Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030545.t1 | XP_003630404.1 | 97.9 | 428 | 6 | 2 | 1 | 428 | 1 | 425 | 1.50E-238 | 835.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030545.t1 | A4YGN0 | 43.9 | 369 | 197 | 5 | 57 | 425 | 1 | 359 | 7.7e-79 | 295.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030545.t1 | G7LFT6 | 97.9 | 428 | 6 | 2 | 1 | 428 | 1 | 425 | 1.1e-238 | 835.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030545 | MS.gene84205 | PPI |
| MS.gene030545 | MS.gene37836 | PPI |
| MS.gene030545 | MS.gene77335 | PPI |
| MS.gene030545 | MS.gene044229 | PPI |
| MS.gene030545 | MS.gene78435 | PPI |
| MS.gene030545 | MS.gene78434 | PPI |
| MS.gene030545 | MS.gene02651 | PPI |
| MS.gene030545 | MS.gene81956 | PPI |
| MS.gene030545 | MS.gene069804 | PPI |
| MS.gene030545 | MS.gene044228 | PPI |
| MS.gene030545 | MS.gene81954 | PPI |
| MS.gene030545 | MS.gene042841 | PPI |
| MS.gene030545 | MS.gene84204 | PPI |
| MS.gene030545 | MS.gene013678 | PPI |
| MS.gene030545 | MS.gene013671 | PPI |
| MS.gene030545 | MS.gene79768 | PPI |
| MS.gene016853 | MS.gene030545 | PPI |
| MS.gene074415 | MS.gene030545 | PPI |
| MS.gene030545 | MS.gene02488 | PPI |
| MS.gene030545 | MS.gene02654 | PPI |
| MS.gene030545 | MS.gene33522 | PPI |
| MS.gene030545 | MS.gene038047 | PPI |
| MS.gene030545 | MS.gene02655 | PPI |
| MS.gene030545 | MS.gene39827 | PPI |
| MS.gene030545 | MS.gene81957 | PPI |
| MS.gene030545 | MS.gene83309 | PPI |
| MS.gene030545 | MS.gene77336 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030545.t1 | MTR_8g095220 | 97.897 | 428 | 6 | 2 | 1 | 428 | 1 | 425 | 0.0 | 852 |
| MS.gene030545.t1 | MTR_8g095220 | 97.078 | 308 | 6 | 2 | 1 | 308 | 1 | 305 | 0.0 | 613 |
| MS.gene030545.t1 | MTR_7g099040 | 31.622 | 370 | 233 | 10 | 58 | 418 | 13 | 371 | 5.82e-46 | 163 |
| MS.gene030545.t1 | MTR_1g069430 | 31.063 | 367 | 237 | 10 | 58 | 417 | 11 | 368 | 6.12e-46 | 163 |
| MS.gene030545.t1 | MTR_3g089977 | 31.579 | 380 | 237 | 15 | 58 | 427 | 12 | 378 | 4.07e-45 | 161 |
| MS.gene030545.t1 | MTR_3g089940 | 31.316 | 380 | 238 | 15 | 58 | 427 | 12 | 378 | 1.54e-44 | 159 |
| MS.gene030545.t1 | MTR_3g089940 | 31.053 | 380 | 239 | 15 | 58 | 427 | 12 | 378 | 5.07e-44 | 158 |
| MS.gene030545.t1 | MTR_3g089970 | 30.952 | 378 | 238 | 15 | 60 | 427 | 15 | 379 | 9.91e-43 | 154 |
| MS.gene030545.t1 | MTR_3g089940 | 31.686 | 344 | 213 | 14 | 58 | 391 | 12 | 343 | 1.56e-40 | 148 |
| MS.gene030545.t1 | MTR_3g089940 | 31.395 | 344 | 214 | 14 | 58 | 391 | 12 | 343 | 5.56e-40 | 146 |
| MS.gene030545.t1 | MTR_5g087710 | 30.585 | 376 | 244 | 10 | 58 | 425 | 21 | 387 | 3.79e-38 | 142 |
| MS.gene030545.t1 | MTR_0001s0660 | 29.630 | 378 | 245 | 9 | 58 | 428 | 11 | 374 | 1.89e-36 | 139 |
| MS.gene030545.t1 | MTR_6g068930 | 29.600 | 375 | 247 | 11 | 58 | 427 | 13 | 375 | 8.94e-35 | 133 |
| MS.gene030545.t1 | MTR_7g068330 | 31.989 | 372 | 232 | 12 | 58 | 418 | 16 | 377 | 5.47e-34 | 131 |
| MS.gene030545.t1 | MTR_3g099460 | 27.979 | 386 | 261 | 10 | 51 | 427 | 12 | 389 | 1.30e-33 | 130 |
| MS.gene030545.t1 | MTR_5g045710 | 28.415 | 366 | 246 | 9 | 67 | 427 | 20 | 374 | 7.75e-33 | 127 |
| MS.gene030545.t1 | MTR_7g068320 | 31.551 | 374 | 232 | 15 | 58 | 418 | 23 | 385 | 4.48e-32 | 125 |
| MS.gene030545.t1 | MTR_3g099460 | 28.307 | 378 | 254 | 10 | 59 | 427 | 13 | 382 | 8.03e-32 | 125 |
| MS.gene030545.t1 | MTR_3g079180 | 28.042 | 378 | 254 | 11 | 50 | 418 | 8 | 376 | 3.08e-31 | 123 |
| MS.gene030545.t1 | MTR_6g465010 | 27.247 | 356 | 212 | 11 | 69 | 412 | 11 | 331 | 4.62e-28 | 114 |
| MS.gene030545.t1 | MTR_6g466320 | 27.247 | 356 | 212 | 11 | 69 | 412 | 27 | 347 | 4.82e-28 | 114 |
| MS.gene030545.t1 | MTR_6g465010 | 27.247 | 356 | 212 | 11 | 69 | 412 | 27 | 347 | 4.82e-28 | 114 |
| MS.gene030545.t1 | MTR_3g099460 | 28.136 | 295 | 198 | 7 | 51 | 338 | 12 | 299 | 5.29e-25 | 105 |
| MS.gene030545.t1 | MTR_5g045710 | 29.252 | 294 | 197 | 8 | 139 | 427 | 4 | 291 | 1.21e-24 | 103 |
| MS.gene030545.t1 | MTR_3g099460 | 27.469 | 324 | 221 | 8 | 110 | 427 | 11 | 326 | 1.33e-24 | 103 |
| MS.gene030545.t1 | MTR_3g099460 | 28.571 | 287 | 191 | 7 | 59 | 338 | 13 | 292 | 4.00e-23 | 99.8 |
| MS.gene030545.t1 | MTR_3g079170 | 31.330 | 233 | 150 | 8 | 194 | 419 | 54 | 283 | 2.87e-21 | 93.6 |
| MS.gene030545.t1 | MTR_4g115300 | 27.628 | 333 | 200 | 10 | 62 | 380 | 7 | 312 | 7.34e-20 | 90.9 |
| MS.gene030545.t1 | MTR_1g107425 | 25.538 | 372 | 241 | 10 | 59 | 427 | 13 | 351 | 3.65e-19 | 89.0 |
| MS.gene030545.t1 | MTR_5g031190 | 26.786 | 280 | 175 | 7 | 71 | 346 | 25 | 278 | 8.52e-19 | 87.8 |
| MS.gene030545.t1 | MTR_5g031305 | 28.188 | 298 | 180 | 10 | 54 | 346 | 11 | 279 | 1.86e-18 | 86.7 |
| MS.gene030545.t1 | MTR_8g068190 | 27.857 | 280 | 172 | 8 | 71 | 346 | 25 | 278 | 3.14e-18 | 85.9 |
