AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050290.t1 MTR_7g105080 100.000 128 0 0 1 128 1 128 1.29e-92 263
MS.gene050290.t1 MTR_3g092130 100.000 128 0 0 1 128 1 128 1.29e-92 263
MS.gene050290.t1 MTR_1g059690 100.000 128 0 0 1 128 1 128 1.29e-92 263
MS.gene050290.t1 MTR_3g092130 98.361 122 2 0 1 122 1 122 2.83e-87 250
MS.gene050290.t1 MTR_5g092700 100.000 76 0 0 1 76 1 76 9.38e-50 155
MS.gene050290.t1 MTR_5g092700 62.162 74 28 0 3 76 79 152 1.84e-26 96.7
MS.gene050290.t1 MTR_4g073580 100.000 76 0 0 1 76 1 76 9.38e-50 155
MS.gene050290.t1 MTR_4g073580 62.162 74 28 0 3 76 79 152 1.84e-26 96.7
MS.gene050290.t1 MTR_8g088060 100.000 76 0 0 1 76 1 76 1.45e-49 155
MS.gene050290.t1 MTR_5g033960 100.000 76 0 0 1 76 1 76 1.55e-49 155
MS.gene050290.t1 MTR_4g073580 100.000 76 0 0 1 76 1 76 3.56e-49 155
MS.gene050290.t1 MTR_4g073580 44.231 104 28 1 3 76 79 182 6.31e-20 80.9
MS.gene050290.t1 MTR_4g088485 98.701 77 1 0 1 77 1 77 4.21e-49 156
MS.gene050290.t1 MTR_4g088485 98.701 77 1 0 1 77 138 214 5.53e-49 155
MS.gene050290.t1 MTR_4g088485 79.221 77 1 1 1 77 77 138 3.49e-34 118
MS.gene050290.t1 MTR_7g116360 98.701 77 1 0 1 77 1 77 4.74e-49 156
MS.gene050290.t1 MTR_7g116360 98.701 77 1 0 1 77 77 153 4.74e-49 156
MS.gene050290.t1 MTR_7g116360 98.701 77 1 0 1 77 153 229 6.35e-49 156
MS.gene050290.t1 MTR_1g066390 98.701 77 1 0 1 77 1 77 5.54e-49 156
MS.gene050290.t1 MTR_1g066390 98.701 77 1 0 1 77 77 153 5.54e-49 156
MS.gene050290.t1 MTR_1g066390 100.000 76 0 0 1 76 153 228 8.47e-49 156
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 1 77 1.27e-48 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 77 153 1.27e-48 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 153 229 1.27e-48 157
MS.gene050290.t1 MTR_4g080920 97.403 77 2 0 1 77 77 153 1.39e-48 155
MS.gene050290.t1 MTR_4g080920 97.403 77 2 0 1 77 1 77 2.56e-48 154
MS.gene050290.t1 MTR_4g080920 69.737 76 23 0 1 76 153 228 5.76e-30 107
MS.gene050290.t1 MTR_6g061930 98.701 77 1 0 1 77 1 77 2.73e-48 156
MS.gene050290.t1 MTR_6g061930 98.701 77 1 0 1 77 77 153 2.73e-48 156
MS.gene050290.t1 MTR_6g061930 98.701 77 1 0 1 77 214 290 3.61e-48 156
MS.gene050290.t1 MTR_6g061930 76.623 77 3 1 1 77 153 214 1.26e-31 113
MS.gene050290.t1 MTR_7g116360 98.701 77 1 0 1 77 49 125 3.06e-48 156
MS.gene050290.t1 MTR_7g116360 98.701 77 1 0 1 77 125 201 3.06e-48 156
MS.gene050290.t1 MTR_7g116360 98.701 77 1 0 1 77 201 277 3.97e-48 155
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 1 77 3.19e-48 157
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 77 153 3.19e-48 157
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 153 229 3.19e-48 157
MS.gene050290.t1 MTR_4g081010 100.000 76 0 0 1 76 229 304 4.81e-48 156
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 1 77 4.89e-48 155
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 77 153 4.89e-48 155
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 153 229 4.89e-48 155
MS.gene050290.t1 MTR_8g081020 98.701 77 1 0 1 77 1 77 1.76e-47 157
MS.gene050290.t1 MTR_8g081020 98.701 77 1 0 1 77 77 153 1.76e-47 157
MS.gene050290.t1 MTR_8g081020 98.701 77 1 0 1 77 153 229 1.76e-47 157
MS.gene050290.t1 MTR_8g081020 98.701 77 1 0 1 77 229 305 1.76e-47 157
MS.gene050290.t1 MTR_8g081020 100.000 76 0 0 1 76 305 380 2.65e-47 156
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 1 77 1.78e-47 157
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 77 153 1.78e-47 157
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 153 229 1.78e-47 157
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 229 305 1.78e-47 157
MS.gene050290.t1 MTR_4g081010 100.000 76 0 0 1 76 305 380 2.68e-47 156
