Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045950.t1 | XP_013445694.1 | 92.1 | 290 | 18 | 3 | 1 | 290 | 1 | 285 | 3.50E-143 | 517.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045950.t1 | F4JKK0 | 35.4 | 96 | 50 | 3 | 40 | 132 | 47 | 133 | 4.1e-07 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045950.t1 | A0A072U1P4 | 92.1 | 290 | 18 | 3 | 1 | 290 | 1 | 285 | 2.5e-143 | 517.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25499 | MS.gene045950 | PPI |
| MS.gene36852 | MS.gene045950 | PPI |
| MS.gene045950 | MS.gene032904 | PPI |
| MS.gene045950 | MS.gene25499 | PPI |
| MS.gene55219 | MS.gene045950 | PPI |
| MS.gene045950 | MS.gene55219 | PPI |
| MS.gene045950 | MS.gene34660 | PPI |
| MS.gene070573 | MS.gene045950 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045950.t1 | MTR_8g467220 | 96.552 | 290 | 5 | 3 | 1 | 290 | 1 | 285 | 0.0 | 565 |
| MS.gene045950.t1 | MTR_5g040650 | 73.986 | 296 | 65 | 7 | 1 | 290 | 1 | 290 | 3.04e-126 | 361 |
| MS.gene045950.t1 | MTR_5g040650 | 74.902 | 255 | 53 | 6 | 1 | 249 | 1 | 250 | 1.18e-112 | 326 |
| MS.gene045950.t1 | MTR_1g108490 | 39.062 | 256 | 132 | 5 | 1 | 250 | 1 | 238 | 2.53e-58 | 187 |
| MS.gene045950.t1 | MTR_1g108490 | 38.528 | 231 | 116 | 5 | 1 | 226 | 1 | 210 | 1.18e-48 | 161 |
| MS.gene045950.t1 | MTR_7g109460 | 39.572 | 187 | 100 | 5 | 67 | 249 | 17 | 194 | 7.86e-40 | 139 |
| MS.gene045950.t1 | MTR_7g082950 | 37.097 | 186 | 104 | 6 | 68 | 250 | 14 | 189 | 1.53e-38 | 135 |
| MS.gene045950.t1 | MTR_7g082950 | 42.754 | 138 | 70 | 4 | 68 | 205 | 14 | 142 | 2.07e-34 | 122 |
| MS.gene045950.t1 | MTR_7g109460 | 40.127 | 157 | 82 | 4 | 67 | 220 | 17 | 164 | 4.76e-33 | 119 |
| MS.gene045950.t1 | MTR_1g087150 | 43.373 | 166 | 87 | 4 | 67 | 227 | 17 | 180 | 2.87e-32 | 119 |
| MS.gene045950.t1 | MTR_1g087150 | 43.373 | 166 | 87 | 4 | 67 | 227 | 17 | 180 | 1.19e-31 | 117 |
| MS.gene045950.t1 | MTR_7g010610 | 53.846 | 65 | 28 | 1 | 66 | 128 | 31 | 95 | 5.75e-19 | 82.4 |
| MS.gene045950.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 4.40e-11 | 63.5 |
| MS.gene045950.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 4.45e-11 | 63.5 |
| MS.gene045950.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 5.69e-11 | 62.8 |
| MS.gene045950.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 6.90e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045950.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 7.79e-100 | 294 |
| MS.gene045950.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 7.79e-100 | 294 |
| MS.gene045950.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 7.79e-100 | 294 |
| MS.gene045950.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 7.79e-100 | 294 |
| MS.gene045950.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 7.79e-100 | 294 |
| MS.gene045950.t1 | AT3G47550 | 54.392 | 296 | 113 | 7 | 1 | 285 | 1 | 285 | 7.28e-91 | 271 |
| MS.gene045950.t1 | AT3G47550 | 54.392 | 296 | 113 | 7 | 1 | 285 | 1 | 285 | 7.28e-91 | 271 |
| MS.gene045950.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 1.04e-86 | 260 |
| MS.gene045950.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 1.04e-86 | 260 |
| MS.gene045950.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 1.04e-86 | 260 |
| MS.gene045950.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 81 | 314 | 1.95e-86 | 261 |