| MS.gene030545.t1 | MTR_5g031360 | 26.849 | 365 | 223 | 14 | 71 | 427 | 27 | 355 | 4.35e-18 | 85.5 |
| MS.gene030545.t1 | MTR_5g031250 | 27.734 | 256 | 151 | 7 | 62 | 304 | 7 | 241 | 1.55e-17 | 82.4 |
| MS.gene030545.t1 | MTR_5g031430 | 25.862 | 348 | 222 | 10 | 83 | 427 | 39 | 353 | 1.67e-17 | 84.0 |
| MS.gene030545.t1 | MTR_5g031250 | 26.174 | 298 | 181 | 8 | 62 | 346 | 7 | 278 | 2.21e-17 | 83.6 |
| MS.gene030545.t1 | MTR_8g092630 | 29.825 | 228 | 132 | 8 | 70 | 292 | 81 | 285 | 2.54e-17 | 84.0 |
| MS.gene030545.t1 | MTR_5g031180 | 26.429 | 280 | 176 | 7 | 71 | 346 | 25 | 278 | 2.17e-16 | 80.5 |
| MS.gene030545.t1 | MTR_5g031310 | 26.421 | 299 | 181 | 8 | 61 | 346 | 7 | 279 | 2.52e-16 | 80.5 |
| MS.gene030545.t1 | MTR_5g031230 | 26.690 | 281 | 176 | 7 | 71 | 347 | 25 | 279 | 3.85e-16 | 79.7 |
| MS.gene030545.t1 | MTR_5g031300 | 26.842 | 380 | 236 | 13 | 54 | 427 | 11 | 354 | 3.88e-16 | 79.7 |
| MS.gene030545.t1 | MTR_5g031210 | 27.961 | 304 | 178 | 10 | 58 | 347 | 3 | 279 | 7.43e-16 | 79.0 |
| MS.gene030545.t1 | MTR_1g107425 | 29.098 | 244 | 148 | 6 | 59 | 299 | 13 | 234 | 2.14e-15 | 77.0 |
| MS.gene030545.t1 | MTR_2g009810 | 23.611 | 360 | 242 | 9 | 6 | 359 | 8 | 340 | 1.04e-14 | 75.9 |
| MS.gene030545.t1 | MTR_1g025950 | 25.373 | 268 | 169 | 8 | 83 | 346 | 38 | 278 | 5.94e-14 | 73.2 |
| MS.gene030545.t1 | MTR_5g031390 | 30.612 | 196 | 112 | 7 | 91 | 283 | 47 | 221 | 2.12e-13 | 71.6 |
| MS.gene030545.t1 | MTR_4g050760 | 24.036 | 337 | 192 | 10 | 57 | 388 | 1 | 278 | 9.06e-13 | 69.3 |
| MS.gene030545.t1 | MTR_2g012380 | 24.036 | 337 | 192 | 10 | 57 | 388 | 1 | 278 | 9.06e-13 | 69.3 |
| MS.gene030545.t1 | MTR_2g012380 | 23.824 | 319 | 180 | 9 | 57 | 370 | 1 | 261 | 1.01e-12 | 68.6 |
| MS.gene030545.t1 | MTR_4g029500 | 29.237 | 236 | 154 | 6 | 198 | 425 | 142 | 372 | 2.35e-12 | 68.6 |
| MS.gene030545.t1 | MTR_2g012420 | 27.604 | 192 | 134 | 5 | 199 | 389 | 21 | 208 | 1.72e-11 | 64.7 |
| MS.gene030545.t1 | MTR_4g050710 | 27.604 | 192 | 134 | 5 | 199 | 389 | 15 | 202 | 2.33e-11 | 63.9 |
| MS.gene030545.t1 | MTR_2g012420 | 27.749 | 191 | 133 | 5 | 199 | 388 | 92 | 278 | 9.26e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030545.t1 | AT5G63620 | 74.246 | 431 | 102 | 3 | 1 | 428 | 3 | 427 | 0.0 | 660 |
| MS.gene030545.t1 | AT5G63620 | 73.782 | 431 | 104 | 3 | 1 | 428 | 3 | 427 | 0.0 | 656 |
| MS.gene030545.t1 | AT5G63620 | 71.935 | 310 | 78 | 3 | 1 | 307 | 3 | 306 | 1.27e-162 | 461 |
| MS.gene030545.t1 | AT5G43940 | 30.851 | 376 | 243 | 11 | 58 | 426 | 11 | 376 | 1.32e-45 | 162 |
| MS.gene030545.t1 | AT5G43940 | 31.016 | 374 | 241 | 11 | 60 | 426 | 25 | 388 | 3.62e-45 | 161 |
| MS.gene030545.t1 | AT1G77120 | 30.871 | 379 | 241 | 13 | 58 | 427 | 11 | 377 | 7.63e-44 | 157 |
| MS.gene030545.t1 | AT1G64710 | 29.076 | 368 | 248 | 7 | 58 | 418 | 11 | 372 | 2.15e-43 | 156 |
| MS.gene030545.t1 | AT4G22110 | 33.069 | 378 | 232 | 11 | 52 | 418 | 12 | 379 | 1.54e-42 | 154 |
| MS.gene030545.t1 | AT4G22110 | 33.069 | 378 | 232 | 11 | 52 | 418 | 12 | 379 | 1.54e-42 | 154 |
| MS.gene030545.t1 | AT1G64710 | 29.014 | 355 | 239 | 7 | 71 | 418 | 1 | 349 | 1.56e-41 | 150 |
| MS.gene030545.t1 | AT5G42250 | 29.067 | 375 | 251 | 9 | 54 | 420 | 16 | 383 | 1.30e-39 | 146 |
| MS.gene030545.t1 | AT1G22430 | 30.952 | 378 | 240 | 11 | 52 | 418 | 11 | 378 | 1.83e-38 | 143 |
| MS.gene030545.t1 | AT1G22430 | 30.952 | 378 | 240 | 11 | 52 | 418 | 11 | 378 | 1.83e-38 | 143 |
| MS.gene030545.t1 | AT5G24760 | 30.133 | 375 | 241 | 12 | 60 | 427 | 19 | 379 | 1.31e-37 | 140 |
| MS.gene030545.t1 | AT1G32780 | 29.351 | 385 | 249 | 12 | 58 | 427 | 12 | 388 | 2.45e-37 | 140 |
| MS.gene030545.t1 | AT5G24760 | 29.945 | 364 | 234 | 12 | 71 | 427 | 1 | 350 | 1.20e-35 | 135 |
| MS.gene030545.t1 | AT5G24760 | 29.945 | 364 | 234 | 12 | 71 | 427 | 1 | 350 | 1.20e-35 | 135 |
| MS.gene030545.t1 | AT1G22440 | 29.255 | 376 | 247 | 10 | 52 | 417 | 9 | 375 | 1.73e-35 | 135 |
| MS.gene030545.t1 | AT1G64710 | 29.210 | 291 | 200 | 5 | 133 | 418 | 14 | 303 | 1.35e-34 | 131 |
| MS.gene030545.t1 | AT4G22110 | 34.400 | 250 | 155 | 5 | 52 | 298 | 12 | 255 | 2.02e-29 | 116 |
| MS.gene030545.t1 | AT1G22430 | 31.541 | 279 | 178 | 7 | 52 | 324 | 11 | 282 | 2.67e-28 | 114 |
| MS.gene030545.t1 | AT1G22430 | 31.325 | 249 | 162 | 5 | 52 | 297 | 11 | 253 | 1.40e-26 | 108 |
| MS.gene030545.t1 | AT1G22430 | 31.325 | 249 | 162 | 5 | 52 | 297 | 11 | 253 | 1.40e-26 | 108 |
| MS.gene030545.t1 | AT5G51970 | 25.543 | 368 | 231 | 11 | 69 | 428 | 29 | 361 | 5.71e-26 | 108 |
| MS.gene030545.t1 | AT5G51970 | 25.543 | 368 | 231 | 11 | 69 | 428 | 29 | 361 | 5.71e-26 | 108 |
| MS.gene030545.t1 | AT5G24760 | 31.418 | 261 | 167 | 8 | 174 | 427 | 10 | 265 | 6.71e-25 | 103 |
