Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25499.t1 | XP_013445694.1 | 92.1 | 290 | 18 | 3 | 1 | 290 | 1 | 285 | 3.50E-143 | 517.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25499.t1 | F4JKK0 | 35.4 | 96 | 50 | 3 | 40 | 132 | 47 | 133 | 3.1e-07 | 57.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25499.t1 | A0A072U1P4 | 92.1 | 290 | 18 | 3 | 1 | 290 | 1 | 285 | 2.5e-143 | 517.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070573 | MS.gene25499 | PPI |
| MS.gene25499 | MS.gene045950 | PPI |
| MS.gene25499 | MS.gene032904 | PPI |
| MS.gene36852 | MS.gene25499 | PPI |
| MS.gene55219 | MS.gene25499 | PPI |
| MS.gene25499 | MS.gene55219 | PPI |
| MS.gene045950 | MS.gene25499 | PPI |
| MS.gene25499 | MS.gene34660 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25499.t1 | MTR_8g467220 | 96.552 | 290 | 5 | 3 | 1 | 290 | 1 | 285 | 0.0 | 564 |
| MS.gene25499.t1 | MTR_5g040650 | 73.986 | 296 | 65 | 7 | 1 | 290 | 1 | 290 | 2.27e-125 | 359 |
| MS.gene25499.t1 | MTR_5g040650 | 74.510 | 255 | 54 | 6 | 1 | 249 | 1 | 250 | 8.60e-112 | 323 |
| MS.gene25499.t1 | MTR_1g108490 | 37.500 | 264 | 140 | 5 | 1 | 257 | 1 | 246 | 1.33e-57 | 186 |
| MS.gene25499.t1 | MTR_1g108490 | 38.095 | 231 | 117 | 5 | 1 | 226 | 1 | 210 | 7.79e-48 | 159 |
| MS.gene25499.t1 | MTR_7g109460 | 39.037 | 187 | 101 | 5 | 67 | 249 | 17 | 194 | 4.99e-39 | 136 |
| MS.gene25499.t1 | MTR_7g082950 | 35.897 | 195 | 111 | 7 | 68 | 258 | 14 | 198 | 9.32e-38 | 133 |
| MS.gene25499.t1 | MTR_7g082950 | 42.029 | 138 | 71 | 4 | 68 | 205 | 14 | 142 | 1.26e-33 | 120 |
| MS.gene25499.t1 | MTR_7g109460 | 39.490 | 157 | 83 | 4 | 67 | 220 | 17 | 164 | 2.84e-32 | 117 |
| MS.gene25499.t1 | MTR_1g087150 | 42.771 | 166 | 88 | 4 | 67 | 227 | 17 | 180 | 1.79e-31 | 117 |
| MS.gene25499.t1 | MTR_1g087150 | 42.771 | 166 | 88 | 4 | 67 | 227 | 17 | 180 | 6.56e-31 | 115 |
| MS.gene25499.t1 | MTR_7g010610 | 49.275 | 69 | 35 | 0 | 66 | 134 | 31 | 99 | 2.25e-18 | 80.9 |
| MS.gene25499.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 4.33e-11 | 63.5 |
| MS.gene25499.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 5.01e-11 | 63.2 |
| MS.gene25499.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 5.91e-11 | 62.8 |
| MS.gene25499.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 7.03e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25499.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene25499.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene25499.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene25499.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene25499.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene25499.t1 | AT3G47550 | 54.392 | 296 | 113 | 7 | 1 | 285 | 1 | 285 | 4.11e-90 | 270 |
| MS.gene25499.t1 | AT3G47550 | 54.392 | 296 | 113 | 7 | 1 | 285 | 1 | 285 | 4.11e-90 | 270 |
| MS.gene25499.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.20e-86 | 259 |
| MS.gene25499.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.20e-86 | 259 |
| MS.gene25499.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.20e-86 | 259 |
| MS.gene25499.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 81 | 314 | 2.43e-86 | 261 |
| MS.gene25499.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 68 | 301 | 2.74e-86 | 261 |
| MS.gene25499.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 68 | 301 | 2.74e-86 | 261 |
