AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002040.t1 MTR_2g006070 99.115 339 3 0 2 340 3 341 0.0 686
MS.gene002040.t1 MTR_2g006070 99.174 242 2 0 2 243 3 244 3.52e-174 483
MS.gene002040.t1 MTR_8g081650 70.569 299 88 0 11 309 2 300 1.43e-154 437
MS.gene002040.t1 MTR_3g083960 66.163 331 101 2 11 341 2 321 9.60e-153 432
MS.gene002040.t1 MTR_4g074050 62.752 298 111 0 14 311 4 301 1.64e-144 411
MS.gene002040.t1 MTR_5g090020 65.574 305 104 1 11 314 2 306 1.09e-143 410
MS.gene002040.t1 MTR_2g006070 99.492 197 1 0 2 198 3 199 1.75e-139 394
MS.gene002040.t1 MTR_8g095060 63.729 295 107 0 12 306 1 295 9.21e-138 395
MS.gene002040.t1 MTR_3g097220 62.799 293 109 0 13 305 3 295 4.19e-137 393
MS.gene002040.t1 MTR_3g097220 62.799 293 109 0 13 305 3 295 1.90e-136 392
MS.gene002040.t1 MTR_5g090020 64.898 245 86 0 70 314 17 261 1.70e-109 322
MS.gene002040.t1 MTR_3g097220 61.111 198 77 0 108 305 1 198 4.08e-86 260
MS.gene002040.t1 MTR_5g049870 54.545 66 26 1 249 314 166 227 3.35e-14 72.0
MS.gene002040.t1 MTR_6g033100 21.451 317 213 4 45 328 38 351 4.16e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002040.t1 AT1G71900 78.736 348 62 3 1 341 1 343 0.0 568
MS.gene002040.t1 AT1G34470 78.754 353 62 5 1 341 1 352 0.0 547
MS.gene002040.t1 AT1G71900 75.504 347 76 3 1 339 1 346 0.0 538
MS.gene002040.t1 AT4G09640 75.766 359 69 4 1 341 1 359 0.0 514
MS.gene002040.t1 AT4G13800 70.064 314 93 1 10 322 2 315 2.12e-152 432
MS.gene002040.t1 AT4G13800 70.064 314 93 1 10 322 2 315 2.12e-152 432
MS.gene002040.t1 AT4G13800 70.064 314 93 1 10 322 2 315 2.12e-152 432
MS.gene002040.t1 AT4G13800 70.064 314 93 1 10 322 2 315 2.12e-152 432
MS.gene002040.t1 AT4G38730 62.540 315 118 0 12 326 1 315 1.22e-146 417
MS.gene002040.t1 AT2G21120 59.633 327 130 1 12 336 1 327 2.67e-146 416
MS.gene002040.t1 AT3G23870 70.492 305 90 0 10 314 2 306 1.51e-141 404
MS.gene002040.t1 AT3G23870 70.492 305 90 0 10 314 2 306 1.51e-141 404
MS.gene002040.t1 AT3G23870 70.492 305 90 0 10 314 2 306 1.51e-141 404
MS.gene002040.t1 AT3G23870 70.492 305 90 0 10 314 2 306 1.51e-141 404
MS.gene002040.t1 AT4G13800 71.321 265 76 0 10 274 2 266 2.91e-128 368
MS.gene002040.t1 AT4G13800 71.321 265 76 0 10 274 2 266 2.91e-128 368
MS.gene002040.t1 AT4G13800 68.908 238 74 0 10 247 2 239 2.68e-108 316
MS.gene002040.t1 AT4G13800 68.908 238 74 0 10 247 2 239 2.68e-108 316
MS.gene002040.t1 AT4G13800 68.908 238 74 0 10 247 2 239 2.68e-108 316
MS.gene002040.t1 AT4G13800 68.908 238 74 0 10 247 2 239 2.68e-108 316
MS.gene002040.t1 AT3G23870 64.840 219 77 0 96 314 8 226 1.10e-102 302
MS.gene002040.t1 AT3G26670 21.070 299 200 4 59 323 50 346 3.76e-12 67.4
MS.gene002040.t1 AT3G26670 21.070 299 200 4 59 323 50 346 3.76e-12 67.4
MS.gene002040.t1 AT3G26670 21.070 299 200 4 59 323 50 346 3.76e-12 67.4
MS.gene002040.t1 AT3G26670 21.070 299 200 4 59 323 50 346 3.76e-12 67.4

Find 90 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAGACAGAGTTAACTTTA+TGG 0.185357 2.3:+75858159 None:intergenic
CCAAATGAATTATTTAAATA+AGG 0.190611 2.3:-75858071 MS.gene002040:intron
TGTGAACATAACATAATAAA+TGG 0.201399 2.3:+75857418 None:intergenic
GGCCAGTGTTATCATGTTTA+AGG 0.207394 2.3:-75857381 MS.gene002040:intron
GTCTCTCCCGTAAGATAATA+TGG 0.212620 2.3:+75858666 None:intergenic
TCATGGATTCTTGCCTTCTA+AGG 0.229929 2.3:+75855672 None:intergenic
CTACATATATTTGGAGTTCT+TGG 0.240196 2.3:-75858644 MS.gene002040:CDS
CGGGAGAGACTACATATATT+TGG 0.245641 2.3:-75858653 MS.gene002040:CDS
AAATGCATATGCTGCAAAAT+TGG 0.267357 2.3:+75858822 None:intergenic
CCTTATTTAAATAATTCATT+TGG 0.278708 2.3:+75858071 None:intergenic
TTCCACTTCATTCCTCTATA+TGG 0.280932 2.3:-75858374 MS.gene002040:CDS
TTGAATCAGTGCCAGAAGTA+TGG 0.285857 2.3:-75858559 MS.gene002040:CDS
TGCATTTGCTCCAGCTATAT+TGG 0.303829 2.3:-75858806 MS.gene002040:CDS
GTGCTCTTAGCATTATTATC+AGG 0.309781 2.3:-75858771 MS.gene002040:intron
GCCATAAAGTTAACTCTGTC+TGG 0.320249 2.3:-75858160 MS.gene002040:CDS
GGGTTTGTGACGATACTTTC+AGG 0.333057 2.3:-75855937 MS.gene002040:CDS
ATCGGCGTTTGTTCCCTTGT+AGG 0.337139 2.3:-75858329 MS.gene002040:CDS
AGCTAATTTACCCTCAAACT+TGG 0.354302 2.3:-75858129 MS.gene002040:CDS
CTCTTGCCCATATTATCTTA+CGG 0.372307 2.3:-75858673 MS.gene002040:CDS
TTGAAGGGATTCCCCTTAGA+AGG 0.372897 2.3:-75855685 MS.gene002040:CDS
TCTTGCCCATATTATCTTAC+GGG 0.384489 2.3:-75858672 MS.gene002040:CDS
CTTATTTAAATAATTCATTT+GGG 0.394380 2.3:+75858072 None:intergenic
TCTGCACAAGACTAAGGATA+TGG 0.397502 2.3:-75855905 MS.gene002040:CDS
GTTATGAGTGTTAAAGCTCT+TGG 0.407571 2.3:-75858187 MS.gene002040:CDS
GAAGTGGAAGACTAGAATAA+AGG 0.410967 2.3:+75858388 None:intergenic
GCTAGCACCGATGAAGAAAC+TGG 0.411958 2.3:+75860696 None:intergenic
GGTTGCGCTTTGTGTGTTGT+GGG 0.447928 2.3:-75858623 MS.gene002040:CDS
CTTTCATCCAGTTTCTTCAT+CGG 0.449336 2.3:-75860703 MS.gene002040:CDS
TATAAACCATTATGTGTGTC+TGG 0.458957 2.3:+75858351 None:intergenic
CGTACTTGTATGAACCACTT+TGG 0.464077 2.3:-75859481 MS.gene002040:CDS
ACACACATAATGGTTTATAT+CGG 0.464257 2.3:-75858347 MS.gene002040:CDS
TGGTTGCGCTTTGTGTGTTG+TGG 0.474355 2.3:-75858624 MS.gene002040:CDS
ATAGCAAGATCCCATACTTC+TGG 0.477024 2.3:+75858548 None:intergenic
ATATGGCCAGACACACATAA+TGG 0.478390 2.3:-75858357 MS.gene002040:CDS
CATGGATTCTTGCCTTCTAA+GGG 0.480099 2.3:+75855673 None:intergenic
GCTAATTTACCCTCAAACTT+GGG 0.485071 2.3:-75858128 MS.gene002040:CDS