| MS.gene030545.t1 | AT4G37970 | 25.905 | 359 | 228 | 10 | 74 | 427 | 29 | 354 | 5.50e-18 | 85.5 |
| MS.gene030545.t1 | AT4G37970 | 27.113 | 284 | 175 | 8 | 71 | 349 | 26 | 282 | 9.88e-18 | 83.6 |
| MS.gene030545.t1 | AT4G37990 | 26.433 | 314 | 195 | 10 | 71 | 378 | 21 | 304 | 2.50e-17 | 83.6 |
| MS.gene030545.t1 | AT4G37970 | 29.583 | 240 | 142 | 7 | 71 | 305 | 26 | 243 | 3.94e-17 | 81.3 |
| MS.gene030545.t1 | AT4G37970 | 29.583 | 240 | 142 | 7 | 71 | 305 | 26 | 243 | 4.55e-17 | 81.3 |
| MS.gene030545.t1 | AT2G21730 | 27.719 | 285 | 174 | 10 | 71 | 349 | 19 | 277 | 1.23e-16 | 81.6 |
| MS.gene030545.t1 | AT5G61510 | 26.333 | 300 | 162 | 7 | 69 | 366 | 41 | 283 | 1.07e-15 | 78.6 |
| MS.gene030545.t1 | AT2G21890 | 28.070 | 285 | 172 | 11 | 71 | 349 | 19 | 276 | 1.26e-15 | 78.6 |
| MS.gene030545.t1 | AT5G61510 | 26.333 | 300 | 162 | 7 | 69 | 366 | 98 | 340 | 1.71e-15 | 78.2 |
| MS.gene030545.t1 | AT1G72680 | 27.536 | 276 | 170 | 8 | 91 | 363 | 45 | 293 | 2.02e-14 | 74.7 |
| MS.gene030545.t1 | AT4G39330 | 27.682 | 289 | 177 | 11 | 66 | 349 | 20 | 281 | 1.31e-13 | 71.6 |
| MS.gene030545.t1 | AT4G39330 | 27.682 | 289 | 177 | 11 | 66 | 349 | 20 | 281 | 1.44e-13 | 72.0 |
| MS.gene030545.t1 | AT4G37980 | 25.962 | 312 | 199 | 11 | 71 | 378 | 21 | 304 | 2.15e-13 | 71.6 |
| MS.gene030545.t1 | AT3G19450 | 24.734 | 376 | 239 | 12 | 59 | 427 | 13 | 351 | 2.97e-13 | 71.2 |
| MS.gene030545.t1 | AT4G37980 | 25.714 | 280 | 178 | 9 | 71 | 346 | 21 | 274 | 6.90e-13 | 69.3 |
| MS.gene030545.t1 | AT4G21580 | 28.652 | 178 | 123 | 4 | 195 | 371 | 55 | 229 | 9.96e-13 | 68.9 |
| MS.gene030545.t1 | AT4G21580 | 27.000 | 200 | 141 | 5 | 195 | 392 | 88 | 284 | 1.50e-12 | 68.6 |
Find 102 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAACCTTTCTATGGTTT+TGG | 0.175052 | 4.2:-7998531 | None:intergenic |
| GGTGATACTGTTGCTGTTAT+TGG | 0.219498 | 4.2:+7999354 | MS.gene030545:CDS |
| CTGGCACAAGCTGGTTCTTT+AGG | 0.246946 | 4.2:+8000031 | MS.gene030545:CDS |
| ACCGATATACATGTATAGTA+TGG | 0.286726 | 4.2:+7999188 | MS.gene030545:CDS |
| TGTGAACAGATAAAAGTTAT+TGG | 0.299278 | 4.2:+8000608 | MS.gene030545:intron |
| TCGAGTTTCACCATCGTATA+AGG | 0.300970 | 4.2:-7998913 | None:intergenic |
| ACTGTTGCTGTTATTGGAAC+TGG | 0.304388 | 4.2:+7999360 | MS.gene030545:CDS |
| GATGAGAAGTTCACCAGCTT+TGG | 0.318763 | 4.2:-7998164 | None:intergenic |
| TATACCGAGTCTGCAATTCT+AGG | 0.324055 | 4.2:+7999276 | MS.gene030545:CDS |
| TCGGTATATGGCATTGAGTT+TGG | 0.337585 | 4.2:-7999261 | None:intergenic |
| CCAATTGGATCTCGAGTTGT+TGG | 0.344296 | 4.2:+7998713 | MS.gene030545:CDS |
| TTCAATGGTGAGAGGTTTGT+TGG | 0.348495 | 4.2:-7998122 | None:intergenic |
| AACTTCACGCAGGAAATTAC+TGG | 0.359885 | 4.2:+7999905 | MS.gene030545:intron |
| GATGTTGCTGTTGAAGCCTT+AGG | 0.362906 | 4.2:+7999941 | MS.gene030545:CDS |
| TTAATTAGATTGGCAGAAAC+AGG | 0.368222 | 4.2:+8000668 | MS.gene030545:CDS |
| ATAAAAGTTATTGGCTCATA+TGG | 0.373792 | 4.2:+8000617 | MS.gene030545:CDS |
| ATGAGAAGTTCACCAGCTTT+GGG | 0.377738 | 4.2:-7998163 | None:intergenic |
| TATAATTGCTGTTGATGTTC+AGG | 0.379502 | 4.2:+7999652 | MS.gene030545:CDS |
| GGAGTCAGGCAAAGCATTCC+AGG | 0.386069 | 4.2:+8000736 | MS.gene030545:CDS |
| TCTTGAAAAGGTTGTCTTGT+TGG | 0.386179 | 4.2:+7997972 | MS.gene030545:CDS |
| TCTTCCAAAGTTAATTAGAT+TGG | 0.387780 | 4.2:+8000658 | MS.gene030545:CDS |
| CTGCAGATAGCTAGAGCATT+TGG | 0.389366 | 4.2:+7999620 | MS.gene030545:CDS |
| AGAATTGCAGACTCGGTATA+TGG | 0.391325 | 4.2:-7999273 | None:intergenic |
| GTTGTGGGCCATGAGATTAC+TGG | 0.411881 | 4.2:+7998476 | MS.gene030545:CDS |
| GATTGTTTCAGGCTTCCAAT+TGG | 0.413947 | 4.2:+7998698 | MS.gene030545:intron |
| CTGTTGCTGTTATTGGAACT+GGG | 0.417859 | 4.2:+7999361 | MS.gene030545:CDS |
| CCCATACTATACATGTATAT+CGG | 0.418017 | 4.2:-7999189 | None:intergenic |
| TCTGCCAATCTAATTAACTT+TGG | 0.433236 | 4.2:-8000662 | None:intergenic |
| GCTCATATGGAGGGAGGGCT+AGG | 0.438318 | 4.2:+8000630 | MS.gene030545:CDS |
| GGAGGAAAAGCAGTGATGAT+TGG | 0.449002 | 4.2:+8000007 | MS.gene030545:CDS |
| TGCAACTCACACAATAAATT+CGG | 0.452277 | 4.2:+7999706 | MS.gene030545:CDS |
| TTTGCTTATAACCGCGCAAA+AGG | 0.453633 | 4.2:+7998888 | MS.gene030545:CDS |
| ACCAACAGCTTCTGTGTGAA+TGG | 0.454170 | 4.2:-7998053 | None:intergenic |
| ACAGAAGCTGTTGGTGGTGT+TGG | 0.457231 | 4.2:+7998061 | MS.gene030545:CDS |
| CGACTGTTTCTTCGAGGAAG+TGG | 0.460944 | 4.2:+7998933 | MS.gene030545:CDS |
| GAAACAGGTATCTTCGACCT+TGG | 0.461531 | 4.2:+8000683 | MS.gene030545:CDS |
| TCAGCAACAACTTCTTGAAA+AGG | 0.464826 | 4.2:+7997960 | MS.gene030545:CDS |
| TCAATGGTGAGAGGTTTGTT+GGG | 0.468644 | 4.2:-7998121 | None:intergenic |
| AGCTAGAGCATTTGGTGCCT+CGG | 0.473664 | 4.2:+7999628 | MS.gene030545:CDS |
| CCAACAACTCGAGATCCAAT+TGG | 0.477791 | 4.2:-7998713 | None:intergenic |
