Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046471.t1 | XP_014494321.1 | 85.6 | 810 | 115 | 1 | 1 | 808 | 1 | 810 | 0.00E+00 | 1436.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046471.t1 | Q8L6Y1 | 72.7 | 807 | 205 | 4 | 6 | 808 | 1 | 796 | 0.0e+00 | 1230.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046471.t1 | A0A1S3TKN6 | 85.6 | 810 | 115 | 1 | 1 | 808 | 1 | 810 | 0.0e+00 | 1436.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene046471 | MS.gene056896 | PPI |
| MS.gene046471 | MS.gene06859 | PPI |
| MS.gene046471 | MS.gene050290 | PPI |
| MS.gene046471 | MS.gene050252 | PPI |
| MS.gene046471 | MS.gene007189 | PPI |
| MS.gene046471 | MS.gene81765 | PPI |
| MS.gene046471 | MS.gene06645 | PPI |
| MS.gene046471 | MS.gene034846 | PPI |
| MS.gene046471 | MS.gene057206 | PPI |
| MS.gene013534 | MS.gene046471 | PPI |
| MS.gene24706 | MS.gene046471 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046471.t1 | MTR_2g081180 | 79.503 | 805 | 160 | 2 | 6 | 808 | 1 | 802 | 0.0 | 1374 |
| MS.gene046471.t1 | MTR_2g081180 | 78.634 | 805 | 153 | 3 | 6 | 808 | 1 | 788 | 0.0 | 1349 |
| MS.gene046471.t1 | MTR_2g081180 | 77.764 | 805 | 156 | 3 | 6 | 808 | 1 | 784 | 0.0 | 1336 |
| MS.gene046471.t1 | MTR_2g081180 | 78.873 | 568 | 115 | 2 | 243 | 808 | 4 | 568 | 0.0 | 952 |
| MS.gene046471.t1 | MTR_2g081180 | 78.571 | 532 | 109 | 2 | 279 | 808 | 1 | 529 | 0.0 | 891 |
| MS.gene046471.t1 | MTR_8g464880 | 88.333 | 120 | 9 | 1 | 632 | 751 | 1 | 115 | 1.99e-64 | 211 |
| MS.gene046471.t1 | MTR_4g077475 | 63.235 | 68 | 25 | 0 | 743 | 810 | 64 | 131 | 5.92e-23 | 95.5 |
| MS.gene046471.t1 | MTR_4g077475 | 62.319 | 69 | 25 | 1 | 551 | 619 | 1 | 68 | 6.84e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046471.t1 | AT3G20630 | 72.739 | 807 | 205 | 4 | 6 | 808 | 1 | 796 | 0.0 | 1242 |
Find 181 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATCAAAATTTGTATTT+TGG | 0.104884 | 8.3:-45165776 | None:intergenic |
| TTGGCGCATGGTCTACTTTC+TGG | 0.199366 | 8.3:+45166937 | MS.gene046471:CDS |
| CTATGAGTTTCTTCATATTC+AGG | 0.242690 | 8.3:-45163665 | None:intergenic |
| AACACAGGATATCGACTTAT+TGG | 0.246392 | 8.3:+45174686 | MS.gene046471:intron |
| ATTTGTTGACAGGACAAAAT+TGG | 0.248332 | 8.3:+45166918 | MS.gene046471:intron |
| TCAGACACTGCATCCATTTC+CGG | 0.278760 | 8.3:+45173398 | MS.gene046471:CDS |
| GAACCATGGCCTTCAGAAAT+AGG | 0.283309 | 8.3:-45172808 | None:intergenic |
| GGCGTTGTTATTCCACCATC+TGG | 0.288338 | 8.3:+45164015 | MS.gene046471:CDS |
| AATAGTGTTGGTTTCTTAGA+AGG | 0.292223 | 8.3:-45162084 | None:intergenic |
| TTCTTAGAAGGCCTATCTTC+TGG | 0.304039 | 8.3:-45162072 | None:intergenic |
| ATGTTTCGTGTAGGTCTTGA+TGG | 0.327495 | 8.3:+45163623 | MS.gene046471:intron |
| CATAAAGCAGACAAAGAAAT+TGG | 0.327783 | 8.3:+45162047 | MS.gene046471:CDS |