| MS.gene045950.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 68 | 301 | 2.16e-86 | 261 |
| MS.gene045950.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 68 | 301 | 2.16e-86 | 261 |
| MS.gene045950.t1 | AT3G47550 | 54.980 | 251 | 93 | 6 | 1 | 242 | 1 | 240 | 2.66e-78 | 238 |
| MS.gene045950.t1 | AT2G02960 | 72.483 | 149 | 36 | 2 | 57 | 205 | 33 | 176 | 3.10e-65 | 206 |
| MS.gene045950.t1 | AT3G47550 | 50.655 | 229 | 93 | 6 | 1 | 220 | 1 | 218 | 8.09e-61 | 193 |
| MS.gene045950.t1 | AT2G01275 | 39.344 | 244 | 129 | 3 | 1 | 244 | 1 | 225 | 2.31e-54 | 177 |
| MS.gene045950.t1 | AT2G01275 | 39.344 | 244 | 129 | 3 | 1 | 244 | 1 | 225 | 2.31e-54 | 177 |
| MS.gene045950.t1 | AT2G01275 | 39.344 | 244 | 129 | 3 | 1 | 244 | 1 | 225 | 2.31e-54 | 177 |
| MS.gene045950.t1 | AT2G01275 | 39.344 | 244 | 129 | 3 | 1 | 244 | 27 | 251 | 2.96e-54 | 178 |
| MS.gene045950.t1 | AT2G01275 | 39.344 | 244 | 129 | 3 | 1 | 244 | 27 | 251 | 2.96e-54 | 178 |
| MS.gene045950.t1 | AT5G38070 | 36.653 | 251 | 136 | 5 | 1 | 251 | 1 | 228 | 8.83e-43 | 147 |
| MS.gene045950.t1 | AT4G02075 | 37.245 | 196 | 103 | 5 | 64 | 254 | 14 | 194 | 1.23e-34 | 124 |
| MS.gene045950.t1 | AT4G02075 | 37.234 | 188 | 101 | 4 | 64 | 249 | 14 | 186 | 2.15e-34 | 124 |
| MS.gene045950.t1 | AT1G02610 | 34.896 | 192 | 118 | 3 | 58 | 249 | 9 | 193 | 7.43e-33 | 120 |
| MS.gene045950.t1 | AT1G02610 | 34.896 | 192 | 118 | 3 | 58 | 249 | 9 | 193 | 7.52e-33 | 120 |
| MS.gene045950.t1 | AT4G02075 | 39.634 | 164 | 81 | 4 | 64 | 223 | 14 | 163 | 2.31e-27 | 105 |
| MS.gene045950.t1 | AT4G32670 | 38.462 | 91 | 49 | 3 | 45 | 132 | 12 | 98 | 3.58e-12 | 67.0 |
| MS.gene045950.t1 | AT4G32670 | 38.462 | 91 | 49 | 3 | 45 | 132 | 12 | 98 | 3.58e-12 | 67.0 |
Find 83 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCACCGGCTGGGCCTTC+GGG | 0.238857 | 8.3:-43694547 | MS.gene045950:CDS |
| GTGCGTGCCTCAAGAGTAAA+AGG | 0.252040 | 8.3:+43692643 | None:intergenic |
| TCATTCACCGGCTGGGCCTT+CGG | 0.254316 | 8.3:-43694548 | MS.gene045950:CDS |
| GTACAAACTACACTTGTTCT+TGG | 0.290383 | 8.3:+43692034 | None:intergenic |
| CAACGCTGGTGCAACGAAAA+AGG | 0.305135 | 8.3:-43693468 | MS.gene045950:CDS |
| GAAGAAACTACCATTGATAT+AGG | 0.327532 | 8.3:-43693146 | MS.gene045950:CDS |
| GTTGCTTTCGTGCTACAATC+TGG | 0.341099 | 8.3:-43692117 | MS.gene045950:CDS |
| ATATCAATGGTAGTTTCTTC+AGG | 0.355321 | 8.3:+43693149 | None:intergenic |
| GACACTCTCTGGCACGCCTT+TGG | 0.362869 | 8.3:-43692985 | MS.gene045950:CDS |
| CACGGTTGCTGCTGGTGTTA+TGG | 0.367886 | 8.3:+43692071 | None:intergenic |
| TACCTTGCTATATCATGGCT+TGG | 0.375698 | 8.3:-43692427 | MS.gene045950:CDS |
| GGAGGATGGTATTGATAATC+TGG | 0.376997 | 8.3:-43694434 | MS.gene045950:CDS |
| CGCCTGTAGCGGAAGTCTTA+AGG | 0.384567 | 8.3:-43694401 | MS.gene045950:intron |
| TGTTGAGCCAACGGCTCAAC+CGG | 0.390160 | 8.3:+43694610 | None:intergenic |
| ACCTTGCTATATCATGGCTT+GGG | 0.419793 | 8.3:-43692426 | MS.gene045950:CDS |
| AAGAAACTACCATTGATATA+GGG | 0.430184 | 8.3:-43693145 | MS.gene045950:intron |
| CCGGTGATTCATTCACCGGC+TGG | 0.431407 | 8.3:-43694556 | MS.gene045950:CDS |
| AGTGGAGGCTGGACACTCTC+TGG | 0.436258 | 8.3:-43692996 | MS.gene045950:CDS |
| AACTTGTGAAATTTGTCATA+AGG | 0.437126 | 8.3:-43693439 | MS.gene045950:intron |
| TTGGTGTGGGTGCGGATTCA+CGG | 0.440637 | 8.3:+43692053 | None:intergenic |
| CGATCATGTGGTGTTGTTTG+TGG | 0.440955 | 8.3:-43694653 | MS.gene045950:CDS |