| MS.gene25499.t1 | AT3G47550 | 54.582 | 251 | 94 | 6 | 1 | 242 | 1 | 240 | 1.65e-77 | 236 |
| MS.gene25499.t1 | AT2G02960 | 71.812 | 149 | 37 | 2 | 57 | 205 | 33 | 176 | 1.87e-64 | 204 |
| MS.gene25499.t1 | AT3G47550 | 50.218 | 229 | 94 | 6 | 1 | 220 | 1 | 218 | 3.13e-60 | 191 |
| MS.gene25499.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.70e-53 | 175 |
| MS.gene25499.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.70e-53 | 175 |
| MS.gene25499.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.70e-53 | 175 |
| MS.gene25499.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 27 | 251 | 1.88e-53 | 176 |
| MS.gene25499.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 27 | 251 | 1.88e-53 | 176 |
| MS.gene25499.t1 | AT5G38070 | 36.255 | 251 | 137 | 5 | 1 | 251 | 1 | 228 | 4.52e-42 | 145 |
| MS.gene25499.t1 | AT4G02075 | 36.702 | 188 | 102 | 4 | 64 | 249 | 14 | 186 | 1.07e-33 | 122 |
| MS.gene25499.t1 | AT4G02075 | 36.702 | 188 | 102 | 4 | 64 | 249 | 14 | 186 | 1.43e-33 | 122 |
| MS.gene25499.t1 | AT1G02610 | 34.375 | 192 | 119 | 3 | 58 | 249 | 9 | 193 | 5.45e-32 | 117 |
| MS.gene25499.t1 | AT1G02610 | 34.375 | 192 | 119 | 3 | 58 | 249 | 9 | 193 | 5.67e-32 | 118 |
| MS.gene25499.t1 | AT4G02075 | 39.024 | 164 | 82 | 4 | 64 | 223 | 14 | 163 | 1.71e-26 | 102 |
| MS.gene25499.t1 | AT4G32670 | 38.462 | 91 | 49 | 3 | 45 | 132 | 12 | 98 | 1.58e-11 | 65.1 |
| MS.gene25499.t1 | AT4G32670 | 38.462 | 91 | 49 | 3 | 45 | 132 | 12 | 98 | 1.58e-11 | 65.1 |
Find 89 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCGTGCCTCAAGAGTAAA+AGG | 0.240504 | 8.2:+41968613 | None:intergenic |
| CATTCACCGGCGGGGCCTTC+GGG | 0.261603 | 8.2:-41970347 | MS.gene25499:CDS |
| TCATTCACCGGCGGGGCCTT+CGG | 0.272228 | 8.2:-41970348 | MS.gene25499:CDS |
| ATACAAACTACACTTGTTCT+TGG | 0.295160 | 8.2:+41967996 | None:intergenic |
| CAACGCTGGTGCAACGAAAA+AGG | 0.305135 | 8.2:-41969438 | MS.gene25499:CDS |
| CATATTCAGCTTCGAAGAAT+TGG | 0.316433 | 8.2:+41968889 | None:intergenic |
| GGAGGATGGGATTGATAATC+TGG | 0.321342 | 8.2:-41970234 | MS.gene25499:CDS |
| GAAGAAACTACCATTGATAT+AGG | 0.327532 | 8.2:-41969122 | MS.gene25499:CDS |
| GTTGCTTTCGTGCTACAATC+TGG | 0.341099 | 8.2:-41968079 | MS.gene25499:CDS |
| ATATCAATGGTAGTTTCTTC+AGG | 0.355321 | 8.2:+41969125 | None:intergenic |
| GACACTCTCTGGCACGCCTT+TGG | 0.362869 | 8.2:-41968955 | MS.gene25499:CDS |
| ATCACCGGCGGCATCGGTTC+AGG | 0.365743 | 8.2:+41970371 | None:intergenic |
| CACGGTTGCTGCTGGTGTTA+TGG | 0.367886 | 8.2:+41968033 | None:intergenic |
| TACCTTGCTATATCATGGCT+TGG | 0.375698 | 8.2:-41968397 | MS.gene25499:CDS |
| CGCCTGTAGCGGAAGTCTTA+AGG | 0.384567 | 8.2:-41970201 | MS.gene25499:intron |
| TGTTGAGCCAACGGCTCAAC+CGG | 0.390160 | 8.2:+41970410 | None:intergenic |
| AACATTCTTGCAGCGGAGGC+TGG | 0.408803 | 8.2:-41968977 | MS.gene25499:intron |
| ACCTTGCTATATCATGGCTT+GGG | 0.419793 | 8.2:-41968396 | MS.gene25499:CDS |
| AGCGGAGGCTGGACACTCTC+TGG | 0.428867 | 8.2:-41968966 | MS.gene25499:CDS |
| AAGAAACTACCATTGATATA+GGG | 0.430184 | 8.2:-41969121 | MS.gene25499:intron |
| TTGGTGTGGGTGCGGATTCA+CGG | 0.440637 | 8.2:+41968015 | None:intergenic |
| CGATCATGTGGTGTTGTTTG+TGG | 0.440955 | 8.2:-41970453 | MS.gene25499:CDS |
| TCGATTAATGCGACCGATGC+CGG | 0.461813 | 8.2:-41970429 | MS.gene25499:CDS |
| TGCGGATTCACGGTTGCTGC+TGG | 0.464087 | 8.2:+41968025 | None:intergenic |
| GGCGGCATCGGTTCAGGAGC+AGG | 0.464476 | 8.2:+41970377 | None:intergenic |
