579 | MS.gene044229:CDS |
| GTGTGTCGGTATGGCGTCAT+TGG | 0.492650 | 3.3:+68083871 | MS.gene044229:CDS |
| AGAATGGATACATGAGACTT+AGG | 0.492709 | 3.3:-68084208 | None:intergenic |
| CGAACTTCACGTGGCATTGG+TGG | 0.492822 | 3.3:-68081927 | None:intergenic |
| ATTCAGGGAAATTTATTTGG+AGG | 0.493146 | 3.3:+68084178 | MS.gene044229:CDS |
| CTAAGTTGTGGTATAGGAGC+AGG | 0.495846 | 3.3:+68082714 | MS.gene044229:CDS |
| TGCCTTCTAAGTTGTGGTAT+AGG | 0.499801 | 3.3:+68082708 | MS.gene044229:CDS |
| GATGTAACTGAAGTTACAAA+AGG | 0.502449 | 3.3:+68082432 | MS.gene044229:CDS |
| CATGGTGGGAAGACAATTCA+GGG | 0.511960 | 3.3:+68084163 | MS.gene044229:CDS |
| TTTGTTTCCTAGGTTGCTGA+GGG | 0.512157 | 3.3:+68083232 | MS.gene044229:intron |
| CGCGTATGCTTCTTGCAGAA+AGG | 0.512539 | 3.3:+68083901 | MS.gene044229:CDS |
| ATCCGAACTTCACGTGGCAT+TGG | 0.515812 | 3.3:-68081930 | None:intergenic |
| GAACAGCAGGTGTGGAGCCA+GGG | 0.526658 | 3.3:+68082931 | MS.gene044229:CDS |
| GGGAACCCTATAAGATGTAA+AGG | 0.527076 | 3.3:+68081754 | MS.gene044229:CDS |
| CATAGGGTTGTGGAAAGTGT+AGG | 0.527455 | 3.3:+68082405 | MS.gene044229:intron |
| GATTATTGCTTTGAGTGTGT+CGG | 0.532806 | 3.3:+68083857 | MS.gene044229:CDS |
| ATAGGGTTGTGGAAAGTGTA+GGG | 0.534378 | 3.3:+68082406 | MS.gene044229:intron |
| GGTGCTGCTTGGAGAACAGC+AGG | 0.537682 | 3.3:+68082918 | MS.gene044229:CDS |
| TTGCTTTGAGTGTGTCGGTA+TGG | 0.539977 | 3.3:+68083862 | MS.gene044229:CDS |
| AGAGGCTAGACCTGGCTCAC+AGG | 0.544008 | 3.3:-68083602 | None:intergenic |
| GTCTTAGGACTGGACAAACC+TGG | 0.544088 | 3.3:+68084106 | MS.gene044229:CDS |
| AGATAGAGGACCATATAATA+CGG | 0.553771 | 3.3:-68081953 | None:intergenic |
| GTCATCACAGAGATGACTGA+TGG | 0.556826 | 3.3:+68083827 | MS.gene044229:CDS |
| TGCTCCCACATTCTCCAGCA+TGG | 0.557013 | 3.3:-68083577 | None:intergenic |
| GCAACAGCAAGTGAAGGAGA+AGG | 0.557638 | 3.3:+68081733 | MS.gene044229:CDS |
| TCTTCGATGCAAGATTTGGA+TGG | 0.559637 | 3.3:+68084623 | MS.gene044229:CDS |
| GGTTGTGGAAAGTGTAGGGA+AGG | 0.561446 | 3.3:+68082410 | MS.gene044229:CDS |
| GTTTGTTTCCTAGGTTGCTG+AGG | 0.562555 | 3.3:+68083231 | MS.gene044229:intron |
| TTTGTCCATGCTGGAGAATG+TGG | 0.568555 | 3.3:+68083572 | MS.gene044229:CDS |
| TTCAAGCTTCAGCGAGTACA+CGG | 0.568787 | 3.3:+68082629 | MS.gene044229:CDS |
| CAACAGCAAGTGAAGGAGAA+GGG | 0.570797 | 3.3:+68081734 | MS.gene044229:CDS |
| TGAACGGGAAATTAGTACAA+AGG | 0.582252 | 3.3:-68082524 | None:intergenic |
| AGAAGGCACGCCCCGTTGAG+AGG | 0.588891 | 3.3:-68082693 | None:intergenic |
| AATAAGACCTGGTGAGCCAC+TGG | 0.589542 | 3.3:+68081881 | MS.gene044229:CDS |
| GGGGCGTGCCTTCTAAGTTG+TGG | 0.589755 | 3.3:+68082702 | MS.gene044229:CDS |
| TCATCACAGAGATGACTGAT+GGG | 0.591725 | 3.3:+68083828 | MS.gene044229:CDS |
| ACTGGTGATTGAAGAGATCA+TGG | 0.592447 | 3.3:+68081899 | MS.gene044229:CDS |
| GAATTGTCTTCCCACCATGA+AGG | 0.596283 | 3.3:-68084159 | None:intergenic |
| TTCTCATGTCTAGGCATCCA+AGG | 0.596709 | 3.3:-68082555 | None:intergenic |
| AATCTGGTGTTCTCATGTCT+AGG | 0.597121 | 3.3:-68082564 | None:intergenic |
| ATCCAAGGAGAAACTTTGAA+CGG | 0.602662 | 3.3:-68082540 | None:intergenic |
| AAACTCACCCAATTGCCTCA+TGG | 0.605840 | 3.3:-68082132 | None:intergenic |
| GACCCAGAAATTCCTCTCAA+CGG | 0.605943 | 3.3:+68082681 | MS.gene044229:CDS |
