AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034846


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034846.t1 MTR_7g105080 100.000 128 0 0 1 128 1 128 1.29e-92 263
MS.gene034846.t1 MTR_3g092130 100.000 128 0 0 1 128 1 128 1.29e-92 263
MS.gene034846.t1 MTR_1g059690 100.000 128 0 0 1 128 1 128 1.29e-92 263
MS.gene034846.t1 MTR_3g092130 98.361 122 2 0 1 122 1 122 2.83e-87 250
MS.gene034846.t1 MTR_5g092700 100.000 76 0 0 1 76 1 76 9.38e-50 155
MS.gene034846.t1 MTR_5g092700 62.162 74 28 0 3 76 79 152 1.84e-26 96.7
MS.gene034846.t1 MTR_4g073580 100.000 76 0 0 1 76 1 76 9.38e-50 155
MS.gene034846.t1 MTR_4g073580 62.162 74 28 0 3 76 79 152 1.84e-26 96.7
MS.gene034846.t1 MTR_8g088060 100.000 76 0 0 1 76 1 76 1.45e-49 155
MS.gene034846.t1 MTR_5g033960 100.000 76 0 0 1 76 1 76 1.55e-49 155
MS.gene034846.t1 MTR_4g073580 100.000 76 0 0 1 76 1 76 3.56e-49 155
MS.gene034846.t1 MTR_4g073580 44.231 104 28 1 3 76 79 182 6.31e-20 80.9
MS.gene034846.t1 MTR_4g088485 98.701 77 1 0 1 77 1 77 4.21e-49 156
MS.gene034846.t1 MTR_4g088485 98.701 77 1 0 1 77 138 214 5.53e-49 155
MS.gene034846.t1 MTR_4g088485 79.221 77 1 1 1 77 77 138 3.49e-34 118
MS.gene034846.t1 MTR_7g116360 98.701 77 1 0 1 77 1 77 4.74e-49 156
MS.gene034846.t1 MTR_7g116360 98.701 77 1 0 1 77 77 153 4.74e-49 156
MS.gene034846.t1 MTR_7g116360 98.701 77 1 0 1 77 153 229 6.35e-49 156
MS.gene034846.t1 MTR_1g066390 98.701 77 1 0 1 77 1 77 5.54e-49 156
MS.gene034846.t1 MTR_1g066390 98.701 77 1 0 1 77 77 153 5.54e-49 156
MS.gene034846.t1 MTR_1g066390 100.000 76 0 0 1 76 153 228 8.47e-49 156
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 1 77 1.27e-48 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 77 153 1.27e-48 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 153 229 1.27e-48 157
MS.gene034846.t1 MTR_4g080920 97.403 77 2 0 1 77 77 153 1.39e-48 155
MS.gene034846.t1 MTR_4g080920 97.403 77 2 0 1 77 1 77 2.56e-48 154
MS.gene034846.t1 MTR_4g080920 69.737 76 23 0 1 76 153 228 5.76e-30 107
MS.gene034846.t1 MTR_6g061930 98.701 77 1 0 1 77 1 77 2.73e-48 156
MS.gene034846.t1 MTR_6g061930 98.701 77 1 0 1 77 77 153 2.73e-48 156
MS.gene034846.t1 MTR_6g061930 98.701 77 1 0 1 77 214 290 3.61e-48 156
MS.gene034846.t1 MTR_6g061930 76.623 77 3 1 1 77 153 214 1.26e-31 113
MS.gene034846.t1 MTR_7g116360 98.701 77 1 0 1 77 49 125 3.06e-48 156
MS.gene034846.t1 MTR_7g116360 98.701 77 1 0 1 77 125 201 3.06e-48 156
MS.gene034846.t1 MTR_7g116360 98.701 77 1 0 1 77 201 277 3.97e-48 155
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 1 77 3.19e-48 157
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 77 153 3.19e-48 157
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 153 229 3.19e-48 157
MS.gene034846.t1 MTR_4g081010 100.000 76 0 0 1 76 229 304 4.81e-48 156
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 1 77 4.89e-48 155
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 77 153 4.89e-48 155
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 153 229 4.89e-48 155