GTGAACATAACATAATAAAT+GGG 0.492015 2.3:+75857419 None:intergenic
TGGGATCTTGCTATGGATCC+AGG 0.492129 2.3:-75858539 MS.gene002040:intron
GCTATATTGGTCACTCCGCT+TGG 0.493806 2.3:-75858793 MS.gene002040:CDS
TCTACATGCTCCTCAAGAAC+GGG 0.499881 2.3:-75858585 MS.gene002040:CDS
TTCCCTTGTAGGCTCCCTAT+CGG 0.502213 2.3:-75858318 MS.gene002040:intron
CTTGTTATCAGGACTGGGAT+AGG 0.504831 2.3:-75855993 MS.gene002040:intron
TGAATCAGTGCCAGAAGTAT+GGG 0.505992 2.3:-75858558 MS.gene002040:CDS
AATATATCATGGCGATCTCA+TGG 0.507463 2.3:+75855655 None:intergenic
CAAGTTATCACAGAAATATG+TGG 0.508255 2.3:-75855958 MS.gene002040:CDS
ACTTGTATGAACCACTTTGG+TGG 0.510370 2.3:-75859478 MS.gene002040:CDS
TGGCGAGTTCCTCTTCTAGT+TGG 0.513230 2.3:-75860771 MS.gene002040:CDS
GATGAAGAAACTGGATGAAA+GGG 0.513895 2.3:+75860705 None:intergenic
ATACCGATAGGGAGCCTACA+AGG 0.517647 2.3:+75858315 None:intergenic
ATTTCTGTGATAACTTGTGT+TGG 0.520381 2.3:+75855964 None:intergenic
TCTCTCCCGTAAGATAATAT+GGG 0.523037 2.3:+75858667 None:intergenic
AGCGGAGTGACCAATATAGC+TGG 0.526859 2.3:+75858796 None:intergenic
CTTGTATGAACCACTTTGGT+GGG 0.529827 2.3:-75859477 MS.gene002040:CDS
ATGTGTGTCTGGCCATATAG+AGG 0.529961 2.3:+75858362 None:intergenic
TCCTCTTCTAGTTGGCGAGA+GGG 0.533762 2.3:-75860763 MS.gene002040:CDS
GGCACTGGATACTTTCAATA+CGG 0.534954 2.3:-75857453 MS.gene002040:CDS
TTCTACATGCTCCTCAAGAA+CGG 0.536732 2.3:-75858586 MS.gene002040:CDS
GATTCAATTTCCCGTTCTTG+AGG 0.538754 2.3:+75858575 None:intergenic
TGCTCTGATTCCACTGGCAC+CGG 0.540042 2.3:+75860642 None:intergenic
TCCCTCTCGCCAACTAGAAG+AGG 0.541854 2.3:+75860762 None:intergenic
CCATAAAGTTAACTCTGTCT+GGG 0.546365 2.3:-75858159 MS.gene002040:CDS
CGATGAAGAAACTGGATGAA+AGG 0.548392 2.3:+75860704 None:intergenic
GGTGCCAGTGGAATCAGAGC+AGG 0.559422 2.3:-75860640 MS.gene002040:intron
ATGTCCTCTGATAATATCAA+AGG 0.560524 2.3:-75860739 MS.gene002040:CDS
AGAAGTATGGGATCTTGCTA+TGG 0.564419 2.3:-75858546 MS.gene002040:CDS
TACCTTAAACATGATAACAC+TGG 0.564492 2.3:+75857379 None:intergenic
GATGGCTTTGATGATGTTGA+AGG 0.564589 2.3:-75855701 MS.gene002040:CDS
TATGAACCACTTTGGTGGGT+GGG 0.572479 2.3:-75859473 MS.gene002040:CDS
AGAACCTGCTCTGATTCCAC+TGG 0.576009 2.3:+75860636 None:intergenic
ACTTAATAAGCATTCAGAAG+AGG 0.578484 2.3:-75855723 MS.gene002040:CDS
AAGTTATCACAGAAATATGT+GGG 0.587076 2.3:-75855957 MS.gene002040:CDS
AATAAGCATTCAGAAGAGGA+TGG 0.595448 2.3:-75855719 MS.gene002040:CDS
GTATGAACCACTTTGGTGGG+TGG 0.597992 2.3:-75859474 MS.gene002040:CDS
ATGGCTTTGATGATGTTGAA+GGG 0.603839 2.3:-75855700 MS.gene002040:CDS
GATGATGAGACATACCGATA+GGG 0.605404 2.3:+75858304 None:intergenic
TTCCTCTTCTAGTTGGCGAG+AGG 0.609756 2.3:-75860764 MS.gene002040:CDS
TAAACCTTTGATATTATCAG+AGG 0.611108 2.3:+75860735 None:intergenic
CATGATAACACTGGCCACGA+TGG 0.614833 2.3:+75857388 None:intergenic
GTTGCGCTTTGTGTGTTGTG+GGG 0.616455 2.3:-75858622 MS.gene002040:CDS
ATCATGCCCACCCACCAAAG+TGG 0.624074 2.3:+75859467 None:intergenic
GGCCATATAGAGGAATGAAG+TGG 0.624973 2.3:+75858372 None:intergenic
TTATATGTTACAGGAAGTGG+AGG 0.627071 2.3:-75859509 MS.gene002040:intron
AGAAACTGGATGAAAGGGCG+AGG 0.630061 2.3:+75860710 None:intergenic
GGATACTTTCAATACGGCAG+TGG 0.630256 2.3:-75857447 MS.gene002040:CDS
AAGACTAAGGATATGGCAGA+AGG 0.630919 2.3:-75855898 MS.gene002040:intron
ATGGATTCTTGCCTTCTAAG+GGG 0.654525 2.3:+75855674 None:intergenic
TACCGATAGGGAGCCTACAA+GGG 0.655917 2.3:+75858316 None:intergenic
GTTCACAACATTAACCATCG+TGG 0.718448 2.3:-75857402 MS.gene002040:CDS
GGTAGCTGTTATAACCAATG+CGG 0.739413 2.3:+75858409 None:intergenic
ATAATGCTAAGAGCACCAAG+CGG 0.786625 2.3:+75858778 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATTTAAATAATTCATTT+GGG + chr2.3:75858364-75858383 None:intergenic 10.0%
!! TTAAATATGTTAAAATGAAA+TGG - chr2.3:75856707-75856726 MS.gene002040:intron 10.0%
!! TTAAATATGTTAACATAAAA+TGG - chr2.3:75856502-75856521 MS.gene002040:intron 10.0%
!!! AATACATAAAAATGATTTTT+CGG - chr2.3:75858454-75858473 MS.gene002040:intron 10.0%
!! ATAAATAATGATGTAAAACA+TGG + chr2.3:75858615-75858634 None:intergenic 15.0%
!! CCAAATGAATTATTTAAATA+AGG - chr2.3:75858362-75858381 MS.gene002040:CDS 15.0%
!! CTTAAAAAAAATCAAAATGA+AGG + chr2.3:75860292-75860311 None:intergenic 15.0%
!!! ATGTTTTACATCATTATTTA+TGG - chr2.3:75858614-75858633 MS.gene002040:CDS 15.0%
!!! CCTTATTTAAATAATTCATT+TGG + chr2.3:75858365-75858384 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAT+TGG + chr2.3:75856581-75856600 None:intergenic 15.0%
!!! TCATTTTGATTTTTTTTAAG+AGG - chr2.3:75860292-75860311 MS.gene002040:intron 15.0%
!!! TTAATAATCATGTTTTAAGA+TGG + chr2.3:75860650-75860669 None:intergenic 15.0%
!!! TTTTTTCTTCTTTTTTTTGA+CGG - chr2.3:75859895-75859914 MS.gene002040:intron 15.0%
!! AACATTATACAAGTTTAGAT+AGG + chr2.3:75857196-75857215 None:intergenic 20.0%
!! AACCTTAACAAATCTTAATA+GGG - chr2.3:75857228-75857247 MS.gene002040:intron 20.0%
!! ACAATATAAATACAGAAAGA+AGG + chr2.3:75858208-75858227 None:intergenic 20.0%
!! ACTATAACATAAGTAAAATC+AGG + chr2.3:75860021-75860040 None:intergenic 20.0%
!! AGCTTCATTGTTAAAAAAAA+GGG - chr2.3:75855757-75855776 MS.gene002040:intron 20.0%
!! CATTTATTTATACCAACAAA+TGG - chr2.3:75857533-75857552 MS.gene002040:intron 20.0%
!! GAAAGAAGGAAAAAAATAAA+CGG + chr2.3:75858194-75858213 None:intergenic 20.0%
!! GTGAACATAACATAATAAAT+GGG + chr2.3:75859017-75859036 None:intergenic 20.0%
!! TAGCTTCATTGTTAAAAAAA+AGG - chr2.3:75855756-75855775 MS.gene002040:intron 20.0%
