Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045378.t1 | XP_003601649.1 | 98.8 | 326 | 4 | 0 | 1 | 326 | 1 | 326 | 1.70E-175 | 625.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045378.t1 | Q9LIR9 | 73.3 | 311 | 83 | 0 | 3 | 313 | 4 | 314 | 2.7e-124 | 446.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045378.t1 | G7JA72 | 98.8 | 326 | 4 | 0 | 1 | 326 | 1 | 326 | 1.3e-175 | 625.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52088 | MS.gene045378 | PPI |
| MS.gene057722 | MS.gene045378 | PPI |
| MS.gene90964 | MS.gene045378 | PPI |
| MS.gene045378 | MS.gene00614 | PPI |
| MS.gene045378 | MS.gene072062 | PPI |
| MS.gene045378 | MS.gene047204 | PPI |
| MS.gene002040 | MS.gene045378 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045378.t1 | MTR_3g083960 | 98.773 | 326 | 4 | 0 | 1 | 326 | 1 | 326 | 0.0 | 659 |
| MS.gene045378.t1 | MTR_8g081650 | 78.571 | 322 | 69 | 0 | 1 | 322 | 1 | 322 | 0.0 | 511 |
| MS.gene045378.t1 | MTR_2g006070 | 70.234 | 299 | 89 | 0 | 2 | 300 | 12 | 310 | 3.60e-152 | 431 |
| MS.gene045378.t1 | MTR_5g090020 | 58.383 | 334 | 130 | 2 | 1 | 325 | 1 | 334 | 4.38e-133 | 382 |
| MS.gene045378.t1 | MTR_4g074050 | 57.792 | 308 | 129 | 1 | 1 | 308 | 1 | 307 | 7.63e-133 | 381 |
| MS.gene045378.t1 | MTR_8g095060 | 58.147 | 313 | 129 | 2 | 3 | 315 | 1 | 311 | 1.74e-132 | 381 |
| MS.gene045378.t1 | MTR_3g097220 | 54.925 | 335 | 139 | 2 | 4 | 326 | 3 | 337 | 6.19e-131 | 377 |
| MS.gene045378.t1 | MTR_3g097220 | 56.522 | 322 | 138 | 2 | 4 | 325 | 3 | 322 | 1.03e-130 | 376 |
| MS.gene045378.t1 | MTR_2g006070 | 69.099 | 233 | 72 | 0 | 2 | 234 | 12 | 244 | 2.75e-109 | 318 |
| MS.gene045378.t1 | MTR_5g090020 | 56.777 | 273 | 110 | 1 | 61 | 325 | 17 | 289 | 5.00e-102 | 302 |
| MS.gene045378.t1 | MTR_2g006070 | 70.745 | 188 | 55 | 0 | 2 | 189 | 12 | 199 | 7.91e-87 | 259 |
| MS.gene045378.t1 | MTR_3g097220 | 51.982 | 227 | 107 | 2 | 99 | 325 | 1 | 225 | 4.11e-81 | 246 |
| MS.gene045378.t1 | MTR_6g033100 | 20.548 | 292 | 216 | 2 | 50 | 325 | 52 | 343 | 1.96e-13 | 70.9 |
| MS.gene045378.t1 | MTR_5g049870 | 45.455 | 77 | 30 | 2 | 240 | 308 | 166 | 238 | 2.51e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045378.t1 | AT1G71900 | 71.380 | 297 | 85 | 0 | 2 | 298 | 14 | 310 | 8.63e-161 | 452 |
| MS.gene045378.t1 | AT1G71900 | 71.380 | 297 | 85 | 0 | 2 | 298 | 14 | 310 | 8.31e-160 | 450 |
| MS.gene045378.t1 | AT1G34470 | 70.034 | 297 | 89 | 0 | 2 | 298 | 14 | 310 | 2.35e-154 | 437 |
| MS.gene045378.t1 | AT4G13800 | 72.063 | 315 | 86 | 1 | 3 | 317 | 4 | 316 | 7.39e-153 | 432 |
| MS.gene045378.t1 | AT4G13800 | 72.063 | 315 | 86 | 1 | 3 | 317 | 4 | 316 | 7.39e-153 | 432 |
| MS.gene045378.t1 | AT4G13800 | 72.063 | 315 | 86 | 1 | 3 | 317 | 4 | 316 | 7.39e-153 | 432 |
| MS.gene045378.t1 | AT4G13800 | 72.063 | 315 | 86 | 1 | 3 | 317 | 4 | 316 | 7.39e-153 | 432 |
| MS.gene045378.t1 | AT3G23870 | 73.312 | 311 | 83 | 0 | 3 | 313 | 4 | 314 | 1.48e-146 | 416 |
| MS.gene045378.t1 | AT3G23870 | 73.312 | 311 | 83 | 0 | 3 | 313 | 4 | 314 | 1.48e-146 | 416 |
| MS.gene045378.t1 | AT3G23870 | 73.312 | 311 | 83 | 0 | 3 | 313 | 4 | 314 | 1.48e-146 | 416 |
