Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52088.t1 | XP_013456503.1 | 98.8 | 334 | 4 | 0 | 1 | 334 | 1 | 334 | 9.20E-180 | 639.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52088.t1 | Q8GWX2 | 76.7 | 322 | 71 | 2 | 4 | 324 | 3 | 321 | 5.3e-136 | 485.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52088.t1 | A0A072UL97 | 98.8 | 334 | 4 | 0 | 1 | 334 | 1 | 334 | 6.6e-180 | 639.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52088 | MS.gene90964 | PPI |
| MS.gene52088 | MS.gene072062 | PPI |
| MS.gene52088 | MS.gene047204 | PPI |
| MS.gene52088 | MS.gene045378 | PPI |
| MS.gene52088 | MS.gene79876 | PPI |
| MS.gene52088 | MS.gene77513 | PPI |
| MS.gene52088 | MS.gene75691 | PPI |
| MS.gene057722 | MS.gene52088 | PPI |
| MS.gene52088 | MS.gene002040 | PPI |
| MS.gene52088 | MS.gene00614 | PPI |
| MS.gene52088 | MS.gene057722 | PPI |
| MS.gene77513 | MS.gene52088 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52088.t1 | MTR_4g074050 | 98.802 | 334 | 4 | 0 | 1 | 334 | 1 | 334 | 0.0 | 676 |
| MS.gene52088.t1 | MTR_3g097220 | 62.687 | 335 | 115 | 2 | 1 | 331 | 1 | 329 | 4.18e-149 | 423 |
| MS.gene52088.t1 | MTR_3g097220 | 63.110 | 328 | 114 | 1 | 1 | 321 | 1 | 328 | 1.75e-148 | 422 |
| MS.gene52088.t1 | MTR_8g095060 | 60.058 | 343 | 124 | 3 | 4 | 333 | 3 | 345 | 2.13e-147 | 419 |
| MS.gene52088.t1 | MTR_5g090020 | 66.887 | 302 | 98 | 2 | 1 | 300 | 1 | 302 | 8.67e-142 | 405 |
| MS.gene52088.t1 | MTR_2g006070 | 62.081 | 298 | 113 | 0 | 4 | 301 | 15 | 312 | 3.36e-136 | 390 |
| MS.gene52088.t1 | MTR_8g081650 | 59.596 | 297 | 119 | 1 | 1 | 296 | 1 | 297 | 8.84e-130 | 374 |
| MS.gene52088.t1 | MTR_3g083960 | 58.117 | 308 | 128 | 1 | 1 | 307 | 1 | 308 | 6.37e-125 | 361 |
| MS.gene52088.t1 | MTR_5g090020 | 64.315 | 241 | 86 | 0 | 60 | 300 | 17 | 257 | 7.40e-108 | 317 |
| MS.gene52088.t1 | MTR_2g006070 | 63.478 | 230 | 84 | 0 | 4 | 233 | 15 | 244 | 1.04e-101 | 299 |
| MS.gene52088.t1 | MTR_3g097220 | 57.576 | 231 | 91 | 1 | 98 | 321 | 1 | 231 | 2.54e-92 | 275 |
| MS.gene52088.t1 | MTR_2g006070 | 62.162 | 185 | 70 | 0 | 4 | 188 | 15 | 199 | 7.84e-75 | 229 |
| MS.gene52088.t1 | MTR_5g049870 | 59.677 | 62 | 21 | 1 | 239 | 300 | 166 | 223 | 2.60e-13 | 69.3 |
| MS.gene52088.t1 | MTR_6g033100 | 19.926 | 271 | 197 | 4 | 54 | 307 | 57 | 324 | 4.00e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52088.t1 | AT2G21120 | 76.708 | 322 | 71 | 2 | 4 | 324 | 3 | 321 | 0.0 | 510 |
| MS.gene52088.t1 | AT4G38730 | 73.520 | 321 | 81 | 2 | 3 | 323 | 2 | 318 | 9.91e-175 | 488 |
| MS.gene52088.t1 | AT1G71900 | 63.758 | 298 | 108 | 0 | 4 | 301 | 17 | 314 | 4.22e-145 | 413 |
| MS.gene52088.t1 | AT1G71900 | 64.189 | 296 | 106 | 0 | 4 | 299 | 17 | 312 | 5.07e-145 | 413 |
| MS.gene52088.t1 | AT1G34470 | 62.081 | 298 | 113 | 0 | 4 | 301 | 17 | 314 | 3.84e-141 | 404 |
| MS.gene52088.t1 | AT4G09640 | 59.317 | 322 | 122 | 2 | 4 | 325 | 17 | 329 | 4.76e-133 | 384 |
| MS.gene52088.t1 | AT4G13800 | 61.513 | 304 | 116 | 1 | 5 | 307 | 7 | 310 | 2.17e-127 | 368 |
| MS.gene52088.t1 | AT4G13800 | 61.513 | 304 | 116 | 1 | 5 | 307 | 7 | 310 | 2.17e-127 | 368 |
| MS.gene52088.t1 | AT4G13800 | 61.513 | 304 | 116 | 1 | 5 | 307 | 7 | 310 | 2.17e-127 | 368 |
| MS.gene52088.t1 | AT4G13800 | 61.513 | 304 | 116 | 1 | 5 | 307 | 7 | 310 | 2.17e-127 | 368 |
| MS.gene52088.t1 | AT3G23870 | 61.184 | 304 | 117 | 1 | 5 | 307 | 7 | 310 | 4.18e-120 | 349 |
| MS.gene52088.t1 | AT3G23870 | 61.184 | 304 | 117 | 1 | 5 | 307 | 7 | 310 | 4.18e-120 | 349 |
| MS.gene52088.t1 | AT3G23870 | 61.184 | 304 | 117 | 1 | 5 | 307 | 7 | 310 | 4.18e-120 | 349 |
| MS.gene52088.t1 | AT3G23870 | 61.184 | 304 | 117 | 1 | 5 | 307 | 7 | 310 | 4.18e-120 | 349 |
| MS.gene52088.t1 | AT4G13800 | 63.462 | 260 | 95 | 0 | 5 | 264 | 7 | 266 | 9.84e-111 | 323 |
| MS.gene52088.t1 | AT4G13800 | 63.462 | 260 | 95 | 0 | 5 | 264 | 7 | 266 | 9.84e-111 | 323 |
| MS.gene52088.t1 | AT4G13800 | 61.803 | 233 | 89 | 0 | 5 | 237 | 7 | 239 | 5.17e-93 | 277 |
| MS.gene52088.t1 | AT4G13800 | 61.803 | 233 | 89 | 0 | 5 | 237 | 7 | 239 | 5.17e-93 | 277 |
| MS.gene52088.t1 | AT4G13800 | 61.803 | 233 | 89 | 0 | 5 | 237 | 7 | 239 | 5.17e-93 | 277 |
| MS.gene52088.t1 | AT4G13800 | 61.803 | 233 | 89 | 0 | 5 | 237 | 7 | 239 | 5.17e-93 | 277 |
| MS.gene52088.t1 | AT3G23870 | 56.502 | 223 | 96 | 1 | 86 | 307 | 8 | 230 | 6.15e-89 | 267 |
Find 83 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTTCTTGGACAGAATT+TGG | 0.146072 | 4.1:-29825972 | None:intergenic |
| TGCCAGCGCAATAATGTTTA+AGG | 0.152481 | 4.1:+29827404 | MS.gene52088:CDS |
| CTTGGGAATCTGTTCATTAA+TGG | 0.160246 | 4.1:+29826200 | MS.gene52088:CDS |
| CAAATTCTGTCCAAGAAATA+TGG | 0.182740 | 4.1:+29825973 | MS.gene52088:CDS |
| GCAATAAAGCTTACCCTTGA+TGG | 0.257921 | 4.1:+29826537 | MS.gene52088:CDS |