!! TGTGAACATAACATAATAAA+TGG + chr2.3:75859018-75859037 None:intergenic 20.0%
!! TTCAAAGAATTATATGTTAC+AGG - chr2.3:75856915-75856934 MS.gene002040:intron 20.0%
!! TTCTTGATGTTTACATTTAT+TGG - chr2.3:75858403-75858422 MS.gene002040:CDS 20.0%
!!! ACTTTTTTTTCTTCTTAATC+AGG - chr2.3:75858959-75858978 MS.gene002040:intron 20.0%
!!! GTAGAAGGATTTTTTTTTTT+TGG - chr2.3:75857365-75857384 MS.gene002040:intron 20.0%
!!! GTTTTTACCTTTTCTTTAAT+GGG - chr2.3:75855947-75855966 MS.gene002040:CDS 20.0%
!!! TAATTTTTGAAGTACCTTAA+TGG - chr2.3:75858426-75858445 MS.gene002040:CDS 20.0%
!!! TGAATATTAAACTTGTTATC+AGG - chr2.3:75860429-75860448 MS.gene002040:intron 20.0%
!!! TTATGTATTGTTTTCCATTA+AGG + chr2.3:75858443-75858462 None:intergenic 20.0%
!!! TTTTTCTTCTTTTTTTTGAC+GGG - chr2.3:75859896-75859915 MS.gene002040:intron 20.0%
!!! TTTTTTTACATTATCCAGAT+TGG - chr2.3:75859124-75859143 MS.gene002040:intron 20.0%
! AAAAAAATAAACGGAGAACT+GGG + chr2.3:75858185-75858204 None:intergenic 25.0%
! AAAGTTACCCATTAAAGAAA+AGG + chr2.3:75855957-75855976 None:intergenic 25.0%
! AAATCCTTCTACAATAAATC+TGG + chr2.3:75857357-75857376 None:intergenic 25.0%
! AACATTTCAAGATTGAAACA+TGG + chr2.3:75857923-75857942 None:intergenic 25.0%
! AAGTTATCACAGAAATATGT+GGG - chr2.3:75860476-75860495 MS.gene002040:intron 25.0%
! AATCATTACAAAGAAAGTTG+AGG + chr2.3:75859686-75859705 None:intergenic 25.0%
! ACACACATAATGGTTTATAT+CGG - chr2.3:75858086-75858105 MS.gene002040:CDS 25.0%
! ACATAATTCAGTGTAATCAT+AGG - chr2.3:75856600-75856619 MS.gene002040:intron 25.0%
! ACCTTAACAAATCTTAATAG+GGG - chr2.3:75857229-75857248 MS.gene002040:intron 25.0%
! AGTTTAACATTATCATGATC+AGG + chr2.3:75856408-75856427 None:intergenic 25.0%
! ATAGTTTCGAACTTATGTTT+AGG - chr2.3:75858805-75858824 MS.gene002040:CDS 25.0%
! ATCTTCAAATTAGCAAACAA+CGG + chr2.3:75860398-75860417 None:intergenic 25.0%
! ATGAATTTCACTAAATCATG+TGG + chr2.3:75859831-75859850 None:intergenic 25.0%
! ATGCATATAAATGCAAGTTT+AGG - chr2.3:75858746-75858765 MS.gene002040:intron 25.0%
! CAAACAGTTAAAAGATGAAA+AGG + chr2.3:75856014-75856033 None:intergenic 25.0%
! CAACTTTCATAAAATTGGAT+TGG - chr2.3:75855881-75855900 MS.gene002040:intron 25.0%
! CACGATAAAAATCAAAATGA+AGG + chr2.3:75860319-75860338 None:intergenic 25.0%
! CTTTCTGTATTTATATTGTC+AGG - chr2.3:75858209-75858228 MS.gene002040:intron 25.0%
! CTTTGGTACACATTAAAAAT+TGG - chr2.3:75860260-75860279 MS.gene002040:intron 25.0%
! GAACCTTAACAAATCTTAAT+AGG - chr2.3:75857227-75857246 MS.gene002040:intron 25.0%
! GACTTCAACTTTCATAAAAT+TGG - chr2.3:75855876-75855895 MS.gene002040:intron 25.0%
! GGATAATGTAAAAAAAGCTA+CGG + chr2.3:75859120-75859139 None:intergenic 25.0%
! GTTTATCCTATAATCTTTCT+AGG + chr2.3:75856237-75856256 None:intergenic 25.0%
! TAAACCTTTGATATTATCAG+AGG + chr2.3:75855701-75855720 None:intergenic 25.0%
! TAAATTAAGCTTACTCGTTT+AGG + chr2.3:75856052-75856071 None:intergenic 25.0%
! TAACAAGAAACACAAATATG+AGG + chr2.3:75856854-75856873 None:intergenic 25.0%
! TACATCATTATTTATGGAAG+AGG - chr2.3:75858620-75858639 MS.gene002040:CDS 25.0%
! TCTCAAATTATTATTGGTGT+CGG + chr2.3:75856575-75856594 None:intergenic 25.0%
! TCTTAACGATACTTATATAC+AGG - chr2.3:75859366-75859385 MS.gene002040:intron 25.0%
! TGAAACTTTAATCCATTTGT+TGG + chr2.3:75857548-75857567 None:intergenic 25.0%
! TGAATTTCACTAAATCATGT+GGG + chr2.3:75859830-75859849 None:intergenic 25.0%
! TGATACATGATAGAACATTA+TGG - chr2.3:75856298-75856317 MS.gene002040:intron 25.0%
! TGATCTATAGATTAATGAGT+TGG - chr2.3:75856266-75856285 MS.gene002040:intron 25.0%
! TTTAAATTAAGCAACCAATC+TGG + chr2.3:75859141-75859160 None:intergenic 25.0%
! TTTAATCGTCATGAAGAAAA+TGG - chr2.3:75856370-75856389 MS.gene002040:intron 25.0%
!! ACATTATCTATTTTGCATGA+TGG - chr2.3:75858524-75858543 MS.gene002040:intron 25.0%
!! CAATTTTTAATGTGTACCAA+AGG + chr2.3:75860262-75860281 None:intergenic 25.0%
!! GAAAAAAAGATTGTGTCTTT+TGG + chr2.3:75857984-75858003 None:intergenic 25.0%
!! GGTTTTTACCTTTTCTTTAA+TGG - chr2.3:75855946-75855965 MS.gene002040:CDS 25.0%
!! TATTTCTACATTCCAATCTA+TGG - chr2.3:75857464-75857483 MS.gene002040:intron 25.0%
!! TTCATAAAATTGGATTGGAT+TGG - chr2.3:75855886-75855905 MS.gene002040:intron 25.0%
!!! ACTTTAACTGTTTTTCAAAC+TGG - chr2.3:75855972-75855991 MS.gene002040:CDS 25.0%
!!! ATGAATGGAGTACTTATTTT+TGG - chr2.3:75859972-75859991 MS.gene002040:intron 25.0%
!!! CTTAAGATCTGCATTTTTTT+GGG - chr2.3:75855924-75855943 MS.gene002040:CDS 25.0%
!!! TCTTCTTGCTTTTAATGTAA+TGG - chr2.3:75859250-75859269 MS.gene002040:intron 25.0%
!!! TTAAGATCTGCATTTTTTTG+GGG - chr2.3:75855925-75855944 MS.gene002040:CDS 25.0%
!!! TTGTTTTCATGTTGTTTGTA+TGG - chr2.3:75856456-75856475 MS.gene002040:intron 25.0%
!!! TTTTCTTCTTTTTTTTGACG+GGG - chr2.3:75859897-75859916 MS.gene002040:intron 25.0%
!!! TTTTGTTGTGCTATTTGATA+TGG - chr2.3:75856134-75856153 MS.gene002040:intron 25.0%
AAAAAATAAACGGAGAACTG+GGG + chr2.3:75858184-75858203 None:intergenic 30.0%
AAAAAGGGTTTGAAAAAAGC+CGG - chr2.3:75855772-75855791 MS.gene002040:intron 30.0%
AAATAAACCAGTTCGACAAT+AGG + chr2.3:75859181-75859200 None:intergenic 30.0%
AAATGCATATGCTGCAAAAT+TGG + chr2.3:75857614-75857633 None:intergenic 30.0%
AACTCCAATCGTAGTAAAAA+TGG + chr2.3:75859662-75859681 None:intergenic 30.0%
AAGAAACACAAATATGAGGA+GGG + chr2.3:75856850-75856869 None:intergenic 30.0%
AAGCAAGAAGAACATAAACA+TGG + chr2.3:75859241-75859260 None:intergenic 30.0%