| TCCAAGAATTCTGGGCCATG+AGG | 0.616098 | 3.3:+68082117 | MS.gene044229:CDS |
| TGCTTGGAGAACAGCAGGTG+TGG | 0.624709 | 3.3:+68082923 | MS.gene044229:CDS |
| TGAATTTGTCACTCATAAGG+TGG | 0.628279 | 3.3:+68084551 | MS.gene044229:CDS |
| ATGGCAGCAACAGCAAGTGA+AGG | 0.628707 | 3.3:+68081727 | MS.gene044229:CDS |
| AATAAGCCTCAGCAGTAGTG+AGG | 0.634060 | 3.3:+68084135 | MS.gene044229:CDS |
| ATACGGATCCGAACTTCACG+TGG | 0.634483 | 3.3:-68081936 | None:intergenic |
| AGTAGTGAGGTCCTTCATGG+TGG | 0.635541 | 3.3:+68084148 | MS.gene044229:CDS |
| GCGGCAGTTGCAATAAGACC+TGG | 0.637042 | 3.3:+68081870 | MS.gene044229:intron |
| GTAGTGAGGTCCTTCATGGT+GGG | 0.638908 | 3.3:+68084149 | MS.gene044229:CDS |
| GAATAAAGAAACCTGCATGT+CGG | 0.640192 | 3.3:-68081997 | None:intergenic |
| GAAGGACCTCACTACTGCTG+AGG | 0.649953 | 3.3:-68084141 | None:intergenic |
| ATGATCTCTTCAATCACCAG+TGG | 0.657809 | 3.3:-68081897 | None:intergenic |
| TTGTCCATGCTGGAGAATGT+GGG | 0.665704 | 3.3:+68083573 | MS.gene044229:CDS |
| CATCACAGAGATGACTGATG+GGG | 0.667922 | 3.3:+68083829 | MS.gene044229:CDS |
| ATCACAGAGATGACTGATGG+GGG | 0.673303 | 3.3:+68083830 | MS.gene044229:CDS |
| AAAATAGCTACTGTAGACCC+TGG | 0.682475 | 3.3:-68082948 | None:intergenic |
| CCCAGAAATTCCTCTCAACG+GGG | 0.710768 | 3.3:+68082683 | MS.gene044229:CDS |
| ACTCAAACGATACATGGACA+AGG | 0.723247 | 3.3:+68084231 | MS.gene044229:CDS |
| AAGCTTCAGCGAGTACACGG+TGG | 0.755733 | 3.3:+68082632 | MS.gene044229:CDS |
| GGTGATTGAAGAGATCATGG+TGG | 0.829880 | 3.3:+68081902 | MS.gene044229:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATTATTATTAATTAAAG+TGG | - | chr3.3:68083166-68083185 | None:intergenic | 10.0% |
| !! | AAATCAATTAAAAAACATAG+AGG | - | chr3.3:68082045-68082064 | None:intergenic | 15.0% |
| !! | AAATCACAAACTAATAATTA+AGG | - | chr3.3:68082169-68082188 | None:intergenic | 15.0% |
| !! | ATTGATCATAAATAAAAGAA+AGG | + | chr3.3:68082815-68082834 | MS.gene044229:intron | 15.0% |
| !! | TATAAAATTCAAATCATTTG+AGG | + | chr3.3:68084475-68084494 | MS.gene044229:intron | 15.0% |
| !! | TTAAATCATCAAAATACATA+AGG | - | chr3.3:68082205-68082224 | None:intergenic | 15.0% |
| !!! | ATGTTTTAAAAATGTTTTGA+AGG | + | chr3.3:68082078-68082097 | MS.gene044229:intron | 15.0% |
| !! | CCAATATTAATTCTAAATTG+TGG | + | chr3.3:68082784-68082803 | MS.gene044229:intron | 20.0% |
| !! | CTAACTAACTAAATATAGAA+AGG | + | chr3.3:68082760-68082779 | MS.gene044229:intron | 20.0% |
| !! | TCATCCTCTTATATTTATTT+AGG | + | chr3.3:68083930-68083949 | MS.gene044229:intron | 20.0% |
| !!! | AAATTATGATTCACAGTTTT+TGG | + | chr3.3:68083985-68084004 | MS.gene044229:intron | 20.0% |
| !!! | AATCAATTTTTATGTGACAT+AGG | + | chr3.3:68082388-68082407 | MS.gene044229:intron | 20.0% |
| !!! | AATGAACTGTTTTTTTACTA+AGG | + | chr3.3:68083322-68083341 | MS.gene044229:intron | 20.0% |
| !!! | ATCAATTTTTATGTGACATA+GGG | + | chr3.3:68082389-68082408 | MS.gene044229:intron | 20.0% |
| !!! | CCACAATTTAGAATTAATAT+TGG | - | chr3.3:68082787-68082806 | None:intergenic | 20.0% |
| !!! | GTGTTTGTTTTTATTTAATC+AGG | + | chr3.3:68083527-68083546 | MS.gene044229:intron | 20.0% |
| ! | AATTTCTTTGAACTCATTTC+TGG | + | chr3.3:68084264-68084283 | MS.gene044229:intron | 25.0% |