| GAACACCTTATCGTTATAAA+TGG | 0.262491 | 4.1:+29827884 | MS.gene52088:CDS |
| CGCAACGGTTTCAGTAGTTT+TGG | 0.278783 | 4.1:+29826125 | MS.gene52088:CDS |
| TGGCCAATTCCCATATTTCT+TGG | 0.298454 | 4.1:-29825983 | None:intergenic |
| ATATATTGCCAGTTCTGTTT+TGG | 0.310127 | 4.1:+29825842 | MS.gene52088:intron |
| TTGGGAATCTGTTCATTAAT+GGG | 0.315254 | 4.1:+29826201 | MS.gene52088:CDS |
| TATTCAGGTTATGAGCATTA+AGG | 0.365174 | 4.1:+29826503 | MS.gene52088:intron |
| TATCTGCCAACAGTGATTAC+TGG | 0.376516 | 4.1:+29825655 | MS.gene52088:intron |
| TGTCCAAGAAATATGGGAAT+TGG | 0.400693 | 4.1:+29825980 | MS.gene52088:CDS |
| TATAGTAGTAATGGGAGTTT+CGG | 0.402619 | 4.1:+29823901 | None:intergenic |
| TTCATTAATGGGTTCACTTA+CGG | 0.404625 | 4.1:+29826212 | MS.gene52088:CDS |
| GGATTCATCACCGTCCTTAC+GGG | 0.409126 | 4.1:+29827594 | MS.gene52088:CDS |
| TTTGGCCCACTTCTTGTTGA+AGG | 0.412006 | 4.1:+29825860 | MS.gene52088:CDS |
| TGGATTCATCACCGTCCTTA+CGG | 0.413632 | 4.1:+29827593 | MS.gene52088:CDS |
| TTGAAATTTGCAGGGGTTGG+TGG | 0.419893 | 4.1:+29825509 | MS.gene52088:intron |
| ATTCTGCACTCACCTTGTTA+AGG | 0.421446 | 4.1:-29826638 | None:intergenic |
| GTTTGTTCAAGTGGATTCAT+TGG | 0.433985 | 4.1:+29823950 | MS.gene52088:CDS |
| CTTATCTACTAGAGCCACTT+TGG | 0.445524 | 4.1:+29825537 | MS.gene52088:CDS |
| CCCACTTCTTGTTGAAGGAA+AGG | 0.449464 | 4.1:+29825865 | MS.gene52088:CDS |
| CTAGAGCCACTTTGGTGGGT+TGG | 0.450700 | 4.1:+29825545 | MS.gene52088:CDS |
| CCTTATCGTTATAAATGGTT+CGG | 0.453250 | 4.1:+29827889 | MS.gene52088:CDS |
| GAAGGAAAGGCTTCAGAAGA+TGG | 0.459990 | 4.1:+29825878 | MS.gene52088:CDS |
| ATTACAGGATTGGTCTGGTC+AGG | 0.460119 | 4.1:+29827542 | MS.gene52088:intron |
| TTCATCCTCAACGCACTTTG+CGG | 0.462155 | 4.1:-29827864 | None:intergenic |
| AAATTCTGTCCAAGAAATAT+GGG | 0.463697 | 4.1:+29825974 | MS.gene52088:CDS |
| CTATTTGACTTATTCCATCA+AGG | 0.474956 | 4.1:-29826551 | None:intergenic |
| TGGTTGCATCGAATGTATCC+AGG | 0.479552 | 4.1:-29827335 | None:intergenic |
| GAGTGTGTTCTTGTGGTGCA+TGG | 0.480134 | 4.1:-29825950 | None:intergenic |
| TGGGGAAGCTGCAAATTTCG+TGG | 0.490031 | 4.1:+29825675 | MS.gene52088:CDS |
| ATACTTGCGGTTTGTTCAAG+TGG | 0.491654 | 4.1:+29823941 | MS.gene52088:CDS |
| CCGAACCATTTATAACGATA+AGG | 0.492627 | 4.1:-29827889 | None:intergenic |
| GCCACTTTGGTGGGTTGGCA+TGG | 0.496440 | 4.1:+29825550 | MS.gene52088:CDS |
| GTGAACATCACATAATATAC+AGG | 0.497099 | 4.1:-29827366 | None:intergenic |
| TAGTTTCATCTTGAAGAAGA+AGG | 0.499105 | 4.1:+29823976 | MS.gene52088:CDS |
| TACCTTAAACATTATTGCGC+TGG | 0.499360 | 4.1:-29827406 | None:intergenic |
| ATCTGCCAACAGTGATTACT+GGG | 0.505809 | 4.1:+29825656 | MS.gene52088:intron |
| GTTATGAGCATTAAGGCCAT+TGG | 0.506421 | 4.1:+29826510 | MS.gene52088:CDS |
| GCAGTTCTAGTCACTCCTCT+TGG | 0.506507 | 4.1:+29825715 | MS.gene52088:CDS |
| AAGGAAAGGCTTCAGAAGAT+GGG | 0.508144 | 4.1:+29825879 | MS.gene52088:CDS |
| GCCTTTCCTTCAACAAGAAG+TGG | 0.508462 | 4.1:-29825866 | None:intergenic |
| TCTACTAGAGCCACTTTGGT+GGG | 0.510157 | 4.1:+29825541 | MS.gene52088:CDS |
| CTGGTGCAGGGAGCATGTCA+TGG | 0.510195 | 4.1:+29827825 | MS.gene52088:intron |
| TTTGCATTACAGGATTGGTC+TGG | 0.512734 | 4.1:+29827537 | MS.gene52088:intron |
| GCGCACTCAGCATCATTGTC+AGG | 0.519115 | 4.1:+29825737 | MS.gene52088:CDS |
| AACAATTGATCCCACGATGC+AGG | 0.520476 | 4.1:-29825919 | None:intergenic |
| GAATTTGGAGTGTGTTCTTG+TGG | 0.522100 | 4.1:-29825957 | None:intergenic |
| CGTGGCTTATATTTATGCTC+CGG | 0.534616 | 4.1:+29825693 | MS.gene52088:CDS |
| AAGCTTTATTGCAATTCCAA+TGG | 0.536342 | 4.1:-29826526 | None:intergenic |
| TGGGAATTGGCCACTCAACC+AGG | 0.542211 | 4.1:+29825993 | MS.gene52088:CDS |
| TATTTGACTTATTCCATCAA+GGG | 0.543563 | 4.1:-29826550 | None:intergenic |
| GCTTCACGCGGTACTCGTGC+AGG | 0.548482 | 4.1:+29824013 | MS.gene52088:CDS |
| ATCTACTAGAGCCACTTTGG+TGG | 0.549132 | 4.1:+29825540 | MS.gene52088:CDS |
| AAATAGCTTATCCTCAGACT+TGG | 0.552061 | 4.1:+29826568 | MS.gene52088:CDS |
| CTGTGTAACGACGCATATTG+TGG | 0.552275 | 4.1:-29826607 | None:intergenic |
| CAAGAAGAATCTACTAGGAA+AGG | 0.554656 | 4.1:+29827645 | MS.gene52088:CDS |
| AGTTTCATCTTGAAGAAGAA+GGG | 0.554873 | 4.1:+29823977 | MS.gene52088:CDS |
| GCAAAATTATTGTTCCCGTA+AGG | 0.557492 | 4.1:-29827608 | None:intergenic |
| GGATGTTTGTCCTGCATCGT+GGG | 0.557613 | 4.1:+29825909 | MS.gene52088:CDS |
| AAGAACAAGAAGAATCTACT+AGG | 0.560901 | 4.1:+29827640 | MS.gene52088:CDS |
| AATTATTGTTCCCGTAAGGA+CGG | 0.583221 | 4.1:-29827604 | None:intergenic |
| AGAGGAGTGACTAGAACTGC+CGG | 0.586116 | 4.1:-29825712 | None:intergenic |
| TTACAAAGGTTTGATACTTG+CGG | 0.591176 | 4.1:+29823928 | MS.gene52088:CDS |
| TACATGCCAACCTGGTTGAG+TGG | 0.602894 | 4.1:-29826003 | None:intergenic |