AAGCTAGATATGACACATTA+TGG - chr2.3:75859282-75859301 MS.gene002040:intron 30.0%
ACCAGTTTATGACATATATG+TGG + chr2.3:75860075-75860094 None:intergenic 30.0%
ACTTAATAAGCATTCAGAAG+AGG - chr2.3:75860710-75860729 MS.gene002040:CDS 30.0%
ACTTCAGATTTCCTTCTATT+GGG - chr2.3:75860595-75860614 MS.gene002040:intron 30.0%
AGAGTCAAGCATAAATATGA+AGG + chr2.3:75857702-75857721 None:intergenic 30.0%
AGTTAAAAGATGAAAAGGCT+TGG + chr2.3:75856009-75856028 None:intergenic 30.0%
ATGTCCTCTGATAATATCAA+AGG - chr2.3:75855694-75855713 MS.gene002040:CDS 30.0%
CAAATCTCAATTTCTCTGAA+TGG - chr2.3:75859504-75859523 MS.gene002040:intron 30.0%
CAAGTTATCACAGAAATATG+TGG - chr2.3:75860475-75860494 MS.gene002040:intron 30.0%
CAATCGTAGTAAAAATGGTA+GGG + chr2.3:75859657-75859676 None:intergenic 30.0%
CCAGTTTATGACATATATGT+GGG + chr2.3:75860074-75860093 None:intergenic 30.0%
CTTAGCATTATTATCAGGTA+TGG - chr2.3:75857667-75857686 MS.gene002040:intron 30.0%
GAAAAAAATAAACGGAGAAC+TGG + chr2.3:75858186-75858205 None:intergenic 30.0%
GAATTATATGTTACAGGAAG+TGG - chr2.3:75856921-75856940 MS.gene002040:intron 30.0%
GATACTTATATACAGGTTGT+TGG - chr2.3:75859373-75859392 MS.gene002040:intron 30.0%
GTTGATGCCTTATATTCAAA+TGG - chr2.3:75858657-75858676 MS.gene002040:CDS 30.0%
TACACAGTTTAATTCGTAGA+AGG + chr2.3:75858885-75858904 None:intergenic 30.0%
TACCTTAAACATGATAACAC+TGG + chr2.3:75859057-75859076 None:intergenic 30.0%
TACTTCAGATTTCCTTCTAT+TGG - chr2.3:75860594-75860613 MS.gene002040:intron 30.0%
TATAAACCATTATGTGTGTC+TGG + chr2.3:75858085-75858104 None:intergenic 30.0%
TCAGATCAATAAGTTGTACA+TGG + chr2.3:75857505-75857524 None:intergenic 30.0%
TTCAGTGCAACAAACTAATT+GGG - chr2.3:75856078-75856097 MS.gene002040:intron 30.0%
TTGATTATTGAATTGCATGC+TGG - chr2.3:75857025-75857044 MS.gene002040:intron 30.0%
TTGTCCAGATTTATTGTAGA+AGG - chr2.3:75857350-75857369 MS.gene002040:intron 30.0%
TTGTGCAACATCTTATTGTT+TGG - chr2.3:75857071-75857090 MS.gene002040:intron 30.0%
TTTCAGTGCAACAAACTAAT+TGG - chr2.3:75856077-75856096 MS.gene002040:intron 30.0%
! AATCCTAAATGTTTTGTGCA+CGG - chr2.3:75858858-75858877 MS.gene002040:intron 30.0%
! ACACATTGGTACATCTATTT+TGG - chr2.3:75858914-75858933 MS.gene002040:intron 30.0%
! ACCAATAGAATAGTGTGTTT+TGG - chr2.3:75859861-75859880 MS.gene002040:intron 30.0%
! ATAGATTAATGAGTTGGACA+GGG - chr2.3:75856272-75856291 MS.gene002040:intron 30.0%
! ATTTCTGTGATAACTTGTGT+TGG + chr2.3:75860472-75860491 None:intergenic 30.0%
! CACATTGGTACATCTATTTT+GGG - chr2.3:75858915-75858934 MS.gene002040:intron 30.0%
! CCAATAGAATAGTGTGTTTT+GGG - chr2.3:75859862-75859881 MS.gene002040:intron 30.0%
! CTACATATATTTGGAGTTCT+TGG - chr2.3:75857789-75857808 MS.gene002040:intron 30.0%
! GTGTAGTAACTTTTACACAT+TGG - chr2.3:75858900-75858919 MS.gene002040:intron 30.0%
! GTTGTACATGGATAATTTGT+TGG + chr2.3:75857493-75857512 None:intergenic 30.0%
! TATAGATTAATGAGTTGGAC+AGG - chr2.3:75856271-75856290 MS.gene002040:intron 30.0%
! TCTTCTTTTACATGCTTACT+AGG - chr2.3:75860675-75860694 MS.gene002040:CDS 30.0%
! TGCACAAAACATTTAGGATT+AGG + chr2.3:75858858-75858877 None:intergenic 30.0%
! TTCTTGTTATATACCCAATC+AGG - chr2.3:75856865-75856884 MS.gene002040:intron 30.0%
! TTGGATTGGATTGGATTATT+AGG - chr2.3:75855895-75855914 MS.gene002040:intron 30.0%
! TTGTCAGGTTCTCTTTTAAT+AGG - chr2.3:75858224-75858243 MS.gene002040:intron 30.0%
! TTTTCTATTTTATGCCGCAT+TGG - chr2.3:75858010-75858029 MS.gene002040:intron 30.0%
!! AACATCTTATTGTTTGGTGT+TGG - chr2.3:75857077-75857096 MS.gene002040:intron 30.0%
!! ACCCCTATTAAGATTTGTTA+AGG + chr2.3:75857233-75857252 None:intergenic 30.0%
!! ATTAAACTTGTTATCAGGAC+TGG - chr2.3:75860434-75860453 MS.gene002040:intron 30.0%
!! GGTAAATTTTGTTATGAGAC+TGG - chr2.3:75859073-75859092 MS.gene002040:intron 30.0%
!! TTAAACTTGTTATCAGGACT+GGG - chr2.3:75860435-75860454 MS.gene002040:intron 30.0%
!! TTAGTTTGTTGCACTGAAAA+TGG + chr2.3:75856076-75856095 None:intergenic 30.0%
!! TTTGATTTTTATCGTGTTCC+AGG - chr2.3:75860323-75860342 MS.gene002040:intron 30.0%
!!! AAAATGGTAGGGTTTTGATT+TGG + chr2.3:75859646-75859665 None:intergenic 30.0%
!!! AAATGGTAGGGTTTTGATTT+GGG + chr2.3:75859645-75859664 None:intergenic 30.0%
!!! GCTTAAGATCTGCATTTTTT+TGG - chr2.3:75855923-75855942 MS.gene002040:CDS 30.0%
!!! TAATCATGTTTTAAGATGGC+AGG + chr2.3:75860646-75860665 None:intergenic 30.0%
!!! TTTCTTCTTTTTTTTGACGG+GGG - chr2.3:75859898-75859917 MS.gene002040:intron 30.0%
AAAAATAAACGGAGAACTGG+GGG + chr2.3:75858183-75858202 None:intergenic 35.0%
AATAAGCATTCAGAAGAGGA+TGG - chr2.3:75860714-75860733 MS.gene002040:CDS 35.0%
AGAAACACAAATATGAGGAG+GGG + chr2.3:75856849-75856868 None:intergenic 35.0%
AGCACAATAGTTACATGTAG+AGG + chr2.3:75859557-75859576 None:intergenic 35.0%
AGCTAATTTACCCTCAAACT+TGG - chr2.3:75858304-75858323 MS.gene002040:intron 35.0%
ATTTGCATGATCTATCACAC+TGG + chr2.3:75859489-75859508 None:intergenic 35.0%
CAAGAAACACAAATATGAGG+AGG + chr2.3:75856851-75856870 None:intergenic 35.0%
CCAATCGTAGTAAAAATGGT+AGG + chr2.3:75859658-75859677 None:intergenic 35.0%
CCATAAAGTTAACTCTGTCT+GGG - chr2.3:75858274-75858293 MS.gene002040:intron 35.0%
CCCAAAACACACTATTCTAT+TGG + chr2.3:75859865-75859884 None:intergenic 35.0%
CCCACATATATGTCATAAAC+TGG - chr2.3:75860071-75860090 MS.gene002040:intron 35.0%
CTCTTGCCCATATTATCTTA+CGG - chr2.3:75857760-75857779 MS.gene002040:intron 35.0%
CTGCAAGCCATTTGAATATA+AGG + chr2.3:75858667-75858686 None:intergenic 35.0%