| MS.gene045378.t1 | AT3G23870 | 73.312 | 311 | 83 | 0 | 3 | 313 | 4 | 314 | 1.48e-146 | 416 |
| MS.gene045378.t1 | AT4G09640 | 65.741 | 324 | 110 | 1 | 2 | 325 | 14 | 336 | 2.48e-144 | 412 |
| MS.gene045378.t1 | AT4G38730 | 55.590 | 322 | 137 | 1 | 5 | 326 | 3 | 318 | 6.57e-132 | 379 |
| MS.gene045378.t1 | AT2G21120 | 55.077 | 325 | 140 | 2 | 3 | 326 | 1 | 320 | 9.98e-132 | 378 |
| MS.gene045378.t1 | AT4G13800 | 74.144 | 263 | 68 | 0 | 3 | 265 | 4 | 266 | 2.58e-128 | 367 |
| MS.gene045378.t1 | AT4G13800 | 74.144 | 263 | 68 | 0 | 3 | 265 | 4 | 266 | 2.58e-128 | 367 |
| MS.gene045378.t1 | AT3G23870 | 70.485 | 227 | 67 | 0 | 87 | 313 | 8 | 234 | 7.03e-111 | 323 |
| MS.gene045378.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.14e-108 | 316 |
| MS.gene045378.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.14e-108 | 316 |
| MS.gene045378.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.14e-108 | 316 |
| MS.gene045378.t1 | AT4G13800 | 71.610 | 236 | 67 | 0 | 3 | 238 | 4 | 239 | 2.14e-108 | 316 |
| MS.gene045378.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 1.68e-12 | 68.2 |
| MS.gene045378.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 1.68e-12 | 68.2 |
| MS.gene045378.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 1.68e-12 | 68.2 |
| MS.gene045378.t1 | AT3G26670 | 20.446 | 269 | 200 | 2 | 50 | 304 | 50 | 318 | 1.68e-12 | 68.2 |
Find 65 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCAGCATAATAATGTTTA+AGG | 0.148866 | 3.4:-78752522 | MS.gene045378:intron |
| CCTTCACAAAACTAAGGATA+TGG | 0.215788 | 3.4:-78752125 | MS.gene045378:CDS |
| ATATCCTCCGACAACGTTAT+TGG | 0.275140 | 3.4:-78754223 | MS.gene045378:CDS |
| TGCTCACAAGCTTCAAATTT+CGG | 0.287897 | 3.4:+78752027 | None:intergenic |
| TGCCATCCTTGTAACTCCTT+TGG | 0.293323 | 3.4:-78753488 | MS.gene045378:CDS |
| AAAGAGAGATTGCATGTCTT+TGG | 0.311793 | 3.4:-78753335 | MS.gene045378:CDS |
| GCCATCCTTGTAACTCCTTT+GGG | 0.313908 | 3.4:-78753487 | MS.gene045378:CDS |
| CTTCAAATTTCGGATCTATC+TGG | 0.323795 | 3.4:+78752037 | None:intergenic |
| TATTGTATACTCTTGCTTGA+TGG | 0.331593 | 3.4:-78753045 | MS.gene045378:CDS |
| CAACGTTATTGGTCTTTGTT+TGG | 0.334057 | 3.4:-78754212 | MS.gene045378:CDS |
| CATTATTATGCTGGCGATGA+TGG | 0.391168 | 3.4:+78752529 | None:intergenic |
| TTCTCTCACGGGCTCAATTA+CGG | 0.396382 | 3.4:-78752943 | MS.gene045378:intron |
| TTCATTCTGTCAAGGAAGTA+TGG | 0.396932 | 3.4:-78753241 | MS.gene045378:CDS |
| TTGCATGTCTTTGGCGTGCT+TGG | 0.400448 | 3.4:-78753326 | MS.gene045378:CDS |
| GGTGTCTTAGCAGTATTGTT+AGG | 0.405653 | 3.4:+78752058 | None:intergenic |
| GGATGTGCTCTCTGTGTGGT+GGG | 0.414278 | 3.4:-78753305 | MS.gene045378:CDS |
| ACCTGCTCTATTCCCATTAG+TGG | 0.423488 | 3.4:+78754123 | None:intergenic |
| TACCTTAAACATTATTATGC+TGG | 0.433334 | 3.4:+78752520 | None:intergenic |
| ACCCATCTGGTTGTTTATGT+TGG | 0.437188 | 3.4:-78752972 | MS.gene045378:CDS |
| GCTTTGAAACTTTCATTTGA+AGG | 0.443933 | 3.4:-78752790 | MS.gene045378:CDS |
| CTTCACAAAACTAAGGATAT+GGG | 0.475464 | 3.4:-78752124 | MS.gene045378:CDS |
| TTCTTTACATTAGTTGTGAT+AGG | 0.477243 | 3.4:-78752736 | MS.gene045378:CDS |
| CTCTTGCTTGATGGTGGCGC+TGG | 0.486099 | 3.4:-78753036 | MS.gene045378:CDS |