| ! | ACAATTCAGGGAAATTTATT+TGG | + | chr3.3:68084175-68084194 | MS.gene044229:CDS | 25.0% |
| ! | ATCTTTGATCTAATGCAAAA+AGG | - | chr3.3:68083714-68083733 | None:intergenic | 25.0% |
| ! | ATTAATTAAAGTGGCACTAA+TGG | - | chr3.3:68083157-68083176 | None:intergenic | 25.0% |
| ! | ATTACTCATTACTTCTCAAT+CGG | + | chr3.3:68083209-68083228 | MS.gene044229:intron | 25.0% |
| ! | ATTATATAAGCTCGTAATAG+TGG | + | chr3.3:68084043-68084062 | MS.gene044229:intron | 25.0% |
| ! | ATTCAAAACTTCCATTTGTA+GGG | + | chr3.3:68082892-68082911 | MS.gene044229:intron | 25.0% |
| ! | ATTTAATCAGGAAAGAAGTT+TGG | + | chr3.3:68083539-68083558 | MS.gene044229:intron | 25.0% |
| ! | GTATACCTTTACATCTTATA+GGG | - | chr3.3:68081762-68081781 | None:intergenic | 25.0% |
| ! | TATTCAAAACTTCCATTTGT+AGG | + | chr3.3:68082891-68082910 | MS.gene044229:intron | 25.0% |
| ! | TCTGCCTAAATAAATATAAG+AGG | - | chr3.3:68083937-68083956 | None:intergenic | 25.0% |
| ! | TGTATACCTTTACATCTTAT+AGG | - | chr3.3:68081763-68081782 | None:intergenic | 25.0% |
| ! | TTACTAGAATTGGGAAATTA+TGG | + | chr3.3:68083416-68083435 | MS.gene044229:intron | 25.0% |
| ! | TTTATGTCATGTAGTCATAT+TGG | + | chr3.3:68082282-68082301 | MS.gene044229:intron | 25.0% |
| !! | TACCAACTTCAAATTTTTCT+GGG | - | chr3.3:68083303-68083322 | None:intergenic | 25.0% |
| !! | TTACCAACTTCAAATTTTTC+TGG | - | chr3.3:68083304-68083323 | None:intergenic | 25.0% |
| !!! | GCTTTTGATTTATTGAGAAA+CGG | + | chr3.3:68084594-68084613 | MS.gene044229:CDS | 25.0% |
| AAAAACAATTGTCTTAGGAC+TGG | + | chr3.3:68084096-68084115 | MS.gene044229:CDS | 30.0% | |
| ACATAATGTGTGATAGAAAC+TGG | - | chr3.3:68083469-68083488 | None:intergenic | 30.0% | |
| AGATAGAGGACCATATAATA+CGG | - | chr3.3:68081956-68081975 | None:intergenic | 30.0% | |
| ATGATGTATCATAAGAATCC+TGG | - | chr3.3:68084411-68084430 | None:intergenic | 30.0% | |
| ATTCAGGGAAATTTATTTGG+AGG | + | chr3.3:68084178-68084197 | MS.gene044229:CDS | 30.0% | |
| GATGTAACTGAAGTTACAAA+AGG | + | chr3.3:68082432-68082451 | MS.gene044229:CDS | 30.0% | |
| TAAAGATTGAAGCTTTCAAG+AGG | - | chr3.3:68083623-68083642 | None:intergenic | 30.0% | |
| TCACAATCTGGTAGAAAAAT+TGG | - | chr3.3:68082471-68082490 | None:intergenic | 30.0% | |
| TGAAGTTACAAAAGGAGATA+TGG | + | chr3.3:68082440-68082459 | MS.gene044229:CDS | 30.0% | |
| TTCAAAACTTCCATTTGTAG+GGG | + | chr3.3:68082893-68082912 | MS.gene044229:intron | 30.0% | |
| ! | AACCCAGAAAAATTTGAAGT+TGG | + | chr3.3:68083298-68083317 | MS.gene044229:CDS | 30.0% |
| ! | AATTTTTCTACCAGATTGTG+AGG | + | chr3.3:68082470-68082489 | MS.gene044229:CDS | 30.0% |
| ! | AGTTTTGCATTATAACCTCA+AGG | + | chr3.3:68083092-68083111 | MS.gene044229:intron | 30.0% |
| ! | CATTTTATAACCGTTCTCAA+GGG | - | chr3.3:68083133-68083152 | None:intergenic | 30.0% |
| ! | GTCTATCAAAATTTTCCATG+AGG | + | chr3.3:68083051-68083070 | MS.gene044229:intron | 30.0% |
| ! | GTTTTGCATTATAACCTCAA+GGG | + | chr3.3:68083093-68083112 | MS.gene044229:intron | 30.0% |
| ! | TCATTTTATAACCGTTCTCA+AGG | - | chr3.3:68083134-68083153 | None:intergenic | 30.0% |
| ! | TGGGTCAATCTTTGTTATAT+TGG | - | chr3.3:68082667-68082686 | None:intergenic | 30.0% |