| GGCTCAGGAGCAGGTTGAGC+CGG | 0.455339 | 8.3:+43694586 | None:intergenic |
| TCGATTAATGCGACCGATGC+CGG | 0.461813 | 8.3:-43694629 | MS.gene045950:CDS |
| ATCACCGGCGGCATCGGCTC+AGG | 0.463289 | 8.3:+43694571 | None:intergenic |
| GGCGGCATCGGCTCAGGAGC+AGG | 0.463925 | 8.3:+43694577 | None:intergenic |
| TGCGGATTCACGGTTGCTGC+TGG | 0.464087 | 8.3:+43692063 | None:intergenic |
| GGTGGTGGAGCAGTATAATC+AGG | 0.466998 | 8.3:+43693182 | None:intergenic |
| TAAAACTTACCCTATATCAA+TGG | 0.471623 | 8.3:+43693136 | None:intergenic |
| GCTACAATCTGGGCAGCATA+GGG | 0.473645 | 8.3:-43692106 | MS.gene045950:CDS |
| ACCGATGCCGGTTGAGCCGT+TGG | 0.474368 | 8.3:-43694617 | MS.gene045950:CDS |
| TGAGCCGTTGGCTCAACATC+CGG | 0.480048 | 8.3:-43694605 | MS.gene045950:CDS |
| TCAGGATGTGGACGAGGTGG+TGG | 0.480833 | 8.3:+43693167 | None:intergenic |
| GAATGAATCACCGGCGGCAT+CGG | 0.484986 | 8.3:+43694565 | None:intergenic |
| AATACAGGAGGTTGCAGCAT+TGG | 0.491322 | 8.3:-43692151 | MS.gene045950:intron |
| GGCTGAGTGTAGGATTTGTC+AGG | 0.492601 | 8.3:-43694458 | MS.gene045950:CDS |
| ATCTCCATCTGCTGCAACAG+TGG | 0.494183 | 8.3:+43694481 | None:intergenic |
| ATTGTAGCACGAAAGCAACT+TGG | 0.495200 | 8.3:+43692121 | None:intergenic |
| CGAGCCACTGTTGCAGCAGA+TGG | 0.498606 | 8.3:-43694485 | MS.gene045950:CDS |
| TTCGGGTTCTTCTTCAGCGA+CGG | 0.501494 | 8.3:-43694530 | MS.gene045950:CDS |
| TTGCTTTCGTGCTACAATCT+GGG | 0.503156 | 8.3:-43692116 | MS.gene045950:CDS |
| TACCTTAAGACTTCCGCTAC+AGG | 0.504196 | 8.3:+43694399 | None:intergenic |
| ATGGTAGTTTCTTCAGGATG+TGG | 0.506061 | 8.3:+43693155 | None:intergenic |
| TGCTCCTGAGCCGATGCCGC+CGG | 0.506179 | 8.3:-43694575 | MS.gene045950:CDS |
| ACTTGTTCTTGGTGTGGGTG+CGG | 0.506923 | 8.3:+43692045 | None:intergenic |
| CGGTGATTCATTCACCGGCT+GGG | 0.519534 | 8.3:-43694555 | MS.gene045950:CDS |
| ACAGGAGGTTGCAGCATTGG+CGG | 0.522081 | 8.3:-43692148 | MS.gene045950:intron |
| GAAGAACCCGAAGGCCCAGC+CGG | 0.522173 | 8.3:+43694541 | None:intergenic |
| AACTACACTTGTTCTTGGTG+TGG | 0.527387 | 8.3:+43692039 | None:intergenic |
| GCCGCCGGTGATTCATTCAC+CGG | 0.532546 | 8.3:-43694560 | MS.gene045950:CDS |
| ATAGAAAGTGCGTCCAACGC+TGG | 0.549813 | 8.3:-43693482 | MS.gene045950:CDS |
| TGCTACAATCTGGGCAGCAT+AGG | 0.553716 | 8.3:-43692107 | MS.gene045950:CDS |
| ACTACACTTGTTCTTGGTGT+GGG | 0.560807 | 8.3:+43692040 | None:intergenic |
| ACGGCAAAATGCAGCTCCGT+TGG | 0.561312 | 8.3:+43692875 | None:intergenic |
| GCCAACGGCTCAACCGGCAT+CGG | 0.561647 | 8.3:+43694616 | None:intergenic |
| GTTTCTTCAGGATGTGGACG+AGG | 0.562462 | 8.3:+43693161 | None:intergenic |
| AGCAGTATAATCAGGTTCAT+AGG | 0.564830 | 8.3:+43693190 | None:intergenic |
| CTTGCGTGATCCTCGACTGT+TGG | 0.567744 | 8.3:-43692961 | MS.gene045950:CDS |
| AGACTTCCGCTACAGGCGCA+AGG | 0.568684 | 8.3:+43694406 | None:intergenic |
| GAGGCACGCACTTTCTGTCA+CGG | 0.569088 | 8.3:-43692631 | MS.gene045950:CDS |
| TTGTAGCACGAAAGCAACTT+GGG | 0.569577 | 8.3:+43692122 | None:intergenic |
| AGGATTTGTCAGGAGGAGGA+TGG | 0.574659 | 8.3:-43694448 | MS.gene045950:CDS |
| GTGTAGGATTTGTCAGGAGG+AGG | 0.581312 | 8.3:-43694452 | MS.gene045950:CDS |
| TGAGCCGGATGTTGAGCCAA+CGG | 0.585772 | 8.3:+43694601 | None:intergenic |
| CCAGCCGGTGAATGAATCAC+CGG | 0.593661 | 8.3:+43694556 | None:intergenic |
| GAAAATCCTTGCGCCTGTAG+CGG | 0.596482 | 8.3:-43694412 | MS.gene045950:CDS |