| TATGATTTATGCTGCCGCAA+CGG | 0.604508 | 4.1:+29826110 | MS.gene52088:CDS |
| GGAGTTTCGGAGAATTACAA+AGG | 0.605243 | 4.1:+29823914 | MS.gene52088:CDS |
| CCTTTCCTTCAACAAGAAGT+GGG | 0.611534 | 4.1:-29825865 | None:intergenic |
| AGGAAAGGCTTCAGAAGATG+GGG | 0.615805 | 4.1:+29825880 | MS.gene52088:CDS |
| AGCATAGCTTCTGAGATATG+TGG | 0.619389 | 4.1:+29827573 | MS.gene52088:CDS |
| ACCATGCCAACCCACCAAAG+TGG | 0.619871 | 4.1:-29825551 | None:intergenic |
| CTTAAACGTGCTGCTTCACG+CGG | 0.625267 | 4.1:+29824001 | MS.gene52088:CDS |
| AGGATGTTTGTCCTGCATCG+TGG | 0.637381 | 4.1:+29825908 | MS.gene52088:CDS |
| ACAGTTGAATTACCTTAACA+AGG | 0.637833 | 4.1:+29826626 | MS.gene52088:CDS |
| GGTTGCATCGAATGTATCCA+GGG | 0.642191 | 4.1:-29827334 | None:intergenic |
| ATAATATACAGGAGTTACAA+TGG | 0.642946 | 4.1:-29827355 | None:intergenic |
| ATGATGCTGAGTGCGCCAAG+AGG | 0.665488 | 4.1:-29825730 | None:intergenic |
| AGATTCCGCAAAGTGCGTTG+AGG | 0.668208 | 4.1:+29827859 | MS.gene52088:CDS |
| CAAAACTACTGAAACCGTTG+CGG | 0.677080 | 4.1:-29826124 | None:intergenic |
| GGAAAGGCTTCAGAAGATGG+GGG | 0.709721 | 4.1:+29825881 | MS.gene52088:CDS |
| TCTGCCAACAGTGATTACTG+GGG | 0.791567 | 4.1:+29825657 | MS.gene52088:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAAAAAAAAAAAAATAC+AGG | - | chr4.1:29824712-29824731 | None:intergenic | 10.0% |
| !! | ATCAAAAAAAAAAAATTTAC+AGG | + | chr4.1:29824877-29824896 | MS.gene52088:intron | 10.0% |
| !! | TAAAATAAATTAGAAATTTC+TGG | + | chr4.1:29825774-29825793 | MS.gene52088:intron | 10.0% |
| !! | TCAAAAAAAAAAAAAATACA+GGG | - | chr4.1:29824711-29824730 | None:intergenic | 10.0% |
| !! | TCAAAAAAAAAAAATTTACA+GGG | + | chr4.1:29824878-29824897 | MS.gene52088:intron | 10.0% |
| !! | TCTTGAAAAAAAAATAAAAT+CGG | + | chr4.1:29824797-29824816 | MS.gene52088:intron | 10.0% |
| !! | AAAAAAAAAAAAAATACAGG+GGG | - | chr4.1:29824709-29824728 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATTTACAGG+GGG | + | chr4.1:29824880-29824899 | MS.gene52088:intron | 15.0% |
| !! | AAACTTTCATATTAGAATTT+AGG | - | chr4.1:29824952-29824971 | None:intergenic | 15.0% |
| !! | AACTTTCATATTAGAATTTA+GGG | - | chr4.1:29824951-29824970 | None:intergenic | 15.0% |
| !! | AATTTAAGAGTAAACTAAAA+TGG | - | chr4.1:29826033-29826052 | None:intergenic | 15.0% |
| !! | ATTTAAGAGTAAACTAAAAT+GGG | - | chr4.1:29826032-29826051 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAAAAATACAG+GGG | - | chr4.1:29824710-29824729 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAAATTTACAG+GGG | + | chr4.1:29824879-29824898 | MS.gene52088:intron | 15.0% |
| !! | CAAAATTTCTTAAAAGAATA+AGG | - | chr4.1:29827278-29827297 | None:intergenic | 15.0% |
| !! | CTATTGTTTATTTAATATAC+TGG | + | chr4.1:29826701-29826720 | MS.gene52088:intron | 15.0% |
| !! | TAAACAATAGTTTATAGTTT+CGG | - | chr4.1:29826691-29826710 | None:intergenic | 15.0% |
| !!! | AAAACAAATTTTTTTTACAG+GGG | - | chr4.1:29824739-29824758 | None:intergenic | 15.0% |
| !!! | AATGATTTTTTAAACTATTC+AGG | + | chr4.1:29826488-29826507 | MS.gene52088:intron | 15.0% |
| !!! | ATCAAAACAATTTTTTTTAC+AGG | + | chr4.1:29824848-29824867 | MS.gene52088:intron | 15.0% |
| !!! | CAAAACAAATTTTTTTTACA+GGG | - | chr4.1:29824740-29824759 | None:intergenic | 15.0% |
| !!! | TATGATAAAAATCATTTTGA+AGG | + | chr4.1:29826245-29826264 | MS.gene52088:intron | 15.0% |
| !!! | TCAAAACAAATTTTTTTTAC+AGG | - | chr4.1:29824741-29824760 | None:intergenic | 15.0% |
| !!! | TCAAAACAATTTTTTTTACA+GGG | + | chr4.1:29824849-29824868 | MS.gene52088:intron | 15.0% |
| !! | AAAAAAAAAAATTTACAGGG+GGG | + | chr4.1:29824881-29824900 | MS.gene52088:intron | 20.0% |
| !! | AATCATAAATTCTGTTGAAA+AGG | - | chr4.1:29826097-29826116 | None:intergenic | 20.0% |
| !! | ATAAGATTTCTCTATAACAA+TGG | + | chr4.1:29827776-29827795 | MS.gene52088:intron | 20.0% |
| !! | ATCATAAATTCTGTTGAAAA+GGG | - | chr4.1:29826096-29826115 | None:intergenic | 20.0% |
| !! | ATTGTTATAGAGAAATCTTA+TGG | - | chr4.1:29827777-29827796 | None:intergenic | 20.0% |
| !! | ATTTGTAAGTTTGTAACATT+TGG | - | chr4.1:29825370-29825389 | None:intergenic | 20.0% |
| !! | CAAAATCAAATTTAAGTCTT+CGG | + | chr4.1:29825415-29825434 | MS.gene52088:intron | 20.0% |
| !! | TCATGCATTAAATAAAATCA+AGG | - | chr4.1:29826747-29826766 | None:intergenic | 20.0% |
| !! | TCCTGAATAAAAATCATTAT+TGG | - | chr4.1:29827026-29827045 | None:intergenic | 20.0% |
| !! | TTCTATGTATTAATTGCAAT+AGG | - | chr4.1:29827095-29827114 | None:intergenic | 20.0% |
| !!! | AAAACAATTTTTTTTACAGG+GGG | + | chr4.1:29824851-29824870 | MS.gene52088:intron | 20.0% |
| !!! | AAACAAATTTTTTTTACAGG+GGG | - | chr4.1:29824738-29824757 | None:intergenic | 20.0% |
| !!! | AAATAAAATCGGTTTTTGTT+TGG | + | chr4.1:29824808-29824827 | MS.gene52088:intron | 20.0% |
| !!! | AAATCATTATTGGCTTTTTT+TGG | - | chr4.1:29827016-29827035 | None:intergenic | 20.0% |