| !!! | TATTTTTGGCTAGGATCTAT+TGG | + | chr3.3:68082965-68082984 | MS.gene044229:intron | 30.0% |
| AAGTTCGGATCCGTATTATA+TGG | + | chr3.3:68081943-68081962 | MS.gene044229:CDS | 35.0% | |
| AATATCATATCTACTTCCCC+TGG | - | chr3.3:68083690-68083709 | None:intergenic | 35.0% | |
| AATGTCTTCGATGCAAGATT+TGG | + | chr3.3:68084619-68084638 | MS.gene044229:CDS | 35.0% | |
| AATTTGAACTTTGTCCCTTG+AGG | - | chr3.3:68083110-68083129 | None:intergenic | 35.0% | |
| ACCAGATTTACTGACCTAAA+CGG | + | chr3.3:68082579-68082598 | MS.gene044229:CDS | 35.0% | |
| ACCTTGCAGATTACTAGAAT+TGG | + | chr3.3:68083406-68083425 | MS.gene044229:intron | 35.0% | |
| AGAATGGATACATGAGACTT+AGG | - | chr3.3:68084211-68084230 | None:intergenic | 35.0% | |
| AGAATTCTTGGAAAAAAGCC+AGG | - | chr3.3:68082109-68082128 | None:intergenic | 35.0% | |
| AGTTCAAATTCCCTTGAGAA+CGG | + | chr3.3:68083120-68083139 | MS.gene044229:intron | 35.0% | |
| ATCCAAGGAGAAACTTTGAA+CGG | - | chr3.3:68082543-68082562 | None:intergenic | 35.0% | |
| ATTAGTACAAAGGTTGCTCT+TGG | - | chr3.3:68082517-68082536 | None:intergenic | 35.0% | |
| CACTGCAATACTATATGTAG+CGG | + | chr3.3:68081851-68081870 | MS.gene044229:intron | 35.0% | |
| CATGTATCGTTTGAGTAGAA+TGG | - | chr3.3:68084227-68084246 | None:intergenic | 35.0% | |
| CATTCTACTCAAACGATACA+TGG | + | chr3.3:68084225-68084244 | MS.gene044229:CDS | 35.0% | |
| CCTTGCAGATTACTAGAATT+GGG | + | chr3.3:68083407-68083426 | MS.gene044229:intron | 35.0% | |
| CTGCAGTTCCTGTTAATAAA+CGG | - | chr3.3:68084526-68084545 | None:intergenic | 35.0% | |
| GAATAAAGAAACCTGCATGT+CGG | - | chr3.3:68082000-68082019 | None:intergenic | 35.0% | |
| GGATGAATTTGTCACTCATA+AGG | + | chr3.3:68084548-68084567 | MS.gene044229:CDS | 35.0% | |
| TGAACGGGAAATTAGTACAA+AGG | - | chr3.3:68082527-68082546 | None:intergenic | 35.0% | |
| TGAATTTGTCACTCATAAGG+TGG | + | chr3.3:68084551-68084570 | MS.gene044229:CDS | 35.0% | |
| TGGGGAAAAACAATTGTCTT+AGG | + | chr3.3:68084091-68084110 | MS.gene044229:CDS | 35.0% | |
| TTATTAACAGGAACTGCAGT+TGG | + | chr3.3:68084527-68084546 | MS.gene044229:intron | 35.0% | |
| ! | AAAAACATAGAGGTGTGCTT+TGG | - | chr3.3:68082035-68082054 | None:intergenic | 35.0% |
| ! | GATTATTGCTTTGAGTGTGT+CGG | + | chr3.3:68083857-68083876 | MS.gene044229:CDS | 35.0% |
| ! | TGTTTTGCTAGCATTTCTTG+TGG | - | chr3.3:68084324-68084343 | None:intergenic | 35.0% |
| ! | TTTTATGTGACATAGGGTTG+TGG | + | chr3.3:68082395-68082414 | MS.gene044229:intron | 35.0% |
| !! | GATCTATTGGATTAGCAGTA+AGG | + | chr3.3:68082978-68082997 | MS.gene044229:intron | 35.0% |
| !!! | GGCTTTTTTCCAAGAATTCT+GGG | + | chr3.3:68082109-68082128 | MS.gene044229:CDS | 35.0% |
| !!! | TACAGTAGCTATTTTTGGCT+AGG | + | chr3.3:68082956-68082975 | MS.gene044229:intron | 35.0% |
| !!! | TGGCTTTTTTCCAAGAATTC+TGG | + | chr3.3:68082108-68082127 | MS.gene044229:CDS | 35.0% |
| AAAACCTATGCTTTGCCTTC+AGG | + | chr3.3:68084066-68084085 | MS.gene044229:intron | 40.0% | |
| AAAATAGCTACTGTAGACCC+TGG | - | chr3.3:68082951-68082970 | None:intergenic | 40.0% | |
| AAACCTATGCTTTGCCTTCA+GGG | + | chr3.3:68084067-68084086 | MS.gene044229:intron | 40.0% | |
| AAACTTCCATTTGTAGGGGT+AGG | + | chr3.3:68082897-68082916 | MS.gene044229:intron | 40.0% | |