| CATATTCCTCGTCCCAAAGC+TGG | 0.483522 | 4.2:+7998151 | MS.gene030545:CDS |
| AATACCGCCAATGCATTTGC+TGG | 0.484950 | 4.2:-7999237 | None:intergenic |
| AGTTCACCAGCTTTGGGACG+AGG | 0.494387 | 4.2:-7998157 | None:intergenic |
| CATGCAGCCGAAGTGCGCCC+TGG | 0.499244 | 4.2:+7999333 | MS.gene030545:CDS |
| ATGTTGCTGTTGAAGCCTTA+GGG | 0.501604 | 4.2:+7999942 | MS.gene030545:CDS |
| AGCTGGTTCTTTAGGAGAGG+TGG | 0.503154 | 4.2:+8000039 | MS.gene030545:CDS |
| CAATGTTACCTTTGAACAGT+AGG | 0.517503 | 4.2:-7998765 | None:intergenic |
| AGGAATATGAAATTCTTCAA+TGG | 0.521033 | 4.2:-7998137 | None:intergenic |
| TTCTTGTAACAGCATGGCCA+AGG | 0.522537 | 4.2:-8000700 | None:intergenic |
| AAATAGACTTGTTCGCAGAA+AGG | 0.523418 | 4.2:+8000066 | MS.gene030545:CDS |
| GAAACTCGACTGTTTCTTCG+AGG | 0.525121 | 4.2:+7998927 | MS.gene030545:CDS |
| CAGGAAATTACTGGTGGAAA+GGG | 0.526933 | 4.2:+7999914 | MS.gene030545:intron |
| ACAACACAAGGACTTGAAAA+CGG | 0.537012 | 4.2:-7998458 | None:intergenic |
| GCAGGAAATTACTGGTGGAA+AGG | 0.554988 | 4.2:+7999913 | MS.gene030545:intron |
| CCGATATACATGTATAGTAT+GGG | 0.556704 | 4.2:+7999189 | MS.gene030545:CDS |
| ACAGCACCACGCATGTAAGA+TGG | 0.560649 | 4.2:-7998088 | None:intergenic |
| GCAAAAGGAACCTTATACGA+TGG | 0.560670 | 4.2:+7998903 | MS.gene030545:CDS |
| CTGATTCCAAAACCATAGAA+AGG | 0.561548 | 4.2:+7998525 | MS.gene030545:CDS |
| CTAGAGAAAGCAAAGACACT+TGG | 0.562324 | 4.2:+7999683 | MS.gene030545:CDS |
| ATCTCATGGCCCACAACACA+AGG | 0.562994 | 4.2:-7998470 | None:intergenic |
| TCTGATCTTCATGTCATGAA+AGG | 0.564745 | 4.2:+7998428 | MS.gene030545:CDS |
| AAATGTCTGTGGTCTCCCTA+AGG | 0.567546 | 4.2:-7999957 | None:intergenic |
| TGCACACAAAGTGTGAAAGA+TGG | 0.567900 | 4.2:+7999986 | MS.gene030545:CDS |
| TCCATTCACACAGAAGCTGT+TGG | 0.570592 | 4.2:+7998052 | MS.gene030545:CDS |
| AAAGTTATTGGCTCATATGG+AGG | 0.577253 | 4.2:+8000620 | MS.gene030545:CDS |
| TGAAATTCTTCAATGGTGAG+AGG | 0.583588 | 4.2:-7998130 | None:intergenic |
| TGTTGAAGCTGATGCATGTA+CGG | 0.583923 | 4.2:+7998027 | MS.gene030545:CDS |
| TCACACAATAAATTCGGCTA+AGG | 0.585756 | 4.2:+7999712 | MS.gene030545:CDS |
| ATTCACACAGAAGCTGTTGG+TGG | 0.585825 | 4.2:+7998055 | MS.gene030545:CDS |
| AGTATCACCAGGGCGCACTT+CGG | 0.593810 | 4.2:-7999340 | None:intergenic |
| CAACTTCACCAGTAATCTCA+TGG | 0.594487 | 4.2:-7998484 | None:intergenic |
| ACAAGCTGGTTCTTTAGGAG+AGG | 0.597825 | 4.2:+8000036 | MS.gene030545:CDS |
| TGTTGCTGTTATTGGAACTG+GGG | 0.602671 | 4.2:+7999362 | MS.gene030545:CDS |
| CAACTGTTCCTACTGTTCAA+AGG | 0.602922 | 4.2:+7998757 | MS.gene030545:CDS |
| ACATCCTAGAATTGCAGACT+CGG | 0.607209 | 4.2:-7999280 | None:intergenic |
| AAGTTATTGGCTCATATGGA+GGG | 0.607746 | 4.2:+8000621 | MS.gene030545:CDS |
| GGAGCCTTCATTATGCCTTG+CGG | 0.609397 | 4.2:+7998734 | MS.gene030545:CDS |
| TGGCATCTGCACTAGTTCGT+AGG | 0.610288 | 4.2:+7997930 | MS.gene030545:CDS |
| TGTGCCAGCAAATGCATTGG+CGG | 0.610816 | 4.2:+7999233 | MS.gene030545:CDS |
| ATGATTGGACTGGCACAAGC+TGG | 0.611907 | 4.2:+8000022 | MS.gene030545:CDS |
| GTTGCTGTTATTGGAACTGG+GGG | 0.615280 | 4.2:+7999363 | MS.gene030545:CDS |
| ATATACATGTATAGTATGGG+AGG | 0.616452 | 4.2:+7999192 | MS.gene030545:CDS |
| ATAACAGCAACAGTATCACC+AGG | 0.620053 | 4.2:-7999351 | None:intergenic |
| AAGCTTCGCACAGATCATCA+TGG | 0.622065 | 4.2:-7998863 | None:intergenic |
| GTTGCCGCAAGGCATAATGA+AGG | 0.623436 | 4.2:-7998738 | None:intergenic |
| AAAAGCAGTGATGATTGGAC+TGG | 0.624735 | 4.2:+8000012 | MS.gene030545:CDS |
| GTGCACTGAGCAAATGTCTG+TGG | 0.625723 | 4.2:-7999968 | None:intergenic |
| CAGTAGGAACAGTTGCCGCA+AGG | 0.626718 | 4.2:-7998749 | None:intergenic |
| ACTGGTGAAGTTGTTGAACA+TGG | 0.627651 | 4.2:+7998494 | MS.gene030545:CDS |
| GAACTTCTCATCAAAACCAA+GGG | 0.629940 | 4.2:+7998175 | MS.gene030545:CDS |
| TTCACGCAGGAAATTACTGG+TGG | 0.641213 | 4.2:+7999908 | MS.gene030545:intron |
| TATACATGTATAGTATGGGA+GGG | 0.642941 | 4.2:+7999193 | MS.gene030545:CDS |
| TGAACTTCTCATCAAAACCA+AGG | 0.647879 | 4.2:+7998174 | MS.gene030545:CDS |
| TATTGGCTCATATGGAGGGA+GGG | 0.648186 | 4.2:+8000625 | MS.gene030545:CDS |
| TTATTGGCTCATATGGAGGG+AGG | 0.648294 | 4.2:+8000624 | MS.gene030545:CDS |
| ATCAACAGCAATTATATCCG+AGG | 0.648309 | 4.2:-7999645 | None:intergenic |
| TGTTGTGCCAGCAAATGCAT+TGG | 0.658264 | 4.2:+7999230 | MS.gene030545:CDS |
| GGATTGCCATCTTACATGCG+TGG | 0.668555 | 4.2:+7998082 | MS.gene030545:CDS |
| GCATTCCAGGATCTCAACGA+AGG | 0.671434 | 4.2:+8000749 | MS.gene030545:CDS |
| ACACAAAGTGTGAAAGATGG+AGG | 0.689218 | 4.2:+7999989 | MS.gene030545:CDS |
| TCATGACATGAAGATCAGAG+TGG | 0.751085 | 4.2:-7998424 | None:intergenic |
| TAACAGCAACAGTATCACCA+GGG | 0.751466 | 4.2:-7999350 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATTGGCAAATTTAT+AGG | + | chr4.2:7999162-7999181 | MS.gene030545:intron | 15.0% |