MS.gene034846.t1 MTR_8g081020 98.701 77 1 0 1 77 1 77 1.76e-47 157
MS.gene034846.t1 MTR_8g081020 98.701 77 1 0 1 77 77 153 1.76e-47 157
MS.gene034846.t1 MTR_8g081020 98.701 77 1 0 1 77 153 229 1.76e-47 157
MS.gene034846.t1 MTR_8g081020 98.701 77 1 0 1 77 229 305 1.76e-47 157
MS.gene034846.t1 MTR_8g081020 100.000 76 0 0 1 76 305 380 2.65e-47 156
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 1 77 1.78e-47 157
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 77 153 1.78e-47 157
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 153 229 1.78e-47 157
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 229 305 1.78e-47 157
MS.gene034846.t1 MTR_4g081010 100.000 76 0 0 1 76 305 380 2.68e-47 156
MS.gene034846.t1 MTR_4g080797 98.701 77 1 0 1 77 1 77 1.82e-47 157
MS.gene034846.t1 MTR_4g080797 98.701 77 1 0 1 77 77 153 1.82e-47 157
MS.gene034846.t1 MTR_4g080797 98.701 77 1 0 1 77 153 229 1.82e-47 157
MS.gene034846.t1 MTR_4g080797 98.701 77 1 0 1 77 229 305 1.82e-47 157
MS.gene034846.t1 MTR_4g080797 98.701 77 1 0 1 77 305 381 2.46e-47 156
MS.gene034846.t1 MTR_4g091580 98.701 77 1 0 1 77 1 77 1.82e-47 157
MS.gene034846.t1 MTR_4g091580 98.701 77 1 0 1 77 77 153 1.82e-47 157
MS.gene034846.t1 MTR_4g091580 98.701 77 1 0 1 77 153 229 1.82e-47 157
MS.gene034846.t1 MTR_4g091580 98.701 77 1 0 1 77 305 381 2.46e-47 156
MS.gene034846.t1 MTR_4g091580 97.403 77 2 0 1 77 229 305 5.42e-47 155
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 1 77 1.82e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 77 153 1.82e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 153 229 1.82e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 229 305 1.82e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 305 381 2.46e-47 156
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 1 77 7.63e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 77 153 7.63e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 153 229 7.63e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 229 305 7.63e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 305 381 7.63e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 381 457 1.03e-46 156
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 1 77 7.63e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 77 153 7.63e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 153 229 7.63e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 229 305 7.63e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 305 381 7.63e-47 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 381 457 1.03e-46 156
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 1 77 2.44e-46 157
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 77 153 2.44e-46 157
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 153 229 2.44e-46 157
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 229 305 2.44e-46 157
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 305 381 2.44e-46 157