CTTTCATCCAGTTTCTTCAT+CGG - chr2.3:75855730-75855749 MS.gene002040:CDS 35.0%
GAAGTGGAAGACTAGAATAA+AGG + chr2.3:75858048-75858067 None:intergenic 35.0%
GAATAAATTACCTTCTGCTG+AGG - chr2.3:75860120-75860139 MS.gene002040:intron 35.0%
GAATAACAGTAGAGATAGAG+CGG + chr2.3:75859731-75859750 None:intergenic 35.0%
GATAACAAGTGAGTCATTCA+TGG - chr2.3:75856986-75857005 MS.gene002040:intron 35.0%
GATGAAGAAACTGGATGAAA+GGG + chr2.3:75855731-75855750 None:intergenic 35.0%
GATGATGCAAGTGTAATGAA+TGG - chr2.3:75858710-75858729 MS.gene002040:intron 35.0%
GCACAATAGTTACATGTAGA+GGG + chr2.3:75859556-75859575 None:intergenic 35.0%
GCTAATTTACCCTCAAACTT+GGG - chr2.3:75858305-75858324 MS.gene002040:intron 35.0%
GCTCATTTCTTAAACAAGCA+TGG - chr2.3:75860224-75860243 MS.gene002040:intron 35.0%
GGAAGACCTAGAAAGATTAT+AGG - chr2.3:75856228-75856247 MS.gene002040:intron 35.0%
GGAATGTAGAAATATTCCCA+TGG + chr2.3:75857458-75857477 None:intergenic 35.0%
GTGCTCTTAGCATTATTATC+AGG - chr2.3:75857662-75857681 MS.gene002040:intron 35.0%
GTTATGAGTGTTAAAGCTCT+TGG - chr2.3:75858246-75858265 MS.gene002040:intron 35.0%
TAATGAAATGAAGCAGCAAG+TGG + chr2.3:75855838-75855857 None:intergenic 35.0%
TCTCTCCCGTAAGATAATAT+GGG + chr2.3:75857769-75857788 None:intergenic 35.0%
TCTTGCCCATATTATCTTAC+GGG - chr2.3:75857761-75857780 MS.gene002040:intron 35.0%
TGGATGCTTATCAACTCTAT+TGG - chr2.3:75856727-75856746 MS.gene002040:intron 35.0%
TTATATGTTACAGGAAGTGG+AGG - chr2.3:75856924-75856943 MS.gene002040:intron 35.0%
TTCAGTGTAATCATAGGTGT+CGG - chr2.3:75856606-75856625 MS.gene002040:intron 35.0%
TTCCACTTCATTCCTCTATA+TGG - chr2.3:75858059-75858078 MS.gene002040:intron 35.0%
TTTGATATGGAGAAGATTCG+TGG - chr2.3:75856147-75856166 MS.gene002040:intron 35.0%
! CAAAGATCTCTCTCTTCTTT+TGG + chr2.3:75860099-75860118 None:intergenic 35.0%
! CTCTGAATGGTTTGACTTAT+AGG - chr2.3:75859517-75859536 MS.gene002040:intron 35.0%
! CTTATATTCAAATGGCTTGC+AGG - chr2.3:75858665-75858684 MS.gene002040:CDS 35.0%
! TGCTTTCACACATTTTCCAT+GGG - chr2.3:75857439-75857458 MS.gene002040:CDS 35.0%
! TTGCTTTCACACATTTTCCA+TGG - chr2.3:75857438-75857457 MS.gene002040:CDS 35.0%
! TTTTCTTCTGCACAAGACTA+AGG - chr2.3:75860522-75860541 MS.gene002040:intron 35.0%
! TTTTCTTCTTAATCAGGCAC+TGG - chr2.3:75858965-75858984 MS.gene002040:intron 35.0%
!! AATCAGGTTGACATACTTCT+AGG + chr2.3:75860005-75860024 None:intergenic 35.0%
!! AGATTTGTTAAGGTTCTGCA+TGG + chr2.3:75857223-75857242 None:intergenic 35.0%
!! ATGGCTTTGATGATGTTGAA+GGG - chr2.3:75860733-75860752 MS.gene002040:CDS 35.0%
!! ATTGGTACATCTATTTTGGG+TGG - chr2.3:75858918-75858937 MS.gene002040:intron 35.0%
!! CCTACCATTTTTACTACGAT+TGG - chr2.3:75859655-75859674 MS.gene002040:intron 35.0%
!!! GCTTTTTCAACAGTGATTGT+CGG - chr2.3:75857580-75857599 MS.gene002040:intron 35.0%
AAAACGAAGCAGGATTTGTG+GGG + chr2.3:75857132-75857151 None:intergenic 40.0%
AAAATAAACGGAGAACTGGG+GGG + chr2.3:75858182-75858201 None:intergenic 40.0%
AACCAAATCCTATTTCCGCT+TGG - chr2.3:75859416-75859435 MS.gene002040:intron 40.0%
AAGACTAAGGATATGGCAGA+AGG - chr2.3:75860535-75860554 MS.gene002040:intron 40.0%
AAGATTGAAACATGGCTACC+TGG + chr2.3:75857915-75857934 None:intergenic 40.0%
ACTTGTATGAACCACTTTGG+TGG - chr2.3:75856955-75856974 MS.gene002040:intron 40.0%
AGAGCAAAAACCCAAGTTTG+AGG + chr2.3:75858318-75858337 None:intergenic 40.0%
AGATGATGAGACATACCGAT+AGG + chr2.3:75858133-75858152 None:intergenic 40.0%
ATAGAGCGGAAGACTAGAAA+TGG + chr2.3:75859717-75859736 None:intergenic 40.0%
ATAGCAAGATCCCATACTTC+TGG + chr2.3:75857888-75857907 None:intergenic 40.0%
ATATGGCCAGACACACATAA+TGG - chr2.3:75858076-75858095 MS.gene002040:CDS 40.0%
ATGGATTCTTGCCTTCTAAG+GGG + chr2.3:75860762-75860781 None:intergenic 40.0%
CATGGATTCTTGCCTTCTAA+GGG + chr2.3:75860763-75860782 None:intergenic 40.0%
CCCAGACAGAGTTAACTTTA+TGG + chr2.3:75858277-75858296 None:intergenic 40.0%
CGATGAAGAAACTGGATGAA+AGG + chr2.3:75855732-75855751 None:intergenic 40.0%
CGGGAGAGACTACATATATT+TGG - chr2.3:75857780-75857799 MS.gene002040:intron 40.0%
CGTACTTGTATGAACCACTT+TGG - chr2.3:75856952-75856971 MS.gene002040:intron 40.0%
CTGTGGCAGTTATGCTATAA+AGG - chr2.3:75858567-75858586 MS.gene002040:CDS 40.0%
CTTGTATGAACCACTTTGGT+GGG - chr2.3:75856956-75856975 MS.gene002040:intron 40.0%
GAAAACGAAGCAGGATTTGT+GGG + chr2.3:75857133-75857152 None:intergenic 40.0%
GAAGAAAATGGAGTATGCTG+TGG - chr2.3:75856382-75856401 MS.gene002040:intron 40.0%
GAATTGTGCATGACCTGATT+GGG + chr2.3:75856881-75856900 None:intergenic 40.0%
GACCCATAAAACCACCAATT+CGG + chr2.3:75859599-75859618 None:intergenic 40.0%
GAGCAAAAACCCAAGTTTGA+GGG + chr2.3:75858317-75858336 None:intergenic 40.0%
GATGATGAGACATACCGATA+GGG + chr2.3:75858132-75858151 None:intergenic 40.0%
GATTCAATTTCCCGTTCTTG+AGG + chr2.3:75857861-75857880 None:intergenic 40.0%
GCCATAAAGTTAACTCTGTC+TGG - chr2.3:75858273-75858292 MS.gene002040:intron 40.0%
GGCCAGTGTTATCATGTTTA+AGG - chr2.3:75859052-75859071 MS.gene002040:intron 40.0%
GGTAGCTGTTATAACCAATG+CGG + chr2.3:75858027-75858046 None:intergenic 40.0%
GTCTCTCCCGTAAGATAATA+TGG + chr2.3:75857770-75857789 None:intergenic 40.0%
GTTCACAACATTAACCATCG+TGG - chr2.3:75859031-75859050 MS.gene002040:intron 40.0%
TAAACCAATGAATCTGCACC+TGG + chr2.3:75860344-75860363 None:intergenic 40.0%
TACTCCTCGAATTATGTGTG+CGG + chr2.3:75856672-75856691 None:intergenic 40.0%
TCATGGATTCTTGCCTTCTA+AGG + chr2.3:75860764-75860783 None:intergenic 40.0%