| !! | TAGAGAAAACAATTAAATAA+AGG | - | chr4.2:7999886-7999905 | None:intergenic | 15.0% |
| !!! | ATTTTTGATATTGTTATGAT+TGG | + | chr4.2:7998339-7998358 | MS.gene030545:intron | 15.0% |
| !! | AAAAAACTTTAACCTTTCTA+TGG | - | chr4.2:7998540-7998559 | None:intergenic | 20.0% |
| !! | ATAAATTAAGCTTGTCTATA+TGG | - | chr4.2:7999031-7999050 | None:intergenic | 20.0% |
| !! | ATTGGAATACTGAAAATAAT+TGG | + | chr4.2:7999150-7999169 | MS.gene030545:intron | 20.0% |
| !! | GATTAAATTGTTCATATCAA+GGG | + | chr4.2:8000380-8000399 | MS.gene030545:intron | 20.0% |
| !! | TAAATTAAGCTTGTCTATAT+GGG | - | chr4.2:7999030-7999049 | None:intergenic | 20.0% |
| !! | TTTCAGTATTCCAATTATAA+AGG | - | chr4.2:7999145-7999164 | None:intergenic | 20.0% |
| !!! | ACATACAAATTTAATTTGCT+TGG | - | chr4.2:8000591-8000610 | None:intergenic | 20.0% |
| !!! | ATATACAAGTATCTTTTCAA+TGG | - | chr4.2:7999744-7999763 | None:intergenic | 20.0% |
| !!! | TATACAAGTATCTTTTCAAT+GGG | - | chr4.2:7999743-7999762 | None:intergenic | 20.0% |
| ! | AAATGATTCAAGATAACCTT+TGG | + | chr4.2:8000357-8000376 | MS.gene030545:intron | 25.0% |
| ! | AATGATTCAAGATAACCTTT+GGG | + | chr4.2:8000358-8000377 | MS.gene030545:intron | 25.0% |
| ! | AGGAATATGAAATTCTTCAA+TGG | - | chr4.2:7998140-7998159 | None:intergenic | 25.0% |
| ! | ATGAATTTGTCAAATAAGTG+AGG | - | chr4.2:8000568-8000587 | None:intergenic | 25.0% |
| ! | GAAACAGCAAAAATAGAAAA+AGG | - | chr4.2:7999464-7999483 | None:intergenic | 25.0% |
| ! | GGATTAAATTGTTCATATCA+AGG | + | chr4.2:8000379-8000398 | MS.gene030545:intron | 25.0% |
| ! | TAACTAAATCAATTGTCAAG+TGG | + | chr4.2:7999399-7999418 | MS.gene030545:intron | 25.0% |
| ! | TACAATCATTTCACATGTAT+CGG | - | chr4.2:7998994-7999013 | None:intergenic | 25.0% |
| ! | TATGAACAATTTAATCCCAA+AGG | - | chr4.2:8000376-8000395 | None:intergenic | 25.0% |
| ! | TCTTCCAAAGTTAATTAGAT+TGG | + | chr4.2:8000658-8000677 | MS.gene030545:CDS | 25.0% |
| ! | TGTGAACAGATAAAAGTTAT+TGG | + | chr4.2:8000608-8000627 | MS.gene030545:intron | 25.0% |
| ! | TTTGATATTGTTATGATTGG+TGG | + | chr4.2:7998342-7998361 | MS.gene030545:intron | 25.0% |
| !! | TACAAGAAAATACACTTTTG+AGG | + | chr4.2:8000715-8000734 | MS.gene030545:CDS | 25.0% |
| !! | TTATGATTGGTGGTTATTAT+TGG | + | chr4.2:7998352-7998371 | MS.gene030545:intron | 25.0% |
| !!! | ATAAAAGTTATTGGCTCATA+TGG | + | chr4.2:8000617-8000636 | MS.gene030545:CDS | 25.0% |
| AAGCGGTGATAAAGTTAAAA+TGG | - | chr4.2:7999592-7999611 | None:intergenic | 30.0% | |
| ACCATAATTCAGTTGACAAA+TGG | - | chr4.2:7998807-7998826 | None:intergenic | 30.0% | |
| ACCGATATACATGTATAGTA+TGG | + | chr4.2:7999188-7999207 | MS.gene030545:CDS | 30.0% | |
| AGAGTAGACTCCTTTATAAT+TGG | + | chr4.2:7999132-7999151 | MS.gene030545:intron | 30.0% | |
| AGCAAAAAGGAATAACAAGT+AGG | + | chr4.2:7998666-7998685 | MS.gene030545:intron | 30.0% | |
| AGCATTATCACACAAAAATG+TGG | - | chr4.2:7998597-7998616 | None:intergenic | 30.0% | |
| ATATACATGTATAGTATGGG+AGG | + | chr4.2:7999192-7999211 | MS.gene030545:CDS | 30.0% | |
| CACTCAATTGAGTTTAAAAG+CGG | - | chr4.2:8000406-8000425 | None:intergenic | 30.0% | |
| CCCATACTATACATGTATAT+CGG | - | chr4.2:7999192-7999211 | None:intergenic | 30.0% | |
| CCGATATACATGTATAGTAT+GGG | + | chr4.2:7999189-7999208 | MS.gene030545:CDS | 30.0% | |
| GAATCAAGTAAGAAGTAAGA+GGG | - | chr4.2:7998963-7998982 | None:intergenic | 30.0% | |
| GACTATGTAAACACATACTT+AGG | - | chr4.2:7999055-7999074 | None:intergenic | 30.0% | |
| GCAAAAATAGAAAAAGGAAG+TGG | - | chr4.2:7999458-7999477 | None:intergenic | 30.0% | |
| TATACATGTATAGTATGGGA+GGG | + | chr4.2:7999193-7999212 | MS.gene030545:CDS | 30.0% | |
| TCCAACATGAATAAAACTAG+TGG | - | chr4.2:8000160-8000179 | None:intergenic | 30.0% | |
| TCCATTTGTCAACTGAATTA+TGG | + | chr4.2:7998803-7998822 | MS.gene030545:intron | 30.0% | |
| TCTGCCAATCTAATTAACTT+TGG | - | chr4.2:8000665-8000684 | None:intergenic | 30.0% | |
| TGAATCAAGTAAGAAGTAAG+AGG | - | chr4.2:7998964-7998983 | None:intergenic | 30.0% | |
| TGCAACTCACACAATAAATT+CGG | + | chr4.2:7999706-7999725 | MS.gene030545:CDS | 30.0% | |
| TGTATATTGCAGCTTAATTG+TGG | + | chr4.2:7998291-7998310 | MS.gene030545:intron | 30.0% | |
| TTAATTAGATTGGCAGAAAC+AGG | + | chr4.2:8000668-8000687 | MS.gene030545:CDS | 30.0% | |
| TTCGATAATGCTTGCTTAAA+TGG | + | chr4.2:7999481-7999500 | MS.gene030545:intron | 30.0% | |
| TTGTTCAACAGTTCAAGTAA+AGG | - | chr4.2:8000339-8000358 | None:intergenic | 30.0% | |
| ! | AGCTGCAATATACAAGTTTT+AGG | - | chr4.2:7998285-7998304 | None:intergenic | 30.0% |
| ! | CTTTAACCTTTCTATGGTTT+TGG | - | chr4.2:7998534-7998553 | None:intergenic | 30.0% |
| ! | TAAGAATTAGGTTGTACAAG+TGG | + | chr4.2:8000308-8000327 | MS.gene030545:intron | 30.0% |