| TCCAAATTTAGCAAAACATT+TGG | 0.328071 | 8.3:+45165088 | MS.gene046471:CDS |
| ATTACAGCTTTGAACATATT+CGG | 0.328753 | 8.3:-45167267 | None:intergenic |
| TGTTAATCCTCCCAAGGAAA+TGG | 0.328991 | 8.3:+45174814 | MS.gene046471:CDS |
| CAGGCCAGTGTCACCGGAAA+TGG | 0.339385 | 8.3:-45173411 | None:intergenic |
| GATAGAATTTCATGTTCATC+TGG | 0.348308 | 8.3:+45168215 | MS.gene046471:CDS |
| GTGATAAGAAAGACAATCTT+TGG | 0.354423 | 8.3:+45164055 | MS.gene046471:CDS |
| TGTCTCTCTACTTGTTTCCA+TGG | 0.356143 | 8.3:+45172576 | MS.gene046471:CDS |
| AAAATGCGATTGGTAGGTTC+AGG | 0.362949 | 8.3:-45161393 | None:intergenic |
| GATTGGTCAACATTGGAAAT+AGG | 0.374998 | 8.3:+45165856 | MS.gene046471:CDS |
| CCAAACTTGAAACTCCTTGC+AGG | 0.390469 | 8.3:-45168185 | None:intergenic |
| TGGCGCATGGTCTACTTTCT+GGG | 0.390969 | 8.3:+45166938 | MS.gene046471:CDS |
| ATGTGTAACACCAGGTAATC+AGG | 0.392442 | 8.3:-45169987 | None:intergenic |
| TGACTGATATCTATGATATC+AGG | 0.393855 | 8.3:-45171537 | None:intergenic |
| TGCTTCGTTCCAATCTCTCT+AGG | 0.399630 | 8.3:+45161361 | MS.gene046471:CDS |
| GGAAAGTTACATACAATAGA+AGG | 0.402363 | 8.3:+45168237 | MS.gene046471:CDS |
| CTCTGCTTTGAGTTTGTGAA+AGG | 0.405467 | 8.3:-45168417 | None:intergenic |
| CTTTCTTGATCGAGTTGAAC+GGG | 0.409811 | 8.3:+45168136 | MS.gene046471:CDS |
| GATTTGTTATGGAGGAAGGA+TGG | 0.414081 | 8.3:+45170015 | MS.gene046471:CDS |
| TGCCGAATAGATGAAAATTC+AGG | 0.414367 | 8.3:-45167303 | None:intergenic |
| ACACATGCGAAGATTTGTTA+TGG | 0.414720 | 8.3:+45170004 | MS.gene046471:CDS |
| TGGCACTATTACTGCTGATC+TGG | 0.415852 | 8.3:+45164194 | MS.gene046471:CDS |
| TTCTAAGAAACCAACACTAT+TGG | 0.417301 | 8.3:+45162086 | MS.gene046471:CDS |
| GTCTCTCTACTTGTTTCCAT+GGG | 0.420502 | 8.3:+45172577 | MS.gene046471:CDS |
| TGAGGCATCAGTCTCCAGTA+TGG | 0.422118 | 8.3:+45173364 | MS.gene046471:CDS |
| TTCTGGGAAATACTCTGTTC+CGG | 0.425141 | 8.3:+45166954 | MS.gene046471:CDS |
| TAAGGAGCAACTTGCAGCTT+GGG | 0.425340 | 8.3:+45163936 | MS.gene046471:CDS |
| ATACTCTGTTCCGGCATTCA+AGG | 0.426379 | 8.3:+45166963 | MS.gene046471:CDS |
| CCTGCAAGGAGTTTCAAGTT+TGG | 0.431104 | 8.3:+45168185 | MS.gene046471:CDS |
| CAAAATAATTTAGGTAAGGC+TGG | 0.434814 | 8.3:+45163876 | MS.gene046471:intron |
| GTTCCAATCTCTCTAGGGTT+CGG | 0.435089 | 8.3:+45161367 | MS.gene046471:CDS |
| TTGTTTGTTGCTTCATGCAA+TGG | 0.437604 | 8.3:-45168287 | None:intergenic |
| CAAATGCCTTCTCTAGACTT+TGG | 0.438288 | 8.3:-45166112 | None:intergenic |
| GTTGATCAGCTAATTACGTT+CGG | 0.445072 | 8.3:+45172862 | MS.gene046471:CDS |
| GACCTCATTTCCTGATTACC+TGG | 0.445780 | 8.3:+45169977 | MS.gene046471:CDS |
| GTTAATCCTCCCAAGGAAAT+GGG | 0.449545 | 8.3:+45174815 | MS.gene046471:CDS |
| ACTGATGGAATAATTCTTTG+TGG | 0.453336 | 8.3:+45164087 | MS.gene046471:CDS |
| CGAGTTGAACGGGCTAATGA+TGG | 0.453581 | 8.3:+45168146 | MS.gene046471:CDS |
| AGTTTATTCTGTAGGACTGC+AGG | 0.454873 | 8.3:+45169951 | MS.gene046471:intron |