| GGTGGTGGAGCAATATAATC+AGG | 0.464702 | 8.2:+41969158 | None:intergenic |
| GGTTCAGGAGCAGGCTGAGC+CGG | 0.472619 | 8.2:+41970386 | None:intergenic |
| GCTACAATCTGGGCAGCATA+GGG | 0.473645 | 8.2:-41968068 | MS.gene25499:CDS |
| ACCGATGCCGGTTGAGCCGT+TGG | 0.474368 | 8.2:-41970417 | MS.gene25499:CDS |
| AACATGTGAAATTTGTCATA+AGG | 0.477069 | 8.2:-41969409 | MS.gene25499:intron |
| CGAGCCGCTGTTGCAGCAGA+TGG | 0.477787 | 8.2:-41970285 | MS.gene25499:CDS |
| TGAGCCGTTGGCTCAACATC+CGG | 0.480048 | 8.2:-41970405 | MS.gene25499:CDS |
| TCAGGATGTGGACGAGGTGG+TGG | 0.480833 | 8.2:+41969143 | None:intergenic |
| ACAGGAGGCTGCAGCATTGG+CGG | 0.488662 | 8.2:-41968110 | MS.gene25499:intron |
| GGCTGAGTGTAGGATTTGTC+AGG | 0.492601 | 8.2:-41970258 | MS.gene25499:CDS |
| ATTGTAGCACGAAAGCAACT+TGG | 0.495200 | 8.2:+41968083 | None:intergenic |
| TTCGGGTTCTTCCTCAGCGA+CGG | 0.495394 | 8.2:-41970330 | MS.gene25499:CDS |
| AATACAGGAGGCTGCAGCAT+TGG | 0.499752 | 8.2:-41968113 | MS.gene25499:intron |
| CTTGCGTGATCCTCGATTGT+TGG | 0.500268 | 8.2:-41968931 | MS.gene25499:CDS |
| AGGATTTGTCAGGAGGAGGA+TGG | 0.500614 | 8.2:-41970248 | MS.gene25499:CDS |
| TTGCTTTCGTGCTACAATCT+GGG | 0.503156 | 8.2:-41968078 | MS.gene25499:CDS |
| TACCTTAAGACTTCCGCTAC+AGG | 0.504196 | 8.2:+41970199 | None:intergenic |
| GGATTTGTCAGGAGGAGGAT+GGG | 0.506006 | 8.2:-41970247 | MS.gene25499:CDS |
| ATGGTAGTTTCTTCAGGATG+TGG | 0.506061 | 8.2:+41969131 | None:intergenic |
| ACTTGTTCTTGGTGTGGGTG+CGG | 0.506923 | 8.2:+41968007 | None:intergenic |
| GAATGAATCACCGGCGGCAT+CGG | 0.507695 | 8.2:+41970365 | None:intergenic |
| CCGGTGATTCATTCACCGGC+GGG | 0.516096 | 8.2:-41970356 | MS.gene25499:CDS |
| GAGGCACGCGCTTTCTGTCA+CGG | 0.518453 | 8.2:-41968601 | MS.gene25499:CDS |
| TTCTTCGAAGCTGAATATGA+TGG | 0.519355 | 8.2:-41968885 | MS.gene25499:CDS |
| ATCTCCATCTGCTGCAACAG+CGG | 0.524481 | 8.2:+41970281 | None:intergenic |
| AACTACACTTGTTCTTGGTG+TGG | 0.527387 | 8.2:+41968001 | None:intergenic |
| TTAATCTTACCCTATATCAA+TGG | 0.530350 | 8.2:+41969112 | None:intergenic |
| TGCTCCTGAACCGATGCCGC+CGG | 0.532957 | 8.2:-41970375 | MS.gene25499:CDS |
| GCCGCCGGTGATTCATTCAC+CGG | 0.534985 | 8.2:-41970360 | MS.gene25499:CDS |
| AGCAATATAATCAGGTTCAT+AGG | 0.549152 | 8.2:+41969166 | None:intergenic |
| ATAGAAAGTGCGTCCAACGC+TGG | 0.549813 | 8.2:-41969452 | MS.gene25499:CDS |
| TGCTACAATCTGGGCAGCAT+AGG | 0.553716 | 8.2:-41968069 | MS.gene25499:CDS |
| ACTACACTTGTTCTTGGTGT+GGG | 0.560807 | 8.2:+41968002 | None:intergenic |
| ACGGCAAAATGCAGCTCCGT+TGG | 0.561312 | 8.2:+41968845 | None:intergenic |
| GCCAACGGCTCAACCGGCAT+CGG | 0.561647 | 8.2:+41970416 | None:intergenic |
| GTTTCTTCAGGATGTGGACG+AGG | 0.562462 | 8.2:+41969137 | None:intergenic |
| GAAGAACCCGAAGGCCCCGC+CGG | 0.568091 | 8.2:+41970341 | None:intergenic |
| AGACTTCCGCTACAGGCGCA+AGG | 0.568684 | 8.2:+41970206 | None:intergenic |
| TTGTAGCACGAAAGCAACTT+GGG | 0.569577 | 8.2:+41968084 | None:intergenic |
| CCCGCCGGTGAATGAATCAC+CGG | 0.578619 | 8.2:+41970356 | None:intergenic |
| GTGTAGGATTTGTCAGGAGG+AGG | 0.581312 | 8.2:-41970252 | MS.gene25499:CDS |
| TGAGCCGGATGTTGAGCCAA+CGG | 0.587025 | 8.2:+41970401 | None:intergenic |
| GCTGTTGCAGCAGATGGAGA+TGG | 0.590554 | 8.2:-41970279 | MS.gene25499:CDS |
| GCCGGTGATTCATTCACCGG+CGG | 0.593871 | 8.2:-41970357 | MS.gene25499:CDS |
| GAAAATCCTTGCGCCTGTAG+CGG | 0.596482 | 8.2:-41970212 | MS.gene25499:CDS |
| ATCGTCATCATCCGTCGCTG+AGG | 0.600354 | 8.2:+41970319 | None:intergenic |