TCTGCACAAGACTAAGGATA+TGG - chr2.3:75860528-75860547 MS.gene002040:intron 40.0%
TGAAAACGAAGCAGGATTTG+TGG + chr2.3:75857134-75857153 None:intergenic 40.0%
TGAATTGTGCATGACCTGAT+TGG + chr2.3:75856882-75856901 None:intergenic 40.0%
TGCAAGTTTAGGTATCTGAG+TGG - chr2.3:75858757-75858776 MS.gene002040:intron 40.0%
TGCATTTGCTCCAGCTATAT+TGG - chr2.3:75857627-75857646 MS.gene002040:intron 40.0%
TTACATGTAGAGGGAAGATC+AGG + chr2.3:75859547-75859566 None:intergenic 40.0%
TTCTACATGCTCCTCAAGAA+CGG - chr2.3:75857847-75857866 MS.gene002040:intron 40.0%
TTGAATCAGTGCCAGAAGTA+TGG - chr2.3:75857874-75857893 MS.gene002040:intron 40.0%
TTGATCTGACTCCACTTAGA+GGG - chr2.3:75856327-75856346 MS.gene002040:intron 40.0%
TTTGATCTGACTCCACTTAG+AGG - chr2.3:75856326-75856345 MS.gene002040:intron 40.0%
! AGAAGTATGGGATCTTGCTA+TGG - chr2.3:75857887-75857906 MS.gene002040:intron 40.0%
! ATATTCAAATGGCTTGCAGG+TGG - chr2.3:75858668-75858687 MS.gene002040:CDS 40.0%
! ATTTGTTGGCGTCCATAGAT+TGG + chr2.3:75857479-75857498 None:intergenic 40.0%
! GATTCGTGGATTTTCTACTG+AGG - chr2.3:75856161-75856180 MS.gene002040:intron 40.0%
! GGCACTGGATACTTTCAATA+CGG - chr2.3:75858980-75858999 MS.gene002040:intron 40.0%
! TGAATCAGTGCCAGAAGTAT+GGG - chr2.3:75857875-75857894 MS.gene002040:intron 40.0%
!! ACTCCGAATTGGTGGTTTTA+TGG - chr2.3:75859593-75859612 MS.gene002040:intron 40.0%
!! AGTTATTTTGCAGTCTGCTG+TGG - chr2.3:75858550-75858569 MS.gene002040:CDS 40.0%
!! ATAATGCTAAGAGCACCAAG+CGG + chr2.3:75857658-75857677 None:intergenic 40.0%
!! GATGGCTTTGATGATGTTGA+AGG - chr2.3:75860732-75860751 MS.gene002040:CDS 40.0%
!!! CTCCGAATTGGTGGTTTTAT+GGG - chr2.3:75859594-75859613 MS.gene002040:intron 40.0%
ACTCCGTATACAAACCAAGC+CGG + chr2.3:75856754-75856773 None:intergenic 45.0%
ATGAAGCACAGATACAGACG+CGG - chr2.3:75856544-75856563 MS.gene002040:intron 45.0%
ATGGAGACTCGCAAATCCTT+TGG - chr2.3:75860243-75860262 MS.gene002040:intron 45.0%
ATGTGTGTCTGGCCATATAG+AGG + chr2.3:75858074-75858093 None:intergenic 45.0%
ATTCGGAGTAGAGTCGATAG+AGG + chr2.3:75859582-75859601 None:intergenic 45.0%
ATTTAGCCAACTCCACCAAG+CGG + chr2.3:75859434-75859453 None:intergenic 45.0%
CAAATCCTATTTCCGCTTGG+TGG - chr2.3:75859419-75859438 MS.gene002040:intron 45.0%
CACCAAGCGGAAATAGGATT+TGG + chr2.3:75859421-75859440 None:intergenic 45.0%
CCACTTAGAGGGATAAGACT+TGG - chr2.3:75856338-75856357 MS.gene002040:intron 45.0%
CTAGAAGCTGAAAACGAAGC+AGG + chr2.3:75857142-75857161 None:intergenic 45.0%
GATGTAAATGCCTCAGCAGA+AGG + chr2.3:75860133-75860152 None:intergenic 45.0%
GATTTGACACTACCCTCCAT+CGG + chr2.3:75856196-75856215 None:intergenic 45.0%
GCGTACACATACCTTCAACA+GGG - chr2.3:75860181-75860200 MS.gene002040:intron 45.0%
GCTTATCAACTCTATTGGCC+CGG - chr2.3:75856732-75856751 MS.gene002040:intron 45.0%
GGACCGTGCACAAAACATTT+AGG + chr2.3:75858864-75858883 None:intergenic 45.0%
GGATACTTTCAATACGGCAG+TGG - chr2.3:75858986-75859005 MS.gene002040:intron 45.0%
GGCCATATAGAGGAATGAAG+TGG + chr2.3:75858064-75858083 None:intergenic 45.0%
GGGTAGTGTCAAATCACTAG+AGG - chr2.3:75856201-75856220 MS.gene002040:intron 45.0%
GGGTTTGTGACGATACTTTC+AGG - chr2.3:75860496-75860515 MS.gene002040:intron 45.0%
GTTTGTATACGGAGTGGGTA+GGG - chr2.3:75856759-75856778 MS.gene002040:intron 45.0%
TCACAATGCACTTCCTAGTG+CGG - chr2.3:75860619-75860638 MS.gene002040:intron 45.0%
TCTACATGCTCCTCAAGAAC+GGG - chr2.3:75857848-75857867 MS.gene002040:intron 45.0%
TGCATTGTGAGCCCAATAGA+AGG + chr2.3:75860609-75860628 None:intergenic 45.0%
TGCGTACACATACCTTCAAC+AGG - chr2.3:75860180-75860199 MS.gene002040:intron 45.0%
TGTCAAATCACTAGAGGCAG+AGG - chr2.3:75856207-75856226 MS.gene002040:intron 45.0%
TGTTCCAGGTGCAGATTCAT+TGG - chr2.3:75860337-75860356 MS.gene002040:intron 45.0%
TTGAAGGGATTCCCCTTAGA+AGG - chr2.3:75860748-75860767 MS.gene002040:CDS 45.0%
TTTGTATACGGAGTGGGTAG+GGG - chr2.3:75856760-75856779 MS.gene002040:intron 45.0%
! CCAAGTCTTATCCCTCTAAG+TGG + chr2.3:75856341-75856360 None:intergenic 45.0%
! CTTGTTATCAGGACTGGGAT+AGG - chr2.3:75860440-75860459 MS.gene002040:intron 45.0%
! GCAGTTTTACACCCTGTTGA+AGG + chr2.3:75860195-75860214 None:intergenic 45.0%
! TATGAACCACTTTGGTGGGT+GGG - chr2.3:75856960-75856979 MS.gene002040:intron 45.0%
! TCTGAAGCCTATTGTCGAAC+TGG - chr2.3:75859171-75859190 MS.gene002040:intron 45.0%
!! CTATCGACTCTACTCCGAAT+TGG - chr2.3:75859582-75859601 MS.gene002040:intron 45.0%
!! GAGGAGTATCAGTGCTTCAT+AGG - chr2.3:75856684-75856703 MS.gene002040:intron 45.0%
!! GCTTGGTTTGTATACGGAGT+GGG - chr2.3:75856754-75856773 MS.gene002040:intron 45.0%
!! GGGGCAAGTTTCGTTTTTCA+AGG - chr2.3:75856780-75856799 MS.gene002040:intron 45.0%
!! GTACATCTATTTTGGGTGGC+TGG - chr2.3:75858922-75858941 MS.gene002040:intron 45.0%
!!! GGTAGGGTTTTGATTTGGGT+TGG + chr2.3:75859641-75859660 None:intergenic 45.0%
ACTGAGGAGAGTAGATCCGA+TGG - chr2.3:75856177-75856196 MS.gene002040:intron 50.0%
AGAAACTGGATGAAAGGGCG+AGG + chr2.3:75855726-75855745 None:intergenic 50.0%
AGAACCTGCTCTGATTCCAC+TGG + chr2.3:75855800-75855819 None:intergenic 50.0%
AGCAGCAGAAAGGTTGTGAG+AGG + chr2.3:75859761-75859780 None:intergenic 50.0%
AGCGGAGTGACCAATATAGC+TGG + chr2.3:75857640-75857659 None:intergenic 50.0%
AGGAGAGTAGATCCGATGGA+GGG - chr2.3:75856181-75856200 MS.gene002040:intron 50.0%
ATACCGATAGGGAGCCTACA+AGG + chr2.3:75858121-75858140 None:intergenic 50.0%
ATCGGCGTTTGTTCCCTTGT+AGG - chr2.3:75858104-75858123 MS.gene002040:CDS 50.0%