MS.gene034846.t1 MTR_4g081010 98.701 77 1 0 1 77 381 457 2.44e-46 157
MS.gene034846.t1 MTR_4g081010 100.000 76 0 0 1 76 457 532 3.63e-46 156
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 1 77 2.52e-46 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 77 153 2.52e-46 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 153 229 2.52e-46 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 229 305 2.52e-46 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 305 381 2.52e-46 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 381 457 2.52e-46 157
MS.gene034846.t1 MTR_8g018230 98.701 77 1 0 1 77 457 533 3.37e-46 156
MS.gene034846.t1 MTR_4g091580 98.701 77 1 0 1 77 1 77 2.65e-46 157
MS.gene034846.t1 MTR_4g091580 98.701 77 1 0 1 77 77 153 2.65e-46 157
MS.gene034846.t1 MTR_4g091580 98.701 77 1 0 1 77 153 229 2.65e-46 157
MS.gene034846.t1 MTR_4g091580 98.701 77 1 0 1 77 229 305 2.65e-46 157
MS.gene034846.t1 MTR_4g091580 98.701 77 1 0 1 77 381 457 2.65e-46 157
MS.gene034846.t1 MTR_4g091580 98.701 77 1 0 1 77 457 533 3.55e-46 156
MS.gene034846.t1 MTR_4g091580 96.104 77 3 0 1 77 305 381 1.00e-44 152
MS.gene034846.t1 MTR_8g479250 96.104 77 3 0 1 77 141 217 1.09e-45 150
MS.gene034846.t1 MTR_8g479250 76.389 72 6 1 1 72 217 277 6.83e-27 101
MS.gene034846.t1 MTR_8g479250 100.000 41 0 0 1 41 1 41 1.21e-20 85.1
MS.gene034846.t1 MTR_8g479250 91.429 35 3 0 43 77 107 141 1.11e-14 68.9
MS.gene034846.t1 MTR_4g088495 98.701 77 1 0 1 77 77 153 2.16e-45 157
MS.gene034846.t1 MTR_4g088495 98.701 77 1 0 1 77 153 229 2.16e-45 157
MS.gene034846.t1 MTR_4g088495 98.701 77 1 0 1 77 229 305 2.16e-45 157
MS.gene034846.t1 MTR_4g088495 98.701 77 1 0 1 77 305 381 2.16e-45 157
MS.gene034846.t1 MTR_4g088495 98.701 77 1 0 1 77 381 457 2.16e-45 157
MS.gene034846.t1 MTR_4g088495 98.701 77 1 0 1 77 457 533 2.16e-45 157
MS.gene034846.t1 MTR_4g088495 98.701 77 1 0 1 77 533 609 2.16e-45 157
MS.gene034846.t1 MTR_4g088495 98.701 77 1 0 1 77 609 685 2.16e-45 157
MS.gene034846.t1 MTR_4g088495 98.701 77 1 0 1 77 685 761 2.16e-45 157
MS.gene034846.t1 MTR_4g088495 98.701 77 1 0 1 77 761 837 2.88e-45 156
MS.gene034846.t1 MTR_4g088495 97.403 77 2 0 1 77 1 77 4.96e-44 153
MS.gene034846.t1 MTR_1g046640 71.053 76 22 0 1 76 240 315 3.01e-28 105
MS.gene034846.t1 MTR_5g076810 68.831 77 23 1 1 76 194 270 1.09e-27 103
MS.gene034846.t1 MTR_5g076660 69.863 73 22 0 1 73 266 338 8.62e-27 102
MS.gene034846.t1 MTR_5g067400 68.421 76 24 0 1 76 241 316 1.74e-25 98.2
MS.gene034846.t1 MTR_5g061310 60.000 75 30 0 1 75 2 76 4.97e-25 90.9
MS.gene034846.t1 MTR_5g076370 64.384 73 26 0 1 73 267 339 3.83e-23 92.4
MS.gene034846.t1 MTR_2g038430 61.333 75 29 0 1 75 268 342 5.57e-23 92.0
MS.gene034846.t1 MTR_5g076505 61.333 75 29 0 1 75 240 314 8.04e-23 90.9
MS.gene034846.t1 MTR_1g046650 57.895 76 32 0 1 76 171 246 3.44e-22 88.2
MS.gene034846.t1 MTR_1g046650 57.895 76 32 0 1 76 240 315 4.89e-22 89.0
MS.gene034846.t1 MTR_5g076720 65.333 75 26 0 1 75 315 389 6.25e-22 89.4