| AGATGGAGATGGCTGAGTGT+AGG | 0.601452 | 8.2:-41970268 | MS.gene25499:CDS |
| TCGATTGTTGGCAATTGCAG+AGG | 0.603328 | 8.2:-41968919 | MS.gene25499:CDS |
| GCGACGGATGATGACGATGT+CGG | 0.605629 | 8.2:-41970314 | MS.gene25499:CDS |
| TTACGATCAGAGCAGCTGAA+CGG | 0.606397 | 8.2:+41968826 | None:intergenic |
| CGCGTGCCTCAAGAGTAAAA+GGG | 0.611961 | 8.2:+41968614 | None:intergenic |
| CGAGGATCACGCAAGTCCAA+AGG | 0.614034 | 8.2:+41968939 | None:intergenic |
| TCTTCAGGATGTGGACGAGG+TGG | 0.627168 | 8.2:+41969140 | None:intergenic |
| GCCCAAGCCATGATATAGCA+AGG | 0.629507 | 8.2:+41968395 | None:intergenic |
| TCTGCAATTGCCAACAATCG+AGG | 0.633472 | 8.2:+41968921 | None:intergenic |
| TATGCTGCTTCTAATGCCAA+CGG | 0.637155 | 8.2:-41968861 | MS.gene25499:CDS |
| TGAGTGTAGGATTTGTCAGG+AGG | 0.657795 | 8.2:-41970255 | MS.gene25499:CDS |
| GTCGCTGAGGAAGAACCCGA+AGG | 0.660296 | 8.2:+41970332 | None:intergenic |
| TGAATCAATGAGCGATCATG+TGG | 0.669095 | 8.2:-41970465 | None:intergenic |
| GCCGGTGAATGAATCACCGG+CGG | 0.674003 | 8.2:+41970359 | None:intergenic |
| GGATGATGACGATGTCGGCG+AGG | 0.685342 | 8.2:-41970309 | MS.gene25499:CDS |
| GCAAGGTAAAAGAAAGCCAG+CGG | 0.689230 | 8.2:+41968412 | None:intergenic |
| CTACAATCTGGGCAGCATAG+GGG | 0.695813 | 8.2:-41968067 | MS.gene25499:CDS |
| CGGTGATTCATTCACCGGCG+GGG | 0.714860 | 8.2:-41970355 | MS.gene25499:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTAAATGATACA+TGG | - | chr8.2:41968380-41968399 | MS.gene25499:CDS | 10.0% |
| !! | ATAAACTTTATACAATTGAT+GGG | - | chr8.2:41969956-41969975 | MS.gene25499:intron | 15.0% |
| !! | ATACAAATAATCAGTTAAAA+AGG | + | chr8.2:41969678-41969697 | None:intergenic | 15.0% |
| !! | TATAAACTTTATACAATTGA+TGG | - | chr8.2:41969955-41969974 | MS.gene25499:intron | 15.0% |
| !!! | TAATAATAAATTTGCTTACA+AGG | - | chr8.2:41968605-41968624 | MS.gene25499:CDS | 15.0% |
| !! | AACTGATTATTTGTATAATC+CGG | - | chr8.2:41969682-41969701 | MS.gene25499:intron | 20.0% |
| !! | ATGTATATCATAACATTGTA+TGG | - | chr8.2:41969100-41969119 | MS.gene25499:intron | 20.0% |
| !!! | ATTCTTATCATTTCATGTTT+TGG | - | chr8.2:41970324-41970343 | MS.gene25499:CDS | 20.0% |
| !!! | TGTTACAAATTTCATGTTTT+AGG | - | chr8.2:41968304-41968323 | MS.gene25499:intron | 20.0% |
| ! | AACATGTGAAATTTGTCATA+AGG | - | chr8.2:41969052-41969071 | MS.gene25499:intron | 25.0% |
| ! | AAGAAACTACCATTGATATA+GGG | - | chr8.2:41969340-41969359 | MS.gene25499:intron | 25.0% |
| ! | AAGAATTAACATAGCAAAGT+GGG | - | chr8.2:41968729-41968748 | MS.gene25499:intron | 25.0% |
| ! | ATGTATAACCATAATTCTTG+AGG | + | chr8.2:41969399-41969418 | None:intergenic | 25.0% |
| ! | CATTTACAAAATTGTATGTC+TGG | + | chr8.2:41969723-41969742 | None:intergenic | 25.0% |
| ! | TAAGAATTAACATAGCAAAG+TGG | - | chr8.2:41968728-41968747 | MS.gene25499:intron | 25.0% |
| ! | TATTAAATGATACATGGATG+TGG | - | chr8.2:41968386-41968405 | MS.gene25499:CDS | 25.0% |
| ! | TGAAATGATAAGAATACTGT+AGG | + | chr8.2:41970319-41970338 | None:intergenic | 25.0% |
| ! | TGTATAACCATAATTCTTGA+GGG | + | chr8.2:41969398-41969417 | None:intergenic | 25.0% |
| ! | TTAATCTTACCCTATATCAA+TGG | + | chr8.2:41969352-41969371 | None:intergenic | 25.0% |
| ! | TTATAAACTACATAGACAGA+AGG | + | chr8.2:41969940-41969959 | None:intergenic | 25.0% |
| ! | TTATGTAAGTGTCAAAAGAT+TGG | + | chr8.2:41968840-41968859 | None:intergenic | 25.0% |
| ! | TTTATTCTGTTATGCTTTGA+TGG | - | chr8.2:41968442-41968461 | MS.gene25499:intron | 25.0% |