CAACTCCACCAAGCGGAAAT+AGG + chr2.3:75859427-75859446 None:intergenic 50.0%
CAAGTAGAGAGGTCGCGATA+GGG + chr2.3:75859791-75859810 None:intergenic 50.0%
CAGCAGCACTTCAAGTAGAG+AGG + chr2.3:75859802-75859821 None:intergenic 50.0%
CAGGTGGATAGTGAGTAGGA+AGG - chr2.3:75858684-75858703 MS.gene002040:intron 50.0%
CATGATAACACTGGCCACGA+TGG + chr2.3:75859048-75859067 None:intergenic 50.0%
CTCCGTATACAAACCAAGCC+GGG + chr2.3:75856753-75856772 None:intergenic 50.0%
CTTGCAGGTGGATAGTGAGT+AGG - chr2.3:75858680-75858699 MS.gene002040:CDS 50.0%
GCAGCAGAAAGGTTGTGAGA+GGG + chr2.3:75859760-75859779 None:intergenic 50.0%
GCTATATTGGTCACTCCGCT+TGG - chr2.3:75857640-75857659 MS.gene002040:intron 50.0%
GGTTGCGCTTTGTGTGTTGT+GGG - chr2.3:75857810-75857829 MS.gene002040:intron 50.0%
GGTTTGTATACGGAGTGGGT+AGG - chr2.3:75856758-75856777 MS.gene002040:intron 50.0%
GTATGAACCACTTTGGTGGG+TGG - chr2.3:75856959-75856978 MS.gene002040:intron 50.0%
GTTGCGCTTTGTGTGTTGTG+GGG - chr2.3:75857811-75857830 MS.gene002040:intron 50.0%
TACCGATAGGGAGCCTACAA+GGG + chr2.3:75858120-75858139 None:intergenic 50.0%
TCAAGTAGAGAGGTCGCGAT+AGG + chr2.3:75859792-75859811 None:intergenic 50.0%
TCCTCGAATTATGTGTGCGG+CGG + chr2.3:75856669-75856688 None:intergenic 50.0%
TCGACTCTACTCCGAATTGG+TGG - chr2.3:75859585-75859604 MS.gene002040:intron 50.0%
TGGCGAGTTCCTCTTCTAGT+TGG - chr2.3:75855662-75855681 MS.gene002040:CDS 50.0%
TGGTTGCGCTTTGTGTGTTG+TGG - chr2.3:75857809-75857828 MS.gene002040:intron 50.0%
TTCCCTTGTAGGCTCCCTAT+CGG - chr2.3:75858115-75858134 MS.gene002040:CDS 50.0%
TTGTATACGGAGTGGGTAGG+GGG - chr2.3:75856761-75856780 MS.gene002040:intron 50.0%
! CTATTTCCGCTTGGTGGAGT+TGG - chr2.3:75859425-75859444 MS.gene002040:intron 50.0%
! TCCTCTTCTAGTTGGCGAGA+GGG - chr2.3:75855670-75855689 MS.gene002040:CDS 50.0%
! TGGGATCTTGCTATGGATCC+AGG - chr2.3:75857894-75857913 MS.gene002040:intron 50.0%
! TTCCTCTTCTAGTTGGCGAG+AGG - chr2.3:75855669-75855688 MS.gene002040:CDS 50.0%
! TTGAAAAAAGCCGGTGCCAG+TGG - chr2.3:75855781-75855800 MS.gene002040:intron 50.0%
!! GCTAGCACCGATGAAGAAAC+TGG + chr2.3:75855740-75855759 None:intergenic 50.0%
!! GGCTTGGTTTGTATACGGAG+TGG - chr2.3:75856753-75856772 MS.gene002040:intron 50.0%
ACCGCCGCACACATAATTCG+AGG - chr2.3:75856665-75856684 MS.gene002040:intron 55.0%
ATCATGCCCACCCACCAAAG+TGG + chr2.3:75856969-75856988 None:intergenic 55.0%
GAGGAGAGTAGATCCGATGG+AGG - chr2.3:75856180-75856199 MS.gene002040:intron 55.0%
GGAGAACTGGGGGGAAAACA+AGG + chr2.3:75858173-75858192 None:intergenic 55.0%
TAAGATGGCAGGACCGCACT+AGG + chr2.3:75860635-75860654 None:intergenic 55.0%
TCAACTCTATTGGCCCGGCT+TGG - chr2.3:75856737-75856756 MS.gene002040:intron 55.0%
TCCCTCTCGCCAACTAGAAG+AGG + chr2.3:75855674-75855693 None:intergenic 55.0%
TGCTCTGATTCCACTGGCAC+CGG + chr2.3:75855794-75855813 None:intergenic 55.0%
! ACATGTGTCGGTGTCCGACA+TGG + chr2.3:75856640-75856659 None:intergenic 55.0%
! CGGCGGTGTCAAACATGTGT+CGG + chr2.3:75856652-75856671 None:intergenic 55.0%
!! GGCCCGGCTTGGTTTGTATA+CGG - chr2.3:75856748-75856767 MS.gene002040:intron 55.0%
!! TGTCGGTGTCGTGTCCATGT+CGG - chr2.3:75856623-75856642 MS.gene002040:intron 55.0%
GGGACAGAGCAGCAGCAGAA+AGG + chr2.3:75859771-75859790 None:intergenic 60.0%
GGTGCCAGTGGAATCAGAGC+AGG - chr2.3:75855793-75855812 MS.gene002040:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 75855661 75860794 75855661 ID=MS.gene002040
chr2.3 mRNA 75855661 75860794 75855661 ID=MS.gene002040.t1;Parent=MS.gene002040
chr2.3 exon 75860641 75860794 75860641 ID=MS.gene002040.t1.exon1;Parent=MS.gene002040.t1
chr2.3 CDS 75860641 75860794 75860641 ID=cds.MS.gene002040.t1;Parent=MS.gene002040.t1
chr2.3 exon 75859462 75859518 75859462 ID=MS.gene002040.t1.exon2;Parent=MS.gene002040.t1
chr2.3 CDS 75859462 75859518 75859462 ID=cds.MS.gene002040.t1;Parent=MS.gene002040.t1
chr2.3 exon 75858772 75858862 75858772 ID=MS.gene002040.t1.exon3;Parent=MS.gene002040.t1
chr2.3 CDS 75858772 75858862 75858772 ID=cds.MS.gene002040.t1;Parent=MS.gene002040.t1
chr2.3 exon 75858540 75858700 75858540 ID=MS.gene002040.t1.exon4;Parent=MS.gene002040.t1
chr2.3 CDS 75858540 75858700 75858540 ID=cds.MS.gene002040.t1;Parent=MS.gene002040.t1
chr2.3 exon 75858319 75858446 75858319 ID=MS.gene002040.t1.exon5;Parent=MS.gene002040.t1
chr2.3 CDS 75858319 75858446 75858319 ID=cds.MS.gene002040.t1;Parent=MS.gene002040.t1
chr2.3 exon 75858072 75858209 75858072 ID=MS.gene002040.t1.exon6;Parent=MS.gene002040.t1
chr2.3 CDS 75858072 75858209 75858072 ID=cds.MS.gene002040.t1;Parent=MS.gene002040.t1
chr2.3 exon 75857382 75857474 75857382 ID=MS.gene002040.t1.exon7;Parent=MS.gene002040.t1
chr2.3 CDS 75857382 75857474 75857382 ID=cds.MS.gene002040.t1;Parent=MS.gene002040.t1
chr2.3 exon 75855899 75856004 75855899 ID=MS.gene002040.t1.exon8;Parent=MS.gene002040.t1
chr2.3 CDS 75855899 75856004 75855899 ID=cds.MS.gene002040.t1;Parent=MS.gene002040.t1
chr2.3 exon 75855661 75855758 75855661 ID=MS.gene002040.t1.exon9;Parent=MS.gene002040.t1
chr2.3 CDS 75855661 75855758 75855661 ID=cds.MS.gene002040.t1;Parent=MS.gene002040.t1
Gene Sequence

>MS.gene002040