| TCAAGTAGTTGATTTGCAAA+AGG | 0.495628 | 3.4:+78752707 | None:intergenic |
| TGTTGGAATATGTTCTCTCA+CGG | 0.496357 | 3.4:-78752955 | MS.gene045378:CDS |
| TGATATCACATTAGTGTTGA+AGG | 0.498124 | 3.4:+78752583 | None:intergenic |
| TATGAACCACGGTGGTGGGC+TGG | 0.499044 | 3.4:-78753976 | MS.gene045378:CDS |
| TGGATGTGCTCTCTGTGTGG+TGG | 0.507876 | 3.4:-78753306 | MS.gene045378:CDS |
| ATTTGTATGAACCACGGTGG+TGG | 0.514111 | 3.4:-78753981 | MS.gene045378:CDS |
| CTTTGAAACTTTCATTTGAA+GGG | 0.519723 | 3.4:-78752789 | MS.gene045378:CDS |
| ATTCCTCCTTCACAAAACTA+AGG | 0.523907 | 3.4:-78752131 | MS.gene045378:CDS |
| GCCACTAATGGGAATAGAGC+AGG | 0.531481 | 3.4:-78754124 | MS.gene045378:intron |
| GTAAACATGACATAGTAAAC+CGG | 0.531823 | 3.4:+78752560 | None:intergenic |
| GAGTTATGGACAGACCCATC+TGG | 0.542858 | 3.4:-78752985 | MS.gene045378:CDS |
| AAAGGAGTTACAAGGATGGC+AGG | 0.547456 | 3.4:+78753490 | None:intergenic |
| TGGCAACTTGCTACAGAACC+AGG | 0.550915 | 3.4:-78753221 | MS.gene045378:intron |
| ACAAAGACCAATAACGTTGT+CGG | 0.553789 | 3.4:+78754216 | None:intergenic |
| GAAGAAAGAGAGATTTCTGC+GGG | 0.557974 | 3.4:+78752094 | None:intergenic |
| TGTATACTCTTGCTTGATGG+TGG | 0.561771 | 3.4:-78753042 | MS.gene045378:CDS |
| GTTGGAATATGTTCTCTCAC+GGG | 0.563829 | 3.4:-78752954 | MS.gene045378:CDS |
| TTCCAACATAAACAACCAGA+TGG | 0.564436 | 3.4:+78752970 | None:intergenic |
| GTTATGTGTGTCAAAGCAGT+AGG | 0.569363 | 3.4:-78752817 | MS.gene045378:CDS |
| AAGCTCCCAAAGGAGTTACA+AGG | 0.569548 | 3.4:+78753482 | None:intergenic |
| GATGTGCTCTCTGTGTGGTG+GGG | 0.576392 | 3.4:-78753304 | MS.gene045378:CDS |
| CAACACTAATGTGATATCAC+CGG | 0.577689 | 3.4:-78752579 | MS.gene045378:CDS |
| AATTTATTTACTTTGAGACA+TGG | 0.581957 | 3.4:-78752759 | MS.gene045378:CDS |
| TCTTAGCAGTATTGTTAGGA+CGG | 0.583449 | 3.4:+78752062 | None:intergenic |
| TTTGTATGAACCACGGTGGT+GGG | 0.606218 | 3.4:-78753980 | MS.gene045378:CDS |
| TTTCTTCACAGTGATTGTTG+GGG | 0.624149 | 3.4:-78753545 | MS.gene045378:intron |
| GCAAATCAACTACTTGAACA+AGG | 0.627635 | 3.4:-78752701 | MS.gene045378:intron |
| GAGAGTCATTCATTCTGTCA+AGG | 0.628128 | 3.4:-78753249 | MS.gene045378:CDS |
| TCCAACATAAACAACCAGAT+GGG | 0.633993 | 3.4:+78752971 | None:intergenic |
| GCTGGCGATGATGGTAAATG+AGG | 0.637214 | 3.4:+78752538 | None:intergenic |
| TGAAGAAAGAGAGATTTCTG+CGG | 0.649523 | 3.4:+78752093 | None:intergenic |
| GCAGTATTGTTAGGACGGTG+TGG | 0.650836 | 3.4:+78752067 | None:intergenic |
| CAAATATGAATGCCCTCCTG+TGG | 0.653211 | 3.4:+78753999 | None:intergenic |
| ATTCATATTTGTATGAACCA+CGG | 0.657686 | 3.4:-78753987 | MS.gene045378:CDS |
| TCCCAAAGGAGTTACAAGGA+TGG | 0.664654 | 3.4:+78753486 | None:intergenic |
| GCTTGGATGTGCTCTCTGTG+TGG | 0.668530 | 3.4:-78753309 | MS.gene045378:CDS |
| ATGATGCTTAAAGCTCCCAA+AGG | 0.673384 | 3.4:+78753472 | None:intergenic |
| AAGACCAATAACGTTGTCGG+AGG | 0.673692 | 3.4:+78754219 | None:intergenic |
| GAATGAATGACTCTCTCATG+TGG | 0.682284 | 3.4:+78753257 | None:intergenic |
| GTCATTCCAGCCCACCACCG+TGG | 0.686381 | 3.4:+78753970 | None:intergenic |
| AGATGCGTCTCAGATTGTGA+CGG | 0.697608 | 3.4:-78752188 | MS.gene045378:CDS |