| ! | TTTCATCACATAGATAATTG+CGG | - | chr8.2:41968697-41968716 | MS.gene25499:intron | 25.0% |
| ! | TTTCGTAAATAACAATGTCT+AGG | + | chr8.2:41970175-41970194 | None:intergenic | 25.0% |
| !! | CAATTTTGTAAATGAACTCT+AGG | - | chr8.2:41969729-41969748 | MS.gene25499:intron | 25.0% |
| !!! | ATTTCATGTTTTGGTAATAC+AGG | - | chr8.2:41970333-41970352 | MS.gene25499:CDS | 25.0% |
| !!! | CATTGTATGGTTTTGTTTAT+AGG | - | chr8.2:41969113-41969132 | MS.gene25499:intron | 25.0% |
| !!! | GTTAAACAATTTTAACGAAC+AGG | - | chr8.2:41968502-41968521 | MS.gene25499:intron | 25.0% |
| !!! | TACAAATTTCATGTTTTAGG+TGG | - | chr8.2:41968307-41968326 | MS.gene25499:intron | 25.0% |
| ACCAGAACATAGAATGAATT+AGG | + | chr8.2:41969816-41969835 | None:intergenic | 30.0% | |
| AGCAATATAATCAGGTTCAT+AGG | + | chr8.2:41969298-41969317 | None:intergenic | 30.0% | |
| ATATCAATGGTAGTTTCTTC+AGG | + | chr8.2:41969339-41969358 | None:intergenic | 30.0% | |
| CTTACAGAGAAAAACATAGA+TGG | + | chr8.2:41969906-41969925 | None:intergenic | 30.0% | |
| GAAGAAACTACCATTGATAT+AGG | - | chr8.2:41969339-41969358 | MS.gene25499:intron | 30.0% | |
| ! | GGATATTGATTAGATGTGAT+TGG | - | chr8.2:41968750-41968769 | MS.gene25499:intron | 30.0% |
| !! | TCTTTTACCTTGCTATATCA+TGG | - | chr8.2:41970059-41970078 | MS.gene25499:intron | 30.0% |
| !!! | GTATGGTTTTGTTTATAGGT+AGG | - | chr8.2:41969117-41969136 | MS.gene25499:intron | 30.0% |
| AATTGTGAACATTCTTGCAG+CGG | - | chr8.2:41969477-41969496 | MS.gene25499:intron | 35.0% | |
| ACGTCTTTGATCTTAAGTGT+CGG | - | chr8.2:41970222-41970241 | MS.gene25499:CDS | 35.0% | |
| ATCAGTTAAAAAGGACTGCT+TGG | + | chr8.2:41969669-41969688 | None:intergenic | 35.0% | |
| ATGATACATGGATGTGGAAA+AGG | - | chr8.2:41968392-41968411 | MS.gene25499:CDS | 35.0% | |
| CATATTCAGCTTCGAAGAAT+TGG | + | chr8.2:41969575-41969594 | None:intergenic | 35.0% | |
| CATTGATGTTAGAGAGCTAT+TGG | - | chr8.2:41968527-41968546 | MS.gene25499:intron | 35.0% | |
| GCCTAATTCATTCTATGTTC+TGG | - | chr8.2:41969812-41969831 | MS.gene25499:intron | 35.0% | |
| TAGTCTTCCCTCAAGAATTA+TGG | - | chr8.2:41969388-41969407 | MS.gene25499:intron | 35.0% | |
| TATCCAGCAGTTCGTAAATT+AGG | + | chr8.2:41968971-41968990 | None:intergenic | 35.0% | |
| TGCTTTCAAATATGTTGTCG+AGG | - | chr8.2:41969980-41969999 | MS.gene25499:intron | 35.0% | |
| TTAGGAGGACATAAATAGAG+AGG | + | chr8.2:41968953-41968972 | None:intergenic | 35.0% | |
| TTCTTCGAAGCTGAATATGA+TGG | - | chr8.2:41969576-41969595 | MS.gene25499:intron | 35.0% | |
| ! | ATATCTCTTGCTCCTTTTTC+CGG | - | chr8.2:41970267-41970286 | MS.gene25499:CDS | 35.0% |
| ! | CAATCAGTATTTTGCAACGA+CGG | - | chr8.2:41970088-41970107 | MS.gene25499:intron | 35.0% |
| ! | CATGCACATTGACTATGATA+GGG | - | chr8.2:41969757-41969776 | MS.gene25499:intron | 35.0% |
| ! | GCTTACAAGGTTTTCTTCAT+AGG | - | chr8.2:41968618-41968637 | MS.gene25499:CDS | 35.0% |
| ! | GGAACAATGCTTTTGTGTAT+GGG | - | chr8.2:41968917-41968936 | MS.gene25499:CDS | 35.0% |
| ! | GTCTAGGACATGAACAAATA+TGG | + | chr8.2:41970159-41970178 | None:intergenic | 35.0% |
| ! | TCATGCACATTGACTATGAT+AGG | - | chr8.2:41969756-41969775 | MS.gene25499:intron | 35.0% |
| !! | ATACACAAAAGCATTGTTCC+CGG | + | chr8.2:41968917-41968936 | None:intergenic | 35.0% |
| !!! | TCATGTTTTGGTAATACAGG+AGG | - | chr8.2:41970336-41970355 | MS.gene25499:CDS | 35.0% |
| AGCAATCTGTTTCAAGCTGA+TGG | - | chr8.2:41969420-41969439 | MS.gene25499:CDS | 40.0% | |