ATGGCGAGTTCCTCTTCTAGTTGGCGAGAGGGAATGTCCTCTGATAATATCAAAGGTTTAGTCCTCGCCCTTTCATCCAGTTTCTTCATCGGTGCTAGCTTCATTGTTAAAAAAAAGGGTTTGAAAAAAGCCGGTGCCAGTGGAATCAGAGCAGGTTCTATTCTATTCTTCGATCCACTTGCTGCTTCATTTCATTATGTTTACTTCTCATTCTCGACTTCAACTTTCATAAAATTGGATTGGATTGGATTATTAGGTTTTTGCTTAAGATCTGCATTTTTTTGGGGTTTTTACCTTTTCTTTAATGGGTAACTTTAACTGTTTTTCAAACTGGATTTTGCAATGCCAAGCCTTTTCATCTTTTAACTGTTTGCATAACATTTTACAACCTAAACGAGTAAGCTTAATTTATCCATTTTCAGTGCAACAAACTAATTGGGATAAAGATATCTCTTTGATGCTCTTATCTATTATTTTGTTGTGCTATTTGATATGGAGAAGATTCGTGGATTTTCTACTGAGGAGAGTAGATCCGATGGAGGGTAGTGTCAAATCACTAGAGGCAGAGGAAGACCTAGAAAGATTATAGGATAAACTATCAACAATGATCTATAGATTAATGAGTTGGACAGGGATATGATACATGATAGAACATTATGGCGTACTTTGATCTGACTCCACTTAGAGGGATAAGACTTGGATGTTGTTGTTTAATCGTCATGAAGAAAATGGAGTATGCTGTGGCCTGATCATGATAATGTTAAACTATGTTGAAAAAACTGTCTACAAGTTAAATTGTTTTCATGTTGTTTGTATGGACATATTTTTCTTTCTCATACAGTTAAATATGTTAACATAAAATGGATGCGTACAGATTAATACTATGAAGCACAGATACAGACGCGGACACTCCGACACCAATAATAATTTGAGAAAATGACATAATTCAGTGTAATCATAGGTGTCGGTGTCGTGTCCATGTCGGACACCGACACATGTTTGACACCGCCGCACACATAATTCGAGGAGTATCAGTGCTTCATAGGTTAAATATGTTAAAATGAAATGGATGCTTATCAACTCTATTGGCCCGGCTTGGTTTGTATACGGAGTGGGTAGGGGGCAAGTTTCGTTTTTCAAGGAACTATTTTATTTTATGATTTTATCTGCGCAATAGTTTTTTTTCCCCTCCTCATATTTGTGTTTCTTGTTATATACCCAATCAGGTCATGCACAATTCAATTGTAACTGACTTTCAAAGAATTATATGTTACAGGAAGTGGAGGCTATTCGTACTTGTATGAACCACTTTGGTGGGTGGGCATGATAACAAGTGAGTCATTCATGGTTCTATTTATTGTGAATTGATTATTGAATTGCATGCTGGTCTATATTTTCATTAAAATGTGTTTGTGCAACATCTTATTGTTTGGTGTTGGTGAACTGTATCTTTGATTTTTCTGTGCATCCCCACAAATCCTGCTTCGTTTTCAGCTTCTAGTGATTTTAGTAGTACAGAAAGTCATGTAGTTCCTATCTAAACTTGTATAATGTTAGTTCCATGCAGAACCTTAACAAATCTTAATAGGGGTGTTCTTCTGTATGTTTTTCTCTCATCGCTGTATGATTTATCATCTCTTAGCAAAAAGTCACAAGTGTACGTTAAGTTATATAAATTTTTGTTACTTATTGTCCAGATTTATTGTAGAAGGATTTTTTTTTTTTGGCTAAAGCTTGCATCTTTTCAGCTTTTCTTTCTAATCTTCTTACTTCTGTTTTGCTTTCACACATTTTCCATGGGAATATTTCTACATTCCAATCTATGGACGCCAACAAATTATCCATGTACAACTTATTGATCTGAGTTGCATACATTTATTTATACCAACAAATGGATTAAAGTTTCAATTTTAACATTTGCTTTTTCAACAGTGATTGTCGGAGAGATTGCCAATTTTGCAGCATATGCATTTGCTCCAGCTATATTGGTCACTCCGCTTGGTGCTCTTAGCATTATTATCAGGTATGGCAATTTTAACCTTCATATTTATGCTTGACTCTTTGTAAATTCTGATTTGTGATGATGTGCTGCAGTGCTGCTCTTGCCCATATTATCTTACGGGAGAGACTACATATATTTGGAGTTCTTGGTTGCGCTTTGTGTGTTGTGGGGTCTACAACAATTGTTCTACATGCTCCTCAAGAACGGGAAATTGAATCAGTGCCAGAAGTATGGGATCTTGCTATGGATCCAGGTAGCCATGTTTCAATCTTGAAATGTTAGTCTACTCAAAATATTGCATTGTAATCTAACTACTAACCAAAAGACACAATCTTTTTTTCTGCAGCTTTTCTATTTTATGCCGCATTGGTTATAACAGCTACCTTTATTCTAGTCTTCCACTTCATTCCTCTATATGGCCAGACACACATAATGGTTTATATCGGCGTTTGTTCCCTTGTAGGCTCCCTATCGGTATGTCTCATCATCTAGTTATTGATGAATAGTCCTTGTTTTCCCCCCAGTTCTCCGTTTATTTTTTTCCTTCTTTCTGTATTTATATTGTCAGGTTCTCTTTTAATAGGTTATGAGTGTTAAAGCTCTTGGAATTGCCATAAAGTTAACTCTGTCTGGGATGAATCAGCTAATTTACCCTCAAACTTGGGTTTTTGCTCTAGTTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGGTATGATAGCTTTTCTTGTTTCTTGATGTTTACATTTATTGGTAATTTTTGAAGTACCTTAATGGAAAACAATACATAAAAATGATTTTTCGGTGAAAAAATAAATCAAGAAAAAATTAATCTGTAGAGAAGTAACGAATACATTATCTATTTTGCATGATGGTGAAGTTATTTTGCAGTCTGCTGTGGCAGTTATGCTATAAAGGATAATGTTTTTCTTTAAAAACTCCATGTTTTACATCATTATTTATGGAAGAGGATTAGTACATTGAAGTTGATGCCTTATATTCAAATGGCTTGCAGGTGGATAGTGAGTAGGAAGGTCTGATGATGCAAGTGTAATGAATGGTTTAATAATTTAAATGCATATAAATGCAAGTTTAGGTATCTGAGTGGTCTATGTGAAAAGCTCATTATCTCTATAGTTTCGAACTTATGTTTAGGATTAGAATGTGACTTCAATATACAGTTCCTAATCCTAAATGTTTTGTGCACGGTCCTTCTACGAATTAAACTGTGTAGTAACTTTTACACATTGGTACATCTATTTTGGGTGGCTGGCTAATTCATGTGATACTTTTTTTTCTTCTTAATCAGGCACTGGATACTTTCAATACGGCAGTGGTATCTCCCATTTATTATGTTATGTTCACAACATTAACCATCGTGGCCAGTGTTATCATGTTTAAGGTAAATTTTGTTATGAGACTGGTTTATTTTTATTTTAATGACTCCGTAGCTTTTTTTACATTATCCAGATTGGTTGCTTAATTTAAAATCTGTGTTTTCTGAAGCCTATTGTCGAACTGGTTTATTTAAAGCATAAAATATCTTTCTATGTATTATGTATTATTCCATGTTTATGTTCTTCTTGCTTTTAATGTAATGGCAAAATAGAAAGCTAGATATGACACATTATGGCAGAGAAGTTCAATTTTAAGATGATATTTAACGTCATTTTGTGCTATACTTGTCACAAGATTCTTAACGATACTTATATACAGGTTGTTGGCTAGAACTACAATAGCAAACAACCAAATCCTATTTCCGCTTGGTGGAGTTGGCTAAATAAACGAAACAAATATTTCGTCGTGAATCGAGTCCAGTGTGATAGATCATGCAAATCTCAATTTCTCTGAATGGTTTGACTTATAGGCTTTCCTGATCTTCCCTCTACATGTAACTATTGTGCTATCCTCTATCGACTCTACTCCGAATTGGTGGTTTTATGGGTCTTCTTTGCTCATGTTCAAGCCAACCCAAATCAAAACCCTACCATTTTTACTACGATTGGAGTTGCCTCAACTTTCTTTGTAATGATTTTCTCGTTCCATTTCTAGTCTTCCGCTCTATCTCTACTGTTATTCTGCTTTCCCTCTCACAACCTTTCTGCTGCTGCTCTGTCCCTATCGCGACCTCTCTACTTGAAGTGCTGCTGTTGAGCCCACATGATTTAGTGAAATTCATTTGAATTTCAACCAATAGAATAGTGTGTTTTGGGAATAGTTTTTTTTTTTCTTCTTTTTTTTGACGGGGGAAGAGTGTGTTAAAGTGTGCATCATTAACACTTCTCATATTTATTTTTTGTATGAATGGAGTACTTATTTTTGGTATGATACCTAGAAGTATGTCAACCTGATTTTACTTATGTTATAGTCAAGAATCAAGCTTATCAAAGTAAGCGTGTCCCACATATATGTCATAAACTGGTTCCAAAAGAAGAGAGAGATCTTTGAGAATAAATTACCTTCTGCTGAGGCATTTACATCTAGAATGTATGAAAATTGAAAATCATGTGCGTACACATACCTTCAACAGGGTGTAAAACTGCTTTCTTTTTGCTCATTTCTTAAACAAGCATGGAGACTCGCAAATCCTTTGGTACACATTAAAAATTGGTTTTATCCTTCATTTTGATTTTTTTTAAGAGGTCCTTCATTTTGATTTTTATCGTGTTCCAGGTGCAGATTCATTGGTTTAGATATTATATACATGTCAAATATCTGTCTGTCCGTTGTTTGCTAATTTGAAGATTCATCTTTGACTGAATATTAAACTTGTTATCAGGACTGGGATAGGCAAAGTCCAACACAAGTTATCACAGAAATATGTGGGTTTGTGACGATACTTTCAGGAACTTTTCTTCTGCACAAGACTAAGGATATGGCAGAAGGTATGCTCTAGTGATCTCATATGTTGTAATTTCACGTTACTTCAGATTTCCTTCTATTGGGCTCACAATGCACTTCCTAGTGCGGTCCTGCCATCTTAAAACATGATTATTAATGTTATCTTCTTTTACATGCTTACTAGGTTCATCTATTAGACTTAATAAGCATTCAGAAGAGGATGGCTTTGATGATGTTGAAGGGATTCCCCTTAGAAGGCAAGAATCCATGAGATCGCCATGA
Protein sequence

>MS.gene002040.t1

MASSSSSWREGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGIRAGSGGYSYLYEPLWWVGMITMIVGEIANFAAYAFAPAILVTPLGALSIIISAALAHIILRERLHIFGVLGCALCVVGSTTIVLHAPQEREIESVPEVWDLAMDPAFLFYAALVITATFILVFHFIPLYGQTHIMVYIGVCSLVGSLSVMSVKALGIAIKLTLSGMNQLIYPQTWVFALVVIVCVLTQMNYLNKALDTFNTAVVSPIYYVMFTTLTIVASVIMFKDWDRQSPTQVITEICGFVTILSGTFLLHKTKDMAEGSSIRLNKHSEEDGFDDVEGIPLRRQESMRSP