MS.gene034846.t1 MTR_1g046650 57.895 76 32 0 1 76 240 315 6.95e-22 88.6
MS.gene034846.t1 MTR_1g046650 57.895 76 32 0 1 76 271 346 9.51e-22 88.6
MS.gene034846.t1 MTR_5g076740 59.211 76 30 1 1 75 86 161 1.13e-21 84.7
MS.gene034846.t1 MTR_2g038420 60.000 75 30 0 1 75 260 334 1.35e-21 88.2
MS.gene034846.t1 MTR_7g094390 58.667 75 31 0 1 75 402 476 8.93e-21 86.7
MS.gene034846.t1 MTR_5g076520 57.333 75 31 1 1 74 244 318 3.43e-19 81.3
MS.gene034846.t1 MTR_7g024290 60.526 76 29 1 1 75 241 316 8.99e-19 80.1
MS.gene034846.t1 MTR_4g009980 55.224 67 30 0 9 75 4 70 5.06e-18 72.8
MS.gene034846.t1 MTR_5g061290 53.333 75 35 0 1 75 252 326 6.95e-18 77.8
MS.gene034846.t1 MTR_5g079360 70.213 47 14 0 50 96 9 55 4.53e-17 70.1
MS.gene034846.t1 MTR_5g076350 48.684 76 38 1 1 75 8 83 1.16e-15 67.4
MS.gene034846.t1 MTR_5g076760 59.649 57 23 0 11 67 5 61 4.47e-15 65.9
MS.gene034846.t1 MTR_5g076780 58.333 60 25 0 15 74 4 63 5.66e-15 65.1
MS.gene034846.t1 MTR_5g076340 50.649 77 36 2 1 75 9 85 1.24e-14 64.7
MS.gene034846.t1 MTR_4g080783 76.471 34 8 0 44 77 7 40 6.78e-12 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034846.t1 AT3G52590 98.438 128 2 0 1 128 1 128 4.78e-91 259
MS.gene034846.t1 AT2G36170 98.438 128 2 0 1 128 1 128 4.78e-91 259
MS.gene034846.t1 AT4G05050 98.701 77 1 0 1 77 1 77 5.57e-50 156
MS.gene034846.t1 AT4G05050 98.701 77 1 0 1 77 77 153 7.32e-50 156
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 1 77 5.57e-50 156
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 77 153 7.32e-50 156
MS.gene034846.t1 AT2G35635 100.000 76 0 0 1 76 1 76 9.81e-50 155
MS.gene034846.t1 AT2G35635 60.526 76 30 0 3 78 79 154 2.00e-26 96.7
MS.gene034846.t1 AT2G47110 100.000 76 0 0 1 76 1 76 1.48e-49 155
MS.gene034846.t1 AT2G47110 100.000 76 0 0 1 76 1 76 1.48e-49 155
MS.gene034846.t1 AT1G31340 100.000 76 0 0 1 76 1 76 1.51e-49 155
MS.gene034846.t1 AT1G31340 62.667 75 28 0 3 77 79 153 5.16e-27 98.6
MS.gene034846.t1 AT3G62250 100.000 76 0 0 1 76 1 76 1.70e-49 155
MS.gene034846.t1 AT1G23410 100.000 76 0 0 1 76 1 76 1.71e-49 155
MS.gene034846.t1 AT4G05050 98.701 77 1 0 1 77 1 77 4.96e-49 156
MS.gene034846.t1 AT4G05050 98.701 77 1 0 1 77 77 153 4.96e-49 156
MS.gene034846.t1 AT4G05050 98.701 77 1 0 1 77 153 229 6.65e-49 156
MS.gene034846.t1 AT4G05050 98.701 77 1 0 1 77 1 77 4.96e-49 156
MS.gene034846.t1 AT4G05050 98.701 77 1 0 1 77 77 153 4.96e-49 156
MS.gene034846.t1 AT4G05050 98.701 77 1 0 1 77 153 229 6.65e-49 156
MS.gene034846.t1 AT4G05050 98.701 77 1 0 1 77 1 77 4.96e-49 156
MS.gene034846.t1 AT4G05050 98.701 77 1 0 1 77 77 153 4.96e-49 156
MS.gene034846.t1 AT4G05050 98.701 77 1 0 1 77 153 229 6.65e-49 156
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 1 77 4.96e-49 156
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 77 153 4.96e-49 156
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 153 229 6.65e-49 156
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 1 77 4.96e-49 156