| CATATTTGTATGAACCACGG+TGG | 0.737806 | 3.4:-78753984 | MS.gene045378:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCTTCATAATTAAAAAAAT+GGG | - | chr3.4:78752108-78752127 | MS.gene045378:CDS | 15.0% |
| !! | TAGCTTCATAATTAAAAAAA+TGG | - | chr3.4:78752107-78752126 | MS.gene045378:CDS | 15.0% |
| !! | TGTCTTTATAACTATTATTT+AGG | + | chr3.4:78754013-78754032 | None:intergenic | 15.0% |
| !!! | ATATTATAAATAACTTGTGA+TGG | + | chr3.4:78753806-78753825 | None:intergenic | 15.0% |
| !!! | ATATTTTTTTTTCTTCATCT+GGG | - | chr3.4:78752171-78752190 | MS.gene045378:CDS | 15.0% |
| !!! | ATTATTTAGGTTTCAAAAAA+AGG | + | chr3.4:78754000-78754019 | None:intergenic | 15.0% |
| !! | AAATAAATAAACCATCAAGA+CGG | + | chr3.4:78754037-78754056 | None:intergenic | 20.0% |
| !! | CTTAAAAGTTAAAACTCATT+CGG | - | chr3.4:78752508-78752527 | MS.gene045378:intron | 20.0% |
| !!! | AAAATAGTATAAGTTGAACA+TGG | + | chr3.4:78752630-78752649 | None:intergenic | 20.0% |
| !!! | AATTTATTTACTTTGAGACA+TGG | - | chr3.4:78753509-78753528 | MS.gene045378:CDS | 20.0% |
| !!! | AGTTGTTATGTTAGTTTATA+GGG | - | chr3.4:78752465-78752484 | MS.gene045378:intron | 20.0% |
| !!! | GATATTTTTTTTTCTTCATC+TGG | - | chr3.4:78752170-78752189 | MS.gene045378:CDS | 20.0% |
| !!! | GTATGTTTCTTATTTAATCT+GGG | - | chr3.4:78753637-78753656 | MS.gene045378:intron | 20.0% |
| !!! | TAGTTGTTATGTTAGTTTAT+AGG | - | chr3.4:78752464-78752483 | MS.gene045378:intron | 20.0% |
| !!! | TCTTGATGGTTTATTTATTT+TGG | - | chr3.4:78754037-78754056 | MS.gene045378:intron | 20.0% |
| !!! | TGTATGTTTCTTATTTAATC+TGG | - | chr3.4:78753636-78753655 | MS.gene045378:intron | 20.0% |
| !!! | TTAGTAAAGGTTTTAAATCA+TGG | - | chr3.4:78753863-78753882 | MS.gene045378:intron | 20.0% |
| ! | AACCTATATATGCAAAAACT+AGG | + | chr3.4:78753434-78753453 | None:intergenic | 25.0% |
| ! | AAGAAACATACAAAAGAACA+TGG | + | chr3.4:78753628-78753647 | None:intergenic | 25.0% |
| ! | ATACGTTATTATATCTCTCT+AGG | - | chr3.4:78752583-78752602 | MS.gene045378:CDS | 25.0% |
| ! | ATTCATATTTGTATGAACCA+CGG | - | chr3.4:78752281-78752300 | MS.gene045378:intron | 25.0% |
| ! | TACCTTAAACATTATTATGC+TGG | + | chr3.4:78753751-78753770 | None:intergenic | 25.0% |
| ! | TTCTTTACATTAGTTGTGAT+AGG | - | chr3.4:78753532-78753551 | MS.gene045378:CDS | 25.0% |
| !!! | AAGGTTTTAAATCATGGTAA+CGG | - | chr3.4:78753869-78753888 | MS.gene045378:intron | 25.0% |
| !!! | ATCCTAGTTTTTGCATATAT+AGG | - | chr3.4:78753429-78753448 | MS.gene045378:intron | 25.0% |
| !!! | ATGAGTTTTAACTTTTAAGC+AGG | + | chr3.4:78752507-78752526 | None:intergenic | 25.0% |
| !!! | CTCAAAAGTATCATGAATTA+AGG | - | chr3.4:78753376-78753395 | MS.gene045378:intron | 25.0% |
| !!! | CTTTGAAACTTTCATTTGAA+GGG | - | chr3.4:78753479-78753498 | MS.gene045378:CDS | 25.0% |
| !!! | GTACTTTTTGAAGCTTTAAT+TGG | - | chr3.4:78753069-78753088 | MS.gene045378:intron | 25.0% |
| AAGTTATGATGTCTCTACAA+CGG | + | chr3.4:78753961-78753980 | None:intergenic | 30.0% | |
| AGTTTAAGTGAGATGCATTA+TGG | - | chr3.4:78753096-78753115 | MS.gene045378:intron | 30.0% | |
| CTTCACAAAACTAAGGATAT+GGG | - | chr3.4:78754144-78754163 | MS.gene045378:CDS | 30.0% | |
| GTAAACATGACATAGTAAAC+CGG | + | chr3.4:78753711-78753730 | None:intergenic | 30.0% | |