| ATGGTAGTTTCTTCAGGATG+TGG | + | chr8.2:41969333-41969352 | None:intergenic | 40.0% | |
| ATTGTAGCACGAAAGCAACT+TGG | + | chr8.2:41970381-41970400 | None:intergenic | 40.0% | |
| CTATGTTCTGGTGCAGTTAA+TGG | - | chr8.2:41969824-41969843 | MS.gene25499:intron | 40.0% | |
| TCAAACACGCTCTTAGTAAC+CGG | - | chr8.2:41968895-41968914 | MS.gene25499:CDS | 40.0% | |
| TGTTGCATATTCCCGGAAAA+AGG | + | chr8.2:41970282-41970301 | None:intergenic | 40.0% | |
| TTGCTTTCGTGCTACAATCT+GGG | - | chr8.2:41970383-41970402 | MS.gene25499:CDS | 40.0% | |
| TTGTAGCACGAAAGCAACTT+GGG | + | chr8.2:41970380-41970399 | None:intergenic | 40.0% | |
| ! | ACCTTGCTATATCATGGCTT+GGG | - | chr8.2:41970065-41970084 | MS.gene25499:intron | 40.0% |
| ! | CAAGGTTTTCTTCATAGGCT+TGG | - | chr8.2:41968623-41968642 | MS.gene25499:CDS | 40.0% |
| ! | CTCTATCTGTGTTTTGTGCA+AGG | + | chr8.2:41968805-41968824 | None:intergenic | 40.0% |
| ! | CTGCATTTGTTGCATATTCC+CGG | + | chr8.2:41970289-41970308 | None:intergenic | 40.0% |
| ! | GGGAACAATGCTTTTGTGTA+TGG | - | chr8.2:41968916-41968935 | MS.gene25499:CDS | 40.0% |
| ! | TAATGGCCCTTTTACTCTTG+AGG | - | chr8.2:41969841-41969860 | MS.gene25499:intron | 40.0% |
| ! | TACCTTGCTATATCATGGCT+TGG | - | chr8.2:41970064-41970083 | MS.gene25499:intron | 40.0% |
| ! | TATCTCTTGCTCCTTTTTCC+GGG | - | chr8.2:41970268-41970287 | MS.gene25499:CDS | 40.0% |
| ! | TATGCTGCTTCTAATGCCAA+CGG | - | chr8.2:41969600-41969619 | MS.gene25499:intron | 40.0% |
| ! | TGCTTTTGTGTATGGGACAT+TGG | - | chr8.2:41968924-41968943 | MS.gene25499:CDS | 40.0% |
| !! | AATTCACACAGAGAGTGCTT+TGG | + | chr8.2:41969213-41969232 | None:intergenic | 40.0% |
| CAAACACGCTCTTAGTAACC+GGG | - | chr8.2:41968896-41968915 | MS.gene25499:CDS | 45.0% | |
| CCAGCAGTTCGTAAATTAGG+AGG | + | chr8.2:41968968-41968987 | None:intergenic | 45.0% | |
| CCTCCTAATTTACGAACTGC+TGG | - | chr8.2:41968965-41968984 | MS.gene25499:CDS | 45.0% | |
| GCAAGGTAAAAGAAAGCCAG+CGG | + | chr8.2:41970052-41970071 | None:intergenic | 45.0% | |
| GGGTGCTAACACTTTACACT+TGG | - | chr8.2:41969777-41969796 | MS.gene25499:intron | 45.0% | |
| TACCTTAAGACTTCCGCTAC+AGG | + | chr8.2:41968265-41968284 | None:intergenic | 45.0% | |
| TCGATTGTTGGCAATTGCAG+AGG | - | chr8.2:41969542-41969561 | MS.gene25499:intron | 45.0% | |
| TCTGCAATTGCCAACAATCG+AGG | + | chr8.2:41969543-41969562 | None:intergenic | 45.0% | |
| TGAGTGTAGGATTTGTCAGG+AGG | - | chr8.2:41968206-41968225 | MS.gene25499:intron | 45.0% | |
| TTACGATCAGAGCAGCTGAA+CGG | + | chr8.2:41969638-41969657 | None:intergenic | 45.0% | |
| ! | GGAGGATGGGATTGATAATC+TGG | - | chr8.2:41968227-41968246 | MS.gene25499:intron | 45.0% |
| ! | GTTGCTTTCGTGCTACAATC+TGG | - | chr8.2:41970382-41970401 | MS.gene25499:CDS | 45.0% |
| !! | CGATCATGTGGTGTTGTTTG+TGG | - | chr8.2:41968008-41968027 | MS.gene25499:CDS | 45.0% |
| !! | GGTGGTGGAGCAATATAATC+AGG | + | chr8.2:41969306-41969325 | None:intergenic | 45.0% |
| AATACAGGAGGCTGCAGCAT+TGG | - | chr8.2:41970348-41970367 | MS.gene25499:CDS | 50.0% | |
| AGATGGAGATGGCTGAGTGT+AGG | - | chr8.2:41968193-41968212 | MS.gene25499:intron | 50.0% | |
| AGGATTTGTCAGGAGGAGGA+TGG | - | chr8.2:41968213-41968232 | MS.gene25499:intron | 50.0% | |
| ATCTCCATCTGCTGCAACAG+CGG | + | chr8.2:41968183-41968202 | None:intergenic | 50.0% | |
| CAACGCTGGTGCAACGAAAA+AGG | - | chr8.2:41969023-41969042 | MS.gene25499:intron | 50.0% | |
| CGCGTGCCTCAAGAGTAAAA+GGG | + | chr8.2:41969850-41969869 | None:intergenic | 50.0% | |