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 77 153 4.96e-49 156
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 153 229 6.65e-49 156
MS.gene034846.t1 AT1G55060 97.403 77 2 0 1 77 77 153 1.90e-48 155
MS.gene034846.t1 AT1G55060 97.368 76 2 0 1 76 153 228 2.46e-46 149
MS.gene034846.t1 AT1G55060 85.714 77 11 0 1 77 1 77 2.30e-42 139
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 1 77 3.34e-48 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 77 153 3.34e-48 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 153 229 3.34e-48 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 229 305 4.47e-48 156
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 1 77 3.34e-48 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 77 153 3.34e-48 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 153 229 3.34e-48 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 229 305 4.47e-48 156
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 1 77 3.34e-48 157
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 77 153 3.34e-48 157
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 153 229 3.34e-48 157
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 229 305 4.47e-48 156
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 1 77 3.34e-48 157
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 77 153 3.34e-48 157
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 153 229 3.34e-48 157
MS.gene034846.t1 AT4G02890 98.701 77 1 0 1 77 229 305 4.47e-48 156
MS.gene034846.t1 AT5G03240 98.701 77 1 0 1 77 1 77 3.50e-48 156
MS.gene034846.t1 AT5G03240 98.701 77 1 0 1 77 77 153 3.50e-48 156
MS.gene034846.t1 AT5G03240 98.701 77 1 0 1 77 153 229 3.50e-48 156
MS.gene034846.t1 AT5G03240 100.000 76 0 0 1 76 229 304 5.28e-48 156
MS.gene034846.t1 AT5G03240 98.701 77 1 0 1 77 1 77 3.50e-48 156
MS.gene034846.t1 AT5G03240 98.701 77 1 0 1 77 77 153 3.50e-48 156
MS.gene034846.t1 AT5G03240 98.701 77 1 0 1 77 153 229 3.50e-48 156
MS.gene034846.t1 AT5G03240 100.000 76 0 0 1 76 229 304 5.28e-48 156
MS.gene034846.t1 AT5G03240 98.701 77 1 0 1 77 1 77 3.50e-48 156
MS.gene034846.t1 AT5G03240 98.701 77 1 0 1 77 77 153 3.50e-48 156
MS.gene034846.t1 AT5G03240 98.701 77 1 0 1 77 153 229 3.50e-48 156
MS.gene034846.t1 AT5G03240 100.000 76 0 0 1 76 229 304 5.28e-48 156
MS.gene034846.t1 AT5G20620 98.701 77 1 0 1 77 1 77 3.50e-48 156
MS.gene034846.t1 AT5G20620 98.701 77 1 0 1 77 77 153 3.50e-48 156
MS.gene034846.t1 AT5G20620 98.701 77 1 0 1 77 153 229 3.50e-48 156
MS.gene034846.t1 AT5G20620 100.000 76 0 0 1 76 229 304 5.28e-48 156
MS.gene034846.t1 AT1G65350 98.701 77 1 0 1 77 1 77 6.13e-48 156
MS.gene034846.t1 AT1G65350 97.403 77 2 0 1 77 152 228 9.26e-47 153
MS.gene034846.t1 AT1G65350 97.403 77 1 1 1 77 77 152 6.86e-45 148
MS.gene034846.t1 AT1G65350 80.000 90 4 1 1 76 228 317 6.05e-39 133
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 1 77 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 77 153 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 153 229 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 229 305 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 305 381 2.57e-47 156