| AGAAATTGGTTCCAGAAGAT+AGG | 0.456451 | 8.3:+45162061 | MS.gene046471:CDS |
| CTCCTTACGTTCAGCACCAT+CGG | 0.457531 | 8.3:-45163920 | None:intergenic |
| CTGATGGAATAATTCTTTGT+GGG | 0.458585 | 8.3:+45164088 | MS.gene046471:CDS |
| GATCCGAACCCTAGAGAGAT+TGG | 0.459812 | 8.3:-45161370 | None:intergenic |
| TGTTTGTTGCTTCATGCAAT+GGG | 0.461560 | 8.3:-45168286 | None:intergenic |
| ATCAGGCAGGCCAGTGTCAC+CGG | 0.462555 | 8.3:-45173417 | None:intergenic |
| ATACAGATAACCCATTTCCT+TGG | 0.463944 | 8.3:-45174825 | None:intergenic |
| TACAGATAACCCATTTCCTT+GGG | 0.464634 | 8.3:-45174824 | None:intergenic |
| AACTTACTCCCTCCTCCATC+AGG | 0.464709 | 8.3:-45173434 | None:intergenic |
| TGGACCTGGTTATACAGGAT+TGG | 0.474300 | 8.3:+45165839 | MS.gene046471:CDS |
| TGCTTTATGCGCAAATAGAT+CGG | 0.477786 | 8.3:-45162033 | None:intergenic |
| CAAGCTTCTAAAGGCACCCT+TGG | 0.478820 | 8.3:-45168563 | None:intergenic |
| ACTGGCCTGCCTGATGGAGG+AGG | 0.483489 | 8.3:+45173425 | MS.gene046471:CDS |
| GACTGGATGCGGCATTGACT+TGG | 0.484260 | 8.3:+45172650 | MS.gene046471:CDS |
| AGGTCTACAGTTGGATCAGC+AGG | 0.486223 | 8.3:-45166143 | None:intergenic |
| AGATGAAAATTCAGGATGGC+TGG | 0.486516 | 8.3:-45167295 | None:intergenic |
| ATTAGAAACAAGAAGGAATA+CGG | 0.486941 | 8.3:+45167244 | MS.gene046471:intron |
| ACACTTACAACTGCATATTC+AGG | 0.488171 | 8.3:-45166163 | None:intergenic |
| GAGCAGTTAGGTACCTTCTC+TGG | 0.489496 | 8.3:-45163740 | None:intergenic |
| ATTTGTTATGGAGGAAGGAT+GGG | 0.493649 | 8.3:+45170016 | MS.gene046471:CDS |
| TTTGCAAGGCAAGCTTCTAA+AGG | 0.494194 | 8.3:-45168572 | None:intergenic |
| GGTGACACTGGCCTGCCTGA+TGG | 0.494563 | 8.3:+45173419 | MS.gene046471:CDS |
| ACATTGAGAAAGCGACAGAT+TGG | 0.495965 | 8.3:+45173327 | MS.gene046471:CDS |
| ATTGACATTCCTATTTCTGA+AGG | 0.497250 | 8.3:+45172799 | MS.gene046471:CDS |
| TTGGAAAGGATTACGTTGGT+TGG | 0.497391 | 8.3:+45161989 | MS.gene046471:CDS |
| CGAAGATTTGTTATGGAGGA+AGG | 0.499090 | 8.3:+45170011 | MS.gene046471:CDS |
| TCCAAGACACTATCATCCTC+TGG | 0.503510 | 8.3:-45165065 | None:intergenic |
| ATCAAATGTTGGACTGGATG+CGG | 0.504815 | 8.3:+45172639 | MS.gene046471:CDS |
| GCTATAAATACATCAAATGT+TGG | 0.506211 | 8.3:+45172628 | MS.gene046471:CDS |
| TGCATATTCAGGTCTACAGT+TGG | 0.508855 | 8.3:-45166152 | None:intergenic |
| TATGCGCAGCAAAGGTCGCC+AGG | 0.508888 | 8.3:+45171560 | MS.gene046471:CDS |
| TAAAAGTCGTGTATATCCTC+TGG | 0.510008 | 8.3:-45168605 | None:intergenic |
| CACCCTCTTGCTGTAAAGCT+TGG | 0.510174 | 8.3:+45164174 | MS.gene046471:CDS |
| CAGTTTCACAAGGATGATCC+AGG | 0.510435 | 8.3:+45172676 | MS.gene046471:CDS |
| AAATACATCAAATGTTGGAC+TGG | 0.510805 | 8.3:+45172633 | MS.gene046471:CDS |
| TGGAATCGAATTCAAGAAAG+TGG | 0.512721 | 8.3:+45165795 | MS.gene046471:CDS |
| TGTTTCGTGTAGGTCTTGAT+GGG | 0.514346 | 8.3:+45163624 | MS.gene046471:intron |