| AATCTGGTGTTCTCATGTCT+AGG | - | chr3.3:68082567-68082586 | None:intergenic | 40.0% | |
| ACTCAAACGATACATGGACA+AGG | + | chr3.3:68084231-68084250 | MS.gene044229:CDS | 40.0% | |
| ACTGGTGATTGAAGAGATCA+TGG | + | chr3.3:68081899-68081918 | MS.gene044229:CDS | 40.0% | |
| AGAGGGGAAATTAAAGACTC+TGG | - | chr3.3:68083662-68083681 | None:intergenic | 40.0% | |
| AGTTAGTGTTCTCATTGCTG+AGG | - | chr3.3:68082746-68082765 | None:intergenic | 40.0% | |
| ATGATCTCTTCAATCACCAG+TGG | - | chr3.3:68081900-68081919 | None:intergenic | 40.0% | |
| ATTCTTGGAAAAAAGCCAGG+AGG | - | chr3.3:68082106-68082125 | None:intergenic | 40.0% | |
| CACTCATAAGGTGGAGTTTA+AGG | + | chr3.3:68084560-68084579 | MS.gene044229:CDS | 40.0% | |
| CAGTAAGGACTTCTCAAACT+TGG | + | chr3.3:68082993-68083012 | MS.gene044229:intron | 40.0% | |
| CCCAATTCTAGTAATCTGCA+AGG | - | chr3.3:68083410-68083429 | None:intergenic | 40.0% | |
| CTCCTATACCACAACTTAGA+AGG | - | chr3.3:68082713-68082732 | None:intergenic | 40.0% | |
| GACATCTACGCCTATAATCT+TGG | - | chr3.3:68083278-68083297 | None:intergenic | 40.0% | |
| GATGTATGATCTCTCCGTTT+AGG | - | chr3.3:68082596-68082615 | None:intergenic | 40.0% | |
| GGGAACCCTATAAGATGTAA+AGG | + | chr3.3:68081754-68081773 | MS.gene044229:CDS | 40.0% | |
| TCATCACAGAGATGACTGAT+GGG | + | chr3.3:68083828-68083847 | MS.gene044229:CDS | 40.0% | |
| TCCAAGGAGAAACTTTGAAC+GGG | - | chr3.3:68082542-68082561 | None:intergenic | 40.0% | |
| TCCGTTTAGGTCAGTAAATC+TGG | - | chr3.3:68082583-68082602 | None:intergenic | 40.0% | |
| TCTATACACTCCTCACAATC+TGG | - | chr3.3:68082483-68082502 | None:intergenic | 40.0% | |
| TCTTCGATGCAAGATTTGGA+TGG | + | chr3.3:68084623-68084642 | MS.gene044229:CDS | 40.0% | |
| TGCCTTCTAAGTTGTGGTAT+AGG | + | chr3.3:68082708-68082727 | MS.gene044229:CDS | 40.0% | |
| TGTGGAGCAACCAAGATTAT+AGG | + | chr3.3:68083265-68083284 | MS.gene044229:CDS | 40.0% | |
| TTCTTGGAAAAAAGCCAGGA+GGG | - | chr3.3:68082105-68082124 | None:intergenic | 40.0% | |
| TTTGTTTCCTAGGTTGCTGA+GGG | + | chr3.3:68083232-68083251 | MS.gene044229:intron | 40.0% | |
| ! | AATTTCCCCTCTTGTTTCCA+GGG | + | chr3.3:68083670-68083689 | MS.gene044229:intron | 40.0% |
| ! | ATAGGGTTGTGGAAAGTGTA+GGG | + | chr3.3:68082406-68082425 | MS.gene044229:intron | 40.0% |
| ! | GTTTTGCGCCGTTTATTAAC+AGG | + | chr3.3:68084515-68084534 | MS.gene044229:intron | 40.0% |
| ! | TAATTTCCCCTCTTGTTTCC+AGG | + | chr3.3:68083669-68083688 | MS.gene044229:intron | 40.0% |
| !! | GGGTCTACAGTAGCTATTTT+TGG | + | chr3.3:68082951-68082970 | MS.gene044229:intron | 40.0% |
| !! | TCTCAATCGGTTTGTTTCCT+AGG | + | chr3.3:68083222-68083241 | MS.gene044229:intron | 40.0% |
| AAACTCACCCAATTGCCTCA+TGG | - | chr3.3:68082135-68082154 | None:intergenic | 45.0% | |
| AATAAGCCTCAGCAGTAGTG+AGG | + | chr3.3:68084135-68084154 | MS.gene044229:CDS | 45.0% | |
| ACCCAGAAATTCCTCTCAAC+GGG | + | chr3.3:68082682-68082701 | MS.gene044229:CDS | 45.0% | |
| ACTACTGCTGAGGCTTATTC+TGG | - | chr3.3:68084134-68084153 | None:intergenic | 45.0% | |
| ATCACAGAGATGACTGATGG+GGG | + | chr3.3:68083830-68083849 | MS.gene044229:CDS | 45.0% | |
| CAACAGCAAGTGAAGGAGAA+GGG | + | chr3.3:68081734-68081753 | MS.gene044229:CDS | 45.0% | |