| TATTGTATACTCTTGCTTGA+TGG | - | chr3.4:78753223-78753242 | MS.gene045378:CDS | 30.0% | |
| TCTCTCATGAATGAATGAAT+AGG | - | chr3.4:78753197-78753216 | MS.gene045378:intron | 30.0% | |
| TTAAAAAAGCTGCCACTAAT+GGG | - | chr3.4:78752133-78752152 | MS.gene045378:CDS | 30.0% | |
| TTTGCAATTGGGTTTAGTAA+AGG | - | chr3.4:78753850-78753869 | MS.gene045378:intron | 30.0% | |
| TTTGTTGGCAATTTGCAATT+GGG | - | chr3.4:78753839-78753858 | MS.gene045378:intron | 30.0% | |
| ! | AGGATCTTTAAGTTTGTAGA+AGG | + | chr3.4:78753414-78753433 | None:intergenic | 30.0% |
| ! | GGTTTGTGACAATTTTATCT+GGG | - | chr3.4:78754112-78754131 | MS.gene045378:intron | 30.0% |
| ! | GTGAGTGATTTTCTATCTTA+TGG | - | chr3.4:78752326-78752345 | MS.gene045378:intron | 30.0% |
| ! | TAACTTTTAAGCAGGAAGTT+CGG | + | chr3.4:78752499-78752518 | None:intergenic | 30.0% |
| ! | TGATATCACATTAGTGTTGA+AGG | + | chr3.4:78753688-78753707 | None:intergenic | 30.0% |
| ! | TTTAATCTGGGATACTATTG+TGG | - | chr3.4:78753649-78753668 | MS.gene045378:intron | 30.0% |
| ! | TTTTCTTCACAGTGATTGTT+GGG | - | chr3.4:78752722-78752741 | MS.gene045378:CDS | 30.0% |
| !! | GCTTTGAAACTTTCATTTGA+AGG | - | chr3.4:78753478-78753497 | MS.gene045378:CDS | 30.0% |
| !! | GTTCTAAAGGAATTCATTTC+TGG | - | chr3.4:78753127-78753146 | MS.gene045378:intron | 30.0% |
| !! | TCAAGTAGTTGATTTGCAAA+AGG | + | chr3.4:78753564-78753583 | None:intergenic | 30.0% |
| !! | TTAAAGCTTCAAAAAGTACC+TGG | + | chr3.4:78753068-78753087 | None:intergenic | 30.0% |
| !!! | TATGGTCTTTTTGGTTCTAA+AGG | - | chr3.4:78753114-78753133 | MS.gene045378:intron | 30.0% |
| !!! | TCCTTATTTTCGTTTTTGCA+CGG | - | chr3.4:78753261-78753280 | MS.gene045378:CDS | 30.0% |
| AAAGAGAGATTGCATGTCTT+TGG | - | chr3.4:78752933-78752952 | MS.gene045378:intron | 35.0% | |
| ACAAAGACCAATAACGTTGT+CGG | + | chr3.4:78752055-78752074 | None:intergenic | 35.0% | |
| ACATCATAACTTTGATGTCG+CGG | - | chr3.4:78753969-78753988 | MS.gene045378:CDS | 35.0% | |
| ATTCCTCCTTCACAAAACTA+AGG | - | chr3.4:78754137-78754156 | MS.gene045378:CDS | 35.0% | |
| CAACAATCACTGTGAAGAAA+AGG | + | chr3.4:78752723-78752742 | None:intergenic | 35.0% | |
| CAACACTAATGTGATATCAC+CGG | - | chr3.4:78753689-78753708 | MS.gene045378:intron | 35.0% | |
| CACATGCAATTGAACAAGAT+TGG | + | chr3.4:78752377-78752396 | None:intergenic | 35.0% | |
| CCTTCACAAAACTAAGGATA+TGG | - | chr3.4:78754143-78754162 | MS.gene045378:CDS | 35.0% | |
| CGCCAGCATAATAATGTTTA+AGG | - | chr3.4:78753746-78753765 | MS.gene045378:intron | 35.0% | |
| CGGCAATATAACTGTCAATT+AGG | + | chr3.4:78753941-78753960 | None:intergenic | 35.0% | |
| CTACTTGAACAAGGTATGTA+CGG | - | chr3.4:78753576-78753595 | MS.gene045378:intron | 35.0% | |
| CTTAAAAAAGCTGCCACTAA+TGG | - | chr3.4:78752132-78752151 | MS.gene045378:CDS | 35.0% | |
| CTTTGTTGGCAATTTGCAAT+TGG | - | chr3.4:78753838-78753857 | MS.gene045378:intron | 35.0% | |
| GCAAATCAACTACTTGAACA+AGG | - | chr3.4:78753567-78753586 | MS.gene045378:intron | 35.0% | |
| TAACGTATATAGCACGTGAT+TGG | + | chr3.4:78752571-78752590 | None:intergenic | 35.0% | |
| TATAAAGACAACCGTCTTGA+TGG | - | chr3.4:78754023-78754042 | MS.gene045378:intron | 35.0% | |
| TCCAACATAAACAACCAGAT+GGG | + | chr3.4:78753300-78753319 | None:intergenic | 35.0% | |
