Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34660.t1 | XP_013445694.1 | 92.1 | 290 | 18 | 3 | 1 | 290 | 1 | 285 | 3.50E-143 | 517.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34660.t1 | F4JKK0 | 35.4 | 96 | 50 | 3 | 40 | 132 | 47 | 133 | 3.1e-07 | 57.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34660.t1 | A0A072U1P4 | 92.1 | 290 | 18 | 3 | 1 | 290 | 1 | 285 | 2.5e-143 | 517.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032904 | MS.gene34660 | PPI |
| MS.gene34660 | MS.gene032904 | PPI |
| MS.gene070573 | MS.gene34660 | PPI |
| MS.gene36852 | MS.gene34660 | PPI |
| MS.gene25499 | MS.gene34660 | PPI |
| MS.gene045950 | MS.gene34660 | PPI |
| MS.gene55219 | MS.gene34660 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34660.t1 | MTR_8g467220 | 96.552 | 290 | 5 | 3 | 1 | 290 | 1 | 285 | 0.0 | 564 |
| MS.gene34660.t1 | MTR_5g040650 | 73.986 | 296 | 65 | 7 | 1 | 290 | 1 | 290 | 2.27e-125 | 359 |
| MS.gene34660.t1 | MTR_5g040650 | 74.510 | 255 | 54 | 6 | 1 | 249 | 1 | 250 | 8.60e-112 | 323 |
| MS.gene34660.t1 | MTR_1g108490 | 37.500 | 264 | 140 | 5 | 1 | 257 | 1 | 246 | 1.33e-57 | 186 |
| MS.gene34660.t1 | MTR_1g108490 | 38.095 | 231 | 117 | 5 | 1 | 226 | 1 | 210 | 7.79e-48 | 159 |
| MS.gene34660.t1 | MTR_7g109460 | 39.037 | 187 | 101 | 5 | 67 | 249 | 17 | 194 | 4.99e-39 | 136 |
| MS.gene34660.t1 | MTR_7g082950 | 35.897 | 195 | 111 | 7 | 68 | 258 | 14 | 198 | 9.32e-38 | 133 |
| MS.gene34660.t1 | MTR_7g082950 | 42.029 | 138 | 71 | 4 | 68 | 205 | 14 | 142 | 1.26e-33 | 120 |
| MS.gene34660.t1 | MTR_7g109460 | 39.490 | 157 | 83 | 4 | 67 | 220 | 17 | 164 | 2.84e-32 | 117 |
| MS.gene34660.t1 | MTR_1g087150 | 42.771 | 166 | 88 | 4 | 67 | 227 | 17 | 180 | 1.79e-31 | 117 |
| MS.gene34660.t1 | MTR_1g087150 | 42.771 | 166 | 88 | 4 | 67 | 227 | 17 | 180 | 6.56e-31 | 115 |
| MS.gene34660.t1 | MTR_7g010610 | 49.275 | 69 | 35 | 0 | 66 | 134 | 31 | 99 | 2.25e-18 | 80.9 |
| MS.gene34660.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 4.33e-11 | 63.5 |
| MS.gene34660.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 5.01e-11 | 63.2 |
| MS.gene34660.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 5.91e-11 | 62.8 |
| MS.gene34660.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 7.03e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34660.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene34660.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene34660.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene34660.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene34660.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene34660.t1 | AT3G47550 | 54.392 | 296 | 113 | 7 | 1 | 285 | 1 | 285 | 4.11e-90 | 270 |
| MS.gene34660.t1 | AT3G47550 | 54.392 | 296 | 113 | 7 | 1 | 285 | 1 | 285 | 4.11e-90 | 270 |
| MS.gene34660.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.20e-86 | 259 |
| MS.gene34660.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.20e-86 | 259 |
| MS.gene34660.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.20e-86 | 259 |
| MS.gene34660.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 81 | 314 | 2.43e-86 | 261 |
| MS.gene34660.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 68 | 301 | 2.74e-86 | 261 |
| MS.gene34660.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 68 | 301 | 2.74e-86 | 261 |
| MS.gene34660.t1 | AT3G47550 | 54.582 | 251 | 94 | 6 | 1 | 242 | 1 | 240 | 1.65e-77 | 236 |