| CTACAATCTGGGCAGCATAG+GGG | - | chr8.2:41970394-41970413 | MS.gene25499:CDS | 50.0% | |
| CTGGTGCGCATATACATGAC+CGG | + | chr8.2:41969704-41969723 | None:intergenic | 50.0% | |
| CTTGCGTGATCCTCGATTGT+TGG | - | chr8.2:41969530-41969549 | MS.gene25499:intron | 50.0% | |
| GAAAATCCTTGCGCCTGTAG+CGG | - | chr8.2:41968249-41968268 | MS.gene25499:intron | 50.0% | |
| GCCCAAGCCATGATATAGCA+AGG | + | chr8.2:41970069-41970088 | None:intergenic | 50.0% | |
| GCTACAATCTGGGCAGCATA+GGG | - | chr8.2:41970393-41970412 | MS.gene25499:CDS | 50.0% | |
| GGATTTGTCAGGAGGAGGAT+GGG | - | chr8.2:41968214-41968233 | MS.gene25499:intron | 50.0% | |
| GGCTGAGTGTAGGATTTGTC+AGG | - | chr8.2:41968203-41968222 | MS.gene25499:intron | 50.0% | |
| GTGTAGGATTTGTCAGGAGG+AGG | - | chr8.2:41968209-41968228 | MS.gene25499:intron | 50.0% | |
| GTTTCTTCAGGATGTGGACG+AGG | + | chr8.2:41969327-41969346 | None:intergenic | 50.0% | |
| TCGATTAATGCGACCGATGC+CGG | - | chr8.2:41968032-41968051 | MS.gene25499:CDS | 50.0% | |
| TGCTACAATCTGGGCAGCAT+AGG | - | chr8.2:41970392-41970411 | MS.gene25499:CDS | 50.0% | |
| TGTGAACATTCTTGCAGCGG+AGG | - | chr8.2:41969480-41969499 | MS.gene25499:intron | 50.0% | |
| ! | ACTTGTTCTTGGTGTGGGTG+CGG | + | chr8.2:41970457-41970476 | None:intergenic | 50.0% |
| ! | ATAGAAAGTGCGTCCAACGC+TGG | - | chr8.2:41969009-41969028 | MS.gene25499:intron | 50.0% |
| !! | CTTTTTCGTTGCACCAGCGT+TGG | + | chr8.2:41969025-41969044 | None:intergenic | 50.0% |
| AACATTCTTGCAGCGGAGGC+TGG | - | chr8.2:41969484-41969503 | MS.gene25499:intron | 55.0% | |
| ACGGCAAAATGCAGCTCCGT+TGG | + | chr8.2:41969619-41969638 | None:intergenic | 55.0% | |
| ATCGTCATCATCCGTCGCTG+AGG | + | chr8.2:41968145-41968164 | None:intergenic | 55.0% | |
| CGAGGATCACGCAAGTCCAA+AGG | + | chr8.2:41969525-41969544 | None:intergenic | 55.0% | |
| GAATGAATCACCGGCGGCAT+CGG | + | chr8.2:41968099-41968118 | None:intergenic | 55.0% | |
| GCGCGTGCCTCAAGAGTAAA+AGG | + | chr8.2:41969851-41969870 | None:intergenic | 55.0% | |
| GCTGTTGCAGCAGATGGAGA+TGG | - | chr8.2:41968182-41968201 | MS.gene25499:intron | 55.0% | |
| TCTTCAGGATGTGGACGAGG+TGG | + | chr8.2:41969324-41969343 | None:intergenic | 55.0% | |
| TGAGCCGGATGTTGAGCCAA+CGG | + | chr8.2:41968063-41968082 | None:intergenic | 55.0% | |
| TGTTGAGCCAACGGCTCAAC+CGG | + | chr8.2:41968054-41968073 | None:intergenic | 55.0% | |
| TTGGTGTGGGTGCGGATTCA+CGG | + | chr8.2:41970449-41970468 | None:intergenic | 55.0% | |
| ! | CACGGTTGCTGCTGGTGTTA+TGG | + | chr8.2:41970431-41970450 | None:intergenic | 55.0% |
| ! | CGCCTGTAGCGGAAGTCTTA+AGG | - | chr8.2:41968260-41968279 | MS.gene25499:intron | 55.0% |
| ! | CTTTTCTTGCTTCGAGCCGC+TGG | - | chr8.2:41970033-41970052 | MS.gene25499:intron | 55.0% |
| ! | GCGACGGATGATGACGATGT+CGG | - | chr8.2:41968147-41968166 | MS.gene25499:intron | 55.0% |
| ! | TTCGGGTTCTTCCTCAGCGA+CGG | - | chr8.2:41968131-41968150 | MS.gene25499:intron | 55.0% |
| !! | TGAGCCGTTGGCTCAACATC+CGG | - | chr8.2:41968056-41968075 | MS.gene25499:CDS | 55.0% |
| AGACTTCCGCTACAGGCGCA+AGG | + | chr8.2:41968258-41968277 | None:intergenic | 60.0% | |
| CCCGCCGGTGAATGAATCAC+CGG | + | chr8.2:41968108-41968127 | None:intergenic | 60.0% | |
| CCGGTGATTCATTCACCGGC+GGG | - | chr8.2:41968105-41968124 | MS.gene25499:CDS | 60.0% | |
| CGGTGATTCATTCACCGGCG+GGG | - | chr8.2:41968106-41968125 | MS.gene25499:CDS | 60.0% | |
| GACACTCTCTGGCACGCCTT+TGG | - | chr8.2:41969506-41969525 | MS.gene25499:intron | 60.0% | |