| !!! | AAGAAATTTTCGTTTTTGTT+TGG | - | chr4.1:29824781-29824800 | None:intergenic | 20.0% |
| !!! | AGAGTTGATCTATTTAAATT+AGG | + | chr4.1:29826904-29826923 | MS.gene52088:intron | 20.0% |
| !!! | ATTCAATTCTAGAATTTAGT+GGG | + | chr4.1:29824141-29824160 | MS.gene52088:intron | 20.0% |
| !!! | CAAAACAATTTTTTTTACAG+GGG | + | chr4.1:29824850-29824869 | MS.gene52088:intron | 20.0% |
| !!! | GTATATTTAGATTCACTTTT+GGG | - | chr4.1:29825457-29825476 | None:intergenic | 20.0% |
| !!! | GTGTTTTTAGTTATTTTGTA+AGG | + | chr4.1:29826815-29826834 | MS.gene52088:intron | 20.0% |
| !!! | TATTAGAATTTAGGGTTAAT+AGG | - | chr4.1:29824943-29824962 | None:intergenic | 20.0% |
| !!! | TGTATATTTAGATTCACTTT+TGG | - | chr4.1:29825458-29825477 | None:intergenic | 20.0% |
| !!! | TTTATGTTTTGAAATTTGCA+GGG | + | chr4.1:29825501-29825520 | MS.gene52088:intron | 20.0% |
| ! | AAATTCTGTCCAAGAAATAT+GGG | + | chr4.1:29825974-29825993 | MS.gene52088:CDS | 25.0% |
| ! | AATAACTAAAAACACAGAAG+AGG | - | chr4.1:29826810-29826829 | None:intergenic | 25.0% |
| ! | ATAATATACAGGAGTTACAA+TGG | - | chr4.1:29827358-29827377 | None:intergenic | 25.0% |
| ! | ATTAGCTAAAAGTGAGTTTA+AGG | + | chr4.1:29825268-29825287 | MS.gene52088:intron | 25.0% |
| ! | CTTATTTAAGCTTAACTTAG+TGG | - | chr4.1:29824286-29824305 | None:intergenic | 25.0% |
| ! | TAGATGGACAATAAGAAAAT+TGG | - | chr4.1:29827232-29827251 | None:intergenic | 25.0% |
| ! | TATAACAAACAACTTATGAG+AGG | + | chr4.1:29824350-29824369 | MS.gene52088:intron | 25.0% |
| ! | TTGAATGTAAAATTCACGTT+TGG | + | chr4.1:29825342-29825361 | MS.gene52088:intron | 25.0% |
| !! | AATGATTTTTATTCAGGAGT+GGG | + | chr4.1:29827028-29827047 | MS.gene52088:intron | 25.0% |
| !! | GCCAATAATGATTTTTATTC+AGG | + | chr4.1:29827022-29827041 | MS.gene52088:intron | 25.0% |
| !! | TAATGATTTTTATTCAGGAG+TGG | + | chr4.1:29827027-29827046 | MS.gene52088:intron | 25.0% |
| !! | TATTTGACTTATTCCATCAA+GGG | - | chr4.1:29826553-29826572 | None:intergenic | 25.0% |
| !! | TTAAATTTTGAACCTCGTTA+TGG | + | chr4.1:29826156-29826175 | MS.gene52088:CDS | 25.0% |
| !!! | AAATTTGATTTTGGCATGTT+TGG | - | chr4.1:29825408-29825427 | None:intergenic | 25.0% |
| !!! | AATTTGATTTTGGCATGTTT+GGG | - | chr4.1:29825407-29825426 | None:intergenic | 25.0% |
| !!! | CGAAGACTTAAATTTGATTT+TGG | - | chr4.1:29825417-29825436 | None:intergenic | 25.0% |
| !!! | CTTTATGTTTTGAAATTTGC+AGG | + | chr4.1:29825500-29825519 | MS.gene52088:intron | 25.0% |
| !!! | GATTCAATTCTAGAATTTAG+TGG | + | chr4.1:29824140-29824159 | MS.gene52088:intron | 25.0% |
| !!! | TTATGTTTTGAAATTTGCAG+GGG | + | chr4.1:29825502-29825521 | MS.gene52088:intron | 25.0% |
| !!! | TTCAATTCTAGAATTTAGTG+GGG | + | chr4.1:29824142-29824161 | MS.gene52088:intron | 25.0% |
| !!! | TTTAGTTTTAGTCTGAATGT+GGG | + | chr4.1:29825078-29825097 | MS.gene52088:intron | 25.0% |
| !!! | TTTTAGTTTTAGTCTGAATG+TGG | + | chr4.1:29825077-29825096 | MS.gene52088:intron | 25.0% |
| !!! | TTTTTGAAATGAAACTCACA+TGG | + | chr4.1:29825623-29825642 | MS.gene52088:intron | 25.0% |
| !!! | TTTTTGGTTATTATGCAGAT+AGG | - | chr4.1:29827000-29827019 | None:intergenic | 25.0% |
| AAGAACAAGAAGAATCTACT+AGG | + | chr4.1:29827640-29827659 | MS.gene52088:CDS | 30.0% | |
| ACACTGGTATATGAAAAGAT+TGG | + | chr4.1:29827497-29827516 | MS.gene52088:intron | 30.0% | |
| ACAGTTGAATTACCTTAACA+AGG | + | chr4.1:29826626-29826645 | MS.gene52088:CDS | 30.0% | |
| ACTTACTGATACAACATAGA+TGG | - | chr4.1:29827248-29827267 | None:intergenic | 30.0% | |
| AGTTTCATCTTGAAGAAGAA+GGG | + | chr4.1:29823977-29823996 | MS.gene52088:CDS | 30.0% | |
| ATAACAAAAAACCAAGTCTG+AGG | - | chr4.1:29826582-29826601 | None:intergenic | 30.0% | |
| ATGTACTAAATAACGTATCG+CGG | + | chr4.1:29826369-29826388 | MS.gene52088:intron | 30.0% | |
| CAAATTCTGTCCAAGAAATA+TGG | + | chr4.1:29825973-29825992 | MS.gene52088:CDS | 30.0% | |
| CAGAAATCAACTAACATATC+CGG | + | chr4.1:29825818-29825837 | MS.gene52088:intron | 30.0% | |
| CATATTTCTTGGACAGAATT+TGG | - | chr4.1:29825975-29825994 | None:intergenic | 30.0% | |
| CATTGTTAAATTCACTCACT+AGG | - | chr4.1:29824176-29824195 | None:intergenic | 30.0% | |
| CCTTATCGTTATAAATGGTT+CGG | + | chr4.1:29827889-29827908 | MS.gene52088:CDS | 30.0% | |
| CGGAAATAACCTATATTACA+GGG | + | chr4.1:29824909-29824928 | MS.gene52088:intron | 30.0% | |
| GAAATAACCTATATTACAGG+GGG | + | chr4.1:29824911-29824930 | MS.gene52088:intron | 30.0% | |
| GAACACCTTATCGTTATAAA+TGG | + | chr4.1:29827884-29827903 | MS.gene52088:CDS | 30.0% | |
| GGAAATAACCTATATTACAG+GGG | + | chr4.1:29824910-29824929 | MS.gene52088:intron | 30.0% | |
| GTAATAATGCTGTCAAATAG+AGG | - | chr4.1:29826432-29826451 | None:intergenic | 30.0% | |
| GTGAACATCACATAATATAC+AGG | - | chr4.1:29827369-29827388 | None:intergenic | 30.0% | |