| AGATGGAGATGGCTGAGTGT+AGG | 0.601452 | 8.3:-43694468 | MS.gene045950:CDS |
| TTACGATCAGAGCAGCTGAA+CGG | 0.606397 | 8.3:+43692856 | None:intergenic |
| CGAGGATCACGCAAGTCCAA+AGG | 0.614034 | 8.3:+43692969 | None:intergenic |
| TCTGCAATTGCCAACAGTCG+AGG | 0.618576 | 8.3:+43692951 | None:intergenic |
| ACTGTTGCAGCAGATGGAGA+TGG | 0.626166 | 8.3:-43694479 | MS.gene045950:CDS |
| TCTTCAGGATGTGGACGAGG+TGG | 0.627168 | 8.3:+43693164 | None:intergenic |
| GCGACGGATGATGACGATGT+CGG | 0.628741 | 8.3:-43694514 | MS.gene045950:CDS |
| GCCCAAGCCATGATATAGCA+AGG | 0.629507 | 8.3:+43692425 | None:intergenic |
| TGCGTGCCTCAAGAGTAAAA+GGG | 0.629726 | 8.3:+43692644 | None:intergenic |
| TATGCTGCTTCTAATGCCAA+CGG | 0.637155 | 8.3:-43692891 | MS.gene045950:CDS |
| TCGACTGTTGGCAATTGCAG+AGG | 0.640710 | 8.3:-43692949 | MS.gene045950:CDS |
| TGAGTGTAGGATTTGTCAGG+AGG | 0.657795 | 8.3:-43694455 | MS.gene045950:CDS |
| GCCGGTGAATGAATCACCGG+CGG | 0.662712 | 8.3:+43694559 | None:intergenic |
| TGAATCAATGAGCGATCATG+TGG | 0.669095 | 8.3:-43694665 | None:intergenic |
| GGATGATGACGATGTCGGCG+AGG | 0.685342 | 8.3:-43694509 | MS.gene045950:CDS |
| GCAAGGTAAAAGAAAGCCAG+CGG | 0.689230 | 8.3:+43692442 | None:intergenic |
| CTACAATCTGGGCAGCATAG+GGG | 0.695813 | 8.3:-43692105 | MS.gene045950:CDS |
| GTCGCTGAAGAAGAACCCGA+AGG | 0.704233 | 8.3:+43694532 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTTTTATATACATAG+AGG | + | chr8.3:43692830-43692849 | None:intergenic | 10.0% |
| !!! | TAAATTTTTATATACATAGA+GGG | + | chr8.3:43692829-43692848 | None:intergenic | 10.0% |
| !! | ATACAAATAATCAGTTAAAA+AGG | + | chr8.3:43693886-43693905 | None:intergenic | 15.0% |
| !! | TATAAACTTTATACAATTGA+CGG | - | chr8.3:43694163-43694182 | MS.gene045950:intron | 15.0% |
| !! | AACTGATTATTTGTATAATC+CGG | - | chr8.3:43693890-43693909 | MS.gene045950:intron | 20.0% |
| !! | ATAAACTTTATACAATTGAC+GGG | - | chr8.3:43694164-43694183 | MS.gene045950:intron | 20.0% |
| !!! | AAATTTATGATTTGCTTAGA+AGG | - | chr8.3:43692842-43692861 | MS.gene045950:intron | 20.0% |
| !!! | AATTGTATGGTTTTGTATAT+AGG | - | chr8.3:43693322-43693341 | MS.gene045950:intron | 20.0% |
| ! | AACTTGTGAAATTTGTCATA+AGG | - | chr8.3:43693260-43693279 | MS.gene045950:intron | 25.0% |
| ! | AAGAAACTACCATTGATATA+GGG | - | chr8.3:43693554-43693573 | MS.gene045950:intron | 25.0% |
| ! | ACATATGTCATACAATTGTA+TGG | - | chr8.3:43693309-43693328 | MS.gene045950:intron | 25.0% |
| ! | ATGTCTAAGTGTAAAAAGAT+TGG | + | chr8.3:43693049-43693068 | None:intergenic | 25.0% |
| ! | CAATTTCGCTAATAAACTTT+AGG | - | chr8.3:43693937-43693956 | MS.gene045950:intron | 25.0% |
| ! | GTGATACATGTTAAAATGAA+AGG | + | chr8.3:43693369-43693388 | None:intergenic | 25.0% |
| ! | TAAAACTTACCCTATATCAA+TGG | + | chr8.3:43693566-43693585 | None:intergenic | 25.0% |
| ! | TAGACATAAGTGTATTGAAT+AGG | - | chr8.3:43693062-43693081 | MS.gene045950:intron | 25.0% |
| ! | TTTATTCTGTTATGCTTTGA+TGG | - | chr8.3:43692484-43692503 | MS.gene045950:intron | 25.0% |
| ! | TTTCGAAAATAACAATGTCT+AGG | + | chr8.3:43694383-43694402 | None:intergenic | 25.0% |
| !! | ATGCTTATCATTTCATGTTT+TGG | - | chr8.3:43694524-43694543 | MS.gene045950:CDS | 25.0% |
| !! | TGTTGTAAATTTCGTGTTTT+AGG | - | chr8.3:43692344-43692363 | MS.gene045950:intron | 25.0% |
| !!! | ATTTCATGTTTTGGTAATAC+AGG | - | chr8.3:43694533-43694552 | MS.gene045950:CDS | 25.0% |