| MS.gene34660.t1 | AT2G02960 | 71.812 | 149 | 37 | 2 | 57 | 205 | 33 | 176 | 1.87e-64 | 204 |
| MS.gene34660.t1 | AT3G47550 | 50.218 | 229 | 94 | 6 | 1 | 220 | 1 | 218 | 3.13e-60 | 191 |
| MS.gene34660.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.70e-53 | 175 |
| MS.gene34660.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.70e-53 | 175 |
| MS.gene34660.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.70e-53 | 175 |
| MS.gene34660.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 27 | 251 | 1.88e-53 | 176 |
| MS.gene34660.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 27 | 251 | 1.88e-53 | 176 |
| MS.gene34660.t1 | AT5G38070 | 36.255 | 251 | 137 | 5 | 1 | 251 | 1 | 228 | 4.52e-42 | 145 |
| MS.gene34660.t1 | AT4G02075 | 36.702 | 188 | 102 | 4 | 64 | 249 | 14 | 186 | 1.07e-33 | 122 |
| MS.gene34660.t1 | AT4G02075 | 36.702 | 188 | 102 | 4 | 64 | 249 | 14 | 186 | 1.43e-33 | 122 |
| MS.gene34660.t1 | AT1G02610 | 34.375 | 192 | 119 | 3 | 58 | 249 | 9 | 193 | 5.45e-32 | 117 |
| MS.gene34660.t1 | AT1G02610 | 34.375 | 192 | 119 | 3 | 58 | 249 | 9 | 193 | 5.67e-32 | 118 |
| MS.gene34660.t1 | AT4G02075 | 39.024 | 164 | 82 | 4 | 64 | 223 | 14 | 163 | 1.71e-26 | 102 |
| MS.gene34660.t1 | AT4G32670 | 38.462 | 91 | 49 | 3 | 45 | 132 | 12 | 98 | 1.58e-11 | 65.1 |
| MS.gene34660.t1 | AT4G32670 | 38.462 | 91 | 49 | 3 | 45 | 132 | 12 | 98 | 1.58e-11 | 65.1 |
Find 89 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCGTGCCTCAAGAGTAAA+AGG | 0.240504 | 8.1:+46542653 | None:intergenic |
| CATTCACCGGCGGGGCCTTC+GGG | 0.261603 | 8.1:-46544394 | MS.gene34660:CDS |
| TCATTCACCGGCGGGGCCTT+CGG | 0.272228 | 8.1:-46544395 | MS.gene34660:CDS |
| ATACAAACTACACTTGTTCT+TGG | 0.295160 | 8.1:+46542036 | None:intergenic |
| CAACGCTGGTGCAACGAAAA+AGG | 0.305135 | 8.1:-46543478 | MS.gene34660:CDS |
| CATATTCAGCTTCGAAGAAT+TGG | 0.316433 | 8.1:+46542929 | None:intergenic |
| GAAGAAACTACCATTGATAT+AGG | 0.327532 | 8.1:-46543162 | MS.gene34660:CDS |
| GTTGCTTTCGTGCTACAATC+TGG | 0.341099 | 8.1:-46542119 | MS.gene34660:CDS |
| ATATCAATGGTAGTTTCTTC+AGG | 0.355321 | 8.1:+46543165 | None:intergenic |
| GACACTCTCTGGCACGCCTT+TGG | 0.362869 | 8.1:-46542995 | MS.gene34660:CDS |
| GGAGGATGGGATTGATAATC+TGG | 0.364205 | 8.1:-46544281 | MS.gene34660:CDS |
| CACGGTTGCTGCTGGTGTTA+TGG | 0.367886 | 8.1:+46542073 | None:intergenic |
| TACCTTGCTATATCATGGCT+TGG | 0.375698 | 8.1:-46542437 | MS.gene34660:CDS |
| TGTTGAGCCAACGGCTCAAC+AGG | 0.376331 | 8.1:+46544457 | None:intergenic |
| CGCCTGTAGCGGAAGTCTTA+AGG | 0.384567 | 8.1:-46544248 | MS.gene34660:intron |
| ACCTTGCTATATCATGGCTT+GGG | 0.419793 | 8.1:-46542436 | MS.gene34660:CDS |
| AAGAAACTACCATTGATATA+GGG | 0.430184 | 8.1:-46543161 | MS.gene34660:intron |
| AGTGGAGGCTGGACACTCTC+TGG | 0.436258 | 8.1:-46543006 | MS.gene34660:CDS |
| TTGGTGTGGGTGCGGATTCA+CGG | 0.440637 | 8.1:+46542055 | None:intergenic |
| CGATCATGTGGTGTTGTTTG+TGG | 0.440955 | 8.1:-46544500 | MS.gene34660:CDS |
| AACATTCTTGCAGTGGAGGC+TGG | 0.441526 | 8.1:-46543017 | MS.gene34660:intron |
| GGCTCAGGAGCAGGTTGAGC+CGG | 0.455339 | 8.1:+46544433 | None:intergenic |
| ATCACCGGCGGCATCGGCTC+AGG | 0.463289 | 8.1:+46544418 | None:intergenic |
| GGCGGCATCGGCTCAGGAGC+AGG | 0.463925 | 8.1:+46544424 | None:intergenic |
| TGCGGATTCACGGTTGCTGC+TGG | 0.464087 | 8.1:+46542065 | None:intergenic |
| GGTGGTGGAGCAATATAATC+AGG | 0.464702 | 8.1:+46543198 | None:intergenic |