| TCCAGAGGATGATAGTGTCT+TGG | 0.518327 | 8.3:+45165064 | MS.gene046471:CDS |
| TATACAGGATTGGTCAACAT+TGG | 0.520849 | 8.3:+45165849 | MS.gene046471:CDS |
| AGCCGATGGTGCTGAACGTA+AGG | 0.522162 | 8.3:+45163918 | MS.gene046471:CDS |
| TAGAGAGACAATTTCTTCAT+CGG | 0.522193 | 8.3:-45172563 | None:intergenic |
| GCTTCGTTCCAATCTCTCTA+GGG | 0.522341 | 8.3:+45161362 | MS.gene046471:CDS |
| TTTCAATGACAACAAGGTTG+GGG | 0.523089 | 8.3:+45174787 | MS.gene046471:CDS |
| GGTTGGAATTATGACAAGAC+TGG | 0.523865 | 8.3:+45162006 | MS.gene046471:CDS |
| GCGATGAGATTGTGCGTCCA+AGG | 0.524499 | 8.3:+45168546 | MS.gene046471:CDS |
| GATGAATTTCAGAGGTCAGA+AGG | 0.527016 | 8.3:+45161931 | MS.gene046471:intron |
| TGATGTGACAGTATCCATAC+TGG | 0.528032 | 8.3:-45173378 | None:intergenic |
| GACGATGATAACCGAAGCGT+TGG | 0.528314 | 8.3:+45161335 | None:intergenic |
| CGCAGCAAAGGTCGCCAGGA+TGG | 0.529367 | 8.3:+45171564 | MS.gene046471:CDS |
| CAACAAGATCATTCATATCA+CGG | 0.532315 | 8.3:+45165997 | MS.gene046471:CDS |
| TACTCCCTCCTCCATCAGGC+AGG | 0.532645 | 8.3:-45173430 | None:intergenic |
| ATTCCTATTTCTGAAGGCCA+TGG | 0.532648 | 8.3:+45172805 | MS.gene046471:CDS |
| CTTTGGCTAAATCTAACTGA+TGG | 0.536278 | 8.3:+45164072 | MS.gene046471:CDS |
| ACTTTCTTGATCGAGTTGAA+CGG | 0.542582 | 8.3:+45168135 | MS.gene046471:CDS |
| GACACTGGCCTGCCTGATGG+AGG | 0.543208 | 8.3:+45173422 | MS.gene046471:CDS |
| GACATACATACCTTGAATGC+CGG | 0.545190 | 8.3:-45166973 | None:intergenic |
| TTCTCTGGCAATTCGACAGA+AGG | 0.546298 | 8.3:-45163725 | None:intergenic |
| AAATGCGATTGGTAGGTTCA+GGG | 0.549022 | 8.3:-45161392 | None:intergenic |
| GCATCCATTTCCGGTGACAC+TGG | 0.549195 | 8.3:+45173407 | MS.gene046471:CDS |
| GTAAGGAGCAACTTGCAGCT+TGG | 0.549619 | 8.3:+45163935 | MS.gene046471:CDS |
| ACGAAGCAAATCCAACGCTT+CGG | 0.550712 | 8.3:-45161346 | None:intergenic |
| AGAGAAACTTGCAGAAGGAA+AGG | 0.551882 | 8.3:+45168436 | MS.gene046471:CDS |
| ATAGAATTTCATGTTCATCT+GGG | 0.555484 | 8.3:+45168216 | MS.gene046471:CDS |
| TTCGTGCTTGAAAATGCGAT+TGG | 0.555490 | 8.3:-45161403 | None:intergenic |
| TTCAAACATTAGAAACAAGA+AGG | 0.556304 | 8.3:+45167237 | MS.gene046471:intron |
| ATTGTCTTTCTTATCACACT+TGG | 0.558797 | 8.3:-45164049 | None:intergenic |
| GTAGCAGTTCTTCACCATCC+TGG | 0.558986 | 8.3:-45171578 | None:intergenic |
| ATCAGTCATATGCGCAGCAA+AGG | 0.565733 | 8.3:+45171552 | MS.gene046471:CDS |
| CGATGAGATTGTGCGTCCAA+GGG | 0.570277 | 8.3:+45168547 | MS.gene046471:CDS |
| AGATAACCCATTTCCTTGGG+AGG | 0.572510 | 8.3:-45174821 | None:intergenic |
| ACTGCTGATCTGGAAGCAGC+AGG | 0.573313 | 8.3:+45164204 | MS.gene046471:CDS |
| GCGTTGTTATTCCACCATCT+GGG | 0.573942 | 8.3:+45164016 | MS.gene046471:CDS |
| TTCTGTCGAATTGCCAGAGA+AGG | 0.575999 | 8.3:+45163727 | MS.gene046471:CDS |
| GCACATTTCCACCCAGATGG+TGG | 0.576065 | 8.3:-45164027 | None:intergenic |