| TCCGTGCAAAAACGAAAATA+AGG | + | chr3.4:78753265-78753284 | None:intergenic | 35.0% | |
| TCTTAGCAGTATTGTTAGGA+CGG | + | chr3.4:78754209-78754228 | None:intergenic | 35.0% | |
| TGAAGAAAGAGAGATTTCTG+CGG | + | chr3.4:78754178-78754197 | None:intergenic | 35.0% | |
| TGGAATATTTCAATGTGCCT+TGG | + | chr3.4:78753786-78753805 | None:intergenic | 35.0% | |
| TGTTGGAATATGTTCTCTCA+CGG | - | chr3.4:78753313-78753332 | MS.gene045378:CDS | 35.0% | |
| TTCATTCTGTCAAGGAAGTA+TGG | - | chr3.4:78753027-78753046 | MS.gene045378:CDS | 35.0% | |
| TTCCAACATAAACAACCAGA+TGG | + | chr3.4:78753301-78753320 | None:intergenic | 35.0% | |
| TTTCTTCACAGTGATTGTTG+GGG | - | chr3.4:78752723-78752742 | MS.gene045378:CDS | 35.0% | |
| ! | AACTTTTAAGCAGGAAGTTC+GGG | + | chr3.4:78752498-78752517 | None:intergenic | 35.0% |
| ! | CTGTCTTCAAGCATTTTCAT+TGG | - | chr3.4:78752081-78752100 | MS.gene045378:CDS | 35.0% |
| ! | CTTTTCTTCACAGTGATTGT+TGG | - | chr3.4:78752721-78752740 | MS.gene045378:CDS | 35.0% |
| ! | GAGATGCATTATGGTCTTTT+TGG | - | chr3.4:78753105-78753124 | MS.gene045378:intron | 35.0% |
| ! | GGGTTTGTGACAATTTTATC+TGG | - | chr3.4:78754111-78754130 | MS.gene045378:intron | 35.0% |
| !! | AGGTAACTTGTTACATTCCA+AGG | - | chr3.4:78753766-78753785 | MS.gene045378:intron | 35.0% |
| !! | ATTCAGCCTTGTTTCTCTAA+AGG | + | chr3.4:78753905-78753924 | None:intergenic | 35.0% |
| !! | CAACGTTATTGGTCTTTGTT+TGG | - | chr3.4:78752056-78752075 | MS.gene045378:CDS | 35.0% |
| !! | TTCAGCCTTGTTTCTCTAAA+GGG | + | chr3.4:78753904-78753923 | None:intergenic | 35.0% |
| !!! | ATTTATTTTGGCTGCAGGAA+TGG | - | chr3.4:78754049-78754068 | MS.gene045378:intron | 35.0% |
| !!! | CCATATCCTTAGTTTTGTGA+AGG | + | chr3.4:78754146-78754165 | None:intergenic | 35.0% |
| !!! | GAGCTTTAAGCATCATTTTC+AGG | - | chr3.4:78752803-78752822 | MS.gene045378:CDS | 35.0% |
| !!! | GGTTTATTTATTTTGGCTGC+AGG | - | chr3.4:78754044-78754063 | MS.gene045378:intron | 35.0% |
| !!! | TATCCTTAGTTTTGTGAAGG+AGG | + | chr3.4:78754143-78754162 | None:intergenic | 35.0% |
| !!! | TTTATTTTGGCTGCAGGAAT+GGG | - | chr3.4:78754050-78754069 | MS.gene045378:intron | 35.0% |
| ACCCATCTGGTTGTTTATGT+TGG | - | chr3.4:78753296-78753315 | MS.gene045378:CDS | 40.0% | |
| ATATCCTCCGACAACGTTAT+TGG | - | chr3.4:78752045-78752064 | MS.gene045378:CDS | 40.0% | |
| ATGATGCTTAAAGCTCCCAA+AGG | + | chr3.4:78752799-78752818 | None:intergenic | 40.0% | |
| CATATTTGTATGAACCACGG+TGG | - | chr3.4:78752284-78752303 | MS.gene045378:intron | 40.0% | |
| CATTATTATGCTGGCGATGA+TGG | + | chr3.4:78753742-78753761 | None:intergenic | 40.0% | |
| GAAGAAAGAGAGATTTCTGC+GGG | + | chr3.4:78754177-78754196 | None:intergenic | 40.0% | |
| GAATGAATGACTCTCTCATG+TGG | + | chr3.4:78753014-78753033 | None:intergenic | 40.0% | |
| GAGAGTCATTCATTCTGTCA+AGG | - | chr3.4:78753019-78753038 | MS.gene045378:CDS | 40.0% | |
| GGAAATTCTGCACAATGAGA+TGG | + | chr3.4:78752609-78752628 | None:intergenic | 40.0% | |
| GGTGTCTTAGCAGTATTGTT+AGG | + | chr3.4:78754213-78754232 | None:intergenic | 40.0% | |
| GTTATGTGTGTCAAAGCAGT+AGG | - | chr3.4:78753451-78753470 | MS.gene045378:intron | 40.0% | |