| ! | TATAATTGCTGTTGATGTTC+AGG | + | chr4.2:7999652-7999671 | MS.gene030545:CDS | 30.0% |
| ! | TGTATTTTCTTGTAACAGCA+TGG | - | chr4.2:8000709-8000728 | None:intergenic | 30.0% |
| !!! | ACCACTAGTTTTATTCATGT+TGG | + | chr4.2:8000156-8000175 | MS.gene030545:intron | 30.0% |
| !!! | AGATGTGATTTTTTGAATGC+AGG | + | chr4.2:7998389-7998408 | MS.gene030545:intron | 30.0% |
| ACAACACAAGGACTTGAAAA+CGG | - | chr4.2:7998461-7998480 | None:intergenic | 35.0% | |
| AGAGAGATAAACAATACCCT+TGG | - | chr4.2:7998194-7998213 | None:intergenic | 35.0% | |
| ATCAACAGCAATTATATCCG+AGG | - | chr4.2:7999648-7999667 | None:intergenic | 35.0% | |
| CAATGTTACCTTTGAACAGT+AGG | - | chr4.2:7998768-7998787 | None:intergenic | 35.0% | |
| CTCAACGAAGGAAAAATAGT+CGG | + | chr4.2:8000761-8000780 | MS.gene030545:CDS | 35.0% | |
| CTGATTCCAAAACCATAGAA+AGG | + | chr4.2:7998525-7998544 | MS.gene030545:CDS | 35.0% | |
| GAACTTCTCATCAAAACCAA+GGG | + | chr4.2:7998175-7998194 | MS.gene030545:CDS | 35.0% | |
| GGATTGTTCTTGATTGTTTC+AGG | + | chr4.2:7998687-7998706 | MS.gene030545:intron | 35.0% | |
| GTGTTTATGCTGTCTACAAA+CGG | + | chr4.2:7998831-7998850 | MS.gene030545:intron | 35.0% | |
| GTTCTGGCAATTAAACAATG+AGG | - | chr4.2:7999781-7999800 | None:intergenic | 35.0% | |
| TCACACAATAAATTCGGCTA+AGG | + | chr4.2:7999712-7999731 | MS.gene030545:CDS | 35.0% | |
| TCAGCAACAACTTCTTGAAA+AGG | + | chr4.2:7997960-7997979 | MS.gene030545:CDS | 35.0% | |
| TCTGATCTTCATGTCATGAA+AGG | + | chr4.2:7998428-7998447 | MS.gene030545:CDS | 35.0% | |
| TCTTGAAAAGGTTGTCTTGT+TGG | + | chr4.2:7997972-7997991 | MS.gene030545:CDS | 35.0% | |
| TGAAATTCTTCAATGGTGAG+AGG | - | chr4.2:7998133-7998152 | None:intergenic | 35.0% | |
| TGAACTTCTCATCAAAACCA+AGG | + | chr4.2:7998174-7998193 | MS.gene030545:CDS | 35.0% | |
| TGTCAACTGAATTATGGTCT+CGG | + | chr4.2:7998809-7998828 | MS.gene030545:intron | 35.0% | |
| ! | AAATAGACTTGTTCGCAGAA+AGG | + | chr4.2:8000066-8000085 | MS.gene030545:CDS | 35.0% |
| ! | AGTCATAGTTTTCTCTGCTA+TGG | + | chr4.2:7999071-7999090 | MS.gene030545:intron | 35.0% |
| ! | GTTCTTGATGACTAGCAAAA+AGG | + | chr4.2:7998653-7998672 | MS.gene030545:intron | 35.0% |
| ! | TATTCCCATACCCCTAATTT+TGG | - | chr4.2:8000290-8000309 | None:intergenic | 35.0% |
| ! | TTTTACTGCTTATGGTGCAA+TGG | + | chr4.2:7999308-7999327 | MS.gene030545:CDS | 35.0% |
| ! | TTTTCATATATCCGAGCAGT+AGG | + | chr4.2:7999544-7999563 | MS.gene030545:intron | 35.0% |
| !! | AAAGTTATTGGCTCATATGG+AGG | + | chr4.2:8000620-8000639 | MS.gene030545:CDS | 35.0% |
| !! | AAATACACTTTTGAGGAGTC+AGG | + | chr4.2:8000722-8000741 | MS.gene030545:CDS | 35.0% |
| !! | AAGTTATTGGCTCATATGGA+GGG | + | chr4.2:8000621-8000640 | MS.gene030545:CDS | 35.0% |
| !!! | GATTTTTTGAATGCAGGATG+TGG | + | chr4.2:7998395-7998414 | MS.gene030545:intron | 35.0% |
| !!! | TGTGCTGTTTTTACTGCTTA+TGG | + | chr4.2:7999300-7999319 | MS.gene030545:CDS | 35.0% |
| !!! | TTTTCAAGTCCTTGTGTTGT+GGG | + | chr4.2:7998461-7998480 | MS.gene030545:CDS | 35.0% |
| AAAAGCAGTGATGATTGGAC+TGG | + | chr4.2:8000012-8000031 | MS.gene030545:CDS | 40.0% | |
| AACTTCACGCAGGAAATTAC+TGG | + | chr4.2:7999905-7999924 | MS.gene030545:intron | 40.0% | |
| ACACAAAGTGTGAAAGATGG+AGG | + | chr4.2:7999989-8000008 | MS.gene030545:CDS | 40.0% | |
| ACATCCTAGAATTGCAGACT+CGG | - | chr4.2:7999283-7999302 | None:intergenic | 40.0% | |
| ACGAAGGAAAAATAGTCGGT+CGG | + | chr4.2:8000765-8000784 | MS.gene030545:CDS | 40.0% | |
| ACTGGTGAAGTTGTTGAACA+TGG | + | chr4.2:7998494-7998513 | MS.gene030545:CDS | 40.0% | |
| ACTTCACGTCAATTCTGCTT+TGG | - | chr4.2:8000491-8000510 | None:intergenic | 40.0% | |
| ATAACAGCAACAGTATCACC+AGG | - | chr4.2:7999354-7999373 | None:intergenic | 40.0% | |
| ATGAGAAGTTCACCAGCTTT+GGG | - | chr4.2:7998166-7998185 | None:intergenic | 40.0% | |
| CAACTGTTCCTACTGTTCAA+AGG | + | chr4.2:7998757-7998776 | MS.gene030545:CDS | 40.0% | |
| CAACTTCACCAGTAATCTCA+TGG | - | chr4.2:7998487-7998506 | None:intergenic | 40.0% | |
| CAGGAAATTACTGGTGGAAA+GGG | + | chr4.2:7999914-7999933 | MS.gene030545:intron | 40.0% | |
| CTAGAGAAAGCAAAGACACT+TGG | + | chr4.2:7999683-7999702 | MS.gene030545:CDS | 40.0% | |
| GATTGTTTCAGGCTTCCAAT+TGG | + | chr4.2:7998698-7998717 | MS.gene030545:intron | 40.0% | |
| GCAAAAGGAACCTTATACGA+TGG | + | chr4.2:7998903-7998922 | MS.gene030545:CDS | 40.0% | |
| GGGGTATGGGAATAAGAATT+AGG | + | chr4.2:8000296-8000315 | MS.gene030545:intron | 40.0% | |
| TAACAGCAACAGTATCACCA+GGG | - | chr4.2:7999353-7999372 | None:intergenic | 40.0% | |
| TATACCGAGTCTGCAATTCT+AGG | + | chr4.2:7999276-7999295 | MS.gene030545:CDS | 40.0% | |
| TCAAGCCAAAATTAGGGGTA+TGG | + | chr4.2:8000282-8000301 | MS.gene030545:intron | 40.0% | |
| TCATGACATGAAGATCAGAG+TGG | - | chr4.2:7998427-7998446 | None:intergenic | 40.0% | |