MS.gene050290.t1 MTR_4g080797 98.701 77 1 0 1 77 1 77 1.82e-47 157
MS.gene050290.t1 MTR_4g080797 98.701 77 1 0 1 77 77 153 1.82e-47 157
MS.gene050290.t1 MTR_4g080797 98.701 77 1 0 1 77 153 229 1.82e-47 157
MS.gene050290.t1 MTR_4g080797 98.701 77 1 0 1 77 229 305 1.82e-47 157
MS.gene050290.t1 MTR_4g080797 98.701 77 1 0 1 77 305 381 2.46e-47 156
MS.gene050290.t1 MTR_4g091580 98.701 77 1 0 1 77 1 77 1.82e-47 157
MS.gene050290.t1 MTR_4g091580 98.701 77 1 0 1 77 77 153 1.82e-47 157
MS.gene050290.t1 MTR_4g091580 98.701 77 1 0 1 77 153 229 1.82e-47 157
MS.gene050290.t1 MTR_4g091580 98.701 77 1 0 1 77 305 381 2.46e-47 156
MS.gene050290.t1 MTR_4g091580 97.403 77 2 0 1 77 229 305 5.42e-47 155
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 1 77 1.82e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 77 153 1.82e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 153 229 1.82e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 229 305 1.82e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 305 381 2.46e-47 156
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 1 77 7.63e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 77 153 7.63e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 153 229 7.63e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 229 305 7.63e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 305 381 7.63e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 381 457 1.03e-46 156
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 1 77 7.63e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 77 153 7.63e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 153 229 7.63e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 229 305 7.63e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 305 381 7.63e-47 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 381 457 1.03e-46 156
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 1 77 2.44e-46 157
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 77 153 2.44e-46 157
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 153 229 2.44e-46 157
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 229 305 2.44e-46 157
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 305 381 2.44e-46 157
MS.gene050290.t1 MTR_4g081010 98.701 77 1 0 1 77 381 457 2.44e-46 157
MS.gene050290.t1 MTR_4g081010 100.000 76 0 0 1 76 457 532 3.63e-46 156
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 1 77 2.52e-46 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 77 153 2.52e-46 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 153 229 2.52e-46 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 229 305 2.52e-46 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 305 381 2.52e-46 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 381 457 2.52e-46 157
MS.gene050290.t1 MTR_8g018230 98.701 77 1 0 1 77 457 533 3.37e-46 156
MS.gene050290.t1 MTR_4g091580 98.701 77 1 0 1 77 1 77 2.65e-46 157
MS.gene050290.t1 MTR_4g091580 98.701 77 1 0 1 77 77 153 2.65e-46 157
MS.gene050290.t1 MTR_4g091580 98.701 77 1 0 1 77 153 229 2.65e-46 157
MS.gene050290.t1 MTR_4g091580 98.701 77 1 0 1 77 229 305 2.65e-46 157
MS.gene050290.t1 MTR_4g091580 98.701 77 1 0 1 77 381 457 2.65e-46 157
MS.gene050290.t1 MTR_4g091580 98.701 77 1 0 1 77 457 533 3.55e-46 156
MS.gene050290.t1 MTR_4g091580 96.104 77 3 0 1 77 305 381 1.00e-44 152
MS.gene050290.t1 MTR_8g479250 96.104 77 3 0 1 77 141 217 1.09e-45 150
MS.gene050290.t1 MTR_8g479250 76.389 72 6 1 1 72 217 277 6.83e-27 101
MS.gene050290.t1 MTR_8g479250 100.000 41 0 0 1 41 1 41 1.21e-20 85.1
MS.gene050290.t1 MTR_8g479250 91.429 35 3 0 43 77 107 141 1.11e-14 68.9