| CCAACGGCTCAACAGGCATC+GGG | 0.464900 | 8.1:+46544464 | None:intergenic |
| GCTACAATCTGGGCAGCATA+GGG | 0.473645 | 8.1:-46542108 | MS.gene34660:CDS |
| AACATGTGAAATTTGTCATA+AGG | 0.477069 | 8.1:-46543449 | MS.gene34660:intron |
| CGAGCCGCTGTTGCAGCAGA+TGG | 0.477787 | 8.1:-46544332 | MS.gene34660:CDS |
| TCAGGATGTGGACGAGGTGG+TGG | 0.480833 | 8.1:+46543183 | None:intergenic |
| CCCGATGCCTGTTGAGCCGT+TGG | 0.483051 | 8.1:-46544464 | MS.gene34660:CDS |
| GAATGAATCACCGGCGGCAT+CGG | 0.484986 | 8.1:+46544412 | None:intergenic |
| ACAGGAGGCTGCAGCATTGG+CGG | 0.488662 | 8.1:-46542150 | MS.gene34660:intron |
| ATTGTAGCACGAAAGCAACT+TGG | 0.495200 | 8.1:+46542123 | None:intergenic |
| AATACAGGAGGCTGCAGCAT+TGG | 0.499752 | 8.1:-46542153 | MS.gene34660:intron |
| CTTGCGTGATCCTCGATTGT+TGG | 0.500268 | 8.1:-46542971 | MS.gene34660:CDS |
| GGCCGAGTGTAGGATTTGTC+AGG | 0.500318 | 8.1:-46544305 | MS.gene34660:CDS |
| AGGATTTGTCAGGAGGAGGA+TGG | 0.500614 | 8.1:-46544295 | MS.gene34660:CDS |
| TTCGGGTTCTTCTTCAGCGA+CGG | 0.501494 | 8.1:-46544377 | MS.gene34660:CDS |
| TTGCTTTCGTGCTACAATCT+GGG | 0.503156 | 8.1:-46542118 | MS.gene34660:CDS |
| TACCTTAAGACTTCCGCTAC+AGG | 0.504196 | 8.1:+46544246 | None:intergenic |
| GGATTTGTCAGGAGGAGGAT+GGG | 0.506006 | 8.1:-46544294 | MS.gene34660:CDS |
| ATGGTAGTTTCTTCAGGATG+TGG | 0.506061 | 8.1:+46543171 | None:intergenic |
| TGCTCCTGAGCCGATGCCGC+CGG | 0.506179 | 8.1:-46544422 | MS.gene34660:CDS |
| ACTTGTTCTTGGTGTGGGTG+CGG | 0.506923 | 8.1:+46542047 | None:intergenic |
| ATCTCCATCTGCTGCAACAG+CGG | 0.514025 | 8.1:+46544328 | None:intergenic |
| CCGGTGATTCATTCACCGGC+GGG | 0.516096 | 8.1:-46544403 | MS.gene34660:CDS |
| GAGGCACGCGCTTTCTGTCA+CGG | 0.518453 | 8.1:-46542641 | MS.gene34660:CDS |
| GCCAACGGCTCAACAGGCAT+CGG | 0.519010 | 8.1:+46544463 | None:intergenic |
| TTCTTCGAAGCTGAATATGA+TGG | 0.519355 | 8.1:-46542925 | MS.gene34660:CDS |
| AACTACACTTGTTCTTGGTG+TGG | 0.527387 | 8.1:+46542041 | None:intergenic |
| TTAATCTTACCCTATATCAA+TGG | 0.530350 | 8.1:+46543152 | None:intergenic |
| GCCGCCGGTGATTCATTCAC+CGG | 0.534985 | 8.1:-46544407 | MS.gene34660:CDS |
| AGCAATATAATCAGGTTCAT+AGG | 0.549152 | 8.1:+46543206 | None:intergenic |
| ATAGAAAGTGCGTCCAACGC+TGG | 0.549813 | 8.1:-46543492 | MS.gene34660:CDS |
| TGAGCCGTTGGCTCAACATC+CGG | 0.551280 | 8.1:-46544452 | MS.gene34660:CDS |
| TGCTACAATCTGGGCAGCAT+AGG | 0.553716 | 8.1:-46542109 | MS.gene34660:CDS |
| ACTACACTTGTTCTTGGTGT+GGG | 0.560807 | 8.1:+46542042 | None:intergenic |
| CTCCTGACAAATCCTACACT+CGG | 0.560833 | 8.1:+46544303 | None:intergenic |
| ACGGCAAAATGCAGCTCCGT+TGG | 0.561312 | 8.1:+46542885 | None:intergenic |
| GTTTCTTCAGGATGTGGACG+AGG | 0.562462 | 8.1:+46543177 | None:intergenic |
| GCTGTTGCAGCAGATGGAGA+TGG | 0.562855 | 8.1:-46544326 | MS.gene34660:CDS |
| GTGTAGGATTTGTCAGGAGG+AGG | 0.565300 | 8.1:-46544299 | MS.gene34660:CDS |
| AGACTTCCGCTACAGGCGCA+AGG | 0.568684 | 8.1:+46544253 | None:intergenic |
| TTGTAGCACGAAAGCAACTT+GGG | 0.569577 | 8.1:+46542124 | None:intergenic |
| CCCGCCGGTGAATGAATCAC+CGG | 0.578619 | 8.1:+46544403 | None:intergenic |
| GAAGAACCCGAAGGCCCCGC+CGG | 0.580599 | 8.1:+46544388 | None:intergenic |
| AGATGGAGATGGCCGAGTGT+AGG | 0.582153 | 8.1:-46544315 | MS.gene34660:CDS |
| TGAGCCGGATGTTGAGCCAA+CGG | 0.585772 | 8.1:+46544448 | None:intergenic |
| GCCGGTGATTCATTCACCGG+CGG | 0.593871 | 8.1:-46544404 | MS.gene34660:CDS |
| GAGAATCCTTGCGCCTGTAG+CGG | 0.594462 | 8.1:-46544259 | MS.gene34660:CDS |