| TAGTTTCATCTTGAAGAAGA+AGG | + | chr4.1:29823976-29823995 | MS.gene52088:CDS | 30.0% | |
| TATAGCACTGTAGCATATAA+CGG | - | chr4.1:29826328-29826347 | None:intergenic | 30.0% | |
| TATAGTTTCTTACACTAGTG+TGG | + | chr4.1:29826769-29826788 | MS.gene52088:intron | 30.0% | |
| TCACTATTCAACTATGTTTC+AGG | + | chr4.1:29827311-29827330 | MS.gene52088:intron | 30.0% | |
| TGTGTCATGTTATCGTAATT+TGG | - | chr4.1:29827071-29827090 | None:intergenic | 30.0% | |
| TTACAAAGGTTTGATACTTG+CGG | + | chr4.1:29823928-29823947 | MS.gene52088:CDS | 30.0% | |
| TTAGTTACAACTACCTTCAT+CGG | + | chr4.1:29825164-29825183 | MS.gene52088:intron | 30.0% | |
| TTATGGACAGAAAAATATGC+TGG | + | chr4.1:29826173-29826192 | MS.gene52088:CDS | 30.0% | |
| TTGGGAATCTGTTCATTAAT+GGG | + | chr4.1:29826201-29826220 | MS.gene52088:CDS | 30.0% | |
| ! | AAAAATATGCTGGTCTACTT+GGG | + | chr4.1:29826183-29826202 | MS.gene52088:CDS | 30.0% |
| ! | ATAAGAAAATTGGTGTCTGT+AGG | - | chr4.1:29827222-29827241 | None:intergenic | 30.0% |
| ! | ATATATTGCCAGTTCTGTTT+TGG | + | chr4.1:29825842-29825861 | MS.gene52088:intron | 30.0% |
| ! | ATATTTTTCTGTCCATAACG+AGG | - | chr4.1:29826171-29826190 | None:intergenic | 30.0% |
| ! | ATGTTTCATGCATTCTTTTG+GGG | + | chr4.1:29827448-29827467 | MS.gene52088:intron | 30.0% |
| ! | CATGTTTCATGCATTCTTTT+GGG | + | chr4.1:29827447-29827466 | MS.gene52088:intron | 30.0% |
| ! | CCTGTAATATAGGTTATTTC+CGG | - | chr4.1:29824911-29824930 | None:intergenic | 30.0% |
| ! | CTATTTGACTTATTCCATCA+AGG | - | chr4.1:29826554-29826573 | None:intergenic | 30.0% |
| ! | GGTTGAATATTGTGATTTTG+TGG | + | chr4.1:29825795-29825814 | MS.gene52088:intron | 30.0% |
| ! | TATTCAGGTTATGAGCATTA+AGG | + | chr4.1:29826503-29826522 | MS.gene52088:intron | 30.0% |
| ! | TCATGTTTCATGCATTCTTT+TGG | + | chr4.1:29827446-29827465 | MS.gene52088:intron | 30.0% |
| ! | TGCAGAATTTTAAACTCATC+CGG | + | chr4.1:29826653-29826672 | MS.gene52088:intron | 30.0% |
| !! | AAGCTTTATTGCAATTCCAA+TGG | - | chr4.1:29826529-29826548 | None:intergenic | 30.0% |
| !! | ATTGATTTGCATTACAGGAT+TGG | + | chr4.1:29827532-29827551 | MS.gene52088:intron | 30.0% |
| !! | ATTTGATTTTGGCATGTTTG+GGG | - | chr4.1:29825406-29825425 | None:intergenic | 30.0% |
| !! | CTTTCATTGATTTGCATTAC+AGG | + | chr4.1:29827527-29827546 | MS.gene52088:intron | 30.0% |
| !! | GCTGTTTTCATAAGCTATTT+TGG | - | chr4.1:29824401-29824420 | None:intergenic | 30.0% |
| !! | TCAATTCTAGAATTTAGTGG+GGG | + | chr4.1:29824143-29824162 | MS.gene52088:intron | 30.0% |
| !! | TTCATTAATGGGTTCACTTA+CGG | + | chr4.1:29826212-29826231 | MS.gene52088:CDS | 30.0% |
| !!! | GACTTGGTTTTTTGTTATAG+TGG | + | chr4.1:29826584-29826603 | MS.gene52088:CDS | 30.0% |
| !!! | TGCTCTACTAGTTTTAACAT+CGG | + | chr4.1:29826874-29826893 | MS.gene52088:intron | 30.0% |
| AAAAAATACAGGGGGAAAAC+CGG | - | chr4.1:29824701-29824720 | None:intergenic | 35.0% | |
| AAATAGCTTATCCTCAGACT+TGG | + | chr4.1:29826568-29826587 | MS.gene52088:CDS | 35.0% | |
| AACTACCTTCATCGGAAATA+AGG | + | chr4.1:29825172-29825191 | MS.gene52088:intron | 35.0% | |
| AATTATTGTTCCCGTAAGGA+CGG | - | chr4.1:29827607-29827626 | None:intergenic | 35.0% | |
| ACAGAACTGGCAATATATAC+CGG | - | chr4.1:29825840-29825859 | None:intergenic | 35.0% | |
| ACTACCTTCATCGGAAATAA+GGG | + | chr4.1:29825173-29825192 | MS.gene52088:intron | 35.0% | |
| CAAGAAGAATCTACTAGGAA+AGG | + | chr4.1:29827645-29827664 | MS.gene52088:CDS | 35.0% | |
| CCGAACCATTTATAACGATA+AGG | - | chr4.1:29827892-29827911 | None:intergenic | 35.0% | |
| CCGGAAATAACCTATATTAC+AGG | + | chr4.1:29824908-29824927 | MS.gene52088:intron | 35.0% | |
| CCTGTAATATAGGTCATTTC+CGG | + | chr4.1:29824679-29824698 | MS.gene52088:intron | 35.0% | |
| CGGAAATGACCTATATTACA+GGG | - | chr4.1:29824681-29824700 | None:intergenic | 35.0% | |
| CTTGGGAATCTGTTCATTAA+TGG | + | chr4.1:29826200-29826219 | MS.gene52088:CDS | 35.0% | |
| GATCTTTACCCCTGTAATAT+AGG | + | chr4.1:29824669-29824688 | MS.gene52088:intron | 35.0% | |
| GCAAAATTATTGTTCCCGTA+AGG | - | chr4.1:29827611-29827630 | None:intergenic | 35.0% | |
| GGAAATGACCTATATTACAG+GGG | - | chr4.1:29824680-29824699 | None:intergenic | 35.0% | |
| TACATAGTGTTGTCGAATAG+CGG | - | chr4.1:29826354-29826373 | None:intergenic | 35.0% | |
| TACCTTAAACATTATTGCGC+TGG | - | chr4.1:29827409-29827428 | None:intergenic | 35.0% | |
| TATGTTGTAGATCTGATCCA+AGG | - | chr4.1:29824214-29824233 | None:intergenic | 35.0% | |
| TGGTTATTATGCAGATAGGA+GGG | - | chr4.1:29826996-29827015 | None:intergenic | 35.0% | |
| TGTCCAAGAAATATGGGAAT+TGG | + | chr4.1:29825980-29825999 | MS.gene52088:CDS | 35.0% | |
| TTAAGACCGCAAACAGATTA+AGG | - | chr4.1:29824538-29824557 | None:intergenic | 35.0% | |
| TTGCAACATTGCTTACACAA+AGG | - | chr4.1:29827148-29827167 | None:intergenic | 35.0% | |