MS.gene050290.t1 MTR_4g088495 98.701 77 1 0 1 77 77 153 2.16e-45 157
MS.gene050290.t1 MTR_4g088495 98.701 77 1 0 1 77 153 229 2.16e-45 157
MS.gene050290.t1 MTR_4g088495 98.701 77 1 0 1 77 229 305 2.16e-45 157
MS.gene050290.t1 MTR_4g088495 98.701 77 1 0 1 77 305 381 2.16e-45 157
MS.gene050290.t1 MTR_4g088495 98.701 77 1 0 1 77 381 457 2.16e-45 157
MS.gene050290.t1 MTR_4g088495 98.701 77 1 0 1 77 457 533 2.16e-45 157
MS.gene050290.t1 MTR_4g088495 98.701 77 1 0 1 77 533 609 2.16e-45 157
MS.gene050290.t1 MTR_4g088495 98.701 77 1 0 1 77 609 685 2.16e-45 157
MS.gene050290.t1 MTR_4g088495 98.701 77 1 0 1 77 685 761 2.16e-45 157
MS.gene050290.t1 MTR_4g088495 98.701 77 1 0 1 77 761 837 2.88e-45 156
MS.gene050290.t1 MTR_4g088495 97.403 77 2 0 1 77 1 77 4.96e-44 153
MS.gene050290.t1 MTR_1g046640 71.053 76 22 0 1 76 240 315 3.01e-28 105
MS.gene050290.t1 MTR_5g076810 68.831 77 23 1 1 76 194 270 1.09e-27 103
MS.gene050290.t1 MTR_5g076660 69.863 73 22 0 1 73 266 338 8.62e-27 102
MS.gene050290.t1 MTR_5g067400 68.421 76 24 0 1 76 241 316 1.74e-25 98.2
MS.gene050290.t1 MTR_5g061310 60.000 75 30 0 1 75 2 76 4.97e-25 90.9
MS.gene050290.t1 MTR_5g076370 64.384 73 26 0 1 73 267 339 3.83e-23 92.4
MS.gene050290.t1 MTR_2g038430 61.333 75 29 0 1 75 268 342 5.57e-23 92.0
MS.gene050290.t1 MTR_5g076505 61.333 75 29 0 1 75 240 314 8.04e-23 90.9
MS.gene050290.t1 MTR_1g046650 57.895 76 32 0 1 76 171 246 3.44e-22 88.2
MS.gene050290.t1 MTR_1g046650 57.895 76 32 0 1 76 240 315 4.89e-22 89.0
MS.gene050290.t1 MTR_5g076720 65.333 75 26 0 1 75 315 389 6.25e-22 89.4
MS.gene050290.t1 MTR_1g046650 57.895 76 32 0 1 76 240 315 6.95e-22 88.6
MS.gene050290.t1 MTR_1g046650 57.895 76 32 0 1 76 271 346 9.51e-22 88.6
MS.gene050290.t1 MTR_5g076740 59.211 76 30 1 1 75 86 161 1.13e-21 84.7
MS.gene050290.t1 MTR_2g038420 60.000 75 30 0 1 75 260 334 1.35e-21 88.2
MS.gene050290.t1 MTR_7g094390 58.667 75 31 0 1 75 402 476 8.93e-21 86.7
MS.gene050290.t1 MTR_5g076520 57.333 75 31 1 1 74 244 318 3.43e-19 81.3
MS.gene050290.t1 MTR_7g024290 60.526 76 29 1 1 75 241 316 8.99e-19 80.1
MS.gene050290.t1 MTR_4g009980 55.224 67 30 0 9 75 4 70 5.06e-18 72.8
MS.gene050290.t1 MTR_5g061290 53.333 75 35 0 1 75 252 326 6.95e-18 77.8
MS.gene050290.t1 MTR_5g079360 70.213 47 14 0 50 96 9 55 4.53e-17 70.1
MS.gene050290.t1 MTR_5g076350 48.684 76 38 1 1 75 8 83 1.16e-15 67.4
MS.gene050290.t1 MTR_5g076760 59.649 57 23 0 11 67 5 61 4.47e-15 65.9
MS.gene050290.t1 MTR_5g076780 58.333 60 25 0 15 74 4 63 5.66e-15 65.1
MS.gene050290.t1 MTR_5g076340 50.649 77 36 2 1 75 9 85 1.24e-14 64.7
MS.gene050290.t1 MTR_4g080783 76.471 34 8 0 44 77 7 40 6.78e-12 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050290.t1 AT3G52590 98.438 128 2 0 1 128 1 128 4.78e-91 259
MS.gene050290.t1 AT2G36170 98.438 128 2 0 1 128 1 128 4.78e-91 259
MS.gene050290.t1 AT4G05050 98.701 77 1 0 1 77 1 77 5.57e-50 156
MS.gene050290.t1 AT4G05050 98.701 77 1 0 1 77 77 153 7.32e-50 156
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 1 77 5.57e-50 156
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 77 153 7.32e-50 156
MS.gene050290.t1 AT2G35635 100.000 76 0 0 1 76 1 76 9.81e-50 155
MS.gene050290.t1 AT2G35635 60.526 76 30 0 3 78 79 154 2.00e-26 96.7
MS.gene050290.t1 AT2G47110 100.000 76 0 0 1 76 1 76 1.48e-49 155
MS.gene050290.t1 AT2G47110 100.000 76 0 0 1 76 1 76 1.48e-49 155
MS.gene050290.t1 AT1G31340 100.000 76 0 0 1 76 1 76 1.51e-49 155
MS.gene050290.t1 AT1G31340 62.667 75 28 0 3 77 79 153 5.16e-27 98.6
MS.gene050290.t1 AT3G62250 100.000 76 0 0 1 76 1 76 1.70e-49 155
MS.gene050290.t1 AT1G23410 100.000 76 0 0 1 76 1 76 1.71e-49 155