| CATCACAGAGATGACTGATG+GGG | + | chr3.3:68083829-68083848 | MS.gene044229:CDS | 45.0% | |
| CTAAGTTGTGGTATAGGAGC+AGG | + | chr3.3:68082714-68082733 | MS.gene044229:CDS | 45.0% | |
| GAATTGTCTTCCCACCATGA+AGG | - | chr3.3:68084162-68084181 | None:intergenic | 45.0% | |
| GACCCAGAAATTCCTCTCAA+CGG | + | chr3.3:68082681-68082700 | MS.gene044229:CDS | 45.0% | |
| GATGCTAAGCTAACACCTCA+TGG | - | chr3.3:68083069-68083088 | None:intergenic | 45.0% | |
| GGTGATTGAAGAGATCATGG+TGG | + | chr3.3:68081902-68081921 | MS.gene044229:CDS | 45.0% | |
| GTCATCACAGAGATGACTGA+TGG | + | chr3.3:68083827-68083846 | MS.gene044229:CDS | 45.0% | |
| GTTTGTTTCCTAGGTTGCTG+AGG | + | chr3.3:68083231-68083250 | MS.gene044229:intron | 45.0% | |
| TACTTCCCCTGGAAACAAGA+GGG | - | chr3.3:68083679-68083698 | None:intergenic | 45.0% | |
| TATGCTTTGCCTTCAGGGTT+GGG | + | chr3.3:68084072-68084091 | MS.gene044229:intron | 45.0% | |
| TCCCGTTCAAAGTTTCTCCT+TGG | + | chr3.3:68082538-68082557 | MS.gene044229:CDS | 45.0% | |
| TCTGAATGTGACTGCTGAGT+AGG | + | chr3.3:68083805-68083824 | MS.gene044229:intron | 45.0% | |
| TTCAAGCTTCAGCGAGTACA+CGG | + | chr3.3:68082629-68082648 | MS.gene044229:CDS | 45.0% | |
| TTCTCATGTCTAGGCATCCA+AGG | - | chr3.3:68082558-68082577 | None:intergenic | 45.0% | |
| TTGTCCATGCTGGAGAATGT+GGG | + | chr3.3:68083573-68083592 | MS.gene044229:CDS | 45.0% | |
| TTTGTCCATGCTGGAGAATG+TGG | + | chr3.3:68083572-68083591 | MS.gene044229:CDS | 45.0% | |
| ! | AGTGTGTTTGCACTTTTGCC+AGG | + | chr3.3:68084390-68084409 | MS.gene044229:intron | 45.0% |
| ! | ATTTCCCCTCTTGTTTCCAG+GGG | + | chr3.3:68083671-68083690 | MS.gene044229:intron | 45.0% |
| ! | CATAGGGTTGTGGAAAGTGT+AGG | + | chr3.3:68082405-68082424 | MS.gene044229:intron | 45.0% |
| ! | CATGGTGGGAAGACAATTCA+GGG | + | chr3.3:68084163-68084182 | MS.gene044229:CDS | 45.0% |
| ! | TCATGGTGGGAAGACAATTC+AGG | + | chr3.3:68084162-68084181 | MS.gene044229:CDS | 45.0% |
| ! | TTGCTTTGAGTGTGTCGGTA+TGG | + | chr3.3:68083862-68083881 | MS.gene044229:CDS | 45.0% |
| !! | TTGTTTTTCCCCAACCCTGA+AGG | - | chr3.3:68084084-68084103 | None:intergenic | 45.0% |
| !!! | AATGTTTTGAAGGACCCTCC+TGG | + | chr3.3:68082088-68082107 | MS.gene044229:intron | 45.0% |
| !! | TAATTAATAATAATTTGAAA+AGG | + | chr3.3:68083169-68083188 | MS.gene044229:intron | 5.0% |
| AATAAGACCTGGTGAGCCAC+TGG | + | chr3.3:68081881-68081900 | MS.gene044229:CDS | 50.0% | |
| ACTTCCCCTGGAAACAAGAG+GGG | - | chr3.3:68083678-68083697 | None:intergenic | 50.0% | |
| AGCAGTAGTGAGGTCCTTCA+TGG | + | chr3.3:68084145-68084164 | MS.gene044229:CDS | 50.0% | |
| AGCTTTCAAGAGGCTAGACC+TGG | - | chr3.3:68083613-68083632 | None:intergenic | 50.0% | |
| AGTAGTGAGGTCCTTCATGG+TGG | + | chr3.3:68084148-68084167 | MS.gene044229:CDS | 50.0% | |
| ATACGGATCCGAACTTCACG+TGG | - | chr3.3:68081939-68081958 | None:intergenic | 50.0% | |
| ATCCGAACTTCACGTGGCAT+TGG | - | chr3.3:68081933-68081952 | None:intergenic | 50.0% | |
| ATGCTTTGCCTTCAGGGTTG+GGG | + | chr3.3:68084073-68084092 | MS.gene044229:intron | 50.0% | |
| ATGGCAGCAACAGCAAGTGA+AGG | + | chr3.3:68081727-68081746 | MS.gene044229:CDS | 50.0% | |
| ATTCTGGGCCATGAGGCAAT+TGG | + | chr3.3:68082124-68082143 | MS.gene044229:CDS | 50.0% | |