| GAGGCACGCGCTTTCTGTCA+CGG | - | chr8.2:41969860-41969879 | MS.gene25499:intron | 60.0% | |
| GCCGCCGGTGATTCATTCAC+CGG | - | chr8.2:41968101-41968120 | MS.gene25499:CDS | 60.0% | |
| GCCGGTGAATGAATCACCGG+CGG | + | chr8.2:41968105-41968124 | None:intergenic | 60.0% | |
| GCCGGTGATTCATTCACCGG+CGG | - | chr8.2:41968104-41968123 | MS.gene25499:CDS | 60.0% | |
| GTCGCTGAGGAAGAACCCGA+AGG | + | chr8.2:41968132-41968151 | None:intergenic | 60.0% | |
| TCAGGATGTGGACGAGGTGG+TGG | + | chr8.2:41969321-41969340 | None:intergenic | 60.0% | |
| TGCGGATTCACGGTTGCTGC+TGG | + | chr8.2:41970439-41970458 | None:intergenic | 60.0% | |
| ! | ACAGGAGGCTGCAGCATTGG+CGG | - | chr8.2:41970351-41970370 | MS.gene25499:CDS | 60.0% |
| ! | GGATGATGACGATGTCGGCG+AGG | - | chr8.2:41968152-41968171 | MS.gene25499:intron | 60.0% |
| AGCGGAGGCTGGACACTCTC+TGG | - | chr8.2:41969495-41969514 | MS.gene25499:intron | 65.0% | |
| CGAGCCGCTGTTGCAGCAGA+TGG | - | chr8.2:41968176-41968195 | MS.gene25499:intron | 65.0% | |
| GCCAACGGCTCAACCGGCAT+CGG | + | chr8.2:41968048-41968067 | None:intergenic | 65.0% | |
| GGTTCAGGAGCAGGCTGAGC+CGG | + | chr8.2:41968078-41968097 | None:intergenic | 65.0% | |
| TCATTCACCGGCGGGGCCTT+CGG | - | chr8.2:41968113-41968132 | MS.gene25499:intron | 65.0% | |
| TGCTCCTGAACCGATGCCGC+CGG | - | chr8.2:41968086-41968105 | MS.gene25499:CDS | 65.0% | |
| ! | ACCGATGCCGGTTGAGCCGT+TGG | - | chr8.2:41968044-41968063 | MS.gene25499:CDS | 65.0% |
| !! | ATCACCGGCGGCATCGGTTC+AGG | + | chr8.2:41968093-41968112 | None:intergenic | 65.0% |
| CATTCACCGGCGGGGCCTTC+GGG | - | chr8.2:41968114-41968133 | MS.gene25499:intron | 70.0% | |
| GAAGAACCCGAAGGCCCCGC+CGG | + | chr8.2:41968123-41968142 | None:intergenic | 70.0% | |
| !! | GGCGGCATCGGTTCAGGAGC+AGG | + | chr8.2:41968087-41968106 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 41968003 | 41970480 | 41968003 | ID=MS.gene25499 |
| chr8.2 | mRNA | 41968003 | 41970480 | 41968003 | ID=MS.gene25499.t1;Parent=MS.gene25499 |
| chr8.2 | exon | 41970202 | 41970480 | 41970202 | ID=MS.gene25499.t1.exon1;Parent=MS.gene25499.t1 |
| chr8.2 | CDS | 41970202 | 41970480 | 41970202 | ID=cds.MS.gene25499.t1;Parent=MS.gene25499.t1 |
| chr8.2 | exon | 41969410 | 41969481 | 41969410 | ID=MS.gene25499.t1.exon2;Parent=MS.gene25499.t1 |
| chr8.2 | CDS | 41969410 | 41969481 | 41969410 | ID=cds.MS.gene25499.t1;Parent=MS.gene25499.t1 |
| chr8.2 | exon | 41969122 | 41969189 | 41969122 | ID=MS.gene25499.t1.exon3;Parent=MS.gene25499.t1 |
| chr8.2 | CDS | 41969122 | 41969189 | 41969122 | ID=cds.MS.gene25499.t1;Parent=MS.gene25499.t1 |
| chr8.2 | exon | 41968830 | 41968986 | 41968830 | ID=MS.gene25499.t1.exon4;Parent=MS.gene25499.t1 |
| chr8.2 | CDS | 41968830 | 41968986 | 41968830 | ID=cds.MS.gene25499.t1;Parent=MS.gene25499.t1 |
| chr8.2 | exon | 41968563 | 41968643 | 41968563 | ID=MS.gene25499.t1.exon5;Parent=MS.gene25499.t1 |
| chr8.2 | CDS | 41968563 | 41968643 | 41968563 | ID=cds.MS.gene25499.t1;Parent=MS.gene25499.t1 |
| chr8.2 | exon | 41968361 | 41968450 | 41968361 | ID=MS.gene25499.t1.exon6;Parent=MS.gene25499.t1 |
| chr8.2 | CDS | 41968361 | 41968450 | 41968361 | ID=cds.MS.gene25499.t1;Parent=MS.gene25499.t1 |
| chr8.2 | exon | 41968003 | 41968128 | 41968003 | ID=MS.gene25499.t1.exon7;Parent=MS.gene25499.t1 |
| chr8.2 | CDS | 41968003 | 41968128 | 41968003 | ID=cds.MS.gene25499.t1;Parent=MS.gene25499.t1 |
| Gene Sequence |
| Protein sequence |