MS.gene050290.t1 AT4G05050 98.701 77 1 0 1 77 1 77 4.96e-49 156
MS.gene050290.t1 AT4G05050 98.701 77 1 0 1 77 77 153 4.96e-49 156
MS.gene050290.t1 AT4G05050 98.701 77 1 0 1 77 153 229 6.65e-49 156
MS.gene050290.t1 AT4G05050 98.701 77 1 0 1 77 1 77 4.96e-49 156
MS.gene050290.t1 AT4G05050 98.701 77 1 0 1 77 77 153 4.96e-49 156
MS.gene050290.t1 AT4G05050 98.701 77 1 0 1 77 153 229 6.65e-49 156
MS.gene050290.t1 AT4G05050 98.701 77 1 0 1 77 1 77 4.96e-49 156
MS.gene050290.t1 AT4G05050 98.701 77 1 0 1 77 77 153 4.96e-49 156
MS.gene050290.t1 AT4G05050 98.701 77 1 0 1 77 153 229 6.65e-49 156
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 1 77 4.96e-49 156
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 77 153 4.96e-49 156
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 153 229 6.65e-49 156
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 1 77 4.96e-49 156
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 77 153 4.96e-49 156
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 153 229 6.65e-49 156
MS.gene050290.t1 AT1G55060 97.403 77 2 0 1 77 77 153 1.90e-48 155
MS.gene050290.t1 AT1G55060 97.368 76 2 0 1 76 153 228 2.46e-46 149
MS.gene050290.t1 AT1G55060 85.714 77 11 0 1 77 1 77 2.30e-42 139
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 1 77 3.34e-48 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 77 153 3.34e-48 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 153 229 3.34e-48 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 229 305 4.47e-48 156
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 1 77 3.34e-48 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 77 153 3.34e-48 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 153 229 3.34e-48 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 229 305 4.47e-48 156
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 1 77 3.34e-48 157
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 77 153 3.34e-48 157
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 153 229 3.34e-48 157
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 229 305 4.47e-48 156
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 1 77 3.34e-48 157
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 77 153 3.34e-48 157
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 153 229 3.34e-48 157
MS.gene050290.t1 AT4G02890 98.701 77 1 0 1 77 229 305 4.47e-48 156
MS.gene050290.t1 AT5G03240 98.701 77 1 0 1 77 1 77 3.50e-48 156
MS.gene050290.t1 AT5G03240 98.701 77 1 0 1 77 77 153 3.50e-48 156
MS.gene050290.t1 AT5G03240 98.701 77 1 0 1 77 153 229 3.50e-48 156
MS.gene050290.t1 AT5G03240 100.000 76 0 0 1 76 229 304 5.28e-48 156
MS.gene050290.t1 AT5G03240 98.701 77 1 0 1 77 1 77 3.50e-48 156
MS.gene050290.t1 AT5G03240 98.701 77 1 0 1 77 77 153 3.50e-48 156
MS.gene050290.t1 AT5G03240 98.701 77 1 0 1 77 153 229 3.50e-48 156
MS.gene050290.t1 AT5G03240 100.000 76 0 0 1 76 229 304 5.28e-48 156
MS.gene050290.t1 AT5G03240 98.701 77 1 0 1 77 1 77 3.50e-48 156
MS.gene050290.t1 AT5G03240 98.701 77 1 0 1 77 77 153 3.50e-48 156
MS.gene050290.t1 AT5G03240 98.701 77 1 0 1 77 153 229 3.50e-48 156
MS.gene050290.t1 AT5G03240 100.000 76 0 0 1 76 229 304 5.28e-48 156
MS.gene050290.t1 AT5G20620 98.701 77 1 0 1 77 1 77 3.50e-48 156
MS.gene050290.t1 AT5G20620 98.701 77 1 0 1 77 77 153 3.50e-48 156
MS.gene050290.t1 AT5G20620 98.701 77 1 0 1 77 153 229 3.50e-48 156
MS.gene050290.t1 AT5G20620 100.000 76 0 0 1 76 229 304 5.28e-48 156
MS.gene050290.t1 AT1G65350 98.701 77 1 0 1 77 1 77 6.13e-48 156
MS.gene050290.t1 AT1G65350 97.403 77 2 0 1 77 152 228 9.26e-47 153
MS.gene050290.t1 AT1G65350 97.403 77 1 1 1 77 77 152 6.86e-45 148