| CAACCCTGAAGGCAAAGCAT+AGG | - | chr3.3:68084073-68084092 | None:intergenic | 50.0% | |
| CACCAATGCCACGTGAAGTT+CGG | + | chr3.3:68081928-68081947 | MS.gene044229:CDS | 50.0% | |
| CCCAGAAATTCCTCTCAACG+GGG | + | chr3.3:68082683-68082702 | MS.gene044229:CDS | 50.0% | |
| CCCCGTTGAGAGGAATTTCT+GGG | - | chr3.3:68082686-68082705 | None:intergenic | 50.0% | |
| CGCGTATGCTTCTTGCAGAA+AGG | + | chr3.3:68083901-68083920 | MS.gene044229:CDS | 50.0% | |
| CGGAAAAAGCGAGATCGATG+TGG | - | chr3.3:68081980-68081999 | None:intergenic | 50.0% | |
| CTACTTCCCCTGGAAACAAG+AGG | - | chr3.3:68083680-68083699 | None:intergenic | 50.0% | |
| CTATGCTTTGCCTTCAGGGT+TGG | + | chr3.3:68084071-68084090 | MS.gene044229:intron | 50.0% | |
| CTCACAGACTTTGTCCATGC+TGG | + | chr3.3:68083563-68083582 | MS.gene044229:CDS | 50.0% | |
| CTGAGGCTTATTCTGGATCC+AGG | - | chr3.3:68084127-68084146 | None:intergenic | 50.0% | |
| CTTGGTTGCTCCACAAAGTC+TGG | - | chr3.3:68083260-68083279 | None:intergenic | 50.0% | |
| GAGATCGATGTGGCAGATAG+AGG | - | chr3.3:68081970-68081989 | None:intergenic | 50.0% | |
| GCAACAGCAAGTGAAGGAGA+AGG | + | chr3.3:68081733-68081752 | MS.gene044229:CDS | 50.0% | |
| GTAGTGAGGTCCTTCATGGT+GGG | + | chr3.3:68084149-68084168 | MS.gene044229:CDS | 50.0% | |
| GTCTTAGGACTGGACAAACC+TGG | + | chr3.3:68084106-68084125 | MS.gene044229:CDS | 50.0% | |
| TCCAAGAATTCTGGGCCATG+AGG | + | chr3.3:68082117-68082136 | MS.gene044229:CDS | 50.0% | |
| TTCTGGGCCATGAGGCAATT+GGG | + | chr3.3:68082125-68082144 | MS.gene044229:CDS | 50.0% | |
| ! | GGTTGTGGAAAGTGTAGGGA+AGG | + | chr3.3:68082410-68082429 | MS.gene044229:CDS | 50.0% |
| !!! | TCTCGCTTTTTCCGACATGC+AGG | + | chr3.3:68081986-68082005 | MS.gene044229:CDS | 50.0% |
| AAGCTTCAGCGAGTACACGG+TGG | + | chr3.3:68082632-68082651 | MS.gene044229:CDS | 55.0% | |
| ACCTGTGAGTGTGACACAGG+AGG | - | chr3.3:68083375-68083394 | None:intergenic | 55.0% | |
| CCTGTGAGTGTGACACAGGA+GGG | - | chr3.3:68083374-68083393 | None:intergenic | 55.0% | |
| GAAGGACCTCACTACTGCTG+AGG | - | chr3.3:68084144-68084163 | None:intergenic | 55.0% | |
| GCAGCACCTACCCCTACAAA+TGG | - | chr3.3:68082906-68082925 | None:intergenic | 55.0% | |
| GCCCCGTTGAGAGGAATTTC+TGG | - | chr3.3:68082687-68082706 | None:intergenic | 55.0% | |
| GCCTCATGGCCCAGAATTCT+TGG | - | chr3.3:68082121-68082140 | None:intergenic | 55.0% | |
| GCGGCAGTTGCAATAAGACC+TGG | + | chr3.3:68081870-68081889 | MS.gene044229:intron | 55.0% | |
| TCAATCACCAGTGGCTCACC+AGG | - | chr3.3:68081891-68081910 | None:intergenic | 55.0% | |
| TCCACCTGTGAGTGTGACAC+AGG | - | chr3.3:68083378-68083397 | None:intergenic | 55.0% | |
| TCCTGTGTCACACTCACAGG+TGG | + | chr3.3:68083374-68083393 | MS.gene044229:intron | 55.0% | |
| TGCTCCCACATTCTCCAGCA+TGG | - | chr3.3:68083580-68083599 | None:intergenic | 55.0% | |
| TGCTTGGAGAACAGCAGGTG+TGG | + | chr3.3:68082923-68082942 | MS.gene044229:CDS | 55.0% | |
| ! | CGAACTTCACGTGGCATTGG+TGG | - | chr3.3:68081930-68081949 | None:intergenic | 55.0% |
| ! | GTGTGTCGGTATGGCGTCAT+TGG | + | chr3.3:68083871-68083890 | MS.gene044229:CDS | 55.0% |
| !! | TTGTAGGGGTAGGTGCTGCT+TGG | + | chr3.3:68082907-68082926 | MS.gene044229:intron | 55.0% |
| AGAACAGCAGGTGTGGAGCC+AGG | + | chr3.3:68082930-68082949 | MS.gene044229:CDS | 60.0% | |