| TCTTACAGCGGTCGTAGTTG+AGG | 0.577916 | 8.3:-45167099 | None:intergenic |
| GGCTTCTGTTAATCCTCCCA+AGG | 0.578435 | 8.3:+45174808 | MS.gene046471:CDS |
| CTGGCCTGCCTGATGGAGGA+GGG | 0.578722 | 8.3:+45173426 | MS.gene046471:CDS |
| ACAATTTCTTCATCGGCCGA+AGG | 0.581348 | 8.3:-45172556 | None:intergenic |
| CACCAGGTAATCAGGAAATG+AGG | 0.581945 | 8.3:-45169979 | None:intergenic |
| GTGAAGAACTGCTACCTGAT+GGG | 0.584775 | 8.3:+45171586 | MS.gene046471:CDS |
| ATGGAATAATTCTTTGTGGG+AGG | 0.586410 | 8.3:+45164091 | MS.gene046471:CDS |
| TTATAGCAGCTTTCTGACAA+CGG | 0.586766 | 8.3:-45172612 | None:intergenic |
| GTTTCGTGTAGGTCTTGATG+GGG | 0.588680 | 8.3:+45163625 | MS.gene046471:intron |
| ATACTGGAGACTGATGCCTC+AGG | 0.590591 | 8.3:-45173362 | None:intergenic |
| GTGCCAAGCTTTACAGCAAG+AGG | 0.591223 | 8.3:-45164177 | None:intergenic |
| GAGTTGAACGGGCTAATGAT+GGG | 0.592153 | 8.3:+45168147 | MS.gene046471:CDS |
| GGTGAAGAACTGCTACCTGA+TGG | 0.592381 | 8.3:+45171585 | MS.gene046471:CDS |
| TGAAGAACTGCTACCTGATG+GGG | 0.593296 | 8.3:+45171587 | MS.gene046471:CDS |
| TGCTTGAAAATGCGATTGGT+AGG | 0.595745 | 8.3:-45161399 | None:intergenic |
| TTGGCACATTTCCACCCAGA+TGG | 0.596655 | 8.3:-45164030 | None:intergenic |
| AATTTCAGAGGTCAGAAGGT+GGG | 0.598431 | 8.3:+45161935 | MS.gene046471:intron |
| GTTATCTGTATTTCTTCGAG+AGG | 0.598528 | 8.3:+45174837 | MS.gene046471:CDS |
| GACACTATCATCCTCTGGAT+AGG | 0.601245 | 8.3:-45165060 | None:intergenic |
| TTGGTCAAGCTCTCTTTCAG+CGG | 0.603928 | 8.3:-45165757 | None:intergenic |
| CAACTCGATCAAGAAAGTGT+AGG | 0.609529 | 8.3:-45168130 | None:intergenic |
| ATACCTACAGCCAATAGTGT+TGG | 0.609740 | 8.3:-45162096 | None:intergenic |
| CTGTTGTAAACTCACTGCAT+AGG | 0.613715 | 8.3:-45163983 | None:intergenic |
| TTGCGTTTCTTACGACACTC+CGG | 0.616701 | 8.3:+45161428 | MS.gene046471:CDS |
| TTGCATGAAGCAACAAACAA+AGG | 0.616933 | 8.3:+45168290 | MS.gene046471:CDS |
| GACTTGGTTACAGTTTCACA+AGG | 0.617561 | 8.3:+45172666 | MS.gene046471:CDS |
| GAATTTCAGAGGTCAGAAGG+TGG | 0.618238 | 8.3:+45161934 | MS.gene046471:intron |
| ACGGAGATGATCAAAGCCCA+TGG | 0.619505 | 8.3:-45172593 | None:intergenic |
| GACAGGACAAAATTGGCGCA+TGG | 0.621055 | 8.3:+45166925 | MS.gene046471:intron |
| CTTGAACCAAAGTCTAGAGA+AGG | 0.624274 | 8.3:+45166106 | MS.gene046471:CDS |
| GATGCAATCTTACTAGCCGA+TGG | 0.625399 | 8.3:+45163904 | MS.gene046471:CDS |
| TTGTTATTCCACCATCTGGG+TGG | 0.625656 | 8.3:+45164019 | MS.gene046471:CDS |
| CTGGAGCAGAGAAGTTTGCA+AGG | 0.626937 | 8.3:-45168586 | None:intergenic |
| ATTGGAGTTGTTAGCCACAG+TGG | 0.628087 | 8.3:+45174704 | MS.gene046471:CDS |
| AAACTGAGGTGGATCCTGCA+AGG | 0.631197 | 8.3:+45168171 | MS.gene046471:CDS |
| TTGTCAAAGCTTCAGAACCA+TGG | 0.631887 | 8.3:-45172822 | None:intergenic |
| TGCAAACTTCTCTGCTCCAG+AGG | 0.633061 | 8.3:+45168589 | MS.gene046471:CDS |
| CATGCGAAGATTTGTTATGG+AGG | 0.633316 | 8.3:+45170007 | MS.gene046471:CDS |