| TCGATTGTTGGCAATTGCAG+AGG | 0.603328 | 8.1:-46542959 | MS.gene34660:CDS |
| TTACGATCAGAGCAGCTGAA+CGG | 0.606397 | 8.1:+46542866 | None:intergenic |
| CGCGTGCCTCAAGAGTAAAA+GGG | 0.611961 | 8.1:+46542654 | None:intergenic |
| CGAGGATCACGCAAGTCCAA+AGG | 0.614034 | 8.1:+46542979 | None:intergenic |
| TCTTCAGGATGTGGACGAGG+TGG | 0.627168 | 8.1:+46543180 | None:intergenic |
| GCGACGGATGATGACGATGT+CGG | 0.628741 | 8.1:-46544361 | MS.gene34660:CDS |
| GCCCAAGCCATGATATAGCA+AGG | 0.629507 | 8.1:+46542435 | None:intergenic |
| TCTGCAATTGCCAACAATCG+AGG | 0.633472 | 8.1:+46542961 | None:intergenic |
| TATGCTGCTTCTAATGCCAA+CGG | 0.637155 | 8.1:-46542901 | MS.gene34660:CDS |
| CGAGTGTAGGATTTGTCAGG+AGG | 0.640948 | 8.1:-46544302 | MS.gene34660:CDS |
| TGAATCAATGAGCGATCATG+TGG | 0.669095 | 8.1:-46544512 | None:intergenic |
| GCCGGTGAATGAATCACCGG+CGG | 0.674003 | 8.1:+46544406 | None:intergenic |
| GGATGATGACGATGTCGGCG+AGG | 0.685342 | 8.1:-46544356 | MS.gene34660:CDS |
| GCAAGGTAAAAGAAAGCCAG+CGG | 0.689230 | 8.1:+46542452 | None:intergenic |
| CTACAATCTGGGCAGCATAG+GGG | 0.695813 | 8.1:-46542107 | MS.gene34660:CDS |
| GTCGCTGAAGAAGAACCCGA+AGG | 0.704233 | 8.1:+46544379 | None:intergenic |
| CGGTGATTCATTCACCGGCG+GGG | 0.714860 | 8.1:-46544402 | MS.gene34660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACTTTATACAATTGAT+GGG | - | chr8.1:46544003-46544022 | MS.gene34660:intron | 15.0% |
| !! | ATACAAATAATCAGTTAAAA+AGG | + | chr8.1:46543725-46543744 | None:intergenic | 15.0% |
| !! | TATAAACTTTATACAATTGA+TGG | - | chr8.1:46544002-46544021 | MS.gene34660:intron | 15.0% |
| !!! | AAATAATAAATTTGCTTACA+AGG | - | chr8.1:46542654-46542673 | MS.gene34660:CDS | 15.0% |
| !! | AACTGATTATTTGTATAATC+CGG | - | chr8.1:46543729-46543748 | MS.gene34660:intron | 20.0% |
| !! | ATGTATATCATAACATTGTA+TGG | - | chr8.1:46543147-46543166 | MS.gene34660:intron | 20.0% |
| !!! | ATTCTTATCATTTCATGTTT+TGG | - | chr8.1:46544371-46544390 | MS.gene34660:CDS | 20.0% |
| !!! | TGTTACAAATTTCATGTTTT+AGG | - | chr8.1:46542348-46542367 | MS.gene34660:intron | 20.0% |
| ! | AACATGTGAAATTTGTCATA+AGG | - | chr8.1:46543099-46543118 | MS.gene34660:intron | 25.0% |
| ! | AAGAAACTACCATTGATATA+GGG | - | chr8.1:46543387-46543406 | MS.gene34660:intron | 25.0% |
| ! | AAGAATTAACATAGCAAAGT+GGG | - | chr8.1:46542778-46542797 | MS.gene34660:intron | 25.0% |
| ! | ATGTATAACCATAATTCTTG+AGG | + | chr8.1:46543446-46543465 | None:intergenic | 25.0% |
| ! | CATTTACAAAATTGTATGTC+TGG | + | chr8.1:46543770-46543789 | None:intergenic | 25.0% |
| ! | TAAGAATTAACATAGCAAAG+TGG | - | chr8.1:46542777-46542796 | MS.gene34660:intron | 25.0% |
| ! | TGAAATGATAAGAATACTGT+AGG | + | chr8.1:46544366-46544385 | None:intergenic | 25.0% |
| ! | TGTATAACCATAATTCTTGA+GGG | + | chr8.1:46543445-46543464 | None:intergenic | 25.0% |
| ! | TTAATCTTACCCTATATCAA+TGG | + | chr8.1:46543399-46543418 | None:intergenic | 25.0% |
| ! | TTATAAACTACATAGACAGA+AGG | + | chr8.1:46543987-46544006 | None:intergenic | 25.0% |
| ! | TTATGTAAGTGTCAAAAGAT+TGG | + | chr8.1:46542889-46542908 | None:intergenic | 25.0% |
| ! | TTTATTCTGTTATGCTTTGA+TGG | - | chr8.1:46542492-46542511 | MS.gene34660:intron | 25.0% |
| ! | TTTCATCACATAGATAATTG+CGG | - | chr8.1:46542746-46542765 | MS.gene34660:intron | 25.0% |
| ! | TTTCGTAAATAACAATGTCT+AGG | + | chr8.1:46544222-46544241 | None:intergenic | 25.0% |
| !! | CAATTTTGTAAATGAACTCT+AGG | - | chr8.1:46543776-46543795 | MS.gene34660:intron | 25.0% |