| AGAGGCTAGACCTGGCTCAC+AGG | - | chr3.3:68083605-68083624 | None:intergenic | 60.0% | |
| CCCTCCTGTGTCACACTCAC+AGG | + | chr3.3:68083371-68083390 | MS.gene044229:intron | 60.0% | |
| GAACAGCAGGTGTGGAGCCA+GGG | + | chr3.3:68082931-68082950 | MS.gene044229:CDS | 60.0% | |
| GCTGAGGGAGCCAGACTTTG+TGG | + | chr3.3:68083247-68083266 | MS.gene044229:CDS | 60.0% | |
| GGGGCGTGCCTTCTAAGTTG+TGG | + | chr3.3:68082702-68082721 | MS.gene044229:CDS | 60.0% | |
| GTGAGTGTGACACAGGAGGG+TGG | - | chr3.3:68083371-68083390 | None:intergenic | 60.0% | |
| TGGGAGCAAACCTGTGAGCC+AGG | + | chr3.3:68083592-68083611 | MS.gene044229:CDS | 60.0% | |
| ! | TCTGGCTCCCTCAGCAACCT+AGG | - | chr3.3:68083242-68083261 | None:intergenic | 60.0% |
| !! | GGTGCTGCTTGGAGAACAGC+AGG | + | chr3.3:68082918-68082937 | MS.gene044229:CDS | 60.0% |
| ! | AGAAGGCACGCCCCGTTGAG+AGG | - | chr3.3:68082696-68082715 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 68081727 | 68084653 | 68081727 | ID=MS.gene044229 |
| chr3.3 | mRNA | 68081727 | 68084653 | 68081727 | ID=MS.gene044229.t1;Parent=MS.gene044229 |
| chr3.3 | exon | 68081727 | 68081775 | 68081727 | ID=MS.gene044229.t1.exon1;Parent=MS.gene044229.t1 |
| chr3.3 | CDS | 68081727 | 68081775 | 68081727 | ID=cds.MS.gene044229.t1;Parent=MS.gene044229.t1 |
| chr3.3 | exon | 68081871 | 68082007 | 68081871 | ID=MS.gene044229.t1.exon2;Parent=MS.gene044229.t1 |
| chr3.3 | CDS | 68081871 | 68082007 | 68081871 | ID=cds.MS.gene044229.t1;Parent=MS.gene044229.t1 |
| chr3.3 | exon | 68082100 | 68082146 | 68082100 | ID=MS.gene044229.t1.exon3;Parent=MS.gene044229.t1 |
| chr3.3 | CDS | 68082100 | 68082146 | 68082100 | ID=cds.MS.gene044229.t1;Parent=MS.gene044229.t1 |
| chr3.3 | exon | 68082410 | 68082735 | 68082410 | ID=MS.gene044229.t1.exon4;Parent=MS.gene044229.t1 |
| chr3.3 | CDS | 68082410 | 68082735 | 68082410 | ID=cds.MS.gene044229.t1;Parent=MS.gene044229.t1 |
| chr3.3 | exon | 68082913 | 68082959 | 68082913 | ID=MS.gene044229.t1.exon5;Parent=MS.gene044229.t1 |
| chr3.3 | CDS | 68082913 | 68082959 | 68082913 | ID=cds.MS.gene044229.t1;Parent=MS.gene044229.t1 |
| chr3.3 | exon | 68083244 | 68083319 | 68083244 | ID=MS.gene044229.t1.exon6;Parent=MS.gene044229.t1 |
| chr3.3 | CDS | 68083244 | 68083319 | 68083244 | ID=cds.MS.gene044229.t1;Parent=MS.gene044229.t1 |
| chr3.3 | exon | 68083549 | 68083613 | 68083549 | ID=MS.gene044229.t1.exon7;Parent=MS.gene044229.t1 |
| chr3.3 | CDS | 68083549 | 68083613 | 68083549 | ID=cds.MS.gene044229.t1;Parent=MS.gene044229.t1 |
| chr3.3 | exon | 68083827 | 68083922 | 68083827 | ID=MS.gene044229.t1.exon8;Parent=MS.gene044229.t1 |
| chr3.3 | CDS | 68083827 | 68083922 | 68083827 | ID=cds.MS.gene044229.t1;Parent=MS.gene044229.t1 |
| chr3.3 | exon | 68084088 | 68084252 | 68084088 | ID=MS.gene044229.t1.exon9;Parent=MS.gene044229.t1 |
| chr3.3 | CDS | 68084088 | 68084252 | 68084088 | ID=cds.MS.gene044229.t1;Parent=MS.gene044229.t1 |
| chr3.3 | exon | 68084537 | 68084653 | 68084537 | ID=MS.gene044229.t1.exon10;Parent=MS.gene044229.t1 |
| chr3.3 | CDS | 68084537 | 68084653 | 68084537 | ID=cds.MS.gene044229.t1;Parent=MS.gene044229.t1 |
| Gene Sequence |
| Protein sequence |