| AAACCAACACTATTGGCTGT+AGG | 0.633486 | 8.3:+45162093 | MS.gene046471:CDS |
| TTGACCAATCCTGTATAACC+AGG | 0.634222 | 8.3:-45165843 | None:intergenic |
| TCTCTGGCAATTCGACAGAA+GGG | 0.635011 | 8.3:-45163724 | None:intergenic |
| AAAGCAGAGAAACTTGCAGA+AGG | 0.639104 | 8.3:+45168431 | MS.gene046471:CDS |
| GGAGCAACTTGCAGCTTGGG+CGG | 0.640605 | 8.3:+45163939 | MS.gene046471:CDS |
| TTGGATATTTAGCAATCCTG+AGG | 0.649412 | 8.3:+45173346 | MS.gene046471:CDS |
| TTTCGTGTAGGTCTTGATGG+GGG | 0.655544 | 8.3:+45163626 | MS.gene046471:intron |
| AATGAAAGAGACACATACTC+AGG | 0.656070 | 8.3:-45163701 | None:intergenic |
| AGTTTACAACAGATTGACAA+TGG | 0.656074 | 8.3:+45163994 | MS.gene046471:CDS |
| TGCCAAGCTTTACAGCAAGA+GGG | 0.664548 | 8.3:-45164176 | None:intergenic |
| ATCTTCGCATGTGTAACACC+AGG | 0.671341 | 8.3:-45169995 | None:intergenic |
| TAATGATGGGAAAACTGAGG+TGG | 0.674936 | 8.3:+45168160 | MS.gene046471:CDS |
| AGTGGAACCTCTACGCTGTG+TGG | 0.697486 | 8.3:+45174722 | MS.gene046471:CDS |
| GAATAGATGAAAATTCAGGA+TGG | 0.699038 | 8.3:-45167299 | None:intergenic |
| GAAGAACTGCTACCTGATGG+GGG | 0.708896 | 8.3:+45171588 | MS.gene046471:CDS |
| AGACGTTTACTCCTATCCAG+AGG | 0.709737 | 8.3:+45165049 | MS.gene046471:intron |
| GTAGTGACCACACAGCGTAG+AGG | 0.713372 | 8.3:-45174729 | None:intergenic |
| GGCTAATGATGGGAAAACTG+AGG | 0.728755 | 8.3:+45168157 | MS.gene046471:CDS |
| ACAGCGTAGAGGTTCCACTG+TGG | 0.816807 | 8.3:-45174718 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 45161339 | 45174871 | 45161339 | ID=MS.gene046471 |
| chr8.3 | mRNA | 45161339 | 45174871 | 45161339 | ID=MS.gene046471.t1;Parent=MS.gene046471 |
| chr8.3 | exon | 45161339 | 45161449 | 45161339 | ID=MS.gene046471.t1.exon1;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45161339 | 45161449 | 45161339 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45161943 | 45162114 | 45161943 | ID=MS.gene046471.t1.exon2;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45161943 | 45162114 | 45161943 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45163636 | 45163748 | 45163636 | ID=MS.gene046471.t1.exon3;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45163636 | 45163748 | 45163636 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45163889 | 45164225 | 45163889 | ID=MS.gene046471.t1.exon4;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45163889 | 45164225 | 45163889 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45165051 | 45165145 | 45165051 | ID=MS.gene046471.t1.exon5;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45165051 | 45165145 | 45165051 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45165744 | 45165877 | 45165744 | ID=MS.gene046471.t1.exon6;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45165744 | 45165877 | 45165744 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45165962 | 45166018 | 45165962 | ID=MS.gene046471.t1.exon7;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45165962 | 45166018 | 45165962 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45166100 | 45166177 | 45166100 | ID=MS.gene046471.t1.exon8;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45166100 | 45166177 | 45166100 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45166930 | 45166984 | 45166930 | ID=MS.gene046471.t1.exon9;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45166930 | 45166984 | 45166930 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45167074 | 45167115 | 45167074 | ID=MS.gene046471.t1.exon10;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45167074 | 45167115 | 45167074 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45167249 | 45167329 | 45167249 | ID=MS.gene046471.t1.exon11;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45167249 | 45167329 | 45167249 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45168113 | 45168311 | 45168113 | ID=MS.gene046471.t1.exon12;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45168113 | 45168311 | 45168113 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45168405 | 45168462 | 45168405 | ID=MS.gene046471.t1.exon13;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45168405 | 45168462 | 45168405 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45168541 | 45168663 | 45168541 | ID=MS.gene046471.t1.exon14;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45168541 | 45168663 | 45168541 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45169965 | 45170053 | 45169965 | ID=MS.gene046471.t1.exon15;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45169965 | 45170053 | 45169965 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45171520 | 45171609 | 45171520 | ID=MS.gene046471.t1.exon16;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45171520 | 45171609 | 45171520 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45172536 | 45172697 | 45172536 | ID=MS.gene046471.t1.exon17;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45172536 | 45172697 | 45172536 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45172797 | 45172924 | 45172797 | ID=MS.gene046471.t1.exon18;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45172797 | 45172924 | 45172797 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45173320 | 45173449 | 45173320 | ID=MS.gene046471.t1.exon19;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45173320 | 45173449 | 45173320 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| chr8.3 | exon | 45174693 | 45174871 | 45174693 | ID=MS.gene046471.t1.exon20;Parent=MS.gene046471.t1 |
| chr8.3 | CDS | 45174693 | 45174871 | 45174693 | ID=cds.MS.gene046471.t1;Parent=MS.gene046471.t1 |
| Gene Sequence |
| Protein sequence |