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 1 77 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 77 153 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 153 229 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 229 305 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 305 381 2.57e-47 156
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 1 77 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 77 153 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 153 229 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 229 305 1.91e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 305 381 2.57e-47 156
MS.gene034846.t1 AT5G20620 98.701 77 1 0 1 77 1 77 1.97e-47 157
MS.gene034846.t1 AT5G20620 98.701 77 1 0 1 77 77 153 1.97e-47 157
MS.gene034846.t1 AT5G20620 98.701 77 1 0 1 77 153 229 1.97e-47 157
MS.gene034846.t1 AT5G20620 98.701 77 1 0 1 77 229 305 1.97e-47 157
MS.gene034846.t1 AT5G20620 100.000 76 0 0 1 76 305 380 2.96e-47 156
MS.gene034846.t1 AT5G37640 96.104 77 3 0 1 77 79 155 4.64e-47 154
MS.gene034846.t1 AT5G37640 92.208 77 6 0 1 77 155 231 6.93e-43 143
MS.gene034846.t1 AT5G37640 92.208 77 5 1 1 76 231 307 8.36e-41 138
MS.gene034846.t1 AT5G37640 77.922 77 17 0 1 77 3 79 5.00e-34 120
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 1 77 7.99e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 77 153 7.99e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 153 229 7.99e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 229 305 7.99e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 305 381 7.99e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 381 457 1.07e-46 156
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 1 77 7.99e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 77 153 7.99e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 153 229 7.99e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 229 305 7.99e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 305 381 7.99e-47 157
MS.gene034846.t1 AT4G05320 98.701 77 1 0 1 77 381 457 1.07e-46 156
MS.gene034846.t1 AT3G09790 92.208 77 6 0 1 77 79 155 3.39e-40 141
MS.gene034846.t1 AT3G09790 84.416 77 12 0 1 77 3 79 9.13e-37 132
MS.gene034846.t1 AT3G09790 79.730 74 15 0 1 74 552 625 2.20e-31 117
MS.gene034846.t1 AT3G09790 70.130 77 23 0 1 77 393 469 1.33e-28 109
MS.gene034846.t1 AT3G09790 73.684 76 18 1 1 74 319 394 3.27e-27 105
MS.gene034846.t1 AT3G09790 69.512 82 20 1 1 77 238 319 7.28e-27 104
MS.gene034846.t1 AT3G09790 67.073 82 20 2 1 75 155 236 3.63e-26 102
MS.gene034846.t1 AT3G09790 65.476 84 22 1 1 77 469 552 2.57e-25 100
MS.gene034846.t1 AT3G09790 92.208 77 6 0 1 77 79 155 3.39e-40 141
MS.gene034846.t1 AT3G09790 84.416 77 12 0 1 77 3 79 9.13e-37 132
MS.gene034846.t1 AT3G09790 79.730 74 15 0 1 74 552 625 2.20e-31 117
