Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36852.t1 | XP_013445694.1 | 92.1 | 290 | 18 | 3 | 1 | 290 | 1 | 285 | 3.50E-143 | 517.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36852.t1 | F4JKK0 | 35.4 | 96 | 50 | 3 | 40 | 132 | 47 | 133 | 3.1e-07 | 57.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36852.t1 | A0A072U1P4 | 92.1 | 290 | 18 | 3 | 1 | 290 | 1 | 285 | 2.5e-143 | 517.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36852 | MS.gene032904 | PPI |
| MS.gene36852 | MS.gene25499 | PPI |
| MS.gene36852 | MS.gene045950 | PPI |
| MS.gene36852 | MS.gene55219 | PPI |
| MS.gene36852 | MS.gene070573 | PPI |
| MS.gene36852 | MS.gene34660 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36852.t1 | MTR_8g467220 | 96.552 | 290 | 5 | 3 | 1 | 290 | 1 | 285 | 0.0 | 564 |
| MS.gene36852.t1 | MTR_5g040650 | 73.986 | 296 | 65 | 7 | 1 | 290 | 1 | 290 | 2.27e-125 | 359 |
| MS.gene36852.t1 | MTR_5g040650 | 74.510 | 255 | 54 | 6 | 1 | 249 | 1 | 250 | 8.60e-112 | 323 |
| MS.gene36852.t1 | MTR_1g108490 | 37.500 | 264 | 140 | 5 | 1 | 257 | 1 | 246 | 1.33e-57 | 186 |
| MS.gene36852.t1 | MTR_1g108490 | 38.095 | 231 | 117 | 5 | 1 | 226 | 1 | 210 | 7.79e-48 | 159 |
| MS.gene36852.t1 | MTR_7g109460 | 39.037 | 187 | 101 | 5 | 67 | 249 | 17 | 194 | 4.99e-39 | 136 |
| MS.gene36852.t1 | MTR_7g082950 | 35.897 | 195 | 111 | 7 | 68 | 258 | 14 | 198 | 9.32e-38 | 133 |
| MS.gene36852.t1 | MTR_7g082950 | 42.029 | 138 | 71 | 4 | 68 | 205 | 14 | 142 | 1.26e-33 | 120 |
| MS.gene36852.t1 | MTR_7g109460 | 39.490 | 157 | 83 | 4 | 67 | 220 | 17 | 164 | 2.84e-32 | 117 |
| MS.gene36852.t1 | MTR_1g087150 | 42.771 | 166 | 88 | 4 | 67 | 227 | 17 | 180 | 1.79e-31 | 117 |
| MS.gene36852.t1 | MTR_1g087150 | 42.771 | 166 | 88 | 4 | 67 | 227 | 17 | 180 | 6.56e-31 | 115 |
| MS.gene36852.t1 | MTR_7g010610 | 49.275 | 69 | 35 | 0 | 66 | 134 | 31 | 99 | 2.25e-18 | 80.9 |
| MS.gene36852.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 4.33e-11 | 63.5 |
| MS.gene36852.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 5.01e-11 | 63.2 |
| MS.gene36852.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 5.91e-11 | 62.8 |
| MS.gene36852.t1 | MTR_1g064710 | 39.286 | 84 | 43 | 3 | 39 | 120 | 235 | 312 | 7.03e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36852.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene36852.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene36852.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene36852.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene36852.t1 | AT2G02960 | 69.397 | 232 | 63 | 4 | 57 | 286 | 33 | 258 | 1.22e-99 | 293 |
| MS.gene36852.t1 | AT3G47550 | 54.392 | 296 | 113 | 7 | 1 | 285 | 1 | 285 | 4.11e-90 | 270 |
| MS.gene36852.t1 | AT3G47550 | 54.392 | 296 | 113 | 7 | 1 | 285 | 1 | 285 | 4.11e-90 | 270 |
| MS.gene36852.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.20e-86 | 259 |
| MS.gene36852.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.20e-86 | 259 |
| MS.gene36852.t1 | AT1G14260 | 59.701 | 268 | 89 | 5 | 4 | 269 | 5 | 255 | 2.20e-86 | 259 |
| MS.gene36852.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 81 | 314 | 2.43e-86 | 261 |
| MS.gene36852.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 68 | 301 | 2.74e-86 | 261 |
| MS.gene36852.t1 | AT5G62460 | 70.000 | 240 | 57 | 6 | 57 | 287 | 68 | 301 | 2.74e-86 | 261 |