MS.gene050290.t1 AT1G65350 80.000 90 4 1 1 76 228 317 6.05e-39 133
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 1 77 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 77 153 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 153 229 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 229 305 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 305 381 2.57e-47 156
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 1 77 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 77 153 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 153 229 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 229 305 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 305 381 2.57e-47 156
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 1 77 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 77 153 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 153 229 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 229 305 1.91e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 305 381 2.57e-47 156
MS.gene050290.t1 AT5G20620 98.701 77 1 0 1 77 1 77 1.97e-47 157
MS.gene050290.t1 AT5G20620 98.701 77 1 0 1 77 77 153 1.97e-47 157
MS.gene050290.t1 AT5G20620 98.701 77 1 0 1 77 153 229 1.97e-47 157
MS.gene050290.t1 AT5G20620 98.701 77 1 0 1 77 229 305 1.97e-47 157
MS.gene050290.t1 AT5G20620 100.000 76 0 0 1 76 305 380 2.96e-47 156
MS.gene050290.t1 AT5G37640 96.104 77 3 0 1 77 79 155 4.64e-47 154
MS.gene050290.t1 AT5G37640 92.208 77 6 0 1 77 155 231 6.93e-43 143
MS.gene050290.t1 AT5G37640 92.208 77 5 1 1 76 231 307 8.36e-41 138
MS.gene050290.t1 AT5G37640 77.922 77 17 0 1 77 3 79 5.00e-34 120
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 1 77 7.99e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 77 153 7.99e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 153 229 7.99e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 229 305 7.99e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 305 381 7.99e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 381 457 1.07e-46 156
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 1 77 7.99e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 77 153 7.99e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 153 229 7.99e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 229 305 7.99e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 305 381 7.99e-47 157
MS.gene050290.t1 AT4G05320 98.701 77 1 0 1 77 381 457 1.07e-46 156
MS.gene050290.t1 AT3G09790 92.208 77 6 0 1 77 79 155 3.39e-40 141
MS.gene050290.t1 AT3G09790 84.416 77 12 0 1 77 3 79 9.13e-37 132
MS.gene050290.t1 AT3G09790 79.730 74 15 0 1 74 552 625 2.20e-31 117
MS.gene050290.t1 AT3G09790 70.130 77 23 0 1 77 393 469 1.33e-28 109
MS.gene050290.t1 AT3G09790 73.684 76 18 1 1 74 319 394 3.27e-27 105
MS.gene050290.t1 AT3G09790 69.512 82 20 1 1 77 238 319 7.28e-27 104
MS.gene050290.t1 AT3G09790 67.073 82 20 2 1 75 155 236 3.63e-26 102
MS.gene050290.t1 AT3G09790 65.476 84 22 1 1 77 469 552 2.57e-25 100
MS.gene050290.t1 AT3G09790 92.208 77 6 0 1 77 79 155 3.39e-40 141
MS.gene050290.t1 AT3G09790 84.416 77 12 0 1 77 3 79 9.13e-37 132
MS.gene050290.t1 AT3G09790 79.730 74 15 0 1 74 552 625 2.20e-31 117
MS.gene050290.t1 AT3G09790 70.130 77 23 0 1 77 393 469 1.33e-28 109
MS.gene050290.t1 AT3G09790 73.684 76 18 1 1 74 319 394 3.27e-27 105
MS.gene050290.t1 AT3G09790 69.512 82 20 1 1 77 238 319 7.28e-27 104
MS.gene050290.t1 AT3G09790 67.073 82 20 2 1 75 155 236 3.63e-26 102
MS.gene050290.t1 AT3G09790 65.476 84 22 1 1 77 469 552 2.57e-25 100
MS.gene050290.t1 AT1G53930 75.342 73 18 0 1 73 86 158 6.40e-33 113
MS.gene050290.t1 AT1G53950 61.972 71 27 0 1 71 69 139 2.72e-25 93.6