| !!! | ATTTCATGTTTTGGTAATAC+AGG | - | chr8.1:46544380-46544399 | MS.gene34660:CDS | 25.0% |
| !!! | CATTGTATGGTTTTGTTTAT+AGG | - | chr8.1:46543160-46543179 | MS.gene34660:intron | 25.0% |
| !!! | GTTAAACAATTTTAACGAAC+AGG | - | chr8.1:46542552-46542571 | MS.gene34660:intron | 25.0% |
| !!! | TACAAATTTCATGTTTTAGG+TGG | - | chr8.1:46542351-46542370 | MS.gene34660:intron | 25.0% |
| !!! | TTTTTTTATGAAATGATGCG+TGG | - | chr8.1:46542429-46542448 | MS.gene34660:CDS | 25.0% |
| ACCAGAACATAGAATGAATT+AGG | + | chr8.1:46543863-46543882 | None:intergenic | 30.0% | |
| AGCAATATAATCAGGTTCAT+AGG | + | chr8.1:46543345-46543364 | None:intergenic | 30.0% | |
| ATATCAATGGTAGTTTCTTC+AGG | + | chr8.1:46543386-46543405 | None:intergenic | 30.0% | |
| CATTGATGTTAGAGAGTTAT+TGG | - | chr8.1:46542577-46542596 | MS.gene34660:intron | 30.0% | |
| CTTACAGAGAAAAACATAGA+TGG | + | chr8.1:46543953-46543972 | None:intergenic | 30.0% | |
| GAAGAAACTACCATTGATAT+AGG | - | chr8.1:46543386-46543405 | MS.gene34660:intron | 30.0% | |
| ! | GGATATTGATTAGATGTGAT+TGG | - | chr8.1:46542799-46542818 | MS.gene34660:intron | 30.0% |
| ! | TTTGAAACTTCTGTACTCAT+TGG | - | chr8.1:46543499-46543518 | MS.gene34660:CDS | 30.0% |
| !! | TCTTTTACCTTGCTATATCA+TGG | - | chr8.1:46544106-46544125 | MS.gene34660:intron | 30.0% |
| !!! | GTATGGTTTTGTTTATAGGT+AGG | - | chr8.1:46543164-46543183 | MS.gene34660:CDS | 30.0% |
| AATTGTGAACATTCTTGCAG+TGG | - | chr8.1:46543524-46543543 | MS.gene34660:intron | 35.0% | |
| ACGTCTTTGATCTTAAGTGT+CGG | - | chr8.1:46544269-46544288 | MS.gene34660:CDS | 35.0% | |
| ATCAGTTAAAAAGGACTGCT+TGG | + | chr8.1:46543716-46543735 | None:intergenic | 35.0% | |
| CATATTCAGCTTCGAAGAAT+TGG | + | chr8.1:46543622-46543641 | None:intergenic | 35.0% | |
| GCCTAATTCATTCTATGTTC+TGG | - | chr8.1:46543859-46543878 | MS.gene34660:intron | 35.0% | |
| TAGTCTTCCCTCAAGAATTA+TGG | - | chr8.1:46543435-46543454 | MS.gene34660:intron | 35.0% | |
| TATCCAGCAGTTCGTAAATT+AGG | + | chr8.1:46543018-46543037 | None:intergenic | 35.0% | |
| TGCTTTCAAATATGTTGTCG+AGG | - | chr8.1:46544027-46544046 | MS.gene34660:intron | 35.0% | |
| TTAGGAGGACATAAATAGAG+AGG | + | chr8.1:46543000-46543019 | None:intergenic | 35.0% | |
| TTCTTCGAAGCTGAATATGA+TGG | - | chr8.1:46543623-46543642 | MS.gene34660:intron | 35.0% | |
| ! | ATATCTCTTGCTCCTTTTTC+CGG | - | chr8.1:46544314-46544333 | MS.gene34660:CDS | 35.0% |
| ! | CAATCAGTATTTTGCAACGA+CGG | - | chr8.1:46544135-46544154 | MS.gene34660:intron | 35.0% |
| ! | CATGCACATTGACTATGATA+GGG | - | chr8.1:46543804-46543823 | MS.gene34660:intron | 35.0% |
| ! | GCTTACAAGGTTTTCTTCAT+AGG | - | chr8.1:46542667-46542686 | MS.gene34660:intron | 35.0% |
| ! | GTCTAGGACATGAACAAATA+TGG | + | chr8.1:46544206-46544225 | None:intergenic | 35.0% |
| ! | TCATGCACATTGACTATGAT+AGG | - | chr8.1:46543803-46543822 | MS.gene34660:intron | 35.0% |
| !!! | TCATGTTTTGGTAATACAGG+AGG | - | chr8.1:46544383-46544402 | MS.gene34660:CDS | 35.0% |
| AGCAATCTGTTTCAAGCTGA+TGG | - | chr8.1:46543467-46543486 | MS.gene34660:CDS | 40.0% | |
| ATGGTAGTTTCTTCAGGATG+TGG | + | chr8.1:46543380-46543399 | None:intergenic | 40.0% | |
| ATTGTAGCACGAAAGCAACT+TGG | + | chr8.1:46544428-46544447 | None:intergenic | 40.0% | |
| CAAACACTCTCTTAGTAACC+AGG | - | chr8.1:46542945-46542964 | MS.gene34660:CDS | 40.0% | |
| CTATGTTCTGGTGCAGTTAA+TGG | - | chr8.1:46543871-46543890 | MS.gene34660:intron | 40.0% | |
| TATGAAATGATGCGTGGATG+TGG | - | chr8.1:46542435-46542454 | MS.gene34660:CDS | 40.0% | |