| !!! | TTTTTTTATGAAATGATGCG+TGG | - | chr8.3:43692421-43692440 | MS.gene045950:CDS | 25.0% |
| ATATCAATGGTAGTTTCTTC+AGG | + | chr8.3:43693553-43693572 | None:intergenic | 30.0% | |
| CATATTCAGCTTCGAAAAAT+TGG | + | chr8.3:43693783-43693802 | None:intergenic | 30.0% | |
| CGAGATTGTTTATGAAAGAA+CGG | - | chr8.3:43692703-43692722 | MS.gene045950:intron | 30.0% | |
| GAAGAAACTACCATTGATAT+AGG | - | chr8.3:43693553-43693572 | MS.gene045950:intron | 30.0% | |
| TAGTCTTCACTCAAGAATTA+TGG | - | chr8.3:43693596-43693615 | MS.gene045950:intron | 30.0% | |
| TATCTCCACAATTATCTATG+TGG | + | chr8.3:43692942-43692961 | None:intergenic | 30.0% | |
| TATTAGCGAAATTGTATGTC+TGG | + | chr8.3:43693931-43693950 | None:intergenic | 30.0% | |
| TTAAACACTCTCTTAGTAAC+CGG | - | chr8.3:43693105-43693124 | MS.gene045950:intron | 30.0% | |
| TTTCACCACATAGATAATTG+TGG | - | chr8.3:43692934-43692953 | MS.gene045950:CDS | 30.0% | |
| ! | TGATCCATCTATGTTTTTCT+CGG | - | chr8.3:43694107-43694126 | MS.gene045950:intron | 30.0% |
| ! | TGATGTTAGAGCGTTATTAT+TGG | - | chr8.3:43692568-43692587 | MS.gene045950:intron | 30.0% |
| ! | TTTGAAACTTCTGTACTCAT+TGG | - | chr8.3:43693660-43693679 | MS.gene045950:intron | 30.0% |
| !! | TCTTTTACCTTGCTATATCA+TGG | - | chr8.3:43694267-43694286 | MS.gene045950:intron | 30.0% |
| !! | TTTTTCGAAGCTGAATATGA+TGG | - | chr8.3:43693784-43693803 | MS.gene045950:intron | 30.0% |
| !!! | GTATGGTTTTGTATATAGGT+AGG | - | chr8.3:43693326-43693345 | MS.gene045950:intron | 30.0% |
| AAACCAGCAGTTCGTAAATT+AGG | + | chr8.3:43693180-43693199 | None:intergenic | 35.0% | |
| AATGTGATTGAATGCATGTG+TGG | + | chr8.3:43692916-43692935 | None:intergenic | 35.0% | |
| ACCAGAACATAGAATGAATC+AGG | + | chr8.3:43694024-43694043 | None:intergenic | 35.0% | |
| AGCAGTATAATCAGGTTCAT+AGG | + | chr8.3:43693512-43693531 | None:intergenic | 35.0% | |
| ATCAGTTAAAAAGGACTGCA+TGG | + | chr8.3:43693877-43693896 | None:intergenic | 35.0% | |
| CTTACCGAGAAAAACATAGA+TGG | + | chr8.3:43694114-43694133 | None:intergenic | 35.0% | |
| TAAACACTCTCTTAGTAACC+GGG | - | chr8.3:43693106-43693125 | MS.gene045950:intron | 35.0% | |
| ! | AGTTGTGAACATTTTTGCAG+TGG | - | chr8.3:43693685-43693704 | MS.gene045950:intron | 35.0% |
| ! | CAATCAGTATTTTGCAACGA+CGG | - | chr8.3:43694296-43694315 | MS.gene045950:intron | 35.0% |
| ! | GGTTGCTTTCAAATATGTTG+TGG | - | chr8.3:43694185-43694204 | MS.gene045950:intron | 35.0% |
| ! | GTCTAGGACATGAACAAATA+TGG | + | chr8.3:43694367-43694386 | None:intergenic | 35.0% |
| ! | TTCTAGCAATGTTTTGTGCA+AGG | + | chr8.3:43693014-43693033 | None:intergenic | 35.0% |
| !! | AATTCACACAAAGAGTGCTT+TGG | + | chr8.3:43693422-43693441 | None:intergenic | 35.0% |
| !!! | TCATGTTTTGGTAATACAGG+AGG | - | chr8.3:43694536-43694555 | MS.gene045950:CDS | 35.0% |
| ATACACAACAGTGTTCTTCC+CGG | + | chr8.3:43693127-43693146 | None:intergenic | 40.0% | |
| ATGGTAGTTTCTTCAGGATG+TGG | + | chr8.3:43693547-43693566 | None:intergenic | 40.0% | |
| ATTGTAGCACGAAAGCAACT+TGG | + | chr8.3:43694581-43694600 | None:intergenic | 40.0% | |
| CATGCACATTGACGATGATA+GGG | - | chr8.3:43693965-43693984 | MS.gene045950:intron | 40.0% | |
| CTATGTTCTGGTGCAGTTAA+TGG | - | chr8.3:43694032-43694051 | MS.gene045950:intron | 40.0% | |
| CTGGTGTACATATACATGAC+CGG | + | chr8.3:43693912-43693931 | None:intergenic | 40.0% | |
| GCCTGATTCATTCTATGTTC+TGG | - | chr8.3:43694020-43694039 | MS.gene045950:intron | 40.0% | |