MS.gene050290.t1 AT1G11980 55.263 76 34 0 1 76 1 76 2.81e-24 89.0
MS.gene050290.t1 AT1G53945 46.269 67 36 0 1 67 46 112 7.40e-13 61.2
MS.gene050290.t1 AT4G12570 38.667 75 45 1 1 74 95 169 4.20e-12 62.4
MS.gene050290.t1 AT5G42220 38.889 72 44 0 1 72 24 95 6.07e-12 61.6
MS.gene050290.t1 AT5G42220 38.889 72 44 0 1 72 24 95 6.07e-12 61.6

Find 31 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAGAGTCGACTCCTTC+TGG 0.282090 7.2:-7977641 None:intergenic
TGAACCTTCTTTGATGGCTT+TGG 0.289629 7.2:+7977692 MS.gene050290:CDS
GTTTACTTGATCTTCTTCTT+TGG 0.291019 7.2:-7978624 None:intergenic
TATCATTGAACCTTCTTTGA+TGG 0.309911 7.2:+7977686 MS.gene050290:CDS
CGACTCTTCATCTTGTTCTC+AGG 0.368663 7.2:+7977652 MS.gene050290:CDS
CTTGCGGCAATTCACAGCCC+TGG 0.385112 7.2:-7978476 None:intergenic
ATCTTCGTGAAAACCCTAAC+CGG 0.392499 7.2:+7977360 MS.gene050290:CDS
CGAAACGTACTTGCGGCAAA+TGG 0.413865 7.2:-7977739 None:intergenic
CATCTTGTTCTCAGGCTTCG+TGG 0.432449 7.2:+7977660 MS.gene050290:CDS
CTTGCCAAAGCCATCAAAGA+AGG 0.438792 7.2:-7977696 None:intergenic
AAAATCAATCGCTGCTGATC+CGG 0.469570 7.2:-7977570 None:intergenic
GCTGGTAAGCAGCTTGAAGA+TGG 0.474946 7.2:+7977594 MS.gene050290:CDS
TTGCGGCAATTCACAGCCCT+GGG 0.484020 7.2:-7978475 None:intergenic
GTTATGCTCGTCTTCATCCC+AGG 0.488696 7.2:+7978458 MS.gene050290:CDS
GAAGGCAAAGATTCAAGATA+AGG 0.516683 7.2:+7977431 MS.gene050290:CDS
CTTCTTTGATGGCTTTGGCA+AGG 0.516867 7.2:+7977697 MS.gene050290:CDS
GCTCTCGACCTCGAGGGTGA+TGG 0.521344 7.2:-7977388 None:intergenic
CTGGATATTGTAATCAGCTA+AGG 0.527740 7.2:-7977622 None:intergenic
ATCAATCGCTGCTGATCCGG+TGG 0.556661 7.2:-7977567 None:intergenic
TATGACCACACTTCTTCTTG+CGG 0.587437 7.2:-7978492 None:intergenic
TTATGCTCGTCTTCATCCCA+GGG 0.594695 7.2:+7978459 MS.gene050290:CDS
TGTCACTGCTCTCGACCTCG+AGG 0.600978 7.2:-7977395 None:intergenic
GAAATAATCAGGTATTCCAC+CGG 0.607938 7.2:+7977551 MS.gene050290:intron
GCAAAGATTCAAGATAAGGA+AGG 0.611123 7.2:+7977435 MS.gene050290:CDS
GTCACTGCTCTCGACCTCGA+GGG 0.618266 7.2:-7977394 None:intergenic
TCTTCGTGAAAACCCTAACC+GGG 0.632822 7.2:+7977361 MS.gene050290:CDS
AGCTGATTACAATATCCAGA+AGG 0.645289 7.2:+7977626 MS.gene050290:CDS
TGACACAATCGACAATGTGA+AGG 0.654541 7.2:+7977413 MS.gene050290:CDS
CTTGTTCTCAGGCTTCGTGG+TGG 0.665175 7.2:+7977663 MS.gene050290:CDS
CGGGAAAACCATCACCCTCG+AGG 0.716475 7.2:+7977380 MS.gene050290:CDS
AATTGCCGCAAGAAGAAGTG+TGG 0.732026 7.2:+7978487 MS.gene050290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAAATAAAAGTGTAT+TGG - chr7.2:7978030-7978049 None:intergenic 10.0%
!!! TTTTTATTCAATTTCATAGT+TGG + chr7.2:7978367-7978386 MS.gene050290:intron 15.0%
!! AAAAATCATTCAATTCAAAC+AGG - chr7.2:7977981-7978000 None:intergenic 20.0%
!! TGATTGTGATATTATTGAAT+TGG + chr7.2:7977801-7977820 MS.gene050290:intron 20.0%
!!! TTGCATAAGCTTTTTTTTTA+AGG - chr7.2:7978061-7978080 None:intergenic 20.0%
! AGTAAGAAATGGATCATTAT+AGG - chr7.2:7978286-7978305 None:intergenic 25.0%
! CAACTGCAGTAAAAAAAAAA+AGG - chr7.2:7978601-7978620 None:intergenic 25.0%
! GTAAGAAATGGATCATTATA+GGG - chr7.2:7978285-7978304 None:intergenic 25.0%
! GTTATGTATAAGCTCAAAAA+GGG - chr7.2:7977882-7977901 None:intergenic 25.0%
! TGTTATGTATAAGCTCAAAA+AGG - chr7.2:7977883-7977902 None:intergenic 25.0%
! TTATGCAATATATCCCATTT+AGG + chr7.2:7977954-7977973 MS.gene050290:intron 25.0%
! TTATTCAATTTCATAGTTGG+TGG + chr7.2:7978370-7978389 MS.gene050290:intron 25.0%
! TTTGATCTAAGTGTGAATTT+GGG + chr7.2:7978419-7978438 MS.gene050290:intron 25.0%
! TTTGTATAGCTGATATTGAT+GGG + chr7.2:7978205-7978224 MS.gene050290:intron 25.0%
!! GTAATTTTGTGCTATGTTTT+TGG + chr7.2:7978547-7978566 MS.gene050290:intron 25.0%