| TGTTGCATATTCCCGGAAAA+AGG | + | chr8.1:46544329-46544348 | None:intergenic | 40.0% | |
| TTGCTTTCGTGCTACAATCT+GGG | - | chr8.1:46544430-46544449 | MS.gene34660:CDS | 40.0% | |
| TTGTAGCACGAAAGCAACTT+GGG | + | chr8.1:46544427-46544446 | None:intergenic | 40.0% | |
| ! | ACCTTGCTATATCATGGCTT+GGG | - | chr8.1:46544112-46544131 | MS.gene34660:intron | 40.0% |
| ! | CAAGGTTTTCTTCATAGGCT+TGG | - | chr8.1:46542672-46542691 | MS.gene34660:intron | 40.0% |
| ! | CTCTATCTGTGTTTTGTGCA+AGG | + | chr8.1:46542854-46542873 | None:intergenic | 40.0% |
| ! | CTGCATTTGTTGCATATTCC+CGG | + | chr8.1:46544336-46544355 | None:intergenic | 40.0% |
| ! | TAATGGCCCTTTTACTCTTG+AGG | - | chr8.1:46543888-46543907 | MS.gene34660:intron | 40.0% |
| ! | TACCTTGCTATATCATGGCT+TGG | - | chr8.1:46544111-46544130 | MS.gene34660:intron | 40.0% |
| ! | TATCTCTTGCTCCTTTTTCC+GGG | - | chr8.1:46544315-46544334 | MS.gene34660:CDS | 40.0% |
| ! | TATGCTGCTTCTAATGCCAA+CGG | - | chr8.1:46543647-46543666 | MS.gene34660:intron | 40.0% |
| !! | AATTCACACAGAGAGTGCTT+TGG | + | chr8.1:46543260-46543279 | None:intergenic | 40.0% |
| AATGATGCGTGGATGTGGAA+AGG | - | chr8.1:46542440-46542459 | MS.gene34660:CDS | 45.0% | |
| ATGATGCGTGGATGTGGAAA+GGG | - | chr8.1:46542441-46542460 | MS.gene34660:CDS | 45.0% | |
| CACCAATGTCCCATACACAA+AGG | + | chr8.1:46542976-46542995 | None:intergenic | 45.0% | |
| CAGGCAATGCCTTTGTGTAT+GGG | - | chr8.1:46542964-46542983 | MS.gene34660:CDS | 45.0% | |
| CCAGCAGTTCGTAAATTAGG+AGG | + | chr8.1:46543015-46543034 | None:intergenic | 45.0% | |
| CCTCCTAATTTACGAACTGC+TGG | - | chr8.1:46543012-46543031 | MS.gene34660:intron | 45.0% | |
| CTCCTGACAAATCCTACACT+CGG | + | chr8.1:46542248-46542267 | None:intergenic | 45.0% | |
| GCAAGGTAAAAGAAAGCCAG+CGG | + | chr8.1:46544099-46544118 | None:intergenic | 45.0% | |
| GGGTGCTAACACTTTACACT+TGG | - | chr8.1:46543824-46543843 | MS.gene34660:intron | 45.0% | |
| TACCTTAAGACTTCCGCTAC+AGG | + | chr8.1:46542305-46542324 | None:intergenic | 45.0% | |
| TCGATTGTTGGCAATTGCAG+AGG | - | chr8.1:46543589-46543608 | MS.gene34660:intron | 45.0% | |
| TCTGCAATTGCCAACAATCG+AGG | + | chr8.1:46543590-46543609 | None:intergenic | 45.0% | |
| TGCCTTTGTGTATGGGACAT+TGG | - | chr8.1:46542971-46542990 | MS.gene34660:CDS | 45.0% | |
| TGTGAACATTCTTGCAGTGG+AGG | - | chr8.1:46543527-46543546 | MS.gene34660:intron | 45.0% | |
| TTACGATCAGAGCAGCTGAA+CGG | + | chr8.1:46543685-46543704 | None:intergenic | 45.0% | |
| ! | GGAGGATGGGATTGATAATC+TGG | - | chr8.1:46542267-46542286 | MS.gene34660:intron | 45.0% |
| ! | GTTGCTTTCGTGCTACAATC+TGG | - | chr8.1:46544429-46544448 | MS.gene34660:CDS | 45.0% |
| !! | CGATCATGTGGTGTTGTTTG+TGG | - | chr8.1:46542048-46542067 | MS.gene34660:CDS | 45.0% |
| !! | GGTGGTGGAGCAATATAATC+AGG | + | chr8.1:46543353-46543372 | None:intergenic | 45.0% |
| AACATTCTTGCAGTGGAGGC+TGG | - | chr8.1:46543531-46543550 | MS.gene34660:intron | 50.0% | |
| AATACAGGAGGCTGCAGCAT+TGG | - | chr8.1:46544395-46544414 | MS.gene34660:CDS | 50.0% | |
| AGGATTTGTCAGGAGGAGGA+TGG | - | chr8.1:46542253-46542272 | MS.gene34660:intron | 50.0% | |
| ATCTCCATCTGCTGCAACAG+CGG | + | chr8.1:46542223-46542242 | None:intergenic | 50.0% | |
| CAACGCTGGTGCAACGAAAA+AGG | - | chr8.1:46543070-46543089 | MS.gene34660:intron | 50.0% | |
| CCAGGCAATGCCTTTGTGTA+TGG | - | chr8.1:46542963-46542982 | MS.gene34660:CDS | 50.0% | |
| CGAGTGTAGGATTTGTCAGG+AGG | - | chr8.1:46542246-46542265 | MS.gene34660:intron | 50.0% | |