| TCGAGTTTCACCATCGTATA+AGG | - | chr4.2:7998916-7998935 | None:intergenic | 40.0% | |
| TGCACACAAAGTGTGAAAGA+TGG | + | chr4.2:7999986-8000005 | MS.gene030545:CDS | 40.0% | |
| TGTTAGGAGCTAATAGACAG+AGG | - | chr4.2:7999818-7999837 | None:intergenic | 40.0% | |
| TGTTGAAGCTGATGCATGTA+CGG | + | chr4.2:7998027-7998046 | MS.gene030545:CDS | 40.0% | |
| TTATGCACGATAGTGTGAGT+GGG | - | chr4.2:7999844-7999863 | None:intergenic | 40.0% | |
| TTCAATGGTGAGAGGTTTGT+TGG | - | chr4.2:7998125-7998144 | None:intergenic | 40.0% | |
| TTGCAGCTTAATTGTGGTTG+TGG | + | chr4.2:7998297-7998316 | MS.gene030545:intron | 40.0% | |
| TTTATGCACGATAGTGTGAG+TGG | - | chr4.2:7999845-7999864 | None:intergenic | 40.0% | |
| TTTGCTTATAACCGCGCAAA+AGG | + | chr4.2:7998888-7998907 | MS.gene030545:CDS | 40.0% | |
| ! | ACTGTTGCTGTTATTGGAAC+TGG | + | chr4.2:7999360-7999379 | MS.gene030545:CDS | 40.0% |
| ! | AGAATTGCAGACTCGGTATA+TGG | - | chr4.2:7999276-7999295 | None:intergenic | 40.0% |
| ! | ATGTTGCTGTTGAAGCCTTA+GGG | + | chr4.2:7999942-7999961 | MS.gene030545:CDS | 40.0% |
| ! | CAAGCCAAAATTAGGGGTAT+GGG | + | chr4.2:8000283-8000302 | MS.gene030545:intron | 40.0% |
| ! | CTGTTGCTGTTATTGGAACT+GGG | + | chr4.2:7999361-7999380 | MS.gene030545:CDS | 40.0% |
| ! | GGTGATACTGTTGCTGTTAT+TGG | + | chr4.2:7999354-7999373 | MS.gene030545:CDS | 40.0% |
| ! | TAAGTGAGGTGCTACACTAA+AGG | - | chr4.2:8000554-8000573 | None:intergenic | 40.0% |
| ! | TCAATGGTGAGAGGTTTGTT+GGG | - | chr4.2:7998124-7998143 | None:intergenic | 40.0% |
| ! | TCGGTATATGGCATTGAGTT+TGG | - | chr4.2:7999264-7999283 | None:intergenic | 40.0% |
| ! | TGTTGCTGTTATTGGAACTG+GGG | + | chr4.2:7999362-7999381 | MS.gene030545:CDS | 40.0% |
| ! | TGTTTTCTCTAACTTCACGC+AGG | + | chr4.2:7999895-7999914 | MS.gene030545:intron | 40.0% |
| ! | TTTTTCCTTCGTTGAGATCC+TGG | - | chr4.2:8000757-8000776 | None:intergenic | 40.0% |
| !!! | GTTTTCAAGTCCTTGTGTTG+TGG | + | chr4.2:7998460-7998479 | MS.gene030545:CDS | 40.0% |
| AAATGTCTGTGGTCTCCCTA+AGG | - | chr4.2:7999960-7999979 | None:intergenic | 45.0% | |
| AAGCTTCGCACAGATCATCA+TGG | - | chr4.2:7998866-7998885 | None:intergenic | 45.0% | |
| AATACCGCCAATGCATTTGC+TGG | - | chr4.2:7999240-7999259 | None:intergenic | 45.0% | |
| ACCAACAGCTTCTGTGTGAA+TGG | - | chr4.2:7998056-7998075 | None:intergenic | 45.0% | |
| ATTCACACAGAAGCTGTTGG+TGG | + | chr4.2:7998055-7998074 | MS.gene030545:CDS | 45.0% | |
| CCAACAACTCGAGATCCAAT+TGG | - | chr4.2:7998716-7998735 | None:intergenic | 45.0% | |
| CCCTGCTCAAGCCAAAATTA+GGG | + | chr4.2:8000276-8000295 | MS.gene030545:intron | 45.0% | |
| CCTGCTCAAGCCAAAATTAG+GGG | + | chr4.2:8000277-8000296 | MS.gene030545:intron | 45.0% | |
| CGAAGGAAAAATAGTCGGTC+GGG | + | chr4.2:8000766-8000785 | MS.gene030545:CDS | 45.0% | |
| CTGTCTACAAACGGTATGCA+GGG | + | chr4.2:7998840-7998859 | MS.gene030545:intron | 45.0% | |
| GAAACAGGTATCTTCGACCT+TGG | + | chr4.2:8000683-8000702 | MS.gene030545:CDS | 45.0% | |
| GATGAGAAGTTCACCAGCTT+TGG | - | chr4.2:7998167-7998186 | None:intergenic | 45.0% | |
| GCAGGAAATTACTGGTGGAA+AGG | + | chr4.2:7999913-7999932 | MS.gene030545:intron | 45.0% | |
| GGAGGAAAAGCAGTGATGAT+TGG | + | chr4.2:8000007-8000026 | MS.gene030545:CDS | 45.0% | |
| TAGTGTGAGTGGGTGATGTT+AGG | - | chr4.2:7999834-7999853 | None:intergenic | 45.0% | |
| TATCTGCAGACAACTGGAAG+CGG | - | chr4.2:7999609-7999628 | None:intergenic | 45.0% | |
| TCCATTCACACAGAAGCTGT+TGG | + | chr4.2:7998052-7998071 | MS.gene030545:CDS | 45.0% | |
| TCTAGCTATCTGCAGACAAC+TGG | - | chr4.2:7999615-7999634 | None:intergenic | 45.0% | |
| TGCCAGAACTCTATCTTGTG+CGG | + | chr4.2:7999792-7999811 | MS.gene030545:intron | 45.0% | |
| TGTTGTGCCAGCAAATGCAT+TGG | + | chr4.2:7999230-7999249 | MS.gene030545:CDS | 45.0% | |
| TTCACGCAGGAAATTACTGG+TGG | + | chr4.2:7999908-7999927 | MS.gene030545:intron | 45.0% | |
| TTCTTGTAACAGCATGGCCA+AGG | - | chr4.2:8000703-8000722 | None:intergenic | 45.0% | |
| ! | ACAAGCTGGTTCTTTAGGAG+AGG | + | chr4.2:8000036-8000055 | MS.gene030545:CDS | 45.0% |
| ! | CCAATTGGATCTCGAGTTGT+TGG | + | chr4.2:7998713-7998732 | MS.gene030545:CDS | 45.0% |
| ! | CGTATAAGGTTCCTTTTGCG+CGG | - | chr4.2:7998902-7998921 | None:intergenic | 45.0% |
| ! | CTGCAGATAGCTAGAGCATT+TGG | + | chr4.2:7999620-7999639 | MS.gene030545:CDS | 45.0% |
| ! | GAAACTCGACTGTTTCTTCG+AGG | + | chr4.2:7998927-7998946 | MS.gene030545:CDS | 45.0% |
| ! | GATGTTGCTGTTGAAGCCTT+AGG | + | chr4.2:7999941-7999960 | MS.gene030545:CDS | 45.0% |
| ! | GTTGCTGTTATTGGAACTGG+GGG | + | chr4.2:7999363-7999382 | MS.gene030545:CDS | 45.0% |
| !! | TATTGGCTCATATGGAGGGA+GGG | + | chr4.2:8000625-8000644 | MS.gene030545:CDS | 45.0% |
| !! | TTATTGGCTCATATGGAGGG+AGG | + | chr4.2:8000624-8000643 | MS.gene030545:CDS | 45.0% |