!! TGTTGTTTAAAAGTGCAATT+GGG + chr7.2:7978247-7978266 MS.gene050290:intron 25.0%
!! TTTTGATCTAAGTGTGAATT+TGG + chr7.2:7978418-7978437 MS.gene050290:intron 25.0%
!!! ATTGAATGATTTTTGAGCTT+AGG + chr7.2:7977987-7978006 MS.gene050290:intron 25.0%
!!! TTGTTGTTTAAAAGTGCAAT+TGG + chr7.2:7978246-7978265 MS.gene050290:intron 25.0%
!!! TTTTTTTTTTACTGCAGTTG+AGG + chr7.2:7978601-7978620 MS.gene050290:intron 25.0%
AACCAGGACTAATTACATTA+AGG - chr7.2:7978178-7978197 None:intergenic 30.0%
AACTGGAAAATATTAAACCC+AGG - chr7.2:7978315-7978334 None:intergenic 30.0%
AATTCAAACAGGACCTAAAT+GGG - chr7.2:7977970-7977989 None:intergenic 30.0%
ACCAGGACTAATTACATTAA+GGG - chr7.2:7978177-7978196 None:intergenic 30.0%
CATTTCTTACTTTATCACCT+GGG + chr7.2:7978295-7978314 MS.gene050290:intron 30.0%
GTTTGTATAGCTGATATTGA+TGG + chr7.2:7978204-7978223 MS.gene050290:intron 30.0%
TAATTCATAAGTTCTCGCTA+AGG - chr7.2:7978088-7978107 None:intergenic 30.0%
TATCATTGAACCTTCTTTGA+TGG + chr7.2:7977686-7977705 MS.gene050290:CDS 30.0%
TTGATCTAAGTGTGAATTTG+GGG + chr7.2:7978420-7978439 MS.gene050290:intron 30.0%
! CGCTTTTGAATGAAATAATC+AGG + chr7.2:7977540-7977559 MS.gene050290:intron 30.0%
! GCACTTTTAAACAACAAAAG+AGG - chr7.2:7978243-7978262 None:intergenic 30.0%
! GTTGTTTAAAAGTGCAATTG+GGG + chr7.2:7978248-7978267 MS.gene050290:intron 30.0%
!!! AGCTTTTAAGTTAATCCAGA+CGG + chr7.2:7978151-7978170 MS.gene050290:intron 30.0%
!!! TTTCTCGATTTGGTACATTT+TGG + chr7.2:7978338-7978357 MS.gene050290:intron 30.0%
ACAAAACAAACATCAGCACA+AGG - chr7.2:7978576-7978595 None:intergenic 35.0%
ACCAAATCGAGAAAATCAAC+TGG - chr7.2:7978332-7978351 None:intergenic 35.0%
AGCTGATTACAATATCCAGA+AGG + chr7.2:7977626-7977645 MS.gene050290:CDS 35.0%
ATGGCTACATGAATCAAACA+AGG - chr7.2:7977859-7977878 None:intergenic 35.0%
CAATTCAAACAGGACCTAAA+TGG - chr7.2:7977971-7977990 None:intergenic 35.0%
CCAGGTGATAAAGTAAGAAA+TGG - chr7.2:7978297-7978316 None:intergenic 35.0%
CCATTTCTTACTTTATCACC+TGG + chr7.2:7978294-7978313 MS.gene050290:intron 35.0%
CTGGATATTGTAATCAGCTA+AGG - chr7.2:7977625-7977644 None:intergenic 35.0%
GAAATAATCAGGTATTCCAC+CGG + chr7.2:7977551-7977570 MS.gene050290:intron 35.0%
GAAGGCAAAGATTCAAGATA+AGG + chr7.2:7977431-7977450 MS.gene050290:CDS 35.0%
GCAAAGATTCAAGATAAGGA+AGG + chr7.2:7977435-7977454 MS.gene050290:CDS 35.0%
TGTATAAGCTCAAAAAGGGA+TGG - chr7.2:7977878-7977897 None:intergenic 35.0%
! ATTTCATTCAAAAGCGCGTT+TGG - chr7.2:7977536-7977555 None:intergenic 35.0%
!! TCCAGTTGATTTTCTCGATT+TGG + chr7.2:7978328-7978347 MS.gene050290:intron 35.0%
!!! TTGTGCTGATGTTTGTTTTG+TGG + chr7.2:7978575-7978594 MS.gene050290:intron 35.0%
AAAATCAATCGCTGCTGATC+CGG - chr7.2:7977573-7977592 None:intergenic 40.0%
ATCTTCGTGAAAACCCTAAC+CGG + chr7.2:7977360-7977379 MS.gene050290:CDS 40.0%
GAAATGACGAAACGTACTTG+CGG - chr7.2:7977749-7977768 None:intergenic 40.0%
GCCCTTAATGTAATTAGTCC+TGG + chr7.2:7978173-7978192 MS.gene050290:intron 40.0%
TAATTACATTAAGGGCCGTC+TGG - chr7.2:7978169-7978188 None:intergenic 40.0%
TATGACCACACTTCTTCTTG+CGG - chr7.2:7978495-7978514 None:intergenic 40.0%
TGACACAATCGACAATGTGA+AGG + chr7.2:7977413-7977432 MS.gene050290:CDS 40.0%
! TGAACCTTCTTTGATGGCTT+TGG + chr7.2:7977692-7977711 MS.gene050290:CDS 40.0%
AATTGCCGCAAGAAGAAGTG+TGG + chr7.2:7978487-7978506 MS.gene050290:CDS 45.0%
CGACTCTTCATCTTGTTCTC+AGG + chr7.2:7977652-7977671 MS.gene050290:CDS 45.0%
CTATACAAACAGCAGCAACC+AGG - chr7.2:7978194-7978213 None:intergenic 45.0%
CTTGCCAAAGCCATCAAAGA+AGG - chr7.2:7977699-7977718 None:intergenic 45.0%
TCTTCGTGAAAACCCTAACC+GGG + chr7.2:7977361-7977380 MS.gene050290:CDS 45.0%
TTATGCTCGTCTTCATCCCA+GGG + chr7.2:7978459-7978478 MS.gene050290:CDS 45.0%