| CGCGTGCCTCAAGAGTAAAA+GGG | + | chr8.1:46543897-46543916 | None:intergenic | 50.0% | |
| CTACAATCTGGGCAGCATAG+GGG | - | chr8.1:46544441-46544460 | MS.gene34660:CDS | 50.0% | |
| CTGGTGCGCATATACATGAC+CGG | + | chr8.1:46543751-46543770 | None:intergenic | 50.0% | |
| CTTGCGTGATCCTCGATTGT+TGG | - | chr8.1:46543577-46543596 | MS.gene34660:intron | 50.0% | |
| GCCCAAGCCATGATATAGCA+AGG | + | chr8.1:46544116-46544135 | None:intergenic | 50.0% | |
| GCTACAATCTGGGCAGCATA+GGG | - | chr8.1:46544440-46544459 | MS.gene34660:CDS | 50.0% | |
| GGATTTGTCAGGAGGAGGAT+GGG | - | chr8.1:46542254-46542273 | MS.gene34660:intron | 50.0% | |
| GTGTAGGATTTGTCAGGAGG+AGG | - | chr8.1:46542249-46542268 | MS.gene34660:intron | 50.0% | |
| GTTTCTTCAGGATGTGGACG+AGG | + | chr8.1:46543374-46543393 | None:intergenic | 50.0% | |
| TGCTACAATCTGGGCAGCAT+AGG | - | chr8.1:46544439-46544458 | MS.gene34660:CDS | 50.0% | |
| ! | ACTTGTTCTTGGTGTGGGTG+CGG | + | chr8.1:46544504-46544523 | None:intergenic | 50.0% |
| ! | ATAGAAAGTGCGTCCAACGC+TGG | - | chr8.1:46543056-46543075 | MS.gene34660:intron | 50.0% |
| ! | TTCGGGTTCTTCTTCAGCGA+CGG | - | chr8.1:46542171-46542190 | MS.gene34660:intron | 50.0% |
| !! | CCATACACAAAGGCATTGCC+TGG | + | chr8.1:46542966-46542985 | None:intergenic | 50.0% |
| !! | CTTTTTCGTTGCACCAGCGT+TGG | + | chr8.1:46543072-46543091 | None:intergenic | 50.0% |
| ACGGCAAAATGCAGCTCCGT+TGG | + | chr8.1:46543666-46543685 | None:intergenic | 55.0% | |
| AGATGGAGATGGCCGAGTGT+AGG | - | chr8.1:46542233-46542252 | MS.gene34660:intron | 55.0% | |
| CGAGGATCACGCAAGTCCAA+AGG | + | chr8.1:46543572-46543591 | None:intergenic | 55.0% | |
| GAATGAATCACCGGCGGCAT+CGG | + | chr8.1:46542139-46542158 | None:intergenic | 55.0% | |
| GAGAATCCTTGCGCCTGTAG+CGG | - | chr8.1:46542289-46542308 | MS.gene34660:intron | 55.0% | |
| GCGCGTGCCTCAAGAGTAAA+AGG | + | chr8.1:46543898-46543917 | None:intergenic | 55.0% | |
| GCTGTTGCAGCAGATGGAGA+TGG | - | chr8.1:46542222-46542241 | MS.gene34660:intron | 55.0% | |
| GGCCGAGTGTAGGATTTGTC+AGG | - | chr8.1:46542243-46542262 | MS.gene34660:intron | 55.0% | |
| GTCGCTGAAGAAGAACCCGA+AGG | + | chr8.1:46542172-46542191 | None:intergenic | 55.0% | |
| TCTTCAGGATGTGGACGAGG+TGG | + | chr8.1:46543371-46543390 | None:intergenic | 55.0% | |
| TGAGCCGGATGTTGAGCCAA+CGG | + | chr8.1:46542103-46542122 | None:intergenic | 55.0% | |
| TGTTGAGCCAACGGCTCAAC+AGG | + | chr8.1:46542094-46542113 | None:intergenic | 55.0% | |
| TTGGTGTGGGTGCGGATTCA+CGG | + | chr8.1:46544496-46544515 | None:intergenic | 55.0% | |
| ! | CACGGTTGCTGCTGGTGTTA+TGG | + | chr8.1:46544478-46544497 | None:intergenic | 55.0% |
| ! | CGCCTGTAGCGGAAGTCTTA+AGG | - | chr8.1:46542300-46542319 | MS.gene34660:intron | 55.0% |
| ! | CTTTTCTTGCTTCGAGCCGC+TGG | - | chr8.1:46544080-46544099 | MS.gene34660:intron | 55.0% |
| ! | GCGACGGATGATGACGATGT+CGG | - | chr8.1:46542187-46542206 | MS.gene34660:intron | 55.0% |
| !! | TGAGCCGTTGGCTCAACATC+CGG | - | chr8.1:46542096-46542115 | MS.gene34660:CDS | 55.0% |
| AGACTTCCGCTACAGGCGCA+AGG | + | chr8.1:46542298-46542317 | None:intergenic | 60.0% | |
| AGTGGAGGCTGGACACTCTC+TGG | - | chr8.1:46543542-46543561 | MS.gene34660:intron | 60.0% | |
| CCAACGGCTCAACAGGCATC+GGG | + | chr8.1:46542087-46542106 | None:intergenic | 60.0% | |
| CCCGCCGGTGAATGAATCAC+CGG | + | chr8.1:46542148-46542167 | None:intergenic | 60.0% | |
| CCGGTGATTCATTCACCGGC+GGG | - | chr8.1:46542145-46542164 | MS.gene34660:CDS | 60.0% | |