| GGAAGAACACTGTTGTGTAT+GGG | - | chr8.3:43693127-43693146 | MS.gene045950:intron | 40.0% | |
| TATGAAATGATGCGTGGATG+TGG | - | chr8.3:43692427-43692446 | MS.gene045950:CDS | 40.0% | |
| TCATGCACATTGACGATGAT+AGG | - | chr8.3:43693964-43693983 | MS.gene045950:intron | 40.0% | |
| TGTTGCATATTCCGGGAAAA+AGG | + | chr8.3:43694490-43694509 | None:intergenic | 40.0% | |
| TTGCTTTCGTGCTACAATCT+GGG | - | chr8.3:43694583-43694602 | MS.gene045950:CDS | 40.0% | |
| TTGTAGCACGAAAGCAACTT+GGG | + | chr8.3:43694580-43694599 | None:intergenic | 40.0% | |
| ! | ACCTTGCTATATCATGGCTT+GGG | - | chr8.3:43694273-43694292 | MS.gene045950:intron | 40.0% |
| ! | CCTGCATTTGTTGCATATTC+CGG | + | chr8.3:43694498-43694517 | None:intergenic | 40.0% |
| ! | CTGCATTTGTTGCATATTCC+GGG | + | chr8.3:43694497-43694516 | None:intergenic | 40.0% |
| ! | TAATGGCCCTTTTACTCTTG+AGG | - | chr8.3:43694049-43694068 | MS.gene045950:intron | 40.0% |
| ! | TACCTTGCTATATCATGGCT+TGG | - | chr8.3:43694272-43694291 | MS.gene045950:intron | 40.0% |
| ! | TATCTCTTGCTCCTTTTTCC+CGG | - | chr8.3:43694476-43694495 | MS.gene045950:CDS | 40.0% |
| ! | TATGCTGCTTCTAATGCCAA+CGG | - | chr8.3:43693808-43693827 | MS.gene045950:intron | 40.0% |
| ! | TGTGAACATTTTTGCAGTGG+AGG | - | chr8.3:43693688-43693707 | MS.gene045950:intron | 40.0% |
| !! | GGAGGATGGTATTGATAATC+TGG | - | chr8.3:43692265-43692284 | MS.gene045950:intron | 40.0% |
| AATACAGGAGGTTGCAGCAT+TGG | - | chr8.3:43694548-43694567 | MS.gene045950:CDS | 45.0% | |
| AATGATGCGTGGATGTGGAA+AGG | - | chr8.3:43692432-43692451 | MS.gene045950:CDS | 45.0% | |
| ACGCCTAATTTACGAACTGC+TGG | - | chr8.3:43693174-43693193 | MS.gene045950:CDS | 45.0% | |
| ATGATGCGTGGATGTGGAAA+GGG | - | chr8.3:43692433-43692452 | MS.gene045950:CDS | 45.0% | |
| CACTGTTGTGTATGGGACAT+TGG | - | chr8.3:43693134-43693153 | MS.gene045950:intron | 45.0% | |
| CCGGAATATGCAACAAATGC+AGG | - | chr8.3:43694495-43694514 | MS.gene045950:CDS | 45.0% | |
| GCAAGGTAAAAGAAAGCCAG+CGG | + | chr8.3:43694260-43694279 | None:intergenic | 45.0% | |
| GCTTAGAAGGTCTTCTCTCT+AGG | - | chr8.3:43692855-43692874 | MS.gene045950:intron | 45.0% | |
| GGGAAGAACACTGTTGTGTA+TGG | - | chr8.3:43693126-43693145 | MS.gene045950:intron | 45.0% | |
| GGGTGCTAACACTTTACAGT+TGG | - | chr8.3:43693985-43694004 | MS.gene045950:intron | 45.0% | |
| TACCTTAAGACTTCCGCTAC+AGG | + | chr8.3:43692303-43692322 | None:intergenic | 45.0% | |
| TGAGTGTAGGATTTGTCAGG+AGG | - | chr8.3:43692244-43692263 | MS.gene045950:intron | 45.0% | |
| TGCGTGCCTCAAGAGTAAAA+GGG | + | chr8.3:43694058-43694077 | None:intergenic | 45.0% | |
| TTACGATCAGAGCAGCTGAA+CGG | + | chr8.3:43693846-43693865 | None:intergenic | 45.0% | |
| ! | AACATTTTTGCAGTGGAGGC+TGG | - | chr8.3:43693692-43693711 | MS.gene045950:intron | 45.0% |
| ! | ATATACATAGAGGGCGCGTT+TGG | + | chr8.3:43692820-43692839 | None:intergenic | 45.0% |
| ! | GTTGCTTTCGTGCTACAATC+TGG | - | chr8.3:43694582-43694601 | MS.gene045950:CDS | 45.0% |
| !! | CGATCATGTGGTGTTGTTTG+TGG | - | chr8.3:43692046-43692065 | MS.gene045950:CDS | 45.0% |
| ACTGTTGCAGCAGATGGAGA+TGG | - | chr8.3:43692220-43692239 | MS.gene045950:intron | 50.0% | |
| AGATGGAGATGGCTGAGTGT+AGG | - | chr8.3:43692231-43692250 | MS.gene045950:intron | 50.0% | |
| AGGATTTGTCAGGAGGAGGA+TGG | - | chr8.3:43692251-43692270 | MS.gene045950:intron | 50.0% | |