| TTGGTTATTATGCAGATAGG+AGG | - | chr4.1:29826997-29827016 | None:intergenic | 35.0% | |
| ! | ACGGGAACAATAATTTTGCA+TGG | + | chr4.1:29827612-29827631 | MS.gene52088:CDS | 35.0% |
| ! | AGATAATGGTCTGTTAGGAT+TGG | - | chr4.1:29824309-29824328 | None:intergenic | 35.0% |
| ! | AGCGCAATAATGTTTAAGGT+AGG | + | chr4.1:29827408-29827427 | MS.gene52088:intron | 35.0% |
| ! | ATAATGTTTAAGGTAGGCGT+AGG | + | chr4.1:29827414-29827433 | MS.gene52088:intron | 35.0% |
| ! | ATCGTGGATTGCAGAAATAT+CGG | + | chr4.1:29826290-29826309 | MS.gene52088:intron | 35.0% |
| ! | CGGGAACAATAATTTTGCAT+GGG | + | chr4.1:29827613-29827632 | MS.gene52088:CDS | 35.0% |
| ! | GAAAAATATGCTGGTCTACT+TGG | + | chr4.1:29826182-29826201 | MS.gene52088:CDS | 35.0% |
| ! | GTTTGTTCAAGTGGATTCAT+TGG | + | chr4.1:29823950-29823969 | MS.gene52088:CDS | 35.0% |
| ! | TAACAATGATCACGCGTTTT+GGG | + | chr4.1:29824188-29824207 | MS.gene52088:intron | 35.0% |
| ! | TTAACAATGATCACGCGTTT+TGG | + | chr4.1:29824187-29824206 | MS.gene52088:intron | 35.0% |
| ! | TTAACGCATTGACAAACATG+TGG | - | chr4.1:29827738-29827757 | None:intergenic | 35.0% |
| !! | ATTTTAGTGTGACATATGCC+TGG | + | chr4.1:29825028-29825047 | MS.gene52088:intron | 35.0% |
| !! | GGTTTTTGTTTGGCCTATTA+GGG | + | chr4.1:29824818-29824837 | MS.gene52088:intron | 35.0% |
| !! | GTTTTTGTTTGGCCTACTAA+GGG | - | chr4.1:29824770-29824789 | None:intergenic | 35.0% |
| !! | GTTTTTGTTTGGCCTATTAG+GGG | + | chr4.1:29824819-29824838 | MS.gene52088:intron | 35.0% |
| !! | TAATACGTTTAGCTTTCTCC+AGG | - | chr4.1:29825049-29825068 | None:intergenic | 35.0% |
| !! | TGCAGAAATATCGGTTTGTT+CGG | + | chr4.1:29826299-29826318 | MS.gene52088:intron | 35.0% |
| !! | TTTTTGTTTGGCCTACTAAG+GGG | - | chr4.1:29824769-29824788 | None:intergenic | 35.0% |
| !! | TTTTTGTTTGGCCTATTAGG+GGG | + | chr4.1:29824820-29824839 | MS.gene52088:intron | 35.0% |
| !!! | GGTTGTTTGTTTTACGTGTT+TGG | + | chr4.1:29825194-29825213 | MS.gene52088:intron | 35.0% |
| !!! | GTTTTACGTGTTTGGTTCTA+GGG | + | chr4.1:29825202-29825221 | MS.gene52088:intron | 35.0% |
| !!! | TGTTTTACGTGTTTGGTTCT+AGG | + | chr4.1:29825201-29825220 | MS.gene52088:intron | 35.0% |
| !!! | TTTTGATTTACCCCCTTAGT+AGG | + | chr4.1:29824755-29824774 | MS.gene52088:intron | 35.0% |
| AAATTTACAGGGGGGAAAAC+CGG | + | chr4.1:29824889-29824908 | MS.gene52088:intron | 40.0% | |
| AAGGAAAGGCTTCAGAAGAT+GGG | + | chr4.1:29825879-29825898 | MS.gene52088:CDS | 40.0% | |
| ACAGTGCCTTAATCTGTTTG+CGG | + | chr4.1:29824529-29824548 | MS.gene52088:intron | 40.0% | |
| ATCTGCCAACAGTGATTACT+GGG | + | chr4.1:29825656-29825675 | MS.gene52088:intron | 40.0% | |
| ATGCTGTCAAATAGAGGCTT+TGG | - | chr4.1:29826426-29826445 | None:intergenic | 40.0% | |
| ATTCTGCACTCACCTTGTTA+AGG | - | chr4.1:29826641-29826660 | None:intergenic | 40.0% | |
| CAAAACTACTGAAACCGTTG+CGG | - | chr4.1:29826127-29826146 | None:intergenic | 40.0% | |
| CCGGAAATGACCTATATTAC+AGG | - | chr4.1:29824682-29824701 | None:intergenic | 40.0% | |
| CCTTTCCTTCAACAAGAAGT+GGG | - | chr4.1:29825868-29825887 | None:intergenic | 40.0% | |
| CGTGGCTTATATTTATGCTC+CGG | + | chr4.1:29825693-29825712 | MS.gene52088:CDS | 40.0% | |
| CTAACAGACCATTATCTGTG+AGG | + | chr4.1:29824312-29824331 | MS.gene52088:intron | 40.0% | |
| CTTATCTACTAGAGCCACTT+TGG | + | chr4.1:29825537-29825556 | MS.gene52088:CDS | 40.0% | |
| GCAATAAAGCTTACCCTTGA+TGG | + | chr4.1:29826537-29826556 | MS.gene52088:CDS | 40.0% | |
| GGAGTTTCGGAGAATTACAA+AGG | + | chr4.1:29823914-29823933 | MS.gene52088:CDS | 40.0% | |
| GGTTATTATGCAGATAGGAG+GGG | - | chr4.1:29826995-29827014 | None:intergenic | 40.0% | |
| GTCTTTACCCCCTGTAATAT+AGG | - | chr4.1:29824921-29824940 | None:intergenic | 40.0% | |
| GTTATGAGCATTAAGGCCAT+TGG | + | chr4.1:29826510-29826529 | MS.gene52088:CDS | 40.0% | |
| TATCTGCCAACAGTGATTAC+TGG | + | chr4.1:29825655-29825674 | MS.gene52088:intron | 40.0% | |
| TATGATTTATGCTGCCGCAA+CGG | + | chr4.1:29826110-29826129 | MS.gene52088:CDS | 40.0% | |
| TGAAGTGACAGTATCTTCTC+TGG | + | chr4.1:29827806-29827825 | MS.gene52088:intron | 40.0% | |
| TGCCAGCGCAATAATGTTTA+AGG | + | chr4.1:29827404-29827423 | MS.gene52088:CDS | 40.0% | |
| TGGCCAATTCCCATATTTCT+TGG | - | chr4.1:29825986-29826005 | None:intergenic | 40.0% | |
| ! | ACAACCCTTATTTCCGATGA+AGG | - | chr4.1:29825180-29825199 | None:intergenic | 40.0% |
| ! | ACTTTTCGTCTGTTGAACAC+TGG | + | chr4.1:29827481-29827500 | MS.gene52088:intron | 40.0% |
| ! | ATACTTGCGGTTTGTTCAAG+TGG | + | chr4.1:29823941-29823960 | MS.gene52088:CDS | 40.0% |
| ! | CTCACAGATAATGGTCTGTT+AGG | - | chr4.1:29824314-29824333 | None:intergenic | 40.0% |
| ! | GAAGATACTGTCACTTCATG+AGG | - | chr4.1:29827804-29827823 | None:intergenic | 40.0% |