| MS.gene36852.t1 | AT3G47550 | 54.582 | 251 | 94 | 6 | 1 | 242 | 1 | 240 | 1.65e-77 | 236 |
| MS.gene36852.t1 | AT2G02960 | 71.812 | 149 | 37 | 2 | 57 | 205 | 33 | 176 | 1.87e-64 | 204 |
| MS.gene36852.t1 | AT3G47550 | 50.218 | 229 | 94 | 6 | 1 | 220 | 1 | 218 | 3.13e-60 | 191 |
| MS.gene36852.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.70e-53 | 175 |
| MS.gene36852.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.70e-53 | 175 |
| MS.gene36852.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 1 | 225 | 1.70e-53 | 175 |
| MS.gene36852.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 27 | 251 | 1.88e-53 | 176 |
| MS.gene36852.t1 | AT2G01275 | 38.934 | 244 | 130 | 3 | 1 | 244 | 27 | 251 | 1.88e-53 | 176 |
| MS.gene36852.t1 | AT5G38070 | 36.255 | 251 | 137 | 5 | 1 | 251 | 1 | 228 | 4.52e-42 | 145 |
| MS.gene36852.t1 | AT4G02075 | 36.702 | 188 | 102 | 4 | 64 | 249 | 14 | 186 | 1.07e-33 | 122 |
| MS.gene36852.t1 | AT4G02075 | 36.702 | 188 | 102 | 4 | 64 | 249 | 14 | 186 | 1.43e-33 | 122 |
| MS.gene36852.t1 | AT1G02610 | 34.375 | 192 | 119 | 3 | 58 | 249 | 9 | 193 | 5.45e-32 | 117 |
| MS.gene36852.t1 | AT1G02610 | 34.375 | 192 | 119 | 3 | 58 | 249 | 9 | 193 | 5.67e-32 | 118 |
| MS.gene36852.t1 | AT4G02075 | 39.024 | 164 | 82 | 4 | 64 | 223 | 14 | 163 | 1.71e-26 | 102 |
| MS.gene36852.t1 | AT4G32670 | 38.462 | 91 | 49 | 3 | 45 | 132 | 12 | 98 | 1.58e-11 | 65.1 |
| MS.gene36852.t1 | AT4G32670 | 38.462 | 91 | 49 | 3 | 45 | 132 | 12 | 98 | 1.58e-11 | 65.1 |
Find 86 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCGTGCCTCAAGAGTAAA+AGG | 0.240504 | 8.4:+43405143 | None:intergenic |
| CATTCACCGGCGGGGCCTTC+GGG | 0.261603 | 8.4:-43406887 | MS.gene36852:CDS |
| TCATTCACCGGCGGGGCCTT+CGG | 0.272228 | 8.4:-43406888 | MS.gene36852:CDS |
| ATACAAACTACACTTGTTCT+TGG | 0.295160 | 8.4:+43404526 | None:intergenic |
| CAACGCTGGTGCAACGAAAA+AGG | 0.305135 | 8.4:-43405968 | MS.gene36852:CDS |
| CATATTCAGCTTCGAAGAAT+TGG | 0.316433 | 8.4:+43405419 | None:intergenic |
| GAAGAAACTACCATAGATAT+AGG | 0.327532 | 8.4:-43405652 | MS.gene36852:CDS |
| ATATCTATGGTAGTTTCTTC+AGG | 0.329248 | 8.4:+43405655 | None:intergenic |
| GTTGCTTTCGTGCTACAATC+TGG | 0.341099 | 8.4:-43404609 | MS.gene36852:CDS |
| GACACTCTCTGGCACGCCTT+TGG | 0.362869 | 8.4:-43405485 | MS.gene36852:CDS |
| ATCACCGGCGGCATCGGTTC+AGG | 0.365743 | 8.4:+43406911 | None:intergenic |
| AGAGGATGGTATTGATAATC+TGG | 0.367367 | 8.4:-43406774 | MS.gene36852:CDS |
| CACGGTTGCTGCTGGTGTTA+TGG | 0.367886 | 8.4:+43404563 | None:intergenic |
| TACCTTGCTATATCATGGCT+TGG | 0.375698 | 8.4:-43404927 | MS.gene36852:CDS |
| CGCCTGTAGCGGAAGTCTTA+AGG | 0.384567 | 8.4:-43406741 | MS.gene36852:intron |
| TTAATCTTACCCTATATCTA+TGG | 0.389900 | 8.4:+43405642 | None:intergenic |
| TGTTGAGCCAACGGCTCAAC+CGG | 0.390160 | 8.4:+43406950 | None:intergenic |
| AACATTCTTGCAGCGGAGGC+TGG | 0.408803 | 8.4:-43405507 | MS.gene36852:intron |
| ACCTTGCTATATCATGGCTT+GGG | 0.419793 | 8.4:-43404926 | MS.gene36852:CDS |
| AGCGGAGGCTGGACACTCTC+TGG | 0.428867 | 8.4:-43405496 | MS.gene36852:CDS |
| AAGAAACTACCATAGATATA+GGG | 0.430184 | 8.4:-43405651 | MS.gene36852:intron |
| TTGGTGTGGGTGCGGATTCA+CGG | 0.440637 | 8.4:+43404545 | None:intergenic |
| CGATCATGTGGTGTTGTTTG+TGG | 0.440955 | 8.4:-43406993 | MS.gene36852:CDS |
| TCGATTAATGCGACCGATGC+CGG | 0.461813 | 8.4:-43406969 | MS.gene36852:CDS |
| TGCGGATTCACGGTTGCTGC+TGG | 0.464087 | 8.4:+43404555 | None:intergenic |
| GGCGGCATCGGTTCAGGAGC+AGG | 0.464476 | 8.4:+43406917 | None:intergenic |
| GGTGGTGGAGCAATATAATC+AGG | 0.464702 | 8.4:+43405688 | None:intergenic |
| GGTTCAGGAGCAGGCTGAGC+CGG | 0.472619 | 8.4:+43406926 | None:intergenic |
| GCTACAATCTGGGCAGCATA+GGG | 0.473645 | 8.4:-43404598 | MS.gene36852:CDS |
| ACCGATGCCGGTTGAGCCGT+TGG | 0.474368 | 8.4:-43406957 | MS.gene36852:CDS |
| AACATGTGAAATTTGTCATA+AGG | 0.477069 | 8.4:-43405939 | MS.gene36852:intron |
| CGAGCCGCTGTTGCAGCAGA+TGG | 0.477787 | 8.4:-43406825 | MS.gene36852:CDS |
| TGAGCCGTTGGCTCAACATC+CGG | 0.480048 | 8.4:-43406945 | MS.gene36852:CDS |
| TCAGGATGTGGACGAGGTGG+TGG | 0.480833 | 8.4:+43405673 | None:intergenic |
| ACAGGAGGCTGCAGCATTGG+CGG | 0.488662 | 8.4:-43404640 | MS.gene36852:intron |
| GGCTGAGTGTAGGATTTGTC+AGG | 0.492601 | 8.4:-43406798 | MS.gene36852:CDS |
| ATGGTAGTTTCTTCAGGATG+TGG | 0.493224 | 8.4:+43405661 | None:intergenic |
| ATTGTAGCACGAAAGCAACT+TGG | 0.495200 | 8.4:+43404613 | None:intergenic |
| AATACAGGAGGCTGCAGCAT+TGG | 0.499752 | 8.4:-43404643 | MS.gene36852:intron |
| CTTGCGTGATCCTCGATTGT+TGG | 0.500268 | 8.4:-43405461 | MS.gene36852:CDS |
| TTCGGGTTCTTCTTCAGCGA+CGG | 0.501494 | 8.4:-43406870 | MS.gene36852:CDS |
| TTGCTTTCGTGCTACAATCT+GGG | 0.503156 | 8.4:-43404608 | MS.gene36852:CDS |
| TACCTTAAGACTTCCGCTAC+AGG | 0.504196 | 8.4:+43406739 | None:intergenic |
| GTGTAGGATTTGTCAGGAAG+AGG | 0.506436 | 8.4:-43406792 | MS.gene36852:CDS |
| ACTTGTTCTTGGTGTGGGTG+CGG | 0.506923 | 8.4:+43404537 | None:intergenic |
| GAATGAATCACCGGCGGCAT+CGG | 0.507695 | 8.4:+43406905 | None:intergenic |
| CCGGTGATTCATTCACCGGC+GGG | 0.516096 | 8.4:-43406896 | MS.gene36852:CDS |
| GAGGCACGCGCTTTCTGTCA+CGG | 0.518453 | 8.4:-43405131 | MS.gene36852:CDS |
| TTCTTCGAAGCTGAATATGA+TGG | 0.519355 | 8.4:-43405415 | MS.gene36852:CDS |
| ATCTCCATCTGCTGCAACAG+CGG | 0.524481 | 8.4:+43406821 | None:intergenic |
| AACTACACTTGTTCTTGGTG+TGG | 0.527387 | 8.4:+43404531 | None:intergenic |
| TGCTCCTGAACCGATGCCGC+CGG | 0.532957 | 8.4:-43406915 | MS.gene36852:CDS |
| GCCGCCGGTGATTCATTCAC+CGG | 0.534985 | 8.4:-43406900 | MS.gene36852:CDS |
| AGCAATATAATCAGGTTCAT+AGG | 0.549152 | 8.4:+43405696 | None:intergenic |
| AGGATTTGTCAGGAAGAGGA+TGG | 0.552462 | 8.4:-43406788 | MS.gene36852:CDS |
| TGCTACAATCTGGGCAGCAT+AGG | 0.553716 | 8.4:-43404599 | MS.gene36852:CDS |
| ACTACACTTGTTCTTGGTGT+GGG | 0.560807 | 8.4:+43404532 | None:intergenic |
| ACGGCAAAATGCAGCTCCGT+TGG | 0.561312 | 8.4:+43405375 | None:intergenic |
| GCCAACGGCTCAACCGGCAT+CGG | 0.561647 | 8.4:+43406956 | None:intergenic |
| GTTTCTTCAGGATGTGGACG+AGG | 0.562462 | 8.4:+43405667 | None:intergenic |
| AGACTTCCGCTACAGGCGCA+AGG | 0.568684 | 8.4:+43406746 | None:intergenic |
| TTGTAGCACGAAAGCAACTT+GGG | 0.569577 | 8.4:+43404614 | None:intergenic |
| CCCGCCGGTGAATGAATCAC+CGG | 0.578619 | 8.4:+43406896 | None:intergenic |
| GAAGAACCCGAAGGCCCCGC+CGG | 0.580599 | 8.4:+43406881 | None:intergenic |
| ATAGAAAGTGCGTCCAACGC+TGG | 0.584558 | 8.4:-43405982 | MS.gene36852:CDS |
| TGAGCCGGATGTTGAGCCAA+CGG | 0.587025 | 8.4:+43406941 | None:intergenic |
| GCTGTTGCAGCAGATGGAGA+TGG | 0.590554 | 8.4:-43406819 | MS.gene36852:CDS |
| GCCGGTGATTCATTCACCGG+CGG | 0.593871 | 8.4:-43406897 | MS.gene36852:CDS |
| GAGAATCCTTGCGCCTGTAG+CGG | 0.594462 | 8.4:-43406752 | MS.gene36852:CDS |
| AGATGGAGATGGCTGAGTGT+AGG | 0.601452 | 8.4:-43406808 | MS.gene36852:CDS |
| TCGATTGTTGGCAATTGCAG+AGG | 0.603328 | 8.4:-43405449 | MS.gene36852:CDS |
| TTACGATCAGAGCAGCTGAA+CGG | 0.606397 | 8.4:+43405356 | None:intergenic |
| CGCGTGCCTCAAGAGTAAAA+GGG | 0.611961 | 8.4:+43405144 | None:intergenic |
| CGAGGATCACGCAAGTCCAA+AGG | 0.614034 | 8.4:+43405469 | None:intergenic |
| TCTTCAGGATGTGGACGAGG+TGG | 0.627168 | 8.4:+43405670 | None:intergenic |
| GCGACGGATGATGACGATGT+CGG | 0.628741 | 8.4:-43406854 | MS.gene36852:CDS |
| GCCCAAGCCATGATATAGCA+AGG | 0.629507 | 8.4:+43404925 | None:intergenic |
| TCTGCAATTGCCAACAATCG+AGG | 0.633472 | 8.4:+43405451 | None:intergenic |
| TATGCTGCTTCTAATGCCAA+CGG | 0.637155 | 8.4:-43405391 | MS.gene36852:CDS |
| TGAATCAATGAGCGATCATG+TGG | 0.669095 | 8.4:-43407005 | None:intergenic |
| GCCGGTGAATGAATCACCGG+CGG | 0.674003 | 8.4:+43406899 | None:intergenic |
| GGATGATGACGATGTCGGCG+AGG | 0.685342 | 8.4:-43406849 | MS.gene36852:CDS |
| GCAAGGTAAAAGAAAGCCAG+CGG | 0.689230 | 8.4:+43404942 | None:intergenic |
| CTACAATCTGGGCAGCATAG+GGG | 0.695813 | 8.4:-43404597 | MS.gene36852:CDS |
| GTCGCTGAAGAAGAACCCGA+AGG | 0.704233 | 8.4:+43406872 | None:intergenic |
| CGGTGATTCATTCACCGGCG+GGG | 0.714860 | 8.4:-43406895 | MS.gene36852:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACTTTATACAATTGAT+GGG | - | chr8.4:43406496-43406515 | MS.gene36852:intron | 15.0% |
| !! | ATACAAATAATCAGTTAAAA+AGG | + | chr8.4:43406218-43406237 | None:intergenic | 15.0% |
| !! | TATAAACTTTATACAATTGA+TGG | - | chr8.4:43406495-43406514 | MS.gene36852:intron | 15.0% |
| !!! | TAATAATAAATTTGCTTACA+AGG | - | chr8.4:43405137-43405156 | MS.gene36852:CDS | 15.0% |
| !! | AACTGATTATTTGTATAATC+CGG | - | chr8.4:43406222-43406241 | MS.gene36852:intron | 20.0% |
| !! | AGATAATACATAGATAATTG+CGG | - | chr8.4:43405240-43405259 | MS.gene36852:intron | 20.0% |
| !! | ATGTATATCATAACATTGTA+TGG | - | chr8.4:43405640-43405659 | MS.gene36852:intron | 20.0% |
| !!! | ATTCTTATCATTTCATGTTT+TGG | - | chr8.4:43406864-43406883 | MS.gene36852:CDS | 20.0% |
| !!! | TGTTACAAATTTCATGTTTT+AGG | - | chr8.4:43404838-43404857 | MS.gene36852:intron | 20.0% |
| ! | AAATTAGGACATAAATAGAG+AGG | + | chr8.4:43405496-43405515 | None:intergenic | 25.0% |
| ! | AACATGTGAAATTTGTCATA+AGG | - | chr8.4:43405592-43405611 | MS.gene36852:intron | 25.0% |
| ! | AAGAAACTACCATAGATATA+GGG | - | chr8.4:43405880-43405899 | MS.gene36852:intron | 25.0% |
| ! | AAGAATTAACATAGCAAAGT+GGG | - | chr8.4:43405272-43405291 | MS.gene36852:intron | 25.0% |
| ! | ATGTATAACCATAATTCTTG+AGG | + | chr8.4:43405939-43405958 | None:intergenic | 25.0% |
| ! | CATTTACAAAATTGTATGTC+TGG | + | chr8.4:43406263-43406282 | None:intergenic | 25.0% |
| ! | TAAGAATTAACATAGCAAAG+TGG | - | chr8.4:43405271-43405290 | MS.gene36852:intron | 25.0% |
| ! | TGAAATGATAAGAATACTGT+AGG | + | chr8.4:43406859-43406878 | None:intergenic | 25.0% |
| ! | TGTATAACCATAATTCTTGA+GGG | + | chr8.4:43405938-43405957 | None:intergenic | 25.0% |
| ! | TTAATCTTACCCTATATCTA+TGG | + | chr8.4:43405892-43405911 | None:intergenic | 25.0% |
| ! | TTATAAACTACATAGACAGA+AGG | + | chr8.4:43406480-43406499 | None:intergenic | 25.0% |
| ! | TTATGTAAGTGTCAAAAGAT+TGG | + | chr8.4:43405383-43405402 | None:intergenic | 25.0% |
| ! | TTTATTCTGTTATGCTTTGA+TGG | - | chr8.4:43404976-43404995 | MS.gene36852:intron | 25.0% |
| ! | TTTCGTAAATAACAATGTCT+AGG | + | chr8.4:43406715-43406734 | None:intergenic | 25.0% |
| !! | CAATTTTGTAAATGAACTCT+AGG | - | chr8.4:43406269-43406288 | MS.gene36852:intron | 25.0% |
| !!! | ATTTCATGTTTTGGTAATAC+AGG | - | chr8.4:43406873-43406892 | MS.gene36852:CDS | 25.0% |
| !!! | CATTGTATGGTTTTGTTTAT+AGG | - | chr8.4:43405653-43405672 | MS.gene36852:CDS | 25.0% |
| !!! | GTTAAACAATTTTAACGAAC+AGG | - | chr8.4:43405036-43405055 | MS.gene36852:intron | 25.0% |
| !!! | TACAAATTTCATGTTTTAGG+TGG | - | chr8.4:43404841-43404860 | MS.gene36852:intron | 25.0% |
| !!! | TGTTTTTATGAAATGATGCA+TGG | - | chr8.4:43404913-43404932 | MS.gene36852:CDS | 25.0% |
| ACCAGAACATAGAATGAATT+AGG | + | chr8.4:43406356-43406375 | None:intergenic | 30.0% | |
| AGCAATATAATCAGGTTCAT+AGG | + | chr8.4:43405838-43405857 | None:intergenic | 30.0% | |
| ATATCTATGGTAGTTTCTTC+AGG | + | chr8.4:43405879-43405898 | None:intergenic | 30.0% | |
| CTTACAGAGAAAAACATAGA+TGG | + | chr8.4:43406446-43406465 | None:intergenic | 30.0% | |
| GAAGAAACTACCATAGATAT+AGG | - | chr8.4:43405879-43405898 | MS.gene36852:intron | 30.0% | |
| TTAAATCCTTGCACAAAACA+CGG | - | chr8.4:43405339-43405358 | MS.gene36852:intron | 30.0% | |
| ! | GGATATTGATTAGATGTGAT+TGG | - | chr8.4:43405293-43405312 | MS.gene36852:intron | 30.0% |
| !! | TCTTTTACCTTGCTATATCA+TGG | - | chr8.4:43406599-43406618 | MS.gene36852:intron | 30.0% |
| !!! | GTATGGTTTTGTTTATAGGT+AGG | - | chr8.4:43405657-43405676 | MS.gene36852:CDS | 30.0% |
| AATTGTGAACATTCTTGCAG+CGG | - | chr8.4:43406017-43406036 | MS.gene36852:intron | 35.0% | |
| ATCAGTTAAAAAGGACTGCT+TGG | + | chr8.4:43406209-43406228 | None:intergenic | 35.0% | |
| CATATTCAGCTTCGAAGAAT+TGG | + | chr8.4:43406115-43406134 | None:intergenic | 35.0% | |
| CATTGATGTTAGAGAGCTAT+TGG | - | chr8.4:43405061-43405080 | MS.gene36852:intron | 35.0% | |
| GCCTAATTCATTCTATGTTC+TGG | - | chr8.4:43406352-43406371 | MS.gene36852:intron | 35.0% | |
| TAGTCTTCCCTCAAGAATTA+TGG | - | chr8.4:43405928-43405947 | MS.gene36852:intron | 35.0% | |
| TATCCAGCAGTTCGTAAATT+AGG | + | chr8.4:43405511-43405530 | None:intergenic | 35.0% | |
| TATGAAATGATGCATGGATG+TGG | - | chr8.4:43404919-43404938 | MS.gene36852:CDS | 35.0% | |
| TGCTTTCAAATATGTTGTCG+AGG | - | chr8.4:43406520-43406539 | MS.gene36852:intron | 35.0% | |
| TTCTTCGAAGCTGAATATGA+TGG | - | chr8.4:43406116-43406135 | MS.gene36852:intron | 35.0% | |
| ! | ATATCTCTTGCTCCTTTTTC+CGG | - | chr8.4:43406807-43406826 | MS.gene36852:CDS | 35.0% |
| ! | CAATCAGTATTTTGCAACGA+CGG | - | chr8.4:43406628-43406647 | MS.gene36852:intron | 35.0% |
| ! | CATGCACATTGACTATGATA+GGG | - | chr8.4:43406297-43406316 | MS.gene36852:intron | 35.0% |
| ! | GCTTACAAGGTTTTCTTCAT+AGG | - | chr8.4:43405150-43405169 | MS.gene36852:CDS | 35.0% |
| ! | GGAACAATGCTTTTGTGTAT+GGG | - | chr8.4:43405460-43405479 | MS.gene36852:CDS | 35.0% |
| ! | GTCTAGGACATGAACAAATA+TGG | + | chr8.4:43406699-43406718 | None:intergenic | 35.0% |
| ! | TCATGCACATTGACTATGAT+AGG | - | chr8.4:43406296-43406315 | MS.gene36852:intron | 35.0% |
| !! | AGAGGATGGTATTGATAATC+TGG | - | chr8.4:43404757-43404776 | MS.gene36852:intron | 35.0% |
| !! | ATACACAAAAGCATTGTTCC+CGG | + | chr8.4:43405460-43405479 | None:intergenic | 35.0% |
| !!! | TCATGTTTTGGTAATACAGG+AGG | - | chr8.4:43406876-43406895 | MS.gene36852:CDS | 35.0% |
| AATGATGCATGGATGTGGAA+AGG | - | chr8.4:43404924-43404943 | MS.gene36852:CDS | 40.0% | |
| AGCAATCTGTTTCAAGCTGA+TGG | - | chr8.4:43405960-43405979 | MS.gene36852:CDS | 40.0% | |
| ATGATGCATGGATGTGGAAA+GGG | - | chr8.4:43404925-43404944 | MS.gene36852:CDS | 40.0% | |
| ATGGTAGTTTCTTCAGGATG+TGG | + | chr8.4:43405873-43405892 | None:intergenic | 40.0% | |
| ATTGTAGCACGAAAGCAACT+TGG | + | chr8.4:43406921-43406940 | None:intergenic | 40.0% | |
| CTATGTTCTGGTGCAGTTAA+TGG | - | chr8.4:43406364-43406383 | MS.gene36852:intron | 40.0% | |
| TCAAACACGCTCTTAGTAAC+CGG | - | chr8.4:43405438-43405457 | MS.gene36852:CDS | 40.0% | |
| TGTCCTAATTTACGAACTGC+TGG | - | chr8.4:43405505-43405524 | MS.gene36852:intron | 40.0% | |
| TGTTGCATATTCCCGGAAAA+AGG | + | chr8.4:43406822-43406841 | None:intergenic | 40.0% | |
| TTGCTTTCGTGCTACAATCT+GGG | - | chr8.4:43406923-43406942 | MS.gene36852:CDS | 40.0% | |
| TTGTAGCACGAAAGCAACTT+GGG | + | chr8.4:43406920-43406939 | None:intergenic | 40.0% | |
| ! | ACCTTGCTATATCATGGCTT+GGG | - | chr8.4:43406605-43406624 | MS.gene36852:intron | 40.0% |
| ! | CAAGGTTTTCTTCATAGGCT+TGG | - | chr8.4:43405155-43405174 | MS.gene36852:intron | 40.0% |
| ! | CTGCATTTGTTGCATATTCC+CGG | + | chr8.4:43406829-43406848 | None:intergenic | 40.0% |
| ! | GGGAACAATGCTTTTGTGTA+TGG | - | chr8.4:43405459-43405478 | MS.gene36852:CDS | 40.0% |
| ! | TAATGGCCCTTTTACTCTTG+AGG | - | chr8.4:43406381-43406400 | MS.gene36852:intron | 40.0% |
| ! | TACCTTGCTATATCATGGCT+TGG | - | chr8.4:43406604-43406623 | MS.gene36852:intron | 40.0% |
| ! | TATCTCTTGCTCCTTTTTCC+GGG | - | chr8.4:43406808-43406827 | MS.gene36852:CDS | 40.0% |
| ! | TATGCTGCTTCTAATGCCAA+CGG | - | chr8.4:43406140-43406159 | MS.gene36852:intron | 40.0% |
| ! | TGCTTTTGTGTATGGGACAT+TGG | - | chr8.4:43405467-43405486 | MS.gene36852:CDS | 40.0% |
| !! | AATTCACACAGAGAGTGCTT+TGG | + | chr8.4:43405753-43405772 | None:intergenic | 40.0% |
| AGGATTTGTCAGGAAGAGGA+TGG | - | chr8.4:43404743-43404762 | MS.gene36852:intron | 45.0% | |
| CAAACACGCTCTTAGTAACC+GGG | - | chr8.4:43405439-43405458 | MS.gene36852:CDS | 45.0% | |
| GCAAGGTAAAAGAAAGCCAG+CGG | + | chr8.4:43406592-43406611 | None:intergenic | 45.0% | |
| GGGTGCTAACACTTTACACT+TGG | - | chr8.4:43406317-43406336 | MS.gene36852:intron | 45.0% | |
| GTGTAGGATTTGTCAGGAAG+AGG | - | chr8.4:43404739-43404758 | MS.gene36852:intron | 45.0% | |
| TACCTTAAGACTTCCGCTAC+AGG | + | chr8.4:43404795-43404814 | None:intergenic | 45.0% | |
| TCGATTGTTGGCAATTGCAG+AGG | - | chr8.4:43406082-43406101 | MS.gene36852:intron | 45.0% | |
| TCTGCAATTGCCAACAATCG+AGG | + | chr8.4:43406083-43406102 | None:intergenic | 45.0% | |
| TTACGATCAGAGCAGCTGAA+CGG | + | chr8.4:43406178-43406197 | None:intergenic | 45.0% | |
| ! | CTCTATCCGTGTTTTGTGCA+AGG | + | chr8.4:43405348-43405367 | None:intergenic | 45.0% |
| ! | GTTGCTTTCGTGCTACAATC+TGG | - | chr8.4:43406922-43406941 | MS.gene36852:CDS | 45.0% |
| !! | CGATCATGTGGTGTTGTTTG+TGG | - | chr8.4:43404538-43404557 | MS.gene36852:CDS | 45.0% |
| !! | GGTGGTGGAGCAATATAATC+AGG | + | chr8.4:43405846-43405865 | None:intergenic | 45.0% |
| AATACAGGAGGCTGCAGCAT+TGG | - | chr8.4:43406888-43406907 | MS.gene36852:CDS | 50.0% | |
| AGATGGAGATGGCTGAGTGT+AGG | - | chr8.4:43404723-43404742 | MS.gene36852:intron | 50.0% | |
| ATCTCCATCTGCTGCAACAG+CGG | + | chr8.4:43404713-43404732 | None:intergenic | 50.0% | |
| CAACGCTGGTGCAACGAAAA+AGG | - | chr8.4:43405563-43405582 | MS.gene36852:intron | 50.0% | |
| CGCGTGCCTCAAGAGTAAAA+GGG | + | chr8.4:43406390-43406409 | None:intergenic | 50.0% | |
| CTACAATCTGGGCAGCATAG+GGG | - | chr8.4:43406934-43406953 | MS.gene36852:CDS | 50.0% | |
| CTGGTGCGCATATACATGAC+CGG | + | chr8.4:43406244-43406263 | None:intergenic | 50.0% | |
| CTTGCGTGATCCTCGATTGT+TGG | - | chr8.4:43406070-43406089 | MS.gene36852:intron | 50.0% | |
| GCCCAAGCCATGATATAGCA+AGG | + | chr8.4:43406609-43406628 | None:intergenic | 50.0% | |
| GCTACAATCTGGGCAGCATA+GGG | - | chr8.4:43406933-43406952 | MS.gene36852:CDS | 50.0% | |
| GGCTGAGTGTAGGATTTGTC+AGG | - | chr8.4:43404733-43404752 | MS.gene36852:intron | 50.0% | |
| GTTTCTTCAGGATGTGGACG+AGG | + | chr8.4:43405867-43405886 | None:intergenic | 50.0% | |
| TCGATTAATGCGACCGATGC+CGG | - | chr8.4:43404562-43404581 | MS.gene36852:CDS | 50.0% | |
| TGCTACAATCTGGGCAGCAT+AGG | - | chr8.4:43406932-43406951 | MS.gene36852:CDS | 50.0% | |
| TGTGAACATTCTTGCAGCGG+AGG | - | chr8.4:43406020-43406039 | MS.gene36852:intron | 50.0% | |
| ! | ACTTGTTCTTGGTGTGGGTG+CGG | + | chr8.4:43406997-43407016 | None:intergenic | 50.0% |
| ! | ATAGAAAGTGCGTCCAACGC+TGG | - | chr8.4:43405549-43405568 | MS.gene36852:intron | 50.0% |
| ! | TTCGGGTTCTTCTTCAGCGA+CGG | - | chr8.4:43404661-43404680 | MS.gene36852:intron | 50.0% |
| !! | CTTTTTCGTTGCACCAGCGT+TGG | + | chr8.4:43405565-43405584 | None:intergenic | 50.0% |
| AACATTCTTGCAGCGGAGGC+TGG | - | chr8.4:43406024-43406043 | MS.gene36852:intron | 55.0% | |
| ACGGCAAAATGCAGCTCCGT+TGG | + | chr8.4:43406159-43406178 | None:intergenic | 55.0% | |
| CGAGGATCACGCAAGTCCAA+AGG | + | chr8.4:43406065-43406084 | None:intergenic | 55.0% | |
| GAATGAATCACCGGCGGCAT+CGG | + | chr8.4:43404629-43404648 | None:intergenic | 55.0% | |
| GAGAATCCTTGCGCCTGTAG+CGG | - | chr8.4:43404779-43404798 | MS.gene36852:intron | 55.0% | |
| GCGCGTGCCTCAAGAGTAAA+AGG | + | chr8.4:43406391-43406410 | None:intergenic | 55.0% | |
| GCTGTTGCAGCAGATGGAGA+TGG | - | chr8.4:43404712-43404731 | MS.gene36852:intron | 55.0% | |
| GTCGCTGAAGAAGAACCCGA+AGG | + | chr8.4:43404662-43404681 | None:intergenic | 55.0% | |
| TCTTCAGGATGTGGACGAGG+TGG | + | chr8.4:43405864-43405883 | None:intergenic | 55.0% | |
| TGAGCCGGATGTTGAGCCAA+CGG | + | chr8.4:43404593-43404612 | None:intergenic | 55.0% | |
| TGTTGAGCCAACGGCTCAAC+CGG | + | chr8.4:43404584-43404603 | None:intergenic | 55.0% | |
| TTGGTGTGGGTGCGGATTCA+CGG | + | chr8.4:43406989-43407008 | None:intergenic | 55.0% | |
| ! | CACGGTTGCTGCTGGTGTTA+TGG | + | chr8.4:43406971-43406990 | None:intergenic | 55.0% |
| ! | CGCCTGTAGCGGAAGTCTTA+AGG | - | chr8.4:43404790-43404809 | MS.gene36852:intron | 55.0% |
| ! | CTTTTCTTGCTTCGAGCCGC+TGG | - | chr8.4:43406573-43406592 | MS.gene36852:intron | 55.0% |
| ! | GCGACGGATGATGACGATGT+CGG | - | chr8.4:43404677-43404696 | MS.gene36852:intron | 55.0% |
| !! | TGAGCCGTTGGCTCAACATC+CGG | - | chr8.4:43404586-43404605 | MS.gene36852:CDS | 55.0% |
| AGACTTCCGCTACAGGCGCA+AGG | + | chr8.4:43404788-43404807 | None:intergenic | 60.0% | |
| CCCGCCGGTGAATGAATCAC+CGG | + | chr8.4:43404638-43404657 | None:intergenic | 60.0% | |
| CCGGTGATTCATTCACCGGC+GGG | - | chr8.4:43404635-43404654 | MS.gene36852:CDS | 60.0% | |
| CGGTGATTCATTCACCGGCG+GGG | - | chr8.4:43404636-43404655 | MS.gene36852:CDS | 60.0% | |
| GACACTCTCTGGCACGCCTT+TGG | - | chr8.4:43406046-43406065 | MS.gene36852:intron | 60.0% | |
| GAGGCACGCGCTTTCTGTCA+CGG | - | chr8.4:43406400-43406419 | MS.gene36852:intron | 60.0% | |
| GCCGCCGGTGATTCATTCAC+CGG | - | chr8.4:43404631-43404650 | MS.gene36852:CDS | 60.0% | |
| GCCGGTGAATGAATCACCGG+CGG | + | chr8.4:43404635-43404654 | None:intergenic | 60.0% | |
| GCCGGTGATTCATTCACCGG+CGG | - | chr8.4:43404634-43404653 | MS.gene36852:CDS | 60.0% | |
| TCAGGATGTGGACGAGGTGG+TGG | + | chr8.4:43405861-43405880 | None:intergenic | 60.0% | |
| TGCGGATTCACGGTTGCTGC+TGG | + | chr8.4:43406979-43406998 | None:intergenic | 60.0% | |
| ! | ACAGGAGGCTGCAGCATTGG+CGG | - | chr8.4:43406891-43406910 | MS.gene36852:CDS | 60.0% |
| ! | GGATGATGACGATGTCGGCG+AGG | - | chr8.4:43404682-43404701 | MS.gene36852:intron | 60.0% |
| AGCGGAGGCTGGACACTCTC+TGG | - | chr8.4:43406035-43406054 | MS.gene36852:intron | 65.0% | |
| CGAGCCGCTGTTGCAGCAGA+TGG | - | chr8.4:43404706-43404725 | MS.gene36852:intron | 65.0% | |
| GCCAACGGCTCAACCGGCAT+CGG | + | chr8.4:43404578-43404597 | None:intergenic | 65.0% | |
| GGTTCAGGAGCAGGCTGAGC+CGG | + | chr8.4:43404608-43404627 | None:intergenic | 65.0% | |
| TCATTCACCGGCGGGGCCTT+CGG | - | chr8.4:43404643-43404662 | MS.gene36852:intron | 65.0% | |
| TGCTCCTGAACCGATGCCGC+CGG | - | chr8.4:43404616-43404635 | MS.gene36852:CDS | 65.0% | |
| ! | ACCGATGCCGGTTGAGCCGT+TGG | - | chr8.4:43404574-43404593 | MS.gene36852:CDS | 65.0% |
| !! | ATCACCGGCGGCATCGGTTC+AGG | + | chr8.4:43404623-43404642 | None:intergenic | 65.0% |
| CATTCACCGGCGGGGCCTTC+GGG | - | chr8.4:43404644-43404663 | MS.gene36852:intron | 70.0% | |
| GAAGAACCCGAAGGCCCCGC+CGG | + | chr8.4:43404653-43404672 | None:intergenic | 70.0% | |
| !! | GGCGGCATCGGTTCAGGAGC+AGG | + | chr8.4:43404617-43404636 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 43404533 | 43407020 | 43404533 | ID=MS.gene36852 |
| chr8.4 | mRNA | 43404533 | 43407020 | 43404533 | ID=MS.gene36852.t1;Parent=MS.gene36852 |
| chr8.4 | exon | 43406742 | 43407020 | 43406742 | ID=MS.gene36852.t1.exon1;Parent=MS.gene36852.t1 |
| chr8.4 | CDS | 43406742 | 43407020 | 43406742 | ID=cds.MS.gene36852.t1;Parent=MS.gene36852.t1 |
| chr8.4 | exon | 43405940 | 43406011 | 43405940 | ID=MS.gene36852.t1.exon2;Parent=MS.gene36852.t1 |
| chr8.4 | CDS | 43405940 | 43406011 | 43405940 | ID=cds.MS.gene36852.t1;Parent=MS.gene36852.t1 |
| chr8.4 | exon | 43405652 | 43405719 | 43405652 | ID=MS.gene36852.t1.exon3;Parent=MS.gene36852.t1 |
| chr8.4 | CDS | 43405652 | 43405719 | 43405652 | ID=cds.MS.gene36852.t1;Parent=MS.gene36852.t1 |
| chr8.4 | exon | 43405360 | 43405516 | 43405360 | ID=MS.gene36852.t1.exon4;Parent=MS.gene36852.t1 |
| chr8.4 | CDS | 43405360 | 43405516 | 43405360 | ID=cds.MS.gene36852.t1;Parent=MS.gene36852.t1 |
| chr8.4 | exon | 43405093 | 43405173 | 43405093 | ID=MS.gene36852.t1.exon5;Parent=MS.gene36852.t1 |
| chr8.4 | CDS | 43405093 | 43405173 | 43405093 | ID=cds.MS.gene36852.t1;Parent=MS.gene36852.t1 |
| chr8.4 | exon | 43404891 | 43404980 | 43404891 | ID=MS.gene36852.t1.exon6;Parent=MS.gene36852.t1 |
| chr8.4 | CDS | 43404891 | 43404980 | 43404891 | ID=cds.MS.gene36852.t1;Parent=MS.gene36852.t1 |
| chr8.4 | exon | 43404533 | 43404658 | 43404533 | ID=MS.gene36852.t1.exon7;Parent=MS.gene36852.t1 |
| chr8.4 | CDS | 43404533 | 43404658 | 43404533 | ID=cds.MS.gene36852.t1;Parent=MS.gene36852.t1 |
| Gene Sequence |
| Protein sequence |