| ATCTCCATCTGCTGCAACAG+TGG | + | chr8.3:43692221-43692240 | None:intergenic | 50.0% | |
| CAACGCTGGTGCAACGAAAA+AGG | - | chr8.3:43693231-43693250 | MS.gene045950:intron | 50.0% | |
| CTACAATCTGGGCAGCATAG+GGG | - | chr8.3:43694594-43694613 | MS.gene045950:CDS | 50.0% | |
| GAAAATCCTTGCGCCTGTAG+CGG | - | chr8.3:43692287-43692306 | MS.gene045950:intron | 50.0% | |
| GCCCAAGCCATGATATAGCA+AGG | + | chr8.3:43694277-43694296 | None:intergenic | 50.0% | |
| GCTACAATCTGGGCAGCATA+GGG | - | chr8.3:43694593-43694612 | MS.gene045950:CDS | 50.0% | |
| GGCTGAGTGTAGGATTTGTC+AGG | - | chr8.3:43692241-43692260 | MS.gene045950:intron | 50.0% | |
| GTGCGTGCCTCAAGAGTAAA+AGG | + | chr8.3:43694059-43694078 | None:intergenic | 50.0% | |
| GTGTAGGATTTGTCAGGAGG+AGG | - | chr8.3:43692247-43692266 | MS.gene045950:intron | 50.0% | |
| GTTTCTTCAGGATGTGGACG+AGG | + | chr8.3:43693541-43693560 | None:intergenic | 50.0% | |
| TCGACTGTTGGCAATTGCAG+AGG | - | chr8.3:43693750-43693769 | MS.gene045950:intron | 50.0% | |
| TCGATTAATGCGACCGATGC+CGG | - | chr8.3:43692070-43692089 | MS.gene045950:CDS | 50.0% | |
| TCTGCAATTGCCAACAGTCG+AGG | + | chr8.3:43693751-43693770 | None:intergenic | 50.0% | |
| TGCTACAATCTGGGCAGCAT+AGG | - | chr8.3:43694592-43694611 | MS.gene045950:CDS | 50.0% | |
| ! | ACTTGTTCTTGGTGTGGGTG+CGG | + | chr8.3:43694657-43694676 | None:intergenic | 50.0% |
| ! | ATAGAAAGTGCGTCCAACGC+TGG | - | chr8.3:43693217-43693236 | MS.gene045950:intron | 50.0% |
| ! | TTCGGGTTCTTCTTCAGCGA+CGG | - | chr8.3:43692169-43692188 | MS.gene045950:intron | 50.0% |
| !! | CTTTTTCGTTGCACCAGCGT+TGG | + | chr8.3:43693233-43693252 | None:intergenic | 50.0% |
| !! | GGTGGTGGAGCAGTATAATC+AGG | + | chr8.3:43693520-43693539 | None:intergenic | 50.0% |
| ACGGCAAAATGCAGCTCCGT+TGG | + | chr8.3:43693827-43693846 | None:intergenic | 55.0% | |
| CCAGCCGGTGAATGAATCAC+CGG | + | chr8.3:43692146-43692165 | None:intergenic | 55.0% | |
| CGAGGATCACGCAAGTCCAA+AGG | + | chr8.3:43693733-43693752 | None:intergenic | 55.0% | |
| CTTGCGTGATCCTCGACTGT+TGG | - | chr8.3:43693738-43693757 | MS.gene045950:intron | 55.0% | |
| GAATGAATCACCGGCGGCAT+CGG | + | chr8.3:43692137-43692156 | None:intergenic | 55.0% | |
| GAGGCACGCACTTTCTGTCA+CGG | - | chr8.3:43694068-43694087 | MS.gene045950:intron | 55.0% | |
| GTCGCTGAAGAAGAACCCGA+AGG | + | chr8.3:43692170-43692189 | None:intergenic | 55.0% | |
| TCTTCAGGATGTGGACGAGG+TGG | + | chr8.3:43693538-43693557 | None:intergenic | 55.0% | |
| TGAGCCGGATGTTGAGCCAA+CGG | + | chr8.3:43692101-43692120 | None:intergenic | 55.0% | |
| TGTTGAGCCAACGGCTCAAC+CGG | + | chr8.3:43692092-43692111 | None:intergenic | 55.0% | |
| TTGGTGTGGGTGCGGATTCA+CGG | + | chr8.3:43694649-43694668 | None:intergenic | 55.0% | |
| ! | ACAGGAGGTTGCAGCATTGG+CGG | - | chr8.3:43694551-43694570 | MS.gene045950:CDS | 55.0% |
| ! | CACGGTTGCTGCTGGTGTTA+TGG | + | chr8.3:43694631-43694650 | None:intergenic | 55.0% |
| ! | CGCCTGTAGCGGAAGTCTTA+AGG | - | chr8.3:43692298-43692317 | MS.gene045950:intron | 55.0% |
| ! | CGGTGATTCATTCACCGGCT+GGG | - | chr8.3:43692144-43692163 | MS.gene045950:CDS | 55.0% |
| ! | CTTTTCTTGCTTCGAGCCGC+TGG | - | chr8.3:43694241-43694260 | MS.gene045950:intron | 55.0% |
| ! | GCGACGGATGATGACGATGT+CGG | - | chr8.3:43692185-43692204 | MS.gene045950:intron | 55.0% |
| !! | TGAGCCGTTGGCTCAACATC+CGG | - | chr8.3:43692094-43692113 | MS.gene045950:CDS | 55.0% |
| AGACTTCCGCTACAGGCGCA+AGG | + | chr8.3:43692296-43692315 | None:intergenic | 60.0% | |
| AGTGGAGGCTGGACACTCTC+TGG | - | chr8.3:43693703-43693722 | MS.gene045950:intron | 60.0% | |
| CCGGTGATTCATTCACCGGC+TGG | - | chr8.3:43692143-43692162 | MS.gene045950:CDS | 60.0% | |
| CGAGCCACTGTTGCAGCAGA+TGG | - | chr8.3:43692214-43692233 | MS.gene045950:intron | 60.0% | |
| GACACTCTCTGGCACGCCTT+TGG | - | chr8.3:43693714-43693733 | MS.gene045950:intron | 60.0% | |
| GCCGCCGGTGATTCATTCAC+CGG | - | chr8.3:43692139-43692158 | MS.gene045950:CDS | 60.0% | |
| GCCGGTGAATGAATCACCGG+CGG | + | chr8.3:43692143-43692162 | None:intergenic | 60.0% | |
| TCAGGATGTGGACGAGGTGG+TGG | + | chr8.3:43693535-43693554 | None:intergenic | 60.0% | |
| TGCGGATTCACGGTTGCTGC+TGG | + | chr8.3:43694639-43694658 | None:intergenic | 60.0% | |
| ! | GGATGATGACGATGTCGGCG+AGG | - | chr8.3:43692190-43692209 | MS.gene045950:intron | 60.0% |
| ! | TCATTCACCGGCTGGGCCTT+CGG | - | chr8.3:43692151-43692170 | MS.gene045950:intron | 60.0% |
| GAAGAACCCGAAGGCCCAGC+CGG | + | chr8.3:43692161-43692180 | None:intergenic | 65.0% | |
| GCCAACGGCTCAACCGGCAT+CGG | + | chr8.3:43692086-43692105 | None:intergenic | 65.0% | |
| ! | ACCGATGCCGGTTGAGCCGT+TGG | - | chr8.3:43692082-43692101 | MS.gene045950:CDS | 65.0% |
| ! | CATTCACCGGCTGGGCCTTC+GGG | - | chr8.3:43692152-43692171 | MS.gene045950:intron | 65.0% |
| ! | GGCTCAGGAGCAGGTTGAGC+CGG | + | chr8.3:43692116-43692135 | None:intergenic | 65.0% |
| TGCTCCTGAGCCGATGCCGC+CGG | - | chr8.3:43692124-43692143 | MS.gene045950:CDS | 70.0% | |
| !! | ATCACCGGCGGCATCGGCTC+AGG | + | chr8.3:43692131-43692150 | None:intergenic | 70.0% |
| !! | GGCGGCATCGGCTCAGGAGC+AGG | + | chr8.3:43692125-43692144 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 43692041 | 43694680 | 43692041 | ID=MS.gene045950 |
| chr8.3 | mRNA | 43692041 | 43694680 | 43692041 | ID=MS.gene045950.t1;Parent=MS.gene045950 |
| chr8.3 | exon | 43694402 | 43694680 | 43694402 | ID=MS.gene045950.t1.exon1;Parent=MS.gene045950.t1 |
| chr8.3 | CDS | 43694402 | 43694680 | 43694402 | ID=cds.MS.gene045950.t1;Parent=MS.gene045950.t1 |
| chr8.3 | exon | 43693440 | 43693511 | 43693440 | ID=MS.gene045950.t1.exon2;Parent=MS.gene045950.t1 |
| chr8.3 | CDS | 43693440 | 43693511 | 43693440 | ID=cds.MS.gene045950.t1;Parent=MS.gene045950.t1 |
| chr8.3 | exon | 43693146 | 43693213 | 43693146 | ID=MS.gene045950.t1.exon3;Parent=MS.gene045950.t1 |
| chr8.3 | CDS | 43693146 | 43693213 | 43693146 | ID=cds.MS.gene045950.t1;Parent=MS.gene045950.t1 |
| chr8.3 | exon | 43692860 | 43693016 | 43692860 | ID=MS.gene045950.t1.exon4;Parent=MS.gene045950.t1 |
| chr8.3 | CDS | 43692860 | 43693016 | 43692860 | ID=cds.MS.gene045950.t1;Parent=MS.gene045950.t1 |
| chr8.3 | exon | 43692593 | 43692673 | 43692593 | ID=MS.gene045950.t1.exon5;Parent=MS.gene045950.t1 |
| chr8.3 | CDS | 43692593 | 43692673 | 43692593 | ID=cds.MS.gene045950.t1;Parent=MS.gene045950.t1 |
| chr8.3 | exon | 43692391 | 43692480 | 43692391 | ID=MS.gene045950.t1.exon6;Parent=MS.gene045950.t1 |
| chr8.3 | CDS | 43692391 | 43692480 | 43692391 | ID=cds.MS.gene045950.t1;Parent=MS.gene045950.t1 |
| chr8.3 | exon | 43692041 | 43692166 | 43692041 | ID=MS.gene045950.t1.exon7;Parent=MS.gene045950.t1 |
| chr8.3 | CDS | 43692041 | 43692166 | 43692041 | ID=cds.MS.gene045950.t1;Parent=MS.gene045950.t1 |
| Gene Sequence |
| Protein sequence |