| CGGTGATTCATTCACCGGCG+GGG | - | chr8.1:46542146-46542165 | MS.gene34660:CDS | 60.0% | |
| GACACTCTCTGGCACGCCTT+TGG | - | chr8.1:46543553-46543572 | MS.gene34660:intron | 60.0% | |
| GAGGCACGCGCTTTCTGTCA+CGG | - | chr8.1:46543907-46543926 | MS.gene34660:intron | 60.0% | |
| GCCAACGGCTCAACAGGCAT+CGG | + | chr8.1:46542088-46542107 | None:intergenic | 60.0% | |
| GCCGCCGGTGATTCATTCAC+CGG | - | chr8.1:46542141-46542160 | MS.gene34660:CDS | 60.0% | |
| GCCGGTGAATGAATCACCGG+CGG | + | chr8.1:46542145-46542164 | None:intergenic | 60.0% | |
| GCCGGTGATTCATTCACCGG+CGG | - | chr8.1:46542144-46542163 | MS.gene34660:CDS | 60.0% | |
| TCAGGATGTGGACGAGGTGG+TGG | + | chr8.1:46543368-46543387 | None:intergenic | 60.0% | |
| TGCGGATTCACGGTTGCTGC+TGG | + | chr8.1:46544486-46544505 | None:intergenic | 60.0% | |
| ! | ACAGGAGGCTGCAGCATTGG+CGG | - | chr8.1:46544398-46544417 | MS.gene34660:CDS | 60.0% |
| ! | GGATGATGACGATGTCGGCG+AGG | - | chr8.1:46542192-46542211 | MS.gene34660:intron | 60.0% |
| CCCGATGCCTGTTGAGCCGT+TGG | - | chr8.1:46542084-46542103 | MS.gene34660:CDS | 65.0% | |
| CGAGCCGCTGTTGCAGCAGA+TGG | - | chr8.1:46542216-46542235 | MS.gene34660:intron | 65.0% | |
| TCATTCACCGGCGGGGCCTT+CGG | - | chr8.1:46542153-46542172 | MS.gene34660:intron | 65.0% | |
| ! | GGCTCAGGAGCAGGTTGAGC+CGG | + | chr8.1:46542118-46542137 | None:intergenic | 65.0% |
| CATTCACCGGCGGGGCCTTC+GGG | - | chr8.1:46542154-46542173 | MS.gene34660:intron | 70.0% | |
| GAAGAACCCGAAGGCCCCGC+CGG | + | chr8.1:46542163-46542182 | None:intergenic | 70.0% | |
| TGCTCCTGAGCCGATGCCGC+CGG | - | chr8.1:46542126-46542145 | MS.gene34660:CDS | 70.0% | |
| !! | ATCACCGGCGGCATCGGCTC+AGG | + | chr8.1:46542133-46542152 | None:intergenic | 70.0% |
| !! | GGCGGCATCGGCTCAGGAGC+AGG | + | chr8.1:46542127-46542146 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 46542043 | 46544527 | 46542043 | ID=MS.gene34660 |
| chr8.1 | mRNA | 46542043 | 46544527 | 46542043 | ID=MS.gene34660.t1;Parent=MS.gene34660 |
| chr8.1 | exon | 46544249 | 46544527 | 46544249 | ID=MS.gene34660.t1.exon1;Parent=MS.gene34660.t1 |
| chr8.1 | CDS | 46544249 | 46544527 | 46544249 | ID=cds.MS.gene34660.t1;Parent=MS.gene34660.t1 |
| chr8.1 | exon | 46543450 | 46543521 | 46543450 | ID=MS.gene34660.t1.exon2;Parent=MS.gene34660.t1 |
| chr8.1 | CDS | 46543450 | 46543521 | 46543450 | ID=cds.MS.gene34660.t1;Parent=MS.gene34660.t1 |
| chr8.1 | exon | 46543162 | 46543229 | 46543162 | ID=MS.gene34660.t1.exon3;Parent=MS.gene34660.t1 |
| chr8.1 | CDS | 46543162 | 46543229 | 46543162 | ID=cds.MS.gene34660.t1;Parent=MS.gene34660.t1 |
| chr8.1 | exon | 46542870 | 46543026 | 46542870 | ID=MS.gene34660.t1.exon4;Parent=MS.gene34660.t1 |
| chr8.1 | CDS | 46542870 | 46543026 | 46542870 | ID=cds.MS.gene34660.t1;Parent=MS.gene34660.t1 |
| chr8.1 | exon | 46542603 | 46542683 | 46542603 | ID=MS.gene34660.t1.exon5;Parent=MS.gene34660.t1 |
| chr8.1 | CDS | 46542603 | 46542683 | 46542603 | ID=cds.MS.gene34660.t1;Parent=MS.gene34660.t1 |
| chr8.1 | exon | 46542401 | 46542490 | 46542401 | ID=MS.gene34660.t1.exon6;Parent=MS.gene34660.t1 |
| chr8.1 | CDS | 46542401 | 46542490 | 46542401 | ID=cds.MS.gene34660.t1;Parent=MS.gene34660.t1 |
| chr8.1 | exon | 46542043 | 46542168 | 46542043 | ID=MS.gene34660.t1.exon7;Parent=MS.gene34660.t1 |
| chr8.1 | CDS | 46542043 | 46542168 | 46542043 | ID=cds.MS.gene34660.t1;Parent=MS.gene34660.t1 |
| Gene Sequence |
| Protein sequence |