!! CTTCTTTGATGGCTTTGGCA+AGG + chr7.2:7977697-7977716 MS.gene050290:CDS 45.0%
!!! TGCGGCAAATGGTTTTGTCT+TGG - chr7.2:7977731-7977750 None:intergenic 45.0%
CATCTTGTTCTCAGGCTTCG+TGG + chr7.2:7977660-7977679 MS.gene050290:CDS 50.0%
CGAAACGTACTTGCGGCAAA+TGG - chr7.2:7977742-7977761 None:intergenic 50.0%
GCTGGTAAGCAGCTTGAAGA+TGG + chr7.2:7977594-7977613 MS.gene050290:CDS 50.0%
GTTATGCTCGTCTTCATCCC+AGG + chr7.2:7978458-7978477 MS.gene050290:CDS 50.0%
! GATGAAGAGTCGACTCCTTC+TGG - chr7.2:7977644-7977663 None:intergenic 50.0%
!! CAGCAGCGATTGATTTTCGC+TGG + chr7.2:7977576-7977595 MS.gene050290:CDS 50.0%
!! GGTGATGGTTTTCCCGGTTA+GGG - chr7.2:7977376-7977395 None:intergenic 50.0%
ATCAATCGCTGCTGATCCGG+TGG - chr7.2:7977570-7977589 None:intergenic 55.0%
CTTGTTCTCAGGCTTCGTGG+TGG + chr7.2:7977663-7977682 MS.gene050290:CDS 55.0%
TTGCGGCAATTCACAGCCCT+GGG - chr7.2:7978478-7978497 None:intergenic 55.0%
!! CTCGAGGGTGATGGTTTTCC+CGG - chr7.2:7977382-7977401 None:intergenic 55.0%
!! GGGTGATGGTTTTCCCGGTT+AGG - chr7.2:7977377-7977396 None:intergenic 55.0%
CGGGAAAACCATCACCCTCG+AGG + chr7.2:7977380-7977399 MS.gene050290:CDS 60.0%
CTTGCGGCAATTCACAGCCC+TGG - chr7.2:7978479-7978498 None:intergenic 60.0%
GTCACTGCTCTCGACCTCGA+GGG - chr7.2:7977397-7977416 None:intergenic 60.0%
TGTCACTGCTCTCGACCTCG+AGG - chr7.2:7977398-7977417 None:intergenic 60.0%
GCTCTCGACCTCGAGGGTGA+TGG - chr7.2:7977391-7977410 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 7977354 7978644 7977354 ID=MS.gene050290
chr7.2 mRNA 7977354 7978644 7977354 ID=MS.gene050290.t1;Parent=MS.gene050290
chr7.2 exon 7977354 7977456 7977354 ID=MS.gene050290.t1.exon1;Parent=MS.gene050290.t1
chr7.2 CDS 7977354 7977456 7977354 ID=cds.MS.gene050290.t1;Parent=MS.gene050290.t1
chr7.2 exon 7977562 7977751 7977562 ID=MS.gene050290.t1.exon2;Parent=MS.gene050290.t1
chr7.2 CDS 7977562 7977751 7977562 ID=cds.MS.gene050290.t1;Parent=MS.gene050290.t1
chr7.2 exon 7978456 7978522 7978456 ID=MS.gene050290.t1.exon3;Parent=MS.gene050290.t1
chr7.2 CDS 7978456 7978522 7978456 ID=cds.MS.gene050290.t1;Parent=MS.gene050290.t1
chr7.2 exon 7978618 7978644 7978618 ID=MS.gene050290.t1.exon4;Parent=MS.gene050290.t1
chr7.2 CDS 7978618 7978644 7978618 ID=cds.MS.gene050290.t1;Parent=MS.gene050290.t1
Gene Sequence

>MS.gene050290

ATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAGCAGTGACACAATCGACAATGTGAAGGCAAAGATTCAAGATAAGGAAGGTAACAAACAAAATAACACAATCATAATCATCTATTAATCGCTTTTCATAATCTGAATTTGTATTTATTTATTTAACCAAACGCGCTTTTGAATGAAATAATCAGGTATTCCACCGGATCAGCAGCGATTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTAGCTGATTACAATATCCAGAAGGAGTCGACTCTTCATCTTGTTCTCAGGCTTCGTGGTGGTATCATTGAACCTTCTTTGATGGCTTTGGCAAGGAAATACAACCAAGACAAAACCATTTGCCGCAAGTACGTTTCGTCATTTCTTATATCAATTGTTTATTTCATTTTATATTGTTGATTGTGATATTATTGAATTGGCTAGAAATATTGTATATGCTAGATTATTATGTCCTTGTTTGATTCATGTAGCCATCCCTTTTTGAGCTTATACATAACATTTATGTAAATCAATACACTTCTATTTCTTATTAGTTTTTTAAAAAACAGCTTATGCAATATATCCCATTTAGGTCCTGTTTGAATTGAATGATTTTTGAGCTTAGGCTTAACATTTATGTAAACCAATACACTTTTATTTATTATTCATAAGTTCCTTAAAAAAAAAGCTTATGCAATTTTCCTTAGCGAGAACTTATGAATTAGCTTGTTTATTTGCATAAGCTATTATTCACAAGCTTAAAAATAAGCTTTTAAGTTAATCCAGACGGCCCTTAATGTAATTAGTCCTGGTTGCTGCTGTTTGTATAGCTGATATTGATGGGACTATAACTTAGCCTCTTTTGTTGTTTAAAAGTGCAATTGGGGTTATATAAGTTCCCTATAATGATCCATTTCTTACTTTATCACCTGGGTTTAATATTTTCCAGTTGATTTTCTCGATTTGGTACATTTTGGATATTGTTTTTATTCAATTTCATAGTTGGTGGTTCAGTACATAGTGCAATTATTTAATTTTGATCTAAGTGTGAATTTGGGGTTTTTGTTTGTAGATGTTATGCTCGTCTTCATCCCAGGGCTGTGAATTGCCGCAAGAAGAAGTGTGGTCATAGCAATCAAGTAAGCGTTCAGACAATGCTGTTTGTAATTTTGTGCTATGTTTTTGGTTACCTTGTGCTGATGTTTGTTTTGTGGCCTTTTTTTTTTTACTGCAGTTGAGGCCAAAGAAGAAGATCAAGTAA

Protein sequence

>MS.gene050290.t1

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK