Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55219.t1 | XP_003613768.1 | 94.8 | 291 | 10 | 2 | 1 | 287 | 1 | 290 | 1.50E-138 | 502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55219.t1 | A0JN69 | 39.1 | 64 | 36 | 1 | 67 | 130 | 71 | 131 | 1.1e-07 | 58.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55219.t1 | G7KF80 | 94.8 | 291 | 10 | 2 | 1 | 287 | 1 | 290 | 1.1e-138 | 502.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene55219 | -0.812631 | 3.85E-51 | -1.69E-46 |
| MS.gene049150 | MS.gene55219 | -0.841467 | 4.67E-58 | -1.69E-46 |
| MS.gene049151 | MS.gene55219 | -0.836654 | 8.25E-57 | -1.69E-46 |
| MS.gene049153 | MS.gene55219 | -0.841771 | 3.88E-58 | -1.69E-46 |
| MS.gene049260 | MS.gene55219 | -0.861896 | 7.43E-64 | -1.69E-46 |
| MS.gene049297 | MS.gene55219 | -0.806477 | 8.07E-50 | -1.69E-46 |
| MS.gene049346 | MS.gene55219 | -0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene55219 | -0.811783 | 5.89E-51 | -1.69E-46 |
| MS.gene049599 | MS.gene55219 | 0.84958 | 2.95E-60 | -1.69E-46 |
| MS.gene049758 | MS.gene55219 | -0.874258 | 7.77E-68 | -1.69E-46 |
| MS.gene049910 | MS.gene55219 | -0.805633 | 1.21E-49 | -1.69E-46 |
| MS.gene049915 | MS.gene55219 | -0.802151 | 6.43E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene55219 | -0.836739 | 7.84E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene55219 | -0.851608 | 7.94E-61 | -1.69E-46 |
| MS.gene050228 | MS.gene55219 | -0.840384 | 8.98E-58 | -1.69E-46 |
| MS.gene050301 | MS.gene55219 | -0.809114 | 2.22E-50 | -1.69E-46 |
| MS.gene050319 | MS.gene55219 | 0.808279 | 3.35E-50 | -1.69E-46 |
| MS.gene050330 | MS.gene55219 | 0.890392 | 1.03E-73 | -1.69E-46 |
| MS.gene050438 | MS.gene55219 | -0.831753 | 1.40E-55 | -1.69E-46 |
| MS.gene050558 | MS.gene55219 | -0.84631 | 2.35E-59 | -1.69E-46 |
| MS.gene050560 | MS.gene55219 | -0.808763 | 2.64E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene55219 | 0.839672 | 1.38E-57 | -1.69E-46 |
| MS.gene050642 | MS.gene55219 | -0.845014 | 5.29E-59 | -1.69E-46 |
| MS.gene050719 | MS.gene55219 | -0.808119 | 3.62E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene55219 | -0.809932 | 1.48E-50 | -1.69E-46 |
| MS.gene050724 | MS.gene55219 | -0.827265 | 1.72E-54 | -1.69E-46 |
| MS.gene050762 | MS.gene55219 | -0.80046 | 1.43E-48 | -1.69E-46 |
| MS.gene050763 | MS.gene55219 | -0.805544 | 1.27E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene55219 | -0.850628 | 1.50E-60 | -1.69E-46 |
| MS.gene050815 | MS.gene55219 | -0.834716 | 2.55E-56 | -1.69E-46 |
| MS.gene050820 | MS.gene55219 | -0.803016 | 4.26E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene55219 | 0.827283 | 1.70E-54 | -1.69E-46 |
| MS.gene051344 | MS.gene55219 | -0.802619 | 5.15E-49 | -1.69E-46 |
| MS.gene051487 | MS.gene55219 | -0.825255 | 5.18E-54 | -1.69E-46 |
| MS.gene051663 | MS.gene55219 | -0.824157 | 9.40E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene55219 | -0.878889 | 1.95E-69 | -1.69E-46 |
| MS.gene051983 | MS.gene55219 | -0.833564 | 4.96E-56 | -1.69E-46 |
| MS.gene052011 | MS.gene55219 | 0.802076 | 6.66E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene55219 | -0.814233 | 1.71E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene55219 | -0.826817 | 2.20E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene55219 | -0.80189 | 7.27E-49 | -1.69E-46 |
| MS.gene052207 | MS.gene55219 | -0.805552 | 1.26E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene55219 | -0.800016 | 1.76E-48 | -1.69E-46 |
| MS.gene052255 | MS.gene55219 | -0.809046 | 2.30E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene55219 | 0.818345 | 2.06E-52 | -1.69E-46 |
| MS.gene052344 | MS.gene55219 | 0.828267 | 9.89E-55 | -1.69E-46 |
| MS.gene052600 | MS.gene55219 | -0.811709 | 6.11E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene55219 | -0.80012 | 1.67E-48 | -1.69E-46 |
| MS.gene052917 | MS.gene55219 | 0.813587 | 2.37E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene55219 | -0.821394 | 4.13E-53 | -1.69E-46 |
| MS.gene053054 | MS.gene55219 | 0.802904 | 4.50E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene55219 | -0.824455 | 8.00E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene55219 | -0.867675 | 1.15E-65 | -1.69E-46 |
| MS.gene054011 | MS.gene55219 | -0.810067 | 1.39E-50 | -1.69E-46 |
| MS.gene054184 | MS.gene55219 | -0.860586 | 1.86E-63 | -1.69E-46 |
| MS.gene054185 | MS.gene55219 | -0.860011 | 2.78E-63 | -1.69E-46 |
| MS.gene054379 | MS.gene55219 | -0.808806 | 2.58E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene55219 | -0.852547 | 4.30E-61 | -1.69E-46 |
| MS.gene054542 | MS.gene55219 | -0.844136 | 9.11E-59 | -1.69E-46 |
| MS.gene054667 | MS.gene55219 | -0.807549 | 4.79E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene55219 | -0.817408 | 3.35E-52 | -1.69E-46 |
| MS.gene054942 | MS.gene55219 | -0.81384 | 2.09E-51 | -1.69E-46 |
| MS.gene054983 | MS.gene55219 | -0.811338 | 7.36E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene55219 | -0.805622 | 1.22E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene55219 | -0.837601 | 4.72E-57 | -1.69E-46 |
| MS.gene055358 | MS.gene55219 | -0.84165 | 4.18E-58 | -1.69E-46 |
| MS.gene055363 | MS.gene55219 | -0.803665 | 3.13E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene55219 | -0.830499 | 2.84E-55 | -1.69E-46 |
| MS.gene055428 | MS.gene55219 | -0.81435 | 1.61E-51 | -1.69E-46 |
| MS.gene055509 | MS.gene55219 | -0.813028 | 3.15E-51 | -1.69E-46 |
| MS.gene055604 | MS.gene55219 | -0.813893 | 2.03E-51 | -1.69E-46 |
| MS.gene056069 | MS.gene55219 | 0.856753 | 2.60E-62 | -1.69E-46 |
| MS.gene056875 | MS.gene55219 | -0.84037 | 9.06E-58 | -1.69E-46 |
| MS.gene056979 | MS.gene55219 | -0.825895 | 3.65E-54 | -1.69E-46 |
| MS.gene057121 | MS.gene55219 | -0.827554 | 1.47E-54 | -1.69E-46 |
| MS.gene057260 | MS.gene55219 | -0.849141 | 3.91E-60 | -1.69E-46 |
| MS.gene057439 | MS.gene55219 | -0.803007 | 4.28E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene55219 | -0.843031 | 1.80E-58 | -1.69E-46 |
| MS.gene057750 | MS.gene55219 | -0.80093 | 1.14E-48 | -1.69E-46 |
| MS.gene057754 | MS.gene55219 | -0.800934 | 1.14E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene55219 | -0.828532 | 8.53E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene55219 | -0.864633 | 1.06E-64 | -1.69E-46 |
| MS.gene058139 | MS.gene55219 | -0.843943 | 1.03E-58 | -1.69E-46 |
| MS.gene058168 | MS.gene55219 | -0.816728 | 4.76E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene55219 | -0.828133 | 1.06E-54 | -1.69E-46 |
| MS.gene058399 | MS.gene55219 | -0.811938 | 5.45E-51 | -1.69E-46 |
| MS.gene058484 | MS.gene55219 | -0.81161 | 6.42E-51 | -1.69E-46 |
| MS.gene058749 | MS.gene55219 | -0.829806 | 4.19E-55 | -1.69E-46 |
| MS.gene058792 | MS.gene55219 | -0.800685 | 1.28E-48 | -1.69E-46 |
| MS.gene058833 | MS.gene55219 | -0.811986 | 5.32E-51 | -1.69E-46 |
| MS.gene058845 | MS.gene55219 | -0.806818 | 6.84E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene55219 | -0.81029 | 1.24E-50 | -1.69E-46 |
| MS.gene059124 | MS.gene55219 | -0.803661 | 3.13E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene55219 | -0.810965 | 8.87E-51 | -1.69E-46 |
| MS.gene059421 | MS.gene55219 | -0.836298 | 1.02E-56 | -1.69E-46 |
| MS.gene059518 | MS.gene55219 | -0.852073 | 5.86E-61 | -1.69E-46 |
| MS.gene059609 | MS.gene55219 | -0.800303 | 1.54E-48 | -1.69E-46 |
| MS.gene059789 | MS.gene55219 | -0.825711 | 4.04E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene55219 | -0.883077 | 6.09E-71 | -1.69E-46 |
| MS.gene060137 | MS.gene55219 | 0.807515 | 4.87E-50 | -1.69E-46 |
| MS.gene060165 | MS.gene55219 | -0.802635 | 5.11E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene55219 | -0.807481 | 4.95E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene55219 | -0.826441 | 2.71E-54 | -1.69E-46 |
| MS.gene060619 | MS.gene55219 | -0.803997 | 2.67E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene55219 | -0.835107 | 2.03E-56 | -1.69E-46 |
| MS.gene060685 | MS.gene55219 | -0.833094 | 6.50E-56 | -1.69E-46 |
| MS.gene060803 | MS.gene55219 | -0.823078 | 1.68E-53 | -1.69E-46 |
| MS.gene060994 | MS.gene55219 | -0.833327 | 5.68E-56 | -1.69E-46 |
| MS.gene061000 | MS.gene55219 | -0.828119 | 1.07E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene55219 | 0.805608 | 1.23E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene55219 | -0.832036 | 1.19E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55219 | MS.gene032904 | PPI |
| MS.gene070573 | MS.gene55219 | PPI |
| MS.gene55219 | MS.gene25499 | PPI |
| MS.gene36852 | MS.gene55219 | PPI |
| MS.gene25499 | MS.gene55219 | PPI |
| MS.gene55219 | MS.gene045950 | PPI |
| MS.gene045950 | MS.gene55219 | PPI |
| MS.gene55219 | MS.gene34660 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55219.t1 | MTR_5g040650 | 97.251 | 291 | 3 | 2 | 1 | 287 | 1 | 290 | 0.0 | 568 |
| MS.gene55219.t1 | MTR_5g040650 | 96.813 | 251 | 3 | 2 | 1 | 247 | 1 | 250 | 3.57e-177 | 489 |
| MS.gene55219.t1 | MTR_8g467220 | 75.258 | 291 | 62 | 6 | 1 | 287 | 1 | 285 | 1.07e-135 | 385 |
| MS.gene55219.t1 | MTR_1g108490 | 42.857 | 196 | 105 | 4 | 63 | 255 | 55 | 246 | 1.68e-55 | 180 |
| MS.gene55219.t1 | MTR_1g108490 | 44.444 | 162 | 84 | 2 | 63 | 224 | 55 | 210 | 1.09e-46 | 156 |
| MS.gene55219.t1 | MTR_7g082950 | 37.981 | 208 | 118 | 6 | 65 | 270 | 14 | 212 | 4.33e-44 | 149 |
| MS.gene55219.t1 | MTR_7g082950 | 46.377 | 138 | 65 | 4 | 65 | 202 | 14 | 142 | 1.11e-38 | 134 |
| MS.gene55219.t1 | MTR_7g109460 | 40.642 | 187 | 93 | 8 | 67 | 247 | 20 | 194 | 1.34e-37 | 132 |
| MS.gene55219.t1 | MTR_1g087150 | 40.571 | 175 | 96 | 5 | 56 | 225 | 9 | 180 | 1.06e-30 | 114 |
| MS.gene55219.t1 | MTR_7g109460 | 42.177 | 147 | 71 | 5 | 67 | 209 | 20 | 156 | 1.16e-30 | 113 |
| MS.gene55219.t1 | MTR_1g087150 | 40.571 | 175 | 96 | 5 | 56 | 225 | 9 | 180 | 3.19e-30 | 114 |
| MS.gene55219.t1 | MTR_7g010610 | 49.275 | 69 | 35 | 0 | 63 | 131 | 31 | 99 | 1.59e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55219.t1 | AT2G02960 | 76.471 | 221 | 48 | 3 | 57 | 276 | 33 | 250 | 1.40e-105 | 308 |
| MS.gene55219.t1 | AT2G02960 | 76.471 | 221 | 48 | 3 | 57 | 276 | 33 | 250 | 1.40e-105 | 308 |
| MS.gene55219.t1 | AT2G02960 | 76.471 | 221 | 48 | 3 | 57 | 276 | 33 | 250 | 1.40e-105 | 308 |
| MS.gene55219.t1 | AT2G02960 | 76.471 | 221 | 48 | 3 | 57 | 276 | 33 | 250 | 1.40e-105 | 308 |
| MS.gene55219.t1 | AT2G02960 | 76.471 | 221 | 48 | 3 | 57 | 276 | 33 | 250 | 1.40e-105 | 308 |
| MS.gene55219.t1 | AT3G47550 | 64.931 | 288 | 91 | 6 | 1 | 282 | 1 | 284 | 9.38e-104 | 304 |
| MS.gene55219.t1 | AT3G47550 | 64.931 | 288 | 91 | 6 | 1 | 282 | 1 | 284 | 9.38e-104 | 304 |
| MS.gene55219.t1 | AT1G14260 | 63.019 | 265 | 83 | 5 | 4 | 267 | 5 | 255 | 5.05e-89 | 266 |
| MS.gene55219.t1 | AT1G14260 | 63.019 | 265 | 83 | 5 | 4 | 267 | 5 | 255 | 5.05e-89 | 266 |
| MS.gene55219.t1 | AT1G14260 | 63.019 | 265 | 83 | 5 | 4 | 267 | 5 | 255 | 5.05e-89 | 266 |
| MS.gene55219.t1 | AT5G62460 | 74.561 | 228 | 48 | 4 | 56 | 275 | 80 | 305 | 8.61e-89 | 267 |
| MS.gene55219.t1 | AT5G62460 | 74.123 | 228 | 49 | 4 | 56 | 275 | 67 | 292 | 9.19e-89 | 267 |
| MS.gene55219.t1 | AT5G62460 | 74.123 | 228 | 49 | 4 | 56 | 275 | 67 | 292 | 9.19e-89 | 267 |
| MS.gene55219.t1 | AT3G47550 | 64.344 | 244 | 79 | 5 | 1 | 240 | 1 | 240 | 2.25e-86 | 258 |
| MS.gene55219.t1 | AT2G02960 | 78.082 | 146 | 30 | 1 | 57 | 202 | 33 | 176 | 5.05e-69 | 215 |
| MS.gene55219.t1 | AT3G47550 | 60.811 | 222 | 79 | 5 | 1 | 218 | 1 | 218 | 1.47e-68 | 213 |
| MS.gene55219.t1 | AT2G01275 | 39.344 | 244 | 127 | 7 | 1 | 242 | 1 | 225 | 1.49e-50 | 167 |
| MS.gene55219.t1 | AT2G01275 | 39.344 | 244 | 127 | 7 | 1 | 242 | 1 | 225 | 1.49e-50 | 167 |
| MS.gene55219.t1 | AT2G01275 | 39.344 | 244 | 127 | 7 | 1 | 242 | 1 | 225 | 1.49e-50 | 167 |
| MS.gene55219.t1 | AT2G01275 | 39.344 | 244 | 127 | 7 | 1 | 242 | 27 | 251 | 1.70e-50 | 168 |
| MS.gene55219.t1 | AT2G01275 | 39.344 | 244 | 127 | 7 | 1 | 242 | 27 | 251 | 1.70e-50 | 168 |
| MS.gene55219.t1 | AT5G38070 | 36.255 | 251 | 135 | 6 | 1 | 249 | 1 | 228 | 3.95e-41 | 143 |
| MS.gene55219.t1 | AT4G02075 | 37.629 | 194 | 103 | 4 | 56 | 247 | 9 | 186 | 1.11e-38 | 135 |
| MS.gene55219.t1 | AT4G02075 | 37.629 | 194 | 103 | 4 | 56 | 247 | 9 | 186 | 1.42e-38 | 135 |
| MS.gene55219.t1 | AT1G02610 | 36.066 | 183 | 106 | 4 | 67 | 247 | 20 | 193 | 8.53e-33 | 120 |
| MS.gene55219.t1 | AT1G02610 | 36.066 | 183 | 106 | 4 | 67 | 247 | 20 | 193 | 1.25e-32 | 119 |
| MS.gene55219.t1 | AT4G02075 | 38.596 | 171 | 84 | 5 | 56 | 221 | 9 | 163 | 1.88e-31 | 115 |
Find 93 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAACCACTATTGAAAT+AGG | 0.204032 | 5.2:-30554776 | MS.gene55219:CDS |
| GGAAGACAGTGTTTCCAATT+TGG | 0.230598 | 5.2:-30556741 | MS.gene55219:CDS |
| GTGCATGCCGCAAAAGTAAA+AGG | 0.236416 | 5.2:+30554120 | None:intergenic |
| CTTGCGTGATCCTCGACTTT+TGG | 0.256892 | 5.2:-30554549 | MS.gene55219:CDS |
| ATAGTGGTTTCTTCAGGAAT+AGG | 0.347604 | 5.2:+30554785 | None:intergenic |
| AATATTCAGCCTTATCAATC+TGG | 0.348621 | 5.2:-30554830 | MS.gene55219:intron |
| ATTTCAATAGTGGTTTCTTC+AGG | 0.350976 | 5.2:+30554779 | None:intergenic |
| ATCTTACCCTATTTCAATAG+TGG | 0.355747 | 5.2:+30554769 | None:intergenic |
| AGAGGAGGCTGGACATTATC+TGG | 0.364653 | 5.2:-30554584 | MS.gene55219:CDS |
| TACCTTGCTATATTATGGCT+TGG | 0.367363 | 5.2:-30553912 | MS.gene55219:CDS |
| TCAGGAATAGGGCGAGGTGG+TGG | 0.373410 | 5.2:+30554797 | None:intergenic |
| ACCGCCGATGCTGGATCATC+TGG | 0.376709 | 5.2:-30556842 | MS.gene55219:CDS |
| ACCTTGCTATATTATGGCTT+GGG | 0.376940 | 5.2:-30553911 | MS.gene55219:CDS |
| GGCACAGGGAGTCTCCAAAT+TGG | 0.387742 | 5.2:+30556727 | None:intergenic |
| TGTTGGTCAACAGGAACAAC+TGG | 0.394104 | 5.2:+30556914 | None:intergenic |
| TAGTGGTTTCTTCAGGAATA+GGG | 0.397798 | 5.2:+30554786 | None:intergenic |
| CTTTCTCATTGCACCAATGC+TGG | 0.404082 | 5.2:+30555643 | None:intergenic |
| TCTCCGACCACCGCCGATGC+TGG | 0.411796 | 5.2:-30556851 | MS.gene55219:CDS |
| ATCTGGATCTGGCTCGGCGG+TGG | 0.414945 | 5.2:-30556825 | MS.gene55219:CDS |
| GAAGGTGGTGGGCAGGTTGT+TGG | 0.414952 | 5.2:+30556897 | None:intergenic |
| GACATTATCTGGCTCACCCT+TGG | 0.418122 | 5.2:-30554573 | MS.gene55219:CDS |
| AACTTTCTTGCAGAGGAGGC+TGG | 0.424560 | 5.2:-30554595 | MS.gene55219:intron |
| CGGTGGTCGGAGATGGCGAT+GGG | 0.427989 | 5.2:+30556861 | None:intergenic |
| AGAGGCAGAACGTCAATTCC+TGG | 0.431011 | 5.2:-30554519 | MS.gene55219:CDS |
| TGGGCAGGTTGTTGGTCAAC+AGG | 0.434759 | 5.2:+30556905 | None:intergenic |
| AAGAAACCACTATTGAAATA+GGG | 0.437347 | 5.2:-30554775 | MS.gene55219:intron |
| ACTGTAGGTCCTGGAGGTCC+TGG | 0.440890 | 5.2:+30553590 | None:intergenic |
| AATGATCGGAAGGAAGGTGG+TGG | 0.456132 | 5.2:+30556885 | None:intergenic |
| ACTACCAAGTGATCGCTCAT+TGG | 0.456166 | 5.2:+30556959 | None:intergenic |
| CAGGAATAGGGCGAGGTGGT+GGG | 0.456864 | 5.2:+30554798 | None:intergenic |
| GATGCTGGATCATCTGGATC+TGG | 0.456987 | 5.2:-30556836 | MS.gene55219:CDS |
| GAACACTGACTTGTCTTTGT+CGG | 0.478778 | 5.2:+30553866 | None:intergenic |
| AATTTAGAACAAAAGCAACT+TGG | 0.479789 | 5.2:+30553648 | None:intergenic |
| TCCTGCTGTACTGTAGGTCC+TGG | 0.480306 | 5.2:+30553581 | None:intergenic |
| AGATACGGCACTCAACCATC+TGG | 0.480714 | 5.2:+30556771 | None:intergenic |
| GGTTGAGTGCCGTATCTGTC+AGG | 0.494067 | 5.2:-30556765 | MS.gene55219:CDS |
| TCCTGGAGGTCCTGGTGCTA+TGG | 0.494451 | 5.2:+30553598 | None:intergenic |
| GCGGTGGTCGGAGATGGCGA+TGG | 0.495396 | 5.2:+30556860 | None:intergenic |
| GCATCGGCGGTGGTCGGAGA+TGG | 0.496661 | 5.2:+30556854 | None:intergenic |
| TCGGAAGGAAGGTGGTGGGC+AGG | 0.502664 | 5.2:+30556890 | None:intergenic |
| GAGACTACCGCTACAGGCAC+AGG | 0.503593 | 5.2:+30556712 | None:intergenic |
| AACTTGTGAGATATGTCATC+AGG | 0.505014 | 5.2:-30555613 | MS.gene55219:intron |
| TACCTTGAGACTACCGCTAC+AGG | 0.507838 | 5.2:+30556706 | None:intergenic |
| CAGCATTGGTGCAATGAGAA+AGG | 0.519925 | 5.2:-30555642 | MS.gene55219:CDS |
| ATTTAGAACAAAAGCAACTT+GGG | 0.519948 | 5.2:+30553649 | None:intergenic |
| GCCATAGCACCAGGACCTCC+AGG | 0.524360 | 5.2:-30553599 | MS.gene55219:CDS |
| GGGAATGATCGGAAGGAAGG+TGG | 0.530407 | 5.2:+30556882 | None:intergenic |
| TCGAGGATCACGCAAGTCCA+AGG | 0.531123 | 5.2:+30554556 | None:intergenic |
| TCCAGGACCTACAGTACAGC+AGG | 0.533517 | 5.2:-30553582 | MS.gene55219:CDS |
| ACAGAAAGTGTGTCCAGCAT+TGG | 0.533571 | 5.2:-30555656 | MS.gene55219:CDS |
| ACTTGTTCCTGCTGTACTGT+AGG | 0.533667 | 5.2:+30553575 | None:intergenic |
| TTTCCCAATGAGCGATCACT+TGG | 0.540113 | 5.2:-30556963 | None:intergenic |
| GCAGTATACCCAGATTGATA+AGG | 0.540164 | 5.2:+30554821 | None:intergenic |
| TGCATGCCGCAAAAGTAAAA+GGG | 0.544452 | 5.2:+30554121 | None:intergenic |
| ATGGGGAATGATCGGAAGGA+AGG | 0.548616 | 5.2:+30556879 | None:intergenic |
| GAACAACTGGGTGGTCGAGT+TGG | 0.550257 | 5.2:+30556927 | None:intergenic |
| CTACACTTCGCCATAGCACC+AGG | 0.550759 | 5.2:-30553608 | MS.gene55219:CDS |
| ATATTCAGCCTTATCAATCT+GGG | 0.551118 | 5.2:-30554829 | MS.gene55219:intron |
| ACTCATCATATTCAGCATCC+AGG | 0.551789 | 5.2:+30554501 | None:intergenic |
| TGCTGTACTGTAGGTCCTGG+AGG | 0.564156 | 5.2:+30553584 | None:intergenic |
| AGATGGCGATGGGGAATGAT+CGG | 0.565732 | 5.2:+30556871 | None:intergenic |
| AGGAATAGGGCGAGGTGGTG+GGG | 0.566322 | 5.2:+30554799 | None:intergenic |
| TGTCTTCCTCCTGACAGATA+CGG | 0.567028 | 5.2:+30556756 | None:intergenic |
| TGCCTGTAGCGGTAGTCTCA+AGG | 0.574911 | 5.2:-30556708 | MS.gene55219:intron |
| GTTTCTTCAGGAATAGGGCG+AGG | 0.582205 | 5.2:+30554791 | None:intergenic |
| GGCGATGGGGAATGATCGGA+AGG | 0.583505 | 5.2:+30556875 | None:intergenic |
| GGCTCGGCGGTGGATCGTGA+TGG | 0.587661 | 5.2:-30556815 | MS.gene55219:CDS |
| AGATGATCCAGCATCGGCGG+TGG | 0.592577 | 5.2:+30556844 | None:intergenic |
| CACTCAACCATCTGGATCAG+TGG | 0.593877 | 5.2:+30556779 | None:intergenic |
| CATGCACTCTCTGTAACAGA+TGG | 0.596020 | 5.2:-30554104 | MS.gene55219:CDS |
| GATCCAGCATCGGCGGTGGT+CGG | 0.599580 | 5.2:+30556848 | None:intergenic |
| ATGATCGGAAGGAAGGTGGT+GGG | 0.601522 | 5.2:+30556886 | None:intergenic |
| TGGATCATCTGGATCTGGCT+CGG | 0.605051 | 5.2:-30556831 | MS.gene55219:CDS |
| TATGCTGCTTCTAATGCTAG+TGG | 0.606341 | 5.2:-30554479 | MS.gene55219:CDS |
| CTAAATTCTGGGCAGCGTAG+AGG | 0.608192 | 5.2:-30553632 | MS.gene55219:CDS |
| TCCAGATGATCCAGCATCGG+CGG | 0.608773 | 5.2:+30556841 | None:intergenic |
| CACTGACTTGTCTTTGTCGG+CGG | 0.613302 | 5.2:+30553869 | None:intergenic |
| GGATCGTGATGGCGATGAGG+AGG | 0.616205 | 5.2:-30556804 | MS.gene55219:CDS |
| GCCCAAGCCATAATATAGCA+AGG | 0.617032 | 5.2:+30553910 | None:intergenic |
| CGAGGATCACGCAAGTCCAA+GGG | 0.619797 | 5.2:+30554557 | None:intergenic |
| AGATCCAGATGATCCAGCAT+CGG | 0.626452 | 5.2:+30556838 | None:intergenic |
| AGACTACCGCTACAGGCACA+GGG | 0.636998 | 5.2:+30556713 | None:intergenic |
| GAGACTCCCTGTGCCTGTAG+CGG | 0.639323 | 5.2:-30556719 | MS.gene55219:CDS |
| ATCATCTGGATCTGGCTCGG+CGG | 0.641368 | 5.2:-30556828 | MS.gene55219:CDS |
| TCTTCAGGAATAGGGCGAGG+TGG | 0.642080 | 5.2:+30554794 | None:intergenic |
| TCTGCAATCGCCAAAAGTCG+AGG | 0.642761 | 5.2:+30554539 | None:intergenic |
| GGAGGAGCCACTGATCCAGA+TGG | 0.656675 | 5.2:-30556786 | MS.gene55219:CDS |
| GTTGGTCAACAGGAACAACT+GGG | 0.659884 | 5.2:+30556915 | None:intergenic |
| GGTGGTCGGAGATGGCGATG+GGG | 0.673400 | 5.2:+30556862 | None:intergenic |
| GGTGGATCGTGATGGCGATG+AGG | 0.679783 | 5.2:-30556807 | MS.gene55219:CDS |
| TGAGTGCCGTATCTGTCAGG+AGG | 0.681591 | 5.2:-30556762 | MS.gene55219:CDS |
| TTACAATTAGAGCAGCTGAG+CGG | 0.741254 | 5.2:+30554444 | None:intergenic |
| GGTCAACAGGAACAACTGGG+TGG | 0.749101 | 5.2:+30556918 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAAAAAATGTGAATAA+TGG | - | chr5.2:30554337-30554356 | MS.gene55219:intron | 15.0% |
| !! | TTTGTCTATGAAAAAAATAT+GGG | - | chr5.2:30555455-30555474 | MS.gene55219:intron | 15.0% |
| !!! | ATGTGAATATTTTTTTAAAG+TGG | - | chr5.2:30555003-30555022 | MS.gene55219:intron | 15.0% |
| !!! | CGTTATTTTTTAATTTTTGT+AGG | - | chr5.2:30553869-30553888 | MS.gene55219:intron | 15.0% |
| !!! | TTTTGTCTATGAAAAAAATA+TGG | - | chr5.2:30555454-30555473 | MS.gene55219:intron | 15.0% |
| !! | AAAATTCCACACAAAAATAT+CGG | + | chr5.2:30554363-30554382 | None:intergenic | 20.0% |
| !! | AAGTCATGTATATAACATAT+AGG | - | chr5.2:30555189-30555208 | MS.gene55219:intron | 20.0% |
| !! | AATCAATAATCATGTATGAT+TGG | - | chr5.2:30553998-30554017 | MS.gene55219:intron | 20.0% |
| !! | ACATAAATCAATATAACAGT+CGG | + | chr5.2:30556526-30556545 | None:intergenic | 20.0% |
| !! | ATATGTTATATACATGACTT+GGG | + | chr5.2:30555189-30555208 | None:intergenic | 20.0% |
| !! | ATCAATAATCATGTATGATT+GGG | - | chr5.2:30553999-30554018 | MS.gene55219:intron | 20.0% |
| !! | GTACCAAACATTAAAAAATT+GGG | + | chr5.2:30556377-30556396 | None:intergenic | 20.0% |
| !! | TATATGTTATATACATGACT+TGG | + | chr5.2:30555190-30555209 | None:intergenic | 20.0% |
| !! | TGTACCAAACATTAAAAAAT+TGG | + | chr5.2:30556378-30556397 | None:intergenic | 20.0% |
| !! | TTACAAAACTCTGTATAATT+TGG | - | chr5.2:30556133-30556152 | MS.gene55219:intron | 20.0% |
| !! | TTGTCTATGAAAAAAATATG+GGG | - | chr5.2:30555456-30555475 | MS.gene55219:intron | 20.0% |
| !!! | TAACCCAATTTTTTAATGTT+TGG | - | chr5.2:30556371-30556390 | MS.gene55219:intron | 20.0% |
| !!! | TTATACAGAGTTTTGTAAAA+TGG | + | chr5.2:30556131-30556150 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTGTTAGGAAAT+GGG | - | chr5.2:30555387-30555406 | MS.gene55219:intron | 20.0% |
| !!! | TTTTCAATTTTGTTAGGAAA+TGG | - | chr5.2:30555386-30555405 | MS.gene55219:intron | 20.0% |
| ! | AAGAAACCACTATTGAAATA+GGG | - | chr5.2:30555752-30555771 | MS.gene55219:intron | 25.0% |
| ! | AAGCAAAAAACAATTTCTCA+CGG | + | chr5.2:30554712-30554731 | None:intergenic | 25.0% |
| ! | ACACAAATGATATTAAGCAT+TGG | + | chr5.2:30555605-30555624 | None:intergenic | 25.0% |
| ! | CACAAATGATATTAAGCATT+GGG | + | chr5.2:30555604-30555623 | None:intergenic | 25.0% |
| ! | CACAACTAAATTATACTTCA+AGG | - | chr5.2:30555505-30555524 | MS.gene55219:intron | 25.0% |
| ! | GAGTTTATGAAATATTGTGT+TGG | - | chr5.2:30554618-30554637 | MS.gene55219:intron | 25.0% |
| ! | TATGAAGCTAATTCAGATTA+GGG | + | chr5.2:30554323-30554342 | None:intergenic | 25.0% |
| ! | TCAATAATCATGTATGATTG+GGG | - | chr5.2:30554000-30554019 | MS.gene55219:intron | 25.0% |
| ! | TCCTAACAAAATTGAAAATC+AGG | + | chr5.2:30555384-30555403 | None:intergenic | 25.0% |
| ! | TGATCGATCAATTTGAAAAA+TGG | - | chr5.2:30554239-30554258 | MS.gene55219:intron | 25.0% |
| ! | TGATTAATGCATTAATGTGA+TGG | - | chr5.2:30554745-30554764 | MS.gene55219:intron | 25.0% |
| ! | TGTCTATGAAAAAAATATGG+GGG | - | chr5.2:30555457-30555476 | MS.gene55219:intron | 25.0% |
| ! | TTATGAAGCTAATTCAGATT+AGG | + | chr5.2:30554324-30554343 | None:intergenic | 25.0% |
| !! | AATTTAGAACAAAAGCAACT+TGG | + | chr5.2:30556882-30556901 | None:intergenic | 25.0% |
| !! | ATTTAGAACAAAAGCAACTT+GGG | + | chr5.2:30556881-30556900 | None:intergenic | 25.0% |
| !! | ATTTTTGAACTGTTGGTATT+TGG | - | chr5.2:30554831-30554850 | MS.gene55219:intron | 25.0% |
| !! | TCCTGATTTTCAATTTTGTT+AGG | - | chr5.2:30555380-30555399 | MS.gene55219:intron | 25.0% |
| !! | TTGTAACTTTGTATTTTGTG+TGG | - | chr5.2:30555553-30555572 | MS.gene55219:intron | 25.0% |
| !!! | ACTGTTTTTGTATTTTGAAC+AGG | - | chr5.2:30556834-30556853 | MS.gene55219:CDS | 25.0% |
| !!! | GTTATATTGATTTATGTGAC+CGG | - | chr5.2:30556529-30556548 | MS.gene55219:intron | 25.0% |
| !!! | TCTTTTACCTTGCTATATTA+TGG | - | chr5.2:30556610-30556629 | MS.gene55219:intron | 25.0% |
| !!! | TTGCTTTTGTTCTAAATTCT+GGG | - | chr5.2:30556884-30556903 | MS.gene55219:CDS | 25.0% |
| AAAAATAAGCCAATCCAAAC+AGG | + | chr5.2:30554027-30554046 | None:intergenic | 30.0% | |
| AAAGCTCTATTGTTAGTAGA+AGG | + | chr5.2:30555149-30555168 | None:intergenic | 30.0% | |
| AGCAAAAAACAATTTCTCAC+GGG | + | chr5.2:30554711-30554730 | None:intergenic | 30.0% | |
| ATACCAACAGTTCAAAAATC+AGG | + | chr5.2:30554830-30554849 | None:intergenic | 30.0% | |
| ATAGAGACTCAAATCACTTA+CGG | + | chr5.2:30556484-30556503 | None:intergenic | 30.0% | |
| ATCACTTACGGAGAAAAAAT+TGG | + | chr5.2:30556472-30556491 | None:intergenic | 30.0% | |
| ATCCACATCAATGTAGAAAA+TGG | + | chr5.2:30554598-30554617 | None:intergenic | 30.0% | |
| ATCTTACCCTATTTCAATAG+TGG | + | chr5.2:30555761-30555780 | None:intergenic | 30.0% | |
| ATGAAGCTAATTCAGATTAG+GGG | + | chr5.2:30554322-30554341 | None:intergenic | 30.0% | |
| ATTTCAATAGTGGTTTCTTC+AGG | + | chr5.2:30555751-30555770 | None:intergenic | 30.0% | |
| CAATAATCATGTATGATTGG+GGG | - | chr5.2:30554001-30554020 | MS.gene55219:intron | 30.0% | |
| CGACAAAAAGACAACTTATT+CGG | + | chr5.2:30554970-30554989 | None:intergenic | 30.0% | |
| CGATCAATTTGAAAAATGGT+TGG | - | chr5.2:30554243-30554262 | MS.gene55219:intron | 30.0% | |
| GAAGAAACCACTATTGAAAT+AGG | - | chr5.2:30555751-30555770 | MS.gene55219:intron | 30.0% | |
| GCAGCTTATACAAATAAGTA+AGG | - | chr5.2:30554061-30554080 | MS.gene55219:intron | 30.0% | |
| GTCTATGAAAAAAATATGGG+GGG | - | chr5.2:30555458-30555477 | MS.gene55219:intron | 30.0% | |
| TACAGTAGTGTAACATATGT+TGG | - | chr5.2:30555213-30555232 | MS.gene55219:intron | 30.0% | |
| TCCACATCAATGTAGAAAAT+GGG | + | chr5.2:30554597-30554616 | None:intergenic | 30.0% | |
| TGATCGATCATATCATTCTA+GGG | + | chr5.2:30554229-30554248 | None:intergenic | 30.0% | |
| TGTATAAGCTGCTAAAAGTA+AGG | + | chr5.2:30554053-30554072 | None:intergenic | 30.0% | |
| TTAATGTTTGGTACAGTTGA+TGG | - | chr5.2:30556383-30556402 | MS.gene55219:intron | 30.0% | |
| TTGATCGATCATATCATTCT+AGG | + | chr5.2:30554230-30554249 | None:intergenic | 30.0% | |
| TTGTTAGGAAATGGGATTTA+AGG | - | chr5.2:30555395-30555414 | MS.gene55219:intron | 30.0% | |
| TTTGTAAAATGGAAGGCAAA+AGG | + | chr5.2:30556120-30556139 | None:intergenic | 30.0% | |
| ! | AAGTGATCTAATTTGCAACT+AGG | + | chr5.2:30554667-30554686 | None:intergenic | 30.0% |
| ! | AATATTCAGCCTTATCAATC+TGG | - | chr5.2:30555697-30555716 | MS.gene55219:intron | 30.0% |
| ! | ACTGATTTCAGAACAATCAT+TGG | - | chr5.2:30555119-30555138 | MS.gene55219:intron | 30.0% |
| ! | AGCATTGGGTTTAATTCAAA+AGG | + | chr5.2:30555590-30555609 | None:intergenic | 30.0% |
| ! | ATATTCAGCCTTATCAATCT+GGG | - | chr5.2:30555698-30555717 | MS.gene55219:intron | 30.0% |
| ! | CGAATAAGTTGTCTTTTTGT+CGG | - | chr5.2:30554968-30554987 | MS.gene55219:intron | 30.0% |
| ! | TGCATGATAATTTAAGACAC+CGG | - | chr5.2:30554433-30554452 | MS.gene55219:intron | 30.0% |
| ! | TGTTTAAGAGTATGTGTTGA+TGG | - | chr5.2:30554496-30554515 | MS.gene55219:CDS | 30.0% |
| !! | ACAGAGTTTTGTAAAATGGA+AGG | + | chr5.2:30556127-30556146 | None:intergenic | 30.0% |
| !! | ATGATTGTTCTGAAATCAGT+AGG | + | chr5.2:30555119-30555138 | None:intergenic | 30.0% |
| !! | GTTTTTGTATTTTGAACAGG+AGG | - | chr5.2:30556837-30556856 | MS.gene55219:CDS | 30.0% |
| !!! | GTTAGTTTTGTTTAGTCTGT+TGG | - | chr5.2:30556706-30556725 | MS.gene55219:intron | 30.0% |
| !!! | GTTGCTTTTGTTCTAAATTC+TGG | - | chr5.2:30556883-30556902 | MS.gene55219:CDS | 30.0% |
| AAAAAAATATGGGGGGAACA+AGG | - | chr5.2:30555465-30555484 | MS.gene55219:intron | 35.0% | |
| AACTTGTGAGATATGTCATC+AGG | - | chr5.2:30554914-30554933 | MS.gene55219:intron | 35.0% | |
| AGATAGTAGGCTAATTAGGT+TGG | + | chr5.2:30556557-30556576 | None:intergenic | 35.0% | |
| ATAGTGGTTTCTTCAGGAAT+AGG | + | chr5.2:30555745-30555764 | None:intergenic | 35.0% | |
| CAGAAGATAGTAGGCTAATT+AGG | + | chr5.2:30556561-30556580 | None:intergenic | 35.0% | |
| CATTTGTTCAGTGTTTGTGT+TGG | - | chr5.2:30556310-30556329 | MS.gene55219:intron | 35.0% | |
| CTGAATATTACATGCACAGA+AGG | + | chr5.2:30555686-30555705 | None:intergenic | 35.0% | |
| CTTACGGAGAAAAAATTGGA+TGG | + | chr5.2:30556468-30556487 | None:intergenic | 35.0% | |
| GCTACTTGACAAAAGGTTAT+AGG | - | chr5.2:30556196-30556215 | MS.gene55219:intron | 35.0% | |
| TAATTTAACACTGACACCTC+AGG | + | chr5.2:30554471-30554490 | None:intergenic | 35.0% | |
| TAGTGGTTTCTTCAGGAATA+GGG | + | chr5.2:30555744-30555763 | None:intergenic | 35.0% | |
| TATCATTCATAAGCTCGTCA+AGG | - | chr5.2:30554091-30554110 | MS.gene55219:CDS | 35.0% | |
| TCACATTGCAAAACCACTTT+AGG | - | chr5.2:30555309-30555328 | MS.gene55219:intron | 35.0% | |
| TCGTAGACTTGTGTGATTTA+TGG | - | chr5.2:30555333-30555352 | MS.gene55219:intron | 35.0% | |
| TGCAATAGAGCTCTTATATG+TGG | + | chr5.2:30555266-30555285 | None:intergenic | 35.0% | |
| TGTGTTGCATTAGTTAGCTA+TGG | - | chr5.2:30555863-30555882 | MS.gene55219:intron | 35.0% | |
| TGTTATGAACTTTCTTGCAG+AGG | - | chr5.2:30555925-30555944 | MS.gene55219:intron | 35.0% | |
| ! | ACCCATTTTCTACATTGATG+TGG | - | chr5.2:30554593-30554612 | MS.gene55219:intron | 35.0% |
| ! | ACCTTGCTATATTATGGCTT+GGG | - | chr5.2:30556616-30556635 | MS.gene55219:intron | 35.0% |
| ! | CTTCCTGATTTTTGAACTGT+TGG | - | chr5.2:30554824-30554843 | MS.gene55219:CDS | 35.0% |
| ! | TACCTTGCTATATTATGGCT+TGG | - | chr5.2:30556615-30556634 | MS.gene55219:intron | 35.0% |
| !! | ATATCATTCTAGGGCTTGAT+TGG | + | chr5.2:30554220-30554239 | None:intergenic | 35.0% |
| !! | ATTGTTCTGAAATCAGTAGG+CGG | + | chr5.2:30555116-30555135 | None:intergenic | 35.0% |
| !! | TAATGGCCGATATTTTTGTG+TGG | - | chr5.2:30554354-30554373 | MS.gene55219:intron | 35.0% |
| AAGCTGCATACAATGAGTTC+TGG | - | chr5.2:30556768-30556787 | MS.gene55219:CDS | 40.0% | |
| ACATGCACAGAAGGAAAAAG+AGG | + | chr5.2:30555677-30555696 | None:intergenic | 40.0% | |
| ACTCATCATATTCAGCATCC+AGG | + | chr5.2:30556029-30556048 | None:intergenic | 40.0% | |
| AGCTGCATACAATGAGTTCT+GGG | - | chr5.2:30556769-30556788 | MS.gene55219:CDS | 40.0% | |
| ATGCCAAAGACAAGGACAAT+TGG | + | chr5.2:30555290-30555309 | None:intergenic | 40.0% | |
| GAAAAGCTGCAGAAGATAGT+AGG | + | chr5.2:30556570-30556589 | None:intergenic | 40.0% | |
| GCAGTATACCCAGATTGATA+AGG | + | chr5.2:30555709-30555728 | None:intergenic | 40.0% | |
| GGAAGACAGTGTTTCCAATT+TGG | - | chr5.2:30553786-30553805 | MS.gene55219:intron | 40.0% | |
| GGAGTTGACACAAATGAGAT+CGG | - | chr5.2:30554264-30554283 | MS.gene55219:intron | 40.0% | |
| GTAGCATTTCCCACAACATA+AGG | + | chr5.2:30556181-30556200 | None:intergenic | 40.0% | |
| TATGAACTTTCTTGCAGAGG+AGG | - | chr5.2:30555928-30555947 | MS.gene55219:intron | 40.0% | |
| TATGTGGACACAACATCACA+TGG | + | chr5.2:30555250-30555269 | None:intergenic | 40.0% | |
| TGCATGCCGCAAAAGTAAAA+GGG | + | chr5.2:30556409-30556428 | None:intergenic | 40.0% | |
| TTACAATTAGAGCAGCTGAG+CGG | + | chr5.2:30556086-30556105 | None:intergenic | 40.0% | |
| ! | AACAAATGCAGTGAAGCATC+AGG | + | chr5.2:30556298-30556317 | None:intergenic | 40.0% |
| ! | ACAAATGCAGTGAAGCATCA+GGG | + | chr5.2:30556297-30556316 | None:intergenic | 40.0% |
| ! | AGTTGTCTTTTTGTCGGTGA+TGG | - | chr5.2:30554974-30554993 | MS.gene55219:intron | 40.0% |
| ! | GGGAAATGCTACTTGACAAA+AGG | - | chr5.2:30556189-30556208 | MS.gene55219:intron | 40.0% |
| ! | GTTGTCTTTTTGTCGGTGAT+GGG | - | chr5.2:30554975-30554994 | MS.gene55219:intron | 40.0% |
| ! | TATGCTGCTTCTAATGCTAG+TGG | - | chr5.2:30556048-30556067 | MS.gene55219:intron | 40.0% |
| !! | ATTCTAGGGCTTGATTGGAT+TGG | + | chr5.2:30554215-30554234 | None:intergenic | 40.0% |
| !! | GAACACTGACTTGTCTTTGT+CGG | + | chr5.2:30556664-30556683 | None:intergenic | 40.0% |
| !! | TGATGGCCCTTTTACTTTTG+CGG | - | chr5.2:30556400-30556419 | MS.gene55219:intron | 40.0% |
| ACAAGTCTACGAGCCTAAAG+TGG | + | chr5.2:30555325-30555344 | None:intergenic | 45.0% | |
| ACTTGTTCCTGCTGTACTGT+AGG | + | chr5.2:30556955-30556974 | None:intergenic | 45.0% | |
| AGATCCAGATGATCCAGCAT+CGG | + | chr5.2:30553692-30553711 | None:intergenic | 45.0% | |
| CACCAGCATCCTTATGTTGT+GGG | - | chr5.2:30556169-30556188 | MS.gene55219:intron | 45.0% | |
| CAGCCAATTGTCCTTGTCTT+TGG | - | chr5.2:30555284-30555303 | MS.gene55219:intron | 45.0% | |