| GTTGGAATATGTTCTCTCAC+GGG | - | chr3.4:78753314-78753333 | MS.gene045378:CDS | 40.0% | |
| TACTACTAACATTCGCCTGT+CGG | + | chr3.4:78752446-78752465 | None:intergenic | 40.0% | |
| TGTATACTCTTGCTTGATGG+TGG | - | chr3.4:78753226-78753245 | MS.gene045378:CDS | 40.0% | |
| ! | ACTTTTAAGCAGGAAGTTCG+GGG | + | chr3.4:78752497-78752516 | None:intergenic | 40.0% |
| !! | AGATTGTGACGGAGTTTTGT+GGG | - | chr3.4:78754091-78754110 | MS.gene045378:intron | 40.0% |
| !! | ATCTGCATGTGTAGCTTTGT+TGG | - | chr3.4:78753824-78753843 | MS.gene045378:intron | 40.0% |
| !! | TCTTGATTTTGATCAGCCAC+AGG | - | chr3.4:78752253-78752272 | MS.gene045378:intron | 40.0% |
| !! | TTCGTTTTTGCACGGAGTTA+TGG | - | chr3.4:78753269-78753288 | MS.gene045378:CDS | 40.0% |
| !!! | TGTGCTGTATTTTTTCCGAC+AGG | - | chr3.4:78752428-78752447 | MS.gene045378:intron | 40.0% |
| AAAGGAGTTACAAGGATGGC+AGG | + | chr3.4:78752781-78752800 | None:intergenic | 45.0% | |
| AAGACCAATAACGTTGTCGG+AGG | + | chr3.4:78752052-78752071 | None:intergenic | 45.0% | |
| AAGCTCCCAAAGGAGTTACA+AGG | + | chr3.4:78752789-78752808 | None:intergenic | 45.0% | |
| AAGGTATGTACGGTTGAGTG+TGG | - | chr3.4:78753586-78753605 | MS.gene045378:intron | 45.0% | |
| ACCTGCTCTATTCCCATTAG+TGG | + | chr3.4:78752148-78752167 | None:intergenic | 45.0% | |
| AGATGCGTCTCAGATTGTGA+CGG | - | chr3.4:78754080-78754099 | MS.gene045378:intron | 45.0% | |
| ATTTGTATGAACCACGGTGG+TGG | - | chr3.4:78752287-78752306 | MS.gene045378:intron | 45.0% | |
| CAAATATGAATGCCCTCCTG+TGG | + | chr3.4:78752272-78752291 | None:intergenic | 45.0% | |
| GATACTATTGTGGCAGGCTT+TGG | - | chr3.4:78753659-78753678 | MS.gene045378:intron | 45.0% | |
| GCCATCCTTGTAACTCCTTT+GGG | - | chr3.4:78752781-78752800 | MS.gene045378:CDS | 45.0% | |
| TCCCAAAGGAGTTACAAGGA+TGG | + | chr3.4:78752785-78752804 | None:intergenic | 45.0% | |
| TGCCATCCTTGTAACTCCTT+TGG | - | chr3.4:78752780-78752799 | MS.gene045378:CDS | 45.0% | |
| TTCTCTCACGGGCTCAATTA+CGG | - | chr3.4:78753325-78753344 | MS.gene045378:CDS | 45.0% | |
| TTTGTATGAACCACGGTGGT+GGG | - | chr3.4:78752288-78752307 | MS.gene045378:intron | 45.0% | |
| ! | ATCTGGGATACTATTGTGGC+AGG | - | chr3.4:78753653-78753672 | MS.gene045378:intron | 45.0% |
| ! | GTCAGCCCTTTAGAGAAACA+AGG | - | chr3.4:78753896-78753915 | MS.gene045378:intron | 45.0% |
| !! | CAGATTGTGACGGAGTTTTG+TGG | - | chr3.4:78754090-78754109 | MS.gene045378:intron | 45.0% |
| !! | GATTTTGATCAGCCACAGGA+GGG | - | chr3.4:78752257-78752276 | MS.gene045378:intron | 45.0% |
| !! | TGATTTTGATCAGCCACAGG+AGG | - | chr3.4:78752256-78752275 | MS.gene045378:intron | 45.0% |
| GAGTTATGGACAGACCCATC+TGG | - | chr3.4:78753283-78753302 | MS.gene045378:CDS | 50.0% | |
| GCAGTATTGTTAGGACGGTG+TGG | + | chr3.4:78754204-78754223 | None:intergenic | 50.0% | |
| GCCAACGGAACTACCTATGT+GGG | - | chr3.4:78752544-78752563 | MS.gene045378:CDS | 50.0% | |
| GCCACTAATGGGAATAGAGC+AGG | - | chr3.4:78752144-78752163 | MS.gene045378:CDS | 50.0% | |
| TCCCACATAGGTAGTTCCGT+TGG | + | chr3.4:78752548-78752567 | None:intergenic | 50.0% | |
| TGTACGGTTGAGTGTGGAAG+TGG | - | chr3.4:78753592-78753611 | MS.gene045378:intron | 50.0% | |