| ! | GAATTTGGAGTGTGTTCTTG+TGG | - | chr4.1:29825960-29825979 | None:intergenic | 40.0% |
| ! | TTTGATTTACCCCCCCTAAT+AGG | - | chr4.1:29824834-29824853 | None:intergenic | 40.0% |
| !! | AGCATAGCTTCTGAGATATG+TGG | + | chr4.1:29827573-29827592 | MS.gene52088:CDS | 40.0% |
| !! | CGGTTTTTGTTTGGCCTATT+AGG | + | chr4.1:29824817-29824836 | MS.gene52088:intron | 40.0% |
| !! | CGTTTTTGTTTGGCCTACTA+AGG | - | chr4.1:29824771-29824790 | None:intergenic | 40.0% |
| !! | GTTTTAGTCTGAATGTGGGT+TGG | + | chr4.1:29825082-29825101 | MS.gene52088:intron | 40.0% |
| !! | TTTGCATTACAGGATTGGTC+TGG | + | chr4.1:29827537-29827556 | MS.gene52088:intron | 40.0% |
| !! | TTTTGTTTGGCCTACTAAGG+GGG | - | chr4.1:29824768-29824787 | None:intergenic | 40.0% |
| !! | TTTTGTTTGGCCTATTAGGG+GGG | + | chr4.1:29824821-29824840 | MS.gene52088:intron | 40.0% |
| !!! | AGAGTAAGTTGATCCGCTTT+TGG | - | chr4.1:29825114-29825133 | None:intergenic | 40.0% |
| !!! | GAGTAAGTTGATCCGCTTTT+GGG | - | chr4.1:29825113-29825132 | None:intergenic | 40.0% |
| !!! | GTTTTGAAATTTGCAGGGGT+TGG | + | chr4.1:29825506-29825525 | MS.gene52088:intron | 40.0% |
| !!! | TGGACGCAAATTTTCAAGTC+TGG | + | chr4.1:29826721-29826740 | MS.gene52088:intron | 40.0% |
| AACAATTGATCCCACGATGC+AGG | - | chr4.1:29825922-29825941 | None:intergenic | 45.0% | |
| AATCACAGTCACAGCCTCAT+AGG | + | chr4.1:29826849-29826868 | MS.gene52088:intron | 45.0% | |
| ACAGTATCTTCTCTGGTGCA+GGG | + | chr4.1:29827813-29827832 | MS.gene52088:intron | 45.0% | |
| AGCAATGCTCTTTCTCTCTC+AGG | + | chr4.1:29825587-29825606 | MS.gene52088:intron | 45.0% | |
| AGGAAAGGCTTCAGAAGATG+GGG | + | chr4.1:29825880-29825899 | MS.gene52088:CDS | 45.0% | |
| AGGAGTGGGTCAGTAATAAC+AGG | + | chr4.1:29827042-29827061 | MS.gene52088:intron | 45.0% | |
| ATCACAGTCACAGCCTCATA+GGG | + | chr4.1:29826850-29826869 | MS.gene52088:intron | 45.0% | |
| ATTATGCAGATAGGAGGGGA+AGG | - | chr4.1:29826991-29827010 | None:intergenic | 45.0% | |
| CATATCAGTGTTGTCGATCG+TGG | + | chr4.1:29826274-29826293 | MS.gene52088:intron | 45.0% | |
| CCAAACAGCCTCACAGATAA+TGG | - | chr4.1:29824323-29824342 | None:intergenic | 45.0% | |
| CCATTATCTGTGAGGCTGTT+TGG | + | chr4.1:29824320-29824339 | MS.gene52088:intron | 45.0% | |
| CCCACTTCTTGTTGAAGGAA+AGG | + | chr4.1:29825865-29825884 | MS.gene52088:CDS | 45.0% | |
| CTCTTTCTCTCTCAGGTAGA+AGG | + | chr4.1:29825594-29825613 | MS.gene52088:intron | 45.0% | |
| CTGTGTAACGACGCATATTG+TGG | - | chr4.1:29826610-29826629 | None:intergenic | 45.0% | |
| GAAGGAAAGGCTTCAGAAGA+TGG | + | chr4.1:29825878-29825897 | MS.gene52088:CDS | 45.0% | |
| GCCTTTCCTTCAACAAGAAG+TGG | - | chr4.1:29825869-29825888 | None:intergenic | 45.0% | |
| GGTTGCATCGAATGTATCCA+GGG | - | chr4.1:29827337-29827356 | None:intergenic | 45.0% | |
| GTTTCGGTTATAAGCTGCAC+CGG | - | chr4.1:29826675-29826694 | None:intergenic | 45.0% | |
| TCTGCCAACAGTGATTACTG+GGG | + | chr4.1:29825657-29825676 | MS.gene52088:intron | 45.0% | |
| TCTGTTTGCGGTCTTAAGCA+TGG | + | chr4.1:29824541-29824560 | MS.gene52088:intron | 45.0% | |
| TGGATTCATCACCGTCCTTA+CGG | + | chr4.1:29827593-29827612 | MS.gene52088:CDS | 45.0% | |
| TGGTTGCATCGAATGTATCC+AGG | - | chr4.1:29827338-29827357 | None:intergenic | 45.0% | |
| TTCAACTATGTTTCAGGCCC+TGG | + | chr4.1:29827317-29827336 | MS.gene52088:intron | 45.0% | |
| TTCATCCTCAACGCACTTTG+CGG | - | chr4.1:29827867-29827886 | None:intergenic | 45.0% | |
| TTGAAATTTGCAGGGGTTGG+TGG | + | chr4.1:29825509-29825528 | MS.gene52088:intron | 45.0% | |
| TTTGGCCCACTTCTTGTTGA+AGG | + | chr4.1:29825860-29825879 | MS.gene52088:CDS | 45.0% | |
| TTTGTTTGGCCTATTAGGGG+GGG | + | chr4.1:29824822-29824841 | MS.gene52088:intron | 45.0% | |
| ! | AAATAGAGGCTTTGGCGTAG+CGG | - | chr4.1:29826418-29826437 | None:intergenic | 45.0% |
| ! | ACTAGTAGAGCATCCCTATG+AGG | - | chr4.1:29826866-29826885 | None:intergenic | 45.0% |
| ! | ATCTACTAGAGCCACTTTGG+TGG | + | chr4.1:29825540-29825559 | MS.gene52088:CDS | 45.0% |
| ! | CGCAACGGTTTCAGTAGTTT+TGG | + | chr4.1:29826125-29826144 | MS.gene52088:CDS | 45.0% |
| ! | TCTACTAGAGCCACTTTGGT+GGG | + | chr4.1:29825541-29825560 | MS.gene52088:CDS | 45.0% |
| ! | TGCGGTCTTAAGCATGGTTT+TGG | + | chr4.1:29824547-29824566 | MS.gene52088:intron | 45.0% |
| !! | ATTACAGGATTGGTCTGGTC+AGG | + | chr4.1:29827542-29827561 | MS.gene52088:intron | 45.0% |
| !! | TTACGTGTTTGGTTCTAGGG+TGG | + | chr4.1:29825205-29825224 | MS.gene52088:intron | 45.0% |
| !!! | ATTCATTTTTAATAAATTTT+AGG | + | chr4.1:29824639-29824658 | MS.gene52088:intron | 5.0% |
| !!! | TTCATTTTTAATAAATTTTA+GGG | + | chr4.1:29824640-29824659 | MS.gene52088:intron | 5.0% |
| AATTGGCCACTCAACCAGGT+TGG | + | chr4.1:29825997-29826016 | MS.gene52088:intron | 50.0% | |
| AGAGGAGTGACTAGAACTGC+CGG | - | chr4.1:29825715-29825734 | None:intergenic | 50.0% | |
| AGATTCCGCAAAGTGCGTTG+AGG | + | chr4.1:29827859-29827878 | MS.gene52088:CDS | 50.0% | |
| AGGATGTTTGTCCTGCATCG+TGG | + | chr4.1:29825908-29825927 | MS.gene52088:CDS | 50.0% | |
| ATGGGAGATACATGCCAACC+TGG | - | chr4.1:29826014-29826033 | None:intergenic | 50.0% | |
| GAAGTGGGCCAAAACAGAAC+TGG | - | chr4.1:29825853-29825872 | None:intergenic | 50.0% | |
| GACAGTATCTTCTCTGGTGC+AGG | + | chr4.1:29827812-29827831 | MS.gene52088:intron | 50.0% | |
| GAGTGTGTTCTTGTGGTGCA+TGG | - | chr4.1:29825953-29825972 | None:intergenic | 50.0% | |
| GCTTCCCCAGTAATCACTGT+TGG | - | chr4.1:29825664-29825683 | None:intergenic | 50.0% | |
| GGAAAGGCTTCAGAAGATGG+GGG | + | chr4.1:29825881-29825900 | MS.gene52088:CDS | 50.0% | |
| GGATGTTTGTCCTGCATCGT+GGG | + | chr4.1:29825909-29825928 | MS.gene52088:CDS | 50.0% | |
| GGATTCATCACCGTCCTTAC+GGG | + | chr4.1:29827594-29827613 | MS.gene52088:CDS | 50.0% | |
| GGGTTGGAAGTTCCCAAAAG+CGG | + | chr4.1:29825098-29825117 | MS.gene52088:intron | 50.0% | |
| TACATGCCAACCTGGTTGAG+TGG | - | chr4.1:29826006-29826025 | None:intergenic | 50.0% | |
| TCTTACACTAGTGTGGTCCC+AGG | + | chr4.1:29826776-29826795 | MS.gene52088:intron | 50.0% | |
| TGGGGAAGCTGCAAATTTCG+TGG | + | chr4.1:29825675-29825694 | MS.gene52088:CDS | 50.0% | |
| ! | GCAGTTCTAGTCACTCCTCT+TGG | + | chr4.1:29825715-29825734 | MS.gene52088:CDS | 50.0% |
| !! | CTTAAACGTGCTGCTTCACG+CGG | + | chr4.1:29824001-29824020 | MS.gene52088:CDS | 50.0% |
| !! | CTTCAGAAGATGGGGGTGTT+AGG | + | chr4.1:29825888-29825907 | MS.gene52088:CDS | 50.0% |
| ACAGAAGAGGCTTTGCCTCC+TGG | - | chr4.1:29826797-29826816 | None:intergenic | 55.0% | |
| ACCATGCCAACCCACCAAAG+TGG | - | chr4.1:29825554-29825573 | None:intergenic | 55.0% | |
| ATGATGCTGAGTGCGCCAAG+AGG | - | chr4.1:29825733-29825752 | None:intergenic | 55.0% | |
| CAGAAGAGGCTTTGCCTCCT+GGG | - | chr4.1:29826796-29826815 | None:intergenic | 55.0% | |
| GCGCACTCAGCATCATTGTC+AGG | + | chr4.1:29825737-29825756 | MS.gene52088:CDS | 55.0% | |
| TACACTAGTGTGGTCCCAGG+AGG | + | chr4.1:29826779-29826798 | MS.gene52088:intron | 55.0% | |
| TGGGAATTGGCCACTCAACC+AGG | + | chr4.1:29825993-29826012 | MS.gene52088:CDS | 55.0% | |
| ! | CTAGAGCCACTTTGGTGGGT+TGG | + | chr4.1:29825545-29825564 | MS.gene52088:CDS | 55.0% |
| !! | CGTGTTTGGTTCTAGGGTGG+CGG | + | chr4.1:29825208-29825227 | MS.gene52088:intron | 55.0% |
| !! | TGATCACGCGTTTTGGGCCT+TGG | + | chr4.1:29824194-29824213 | MS.gene52088:intron | 55.0% |
| ! | CTGGTGCAGGGAGCATGTCA+TGG | + | chr4.1:29827825-29827844 | MS.gene52088:intron | 60.0% |
| !! | GCCACTTTGGTGGGTTGGCA+TGG | + | chr4.1:29825550-29825569 | MS.gene52088:CDS | 60.0% |
| GCTTCACGCGGTACTCGTGC+AGG | + | chr4.1:29824013-29824032 | MS.gene52088:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 29823911 | 29827928 | 29823911 | ID=MS.gene52088 |
| chr4.1 | mRNA | 29823911 | 29827928 | 29823911 | ID=MS.gene52088.t1;Parent=MS.gene52088 |
| chr4.1 | exon | 29823911 | 29824034 | 29823911 | ID=MS.gene52088.t1.exon1;Parent=MS.gene52088.t1 |
| chr4.1 | CDS | 29823911 | 29824034 | 29823911 | ID=cds.MS.gene52088.t1;Parent=MS.gene52088.t1 |
| chr4.1 | exon | 29825522 | 29825578 | 29825522 | ID=MS.gene52088.t1.exon2;Parent=MS.gene52088.t1 |
| chr4.1 | CDS | 29825522 | 29825578 | 29825522 | ID=cds.MS.gene52088.t1;Parent=MS.gene52088.t1 |
| chr4.1 | exon | 29825668 | 29825758 | 29825668 | ID=MS.gene52088.t1.exon3;Parent=MS.gene52088.t1 |
| chr4.1 | CDS | 29825668 | 29825758 | 29825668 | ID=cds.MS.gene52088.t1;Parent=MS.gene52088.t1 |
| chr4.1 | exon | 29825854 | 29826014 | 29825854 | ID=MS.gene52088.t1.exon4;Parent=MS.gene52088.t1 |
| chr4.1 | CDS | 29825854 | 29826014 | 29825854 | ID=cds.MS.gene52088.t1;Parent=MS.gene52088.t1 |
| chr4.1 | exon | 29826106 | 29826233 | 29826106 | ID=MS.gene52088.t1.exon5;Parent=MS.gene52088.t1 |
| chr4.1 | CDS | 29826106 | 29826233 | 29826106 | ID=cds.MS.gene52088.t1;Parent=MS.gene52088.t1 |
| chr4.1 | exon | 29826510 | 29826647 | 29826510 | ID=MS.gene52088.t1.exon6;Parent=MS.gene52088.t1 |
| chr4.1 | CDS | 29826510 | 29826647 | 29826510 | ID=cds.MS.gene52088.t1;Parent=MS.gene52088.t1 |
| chr4.1 | exon | 29827333 | 29827425 | 29827333 | ID=MS.gene52088.t1.exon7;Parent=MS.gene52088.t1 |
| chr4.1 | CDS | 29827333 | 29827425 | 29827333 | ID=cds.MS.gene52088.t1;Parent=MS.gene52088.t1 |
| chr4.1 | exon | 29827549 | 29827666 | 29827549 | ID=MS.gene52088.t1.exon8;Parent=MS.gene52088.t1 |
| chr4.1 | CDS | 29827549 | 29827666 | 29827549 | ID=cds.MS.gene52088.t1;Parent=MS.gene52088.t1 |
| chr4.1 | exon | 29827834 | 29827928 | 29827834 | ID=MS.gene52088.t1.exon9;Parent=MS.gene52088.t1 |
| chr4.1 | CDS | 29827834 | 29827928 | 29827834 | ID=cds.MS.gene52088.t1;Parent=MS.gene52088.t1 |
| Gene Sequence |
| Protein sequence |