| CATGCACTCTCTGTAACAGA+TGG | - | chr5.2:30556423-30556442 | MS.gene55219:intron | 45.0% | |
| CTTTCTCATTGCACCAATGC+TGG | + | chr5.2:30554887-30554906 | None:intergenic | 45.0% | |
| GCAATGTGATGCCAAAGACA+AGG | + | chr5.2:30555298-30555317 | None:intergenic | 45.0% | |
| GCCCAAGCCATAATATAGCA+AGG | + | chr5.2:30556620-30556639 | None:intergenic | 45.0% | |
| GCTCAGCTGCTCTAATTGTA+AGG | - | chr5.2:30556085-30556104 | MS.gene55219:intron | 45.0% | |
| GGGGGAACAAGGAAATTCTT+AGG | - | chr5.2:30555476-30555495 | MS.gene55219:intron | 45.0% | |
| GTCAAATGCAAGACGAGCAA+TGG | + | chr5.2:30554774-30554793 | None:intergenic | 45.0% | |
| GTCTATGTGTCAGTGTCATC+TGG | + | chr5.2:30554412-30554431 | None:intergenic | 45.0% | |
| GTGCATGCCGCAAAAGTAAA+AGG | + | chr5.2:30556410-30556429 | None:intergenic | 45.0% | |
| GTTGACACAAATGAGATCGG+TGG | - | chr5.2:30554267-30554286 | MS.gene55219:intron | 45.0% | |
| GTTGGTCAACAGGAACAACT+GGG | + | chr5.2:30553615-30553634 | None:intergenic | 45.0% | |
| TAAGACACCGGATACACCTT+CGG | - | chr5.2:30554445-30554464 | MS.gene55219:intron | 45.0% | |
| TATGCATACGATGCCAACGA+AGG | + | chr5.2:30555066-30555085 | None:intergenic | 45.0% | |
| TGTCTTCCTCCTGACAGATA+CGG | + | chr5.2:30553774-30553793 | None:intergenic | 45.0% | |
| TGTTGGTCAACAGGAACAAC+TGG | + | chr5.2:30553616-30553635 | None:intergenic | 45.0% | |
| TTCCCACAACATAAGGATGC+TGG | + | chr5.2:30556174-30556193 | None:intergenic | 45.0% | |
| ! | ACAGAAAGTGTGTCCAGCAT+TGG | - | chr5.2:30554871-30554890 | MS.gene55219:intron | 45.0% |
| ! | TGTTTAAGACCCTCCTTCGT+TGG | - | chr5.2:30555050-30555069 | MS.gene55219:intron | 45.0% |
| !! | CAGCATTGGTGCAATGAGAA+AGG | - | chr5.2:30554885-30554904 | MS.gene55219:intron | 45.0% |
| !! | CGTGCAGGCATCTAAGATTT+TGG | - | chr5.2:30555086-30555105 | MS.gene55219:intron | 45.0% |
| !! | TAGGCTAATTAGGTTGGCTC+CGG | + | chr5.2:30556551-30556570 | None:intergenic | 45.0% |
| !! | TTCTGAAATCAGTAGGCGGT+GGG | + | chr5.2:30555112-30555131 | None:intergenic | 45.0% |
| !! | CAAAATAATATAATATAATT+AGG | + | chr5.2:30555636-30555655 | None:intergenic | 5.0% |
| !!! | ATTTGTTTTTTTTTTTTATA+TGG | - | chr5.2:30553892-30553911 | MS.gene55219:CDS | 5.0% |
| AACTTTCTTGCAGAGGAGGC+TGG | - | chr5.2:30555932-30555951 | MS.gene55219:intron | 50.0% | |
| AATGATCGGAAGGAAGGTGG+TGG | + | chr5.2:30553645-30553664 | None:intergenic | 50.0% | |
| AGAGGAGGCTGGACATTATC+TGG | - | chr5.2:30555943-30555962 | MS.gene55219:intron | 50.0% | |
| AGAGGCAGAACGTCAATTCC+TGG | - | chr5.2:30556008-30556027 | MS.gene55219:intron | 50.0% | |
| AGATACGGCACTCAACCATC+TGG | + | chr5.2:30553759-30553778 | None:intergenic | 50.0% | |
| AGATGGCGATGGGGAATGAT+CGG | + | chr5.2:30553659-30553678 | None:intergenic | 50.0% | |
| ATGATCGGAAGGAAGGTGGT+GGG | + | chr5.2:30553644-30553663 | None:intergenic | 50.0% | |
| ATGGGGAATGATCGGAAGGA+AGG | + | chr5.2:30553651-30553670 | None:intergenic | 50.0% | |
| CACTCAACCATCTGGATCAG+TGG | + | chr5.2:30553751-30553770 | None:intergenic | 50.0% | |
| CATACGATGCCAACGAAGGA+GGG | + | chr5.2:30555062-30555081 | None:intergenic | 50.0% | |
| CTAAATTCTGGGCAGCGTAG+AGG | - | chr5.2:30556895-30556914 | MS.gene55219:CDS | 50.0% | |
| GATGCTGGATCATCTGGATC+TGG | - | chr5.2:30553691-30553710 | MS.gene55219:intron | 50.0% | |
| GCACCAGCATCCTTATGTTG+TGG | - | chr5.2:30556168-30556187 | MS.gene55219:intron | 50.0% | |
| GGGGAGTCACAACCTATACA+AGG | + | chr5.2:30554303-30554322 | None:intergenic | 50.0% | |
| GGTTCGCTCTGACCTTGTAT+AGG | - | chr5.2:30554288-30554307 | MS.gene55219:intron | 50.0% | |
| GTTTCTTCAGGAATAGGGCG+AGG | + | chr5.2:30555739-30555758 | None:intergenic | 50.0% | |
| TACCTTGAGACTACCGCTAC+AGG | + | chr5.2:30553824-30553843 | None:intergenic | 50.0% | |
| TCTGCAATCGCCAAAAGTCG+AGG | + | chr5.2:30555991-30556010 | None:intergenic | 50.0% | |
| TGGATCATCTGGATCTGGCT+CGG | - | chr5.2:30553696-30553715 | MS.gene55219:intron | 50.0% | |
| TGTATGATTGGGGGCCTGTT+TGG | - | chr5.2:30554010-30554029 | MS.gene55219:intron | 50.0% | |
| ! | CTTGCGTGATCCTCGACTTT+TGG | - | chr5.2:30555978-30555997 | MS.gene55219:intron | 50.0% |
| ! | CTTTTCTTGCTTCGAGCTGC+TGG | - | chr5.2:30556584-30556603 | MS.gene55219:intron | 50.0% |
| ! | GACATTATCTGGCTCACCCT+TGG | - | chr5.2:30555954-30555973 | MS.gene55219:intron | 50.0% |
| ! | TCGACTTTTGGCGATTGCAG+AGG | - | chr5.2:30555990-30556009 | MS.gene55219:intron | 50.0% |
| !! | CACTGACTTGTCTTTGTCGG+CGG | + | chr5.2:30556661-30556680 | None:intergenic | 50.0% |
| !! | GTTCTGAAATCAGTAGGCGG+TGG | + | chr5.2:30555113-30555132 | None:intergenic | 50.0% |
| AGACTACCGCTACAGGCACA+GGG | + | chr5.2:30553817-30553836 | None:intergenic | 55.0% | |
| CGAGGATCACGCAAGTCCAA+GGG | + | chr5.2:30555973-30555992 | None:intergenic | 55.0% | |
| CTACACTTCGCCATAGCACC+AGG | - | chr5.2:30556919-30556938 | MS.gene55219:CDS | 55.0% | |
| GAACAACTGGGTGGTCGAGT+TGG | + | chr5.2:30553603-30553622 | None:intergenic | 55.0% | |
| GATTGGGGGCCTGTTTGGAT+TGG | - | chr5.2:30554015-30554034 | MS.gene55219:intron | 55.0% | |
| GCATACGATGCCAACGAAGG+AGG | + | chr5.2:30555063-30555082 | None:intergenic | 55.0% | |
| GGCACAGGGAGTCTCCAAAT+TGG | + | chr5.2:30553803-30553822 | None:intergenic | 55.0% | |
| GGCATCGTATGCATACGTGC+AGG | - | chr5.2:30555071-30555090 | MS.gene55219:intron | 55.0% | |
| GGGAATGATCGGAAGGAAGG+TGG | + | chr5.2:30553648-30553667 | None:intergenic | 55.0% | |
| GGTCAACAGGAACAACTGGG+TGG | + | chr5.2:30553612-30553631 | None:intergenic | 55.0% | |
| TCCAGGACCTACAGTACAGC+AGG | - | chr5.2:30556945-30556964 | MS.gene55219:CDS | 55.0% | |
| TCCTGCTGTACTGTAGGTCC+TGG | + | chr5.2:30556949-30556968 | None:intergenic | 55.0% | |
| TCGAGGATCACGCAAGTCCA+AGG | + | chr5.2:30555974-30555993 | None:intergenic | 55.0% | |
| TCTTCAGGAATAGGGCGAGG+TGG | + | chr5.2:30555736-30555755 | None:intergenic | 55.0% | |
| TGCCTGTAGCGGTAGTCTCA+AGG | - | chr5.2:30553819-30553838 | MS.gene55219:intron | 55.0% | |
| TGCTGTACTGTAGGTCCTGG+AGG | + | chr5.2:30556946-30556965 | None:intergenic | 55.0% | |
| TGGGCAGGTTGTTGGTCAAC+AGG | + | chr5.2:30553625-30553644 | None:intergenic | 55.0% | |
| ! | GGTTGAGTGCCGTATCTGTC+AGG | - | chr5.2:30553762-30553781 | MS.gene55219:intron | 55.0% |
| ! | TCCAGATGATCCAGCATCGG+CGG | + | chr5.2:30553689-30553708 | None:intergenic | 55.0% |
| ! | TGAGTGCCGTATCTGTCAGG+AGG | - | chr5.2:30553765-30553784 | MS.gene55219:intron | 55.0% |
| !! | ATCATCTGGATCTGGCTCGG+CGG | - | chr5.2:30553699-30553718 | MS.gene55219:intron | 55.0% |
| ACACTGACACCTCAGGCCGA+AGG | + | chr5.2:30554464-30554483 | None:intergenic | 60.0% | |
| ACCGCCGATGCTGGATCATC+TGG | - | chr5.2:30553685-30553704 | MS.gene55219:intron | 60.0% | |
| ACTGTAGGTCCTGGAGGTCC+TGG | + | chr5.2:30556940-30556959 | None:intergenic | 60.0% | |
| AGGAATAGGGCGAGGTGGTG+GGG | + | chr5.2:30555731-30555750 | None:intergenic | 60.0% | |
| CAGGAATAGGGCGAGGTGGT+GGG | + | chr5.2:30555732-30555751 | None:intergenic | 60.0% | |
| GAGACTACCGCTACAGGCAC+AGG | + | chr5.2:30553818-30553837 | None:intergenic | 60.0% | |
| GAGACTCCCTGTGCCTGTAG+CGG | - | chr5.2:30553808-30553827 | MS.gene55219:intron | 60.0% | |
| GGAGGAGCCACTGATCCAGA+TGG | - | chr5.2:30553741-30553760 | MS.gene55219:intron | 60.0% | |
| GGCGATGGGGAATGATCGGA+AGG | + | chr5.2:30553655-30553674 | None:intergenic | 60.0% | |
| TCAGGAATAGGGCGAGGTGG+TGG | + | chr5.2:30555733-30555752 | None:intergenic | 60.0% | |
| ! | CCTCAGGCCGAAGGTGTATC+CGG | + | chr5.2:30554455-30554474 | None:intergenic | 60.0% |
| ! | GGATCGTGATGGCGATGAGG+AGG | - | chr5.2:30553723-30553742 | MS.gene55219:intron | 60.0% |
| ! | GGTGGATCGTGATGGCGATG+AGG | - | chr5.2:30553720-30553739 | MS.gene55219:intron | 60.0% |
| ! | TCCTGGAGGTCCTGGTGCTA+TGG | + | chr5.2:30556932-30556951 | None:intergenic | 60.0% |
| !! | AGATGATCCAGCATCGGCGG+TGG | + | chr5.2:30553686-30553705 | None:intergenic | 60.0% |
| !! | GAAGGTGGTGGGCAGGTTGT+TGG | + | chr5.2:30553633-30553652 | None:intergenic | 60.0% |
| CCGGATACACCTTCGGCCTG+AGG | - | chr5.2:30554452-30554471 | MS.gene55219:CDS | 65.0% | |
| CGGTGGTCGGAGATGGCGAT+GGG | + | chr5.2:30553669-30553688 | None:intergenic | 65.0% | |
| GCCATAGCACCAGGACCTCC+AGG | - | chr5.2:30556928-30556947 | MS.gene55219:CDS | 65.0% | |
| GGTGGTCGGAGATGGCGATG+GGG | + | chr5.2:30553668-30553687 | None:intergenic | 65.0% | |
| !! | ATCTGGATCTGGCTCGGCGG+TGG | - | chr5.2:30553702-30553721 | MS.gene55219:intron | 65.0% |
| !! | GATCCAGCATCGGCGGTGGT+CGG | + | chr5.2:30553682-30553701 | None:intergenic | 65.0% |
| !! | TCGGAAGGAAGGTGGTGGGC+AGG | + | chr5.2:30553640-30553659 | None:intergenic | 65.0% |
| GCGGTGGTCGGAGATGGCGA+TGG | + | chr5.2:30553670-30553689 | None:intergenic | 70.0% | |
| GGCTCGGCGGTGGATCGTGA+TGG | - | chr5.2:30553712-30553731 | MS.gene55219:intron | 70.0% | |
| TCTCCGACCACCGCCGATGC+TGG | - | chr5.2:30553676-30553695 | MS.gene55219:intron | 70.0% | |
| ! | GCATCGGCGGTGGTCGGAGA+TGG | + | chr5.2:30553676-30553695 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 30553571 | 30556978 | 30553571 | ID=MS.gene55219 |
| chr5.2 | mRNA | 30553571 | 30556978 | 30553571 | ID=MS.gene55219.t1;Parent=MS.gene55219 |
| chr5.2 | exon | 30556709 | 30556978 | 30556709 | ID=MS.gene55219.t1.exon1;Parent=MS.gene55219.t1 |
| chr5.2 | CDS | 30556709 | 30556978 | 30556709 | ID=cds.MS.gene55219.t1;Parent=MS.gene55219.t1 |
| chr5.2 | exon | 30555614 | 30555685 | 30555614 | ID=MS.gene55219.t1.exon2;Parent=MS.gene55219.t1 |
| chr5.2 | CDS | 30555614 | 30555685 | 30555614 | ID=cds.MS.gene55219.t1;Parent=MS.gene55219.t1 |
| chr5.2 | exon | 30554776 | 30554843 | 30554776 | ID=MS.gene55219.t1.exon3;Parent=MS.gene55219.t1 |
| chr5.2 | CDS | 30554776 | 30554843 | 30554776 | ID=cds.MS.gene55219.t1;Parent=MS.gene55219.t1 |
| chr5.2 | exon | 30554448 | 30554604 | 30554448 | ID=MS.gene55219.t1.exon4;Parent=MS.gene55219.t1 |
| chr5.2 | CDS | 30554448 | 30554604 | 30554448 | ID=cds.MS.gene55219.t1;Parent=MS.gene55219.t1 |
| chr5.2 | exon | 30554067 | 30554150 | 30554067 | ID=MS.gene55219.t1.exon5;Parent=MS.gene55219.t1 |
| chr5.2 | CDS | 30554067 | 30554150 | 30554067 | ID=cds.MS.gene55219.t1;Parent=MS.gene55219.t1 |
| chr5.2 | exon | 30553876 | 30553965 | 30553876 | ID=MS.gene55219.t1.exon6;Parent=MS.gene55219.t1 |
| chr5.2 | CDS | 30553876 | 30553965 | 30553876 | ID=cds.MS.gene55219.t1;Parent=MS.gene55219.t1 |
| chr5.2 | exon | 30553571 | 30553693 | 30553571 | ID=MS.gene55219.t1.exon7;Parent=MS.gene55219.t1 |
| chr5.2 | CDS | 30553571 | 30553693 | 30553571 | ID=cds.MS.gene55219.t1;Parent=MS.gene55219.t1 |
| Gene Sequence |
| Protein sequence |