| TTGCATGTCTTTGGCGTGCT+TGG | - | chr3.4:78752942-78752961 | MS.gene045378:intron | 50.0% | |
| ! | GCTGGCGATGATGGTAAATG+AGG | + | chr3.4:78753733-78753752 | None:intergenic | 50.0% |
| ! | GTTTCTCTAAAGGGCTGACG+CGG | + | chr3.4:78753895-78753914 | None:intergenic | 50.0% |
| !! | TGGCAACTTGCTACAGAACC+AGG | - | chr3.4:78753047-78753066 | MS.gene045378:CDS | 50.0% |
| AGTTCCGTTGGCGAGCTAAG+AGG | + | chr3.4:78752536-78752555 | None:intergenic | 55.0% | |
| CGCCAACGGAACTACCTATG+TGG | - | chr3.4:78752543-78752562 | MS.gene045378:CDS | 55.0% | |
| GATGTGCTCTCTGTGTGGTG+GGG | - | chr3.4:78752964-78752983 | MS.gene045378:CDS | 55.0% | |
| GCTTGGATGTGCTCTCTGTG+TGG | - | chr3.4:78752959-78752978 | MS.gene045378:CDS | 55.0% | |
| GGATGTGCTCTCTGTGTGGT+GGG | - | chr3.4:78752963-78752982 | MS.gene045378:CDS | 55.0% | |
| GGTACCTCTTAGCTCGCCAA+CGG | - | chr3.4:78752529-78752548 | MS.gene045378:CDS | 55.0% | |
| TGGATGTGCTCTCTGTGTGG+TGG | - | chr3.4:78752962-78752981 | MS.gene045378:CDS | 55.0% | |
| ! | GCACGTGATTGGTCCCACAT+AGG | + | chr3.4:78752560-78752579 | None:intergenic | 55.0% |
| !! | CTCTTGCTTGATGGTGGCGC+TGG | - | chr3.4:78753232-78753251 | MS.gene045378:CDS | 60.0% |
| !! | TATGAACCACGGTGGTGGGC+TGG | - | chr3.4:78752292-78752311 | MS.gene045378:intron | 60.0% |
| GTCATTCCAGCCCACCACCG+TGG | + | chr3.4:78752301-78752320 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 78752039 | 78754251 | 78752039 | ID=MS.gene045378 |
| chr3.4 | mRNA | 78752039 | 78754251 | 78752039 | ID=MS.gene045378.t1;Parent=MS.gene045378 |
| chr3.4 | exon | 78754125 | 78754251 | 78754125 | ID=MS.gene045378.t1.exon1;Parent=MS.gene045378.t1 |
| chr3.4 | CDS | 78754125 | 78754251 | 78754125 | ID=cds.MS.gene045378.t1;Parent=MS.gene045378.t1 |
| chr3.4 | exon | 78753965 | 78754021 | 78753965 | ID=MS.gene045378.t1.exon2;Parent=MS.gene045378.t1 |
| chr3.4 | CDS | 78753965 | 78754021 | 78753965 | ID=cds.MS.gene045378.t1;Parent=MS.gene045378.t1 |
| chr3.4 | exon | 78753466 | 78753556 | 78753466 | ID=MS.gene045378.t1.exon3;Parent=MS.gene045378.t1 |
| chr3.4 | CDS | 78753466 | 78753556 | 78753466 | ID=cds.MS.gene045378.t1;Parent=MS.gene045378.t1 |
| chr3.4 | exon | 78753222 | 78753382 | 78753222 | ID=MS.gene045378.t1.exon4;Parent=MS.gene045378.t1 |
| chr3.4 | CDS | 78753222 | 78753382 | 78753222 | ID=cds.MS.gene045378.t1;Parent=MS.gene045378.t1 |
| chr3.4 | exon | 78752944 | 78753071 | 78752944 | ID=MS.gene045378.t1.exon5;Parent=MS.gene045378.t1 |
| chr3.4 | CDS | 78752944 | 78753071 | 78752944 | ID=cds.MS.gene045378.t1;Parent=MS.gene045378.t1 |
| chr3.4 | exon | 78752702 | 78752839 | 78752702 | ID=MS.gene045378.t1.exon6;Parent=MS.gene045378.t1 |
| chr3.4 | CDS | 78752702 | 78752839 | 78752702 | ID=cds.MS.gene045378.t1;Parent=MS.gene045378.t1 |
| chr3.4 | exon | 78752523 | 78752615 | 78752523 | ID=MS.gene045378.t1.exon7;Parent=MS.gene045378.t1 |
| chr3.4 | CDS | 78752523 | 78752615 | 78752523 | ID=cds.MS.gene045378.t1;Parent=MS.gene045378.t1 |
| chr3.4 | exon | 78752039 | 78752224 | 78752039 | ID=MS.gene045378.t1.exon8;Parent=MS.gene045378.t1 |
| chr3.4 | CDS | 78752039 | 78752224 | 78752039 | ID=cds.MS.gene045378.t1;Parent=MS.gene045378.t1 |
| Gene Sequence |
| Protein sequence |