| !!! | ACATGCGTGGTGCTGTTTTT+CGG | + | chr4.2:7998095-7998114 | MS.gene030545:CDS | 45.0% |
| !!! | CCCTAATTTTGGCTTGAGCA+GGG | - | chr4.2:8000279-8000298 | None:intergenic | 45.0% |
| ACAGCACCACGCATGTAAGA+TGG | - | chr4.2:7998091-7998110 | None:intergenic | 50.0% | |
| ATCTCATGGCCCACAACACA+AGG | - | chr4.2:7998473-7998492 | None:intergenic | 50.0% | |
| CATATTCCTCGTCCCAAAGC+TGG | + | chr4.2:7998151-7998170 | MS.gene030545:CDS | 50.0% | |
| GCATTCCAGGATCTCAACGA+AGG | + | chr4.2:8000749-8000768 | MS.gene030545:CDS | 50.0% | |
| GCCCTGCTCAAGCCAAAATT+AGG | + | chr4.2:8000275-8000294 | MS.gene030545:intron | 50.0% | |
| GCTGTCTACAAACGGTATGC+AGG | + | chr4.2:7998839-7998858 | MS.gene030545:intron | 50.0% | |
| GGAGCCTTCATTATGCCTTG+CGG | + | chr4.2:7998734-7998753 | MS.gene030545:CDS | 50.0% | |
| GGATTGCCATCTTACATGCG+TGG | + | chr4.2:7998082-7998101 | MS.gene030545:CDS | 50.0% | |
| GTGCACTGAGCAAATGTCTG+TGG | - | chr4.2:7999971-7999990 | None:intergenic | 50.0% | |
| GTTGATCAGAGCCTACTGCT+CGG | - | chr4.2:7999558-7999577 | None:intergenic | 50.0% | |
| GTTGCCGCAAGGCATAATGA+AGG | - | chr4.2:7998741-7998760 | None:intergenic | 50.0% | |
| GTTGTGGGCCATGAGATTAC+TGG | + | chr4.2:7998476-7998495 | MS.gene030545:CDS | 50.0% | |
| TGGCATCTGCACTAGTTCGT+AGG | + | chr4.2:7997930-7997949 | MS.gene030545:CDS | 50.0% | |
| TGTGCCAGCAAATGCATTGG+CGG | + | chr4.2:7999233-7999252 | MS.gene030545:CDS | 50.0% | |
| ! | AGCTGGTTCTTTAGGAGAGG+TGG | + | chr4.2:8000039-8000058 | MS.gene030545:CDS | 50.0% |
| ! | CGACTGTTTCTTCGAGGAAG+TGG | + | chr4.2:7998933-7998952 | MS.gene030545:CDS | 50.0% |
| ! | CTGGCACAAGCTGGTTCTTT+AGG | + | chr4.2:8000031-8000050 | MS.gene030545:CDS | 50.0% |
| ! | GTTATTGGAACTGGGGGTGT+TGG | + | chr4.2:7999369-7999388 | MS.gene030545:CDS | 50.0% |
| !! | ACAGAAGCTGTTGGTGGTGT+TGG | + | chr4.2:7998061-7998080 | MS.gene030545:CDS | 50.0% |
| !! | AGCTAGAGCATTTGGTGCCT+CGG | + | chr4.2:7999628-7999647 | MS.gene030545:CDS | 50.0% |
| !! | ATGATTGGACTGGCACAAGC+TGG | + | chr4.2:8000022-8000041 | MS.gene030545:CDS | 50.0% |
| !!! | CATGCGTGGTGCTGTTTTTC+GGG | + | chr4.2:7998096-7998115 | MS.gene030545:CDS | 50.0% |
| !!! | CCCCTAATTTTGGCTTGAGC+AGG | - | chr4.2:8000280-8000299 | None:intergenic | 50.0% |
| AGTATCACCAGGGCGCACTT+CGG | - | chr4.2:7999343-7999362 | None:intergenic | 55.0% | |
| CAGTAGGAACAGTTGCCGCA+AGG | - | chr4.2:7998752-7998771 | None:intergenic | 55.0% | |
| GGCCGCACAAGATAGAGTTC+TGG | - | chr4.2:7999797-7999816 | None:intergenic | 55.0% | |
| ! | GGAGTCAGGCAAAGCATTCC+AGG | + | chr4.2:8000736-8000755 | MS.gene030545:CDS | 55.0% |
| !! | AGTTCACCAGCTTTGGGACG+AGG | - | chr4.2:7998160-7998179 | None:intergenic | 55.0% |
| !! | GAACTGGGGGTGTTGGTTCT+AGG | + | chr4.2:7999376-7999395 | MS.gene030545:CDS | 55.0% |
| GCTCATATGGAGGGAGGGCT+AGG | + | chr4.2:8000630-8000649 | MS.gene030545:CDS | 60.0% | |
| CATGCAGCCGAAGTGCGCCC+TGG | + | chr4.2:7999333-7999352 | MS.gene030545:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 7997929 | 8000808 | 7997929 | ID=MS.gene030545 |
| chr4.2 | mRNA | 7997929 | 8000808 | 7997929 | ID=MS.gene030545.t1;Parent=MS.gene030545 |
| chr4.2 | exon | 7997929 | 7998196 | 7997929 | ID=MS.gene030545.t1.exon1;Parent=MS.gene030545.t1 |
| chr4.2 | CDS | 7997929 | 7998196 | 7997929 | ID=cds.MS.gene030545.t1;Parent=MS.gene030545.t1 |
| chr4.2 | exon | 7998411 | 7998546 | 7998411 | ID=MS.gene030545.t1.exon2;Parent=MS.gene030545.t1 |
| chr4.2 | CDS | 7998411 | 7998546 | 7998411 | ID=cds.MS.gene030545.t1;Parent=MS.gene030545.t1 |
| chr4.2 | exon | 7998709 | 7998778 | 7998709 | ID=MS.gene030545.t1.exon3;Parent=MS.gene030545.t1 |
| chr4.2 | CDS | 7998709 | 7998778 | 7998709 | ID=cds.MS.gene030545.t1;Parent=MS.gene030545.t1 |
| chr4.2 | exon | 7998861 | 7998954 | 7998861 | ID=MS.gene030545.t1.exon4;Parent=MS.gene030545.t1 |
| chr4.2 | CDS | 7998861 | 7998954 | 7998861 | ID=cds.MS.gene030545.t1;Parent=MS.gene030545.t1 |
| chr4.2 | exon | 7999184 | 7999397 | 7999184 | ID=MS.gene030545.t1.exon5;Parent=MS.gene030545.t1 |
| chr4.2 | CDS | 7999184 | 7999397 | 7999184 | ID=cds.MS.gene030545.t1;Parent=MS.gene030545.t1 |
| chr4.2 | exon | 7999616 | 7999757 | 7999616 | ID=MS.gene030545.t1.exon6;Parent=MS.gene030545.t1 |
| chr4.2 | CDS | 7999616 | 7999757 | 7999616 | ID=cds.MS.gene030545.t1;Parent=MS.gene030545.t1 |
| chr4.2 | exon | 7999917 | 8000087 | 7999917 | ID=MS.gene030545.t1.exon7;Parent=MS.gene030545.t1 |
| chr4.2 | CDS | 7999917 | 8000087 | 7999917 | ID=cds.MS.gene030545.t1;Parent=MS.gene030545.t1 |
| chr4.2 | exon | 8000617 | 8000808 | 8000617 | ID=MS.gene030545.t1.exon8;Parent=MS.gene030545.t1 |
| chr4.2 | CDS | 8000617 | 8000808 | 8000617 | ID=cds.MS.gene030545.t1;Parent=MS.gene030545.t1 |
| Gene Sequence |
| Protein sequence |