MS.gene034846.t1 AT3G09790 70.130 77 23 0 1 77 393 469 1.33e-28 109
MS.gene034846.t1 AT3G09790 73.684 76 18 1 1 74 319 394 3.27e-27 105
MS.gene034846.t1 AT3G09790 69.512 82 20 1 1 77 238 319 7.28e-27 104
MS.gene034846.t1 AT3G09790 67.073 82 20 2 1 75 155 236 3.63e-26 102
MS.gene034846.t1 AT3G09790 65.476 84 22 1 1 77 469 552 2.57e-25 100
MS.gene034846.t1 AT1G53930 75.342 73 18 0 1 73 86 158 6.40e-33 113
MS.gene034846.t1 AT1G53950 61.972 71 27 0 1 71 69 139 2.72e-25 93.6
MS.gene034846.t1 AT1G11980 55.263 76 34 0 1 76 1 76 2.81e-24 89.0
MS.gene034846.t1 AT1G53945 46.269 67 36 0 1 67 46 112 7.40e-13 61.2
MS.gene034846.t1 AT4G12570 38.667 75 45 1 1 74 95 169 4.20e-12 62.4
MS.gene034846.t1 AT5G42220 38.889 72 44 0 1 72 24 95 6.07e-12 61.6
MS.gene034846.t1 AT5G42220 38.889 72 44 0 1 72 24 95 6.07e-12 61.6

Find 29 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCTTTGTCTTGAATCT+TGG 0.270573 1.4:-48708571 None:intergenic
ATCTACTTAATCTTCTTCTT+TGG 0.272953 1.4:-48709516 None:intergenic
CGAGCCTTCTTTGATGGCTT+TGG 0.276267 1.4:+48708880 MS.gene034846:CDS
GAGTAATCGTCTTCCCTGTT+AGG 0.315119 1.4:-48708509 None:intergenic
TATTATCGAGCCTTCTTTGA+TGG 0.326217 1.4:+48708874 MS.gene034846:CDS
TTCCTGCAGTTCACAGCCCT+TGG 0.384485 1.4:-48709354 None:intergenic
AAAATCAAACGCTGCTGATC+CGG 0.410821 1.4:-48708670 None:intergenic
AGTAATCGTCTTCCCTGTTA+GGG 0.439791 1.4:-48708508 None:intergenic
GAAGTGTGGTCACAGTAATC+AGG 0.450078 1.4:+48709380 MS.gene034846:CDS
CATCTTGTGCTCCGGCTTCG+TGG 0.459546 1.4:+48708848 MS.gene034846:CDS
TTTGAATGTTGTAATCAGCT+AGG 0.460200 1.4:-48708723 None:intergenic
AGCTGATTACAACATTCAAA+AGG 0.468739 1.4:+48708726 MS.gene034846:CDS
ATCCAAGGGCTGTGAACTGC+AGG 0.470105 1.4:+48709352 MS.gene034846:CDS
CTACATTGCATCTTGTGCTC+CGG 0.478921 1.4:+48708840 MS.gene034846:CDS
GCTGGAAAACAGCTTGAAGA+TGG 0.489439 1.4:+48708694 MS.gene034846:CDS
GCTATGCTCGTCTGCATCCA+AGG 0.492282 1.4:+48709337 MS.gene034846:CDS
TTGAATGTTGTAATCAGCTA+GGG 0.502461 1.4:-48708722 None:intergenic
CTTCTTTGATGGCTTTGGCT+AGG 0.506162 1.4:+48708885 MS.gene034846:CDS
ATCAAACGCTGCTGATCCGG+TGG 0.525986 1.4:-48708667 None:intergenic
CTAGCCAAAGCCATCAAAGA+AGG 0.530966 1.4:-48708884 None:intergenic
CGATAATACCACCACGAAGC+CGG 0.536405 1.4:-48708859 None:intergenic
GCTGATTACAACATTCAAAA+GGG 0.540486 1.4:+48708727 MS.gene034846:CDS
CTTGGCTTTGACATTGTCGA+TGG 0.542899 1.4:-48708553 None:intergenic
AGGAACATACTTGCGGCAGA+TGG 0.561328 1.4:-48708927 None:intergenic
GCCAAGATTCAAGACAAAGA+AGG 0.569347 1.4:+48708570 MS.gene034846:CDS
CTATGCTCGTCTGCATCCAA+GGG 0.587050 1.4:+48709338 MS.gene034846:CDS
TGATTATCCAGGTATCCCAC+CGG 0.589942 1.4:+48708651 MS.gene034846:intron
CTTGTGCTCCGGCTTCGTGG+TGG 0.646805 1.4:+48708851 MS.gene034846:CDS
TCAAACGCTGCTGATCCGGT+GGG 0.663490 1.4:-48708666 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATAAAAAAGGTGA+AGG - chr1.4:48708959-48708978 None:intergenic 15.0%
!!! TTTTATTTTTTGCTTAATTC+AGG + chr1.4:48708973-48708992 MS.gene034846:intron 15.0%
!! ATAAAAAATGCAAAATGATG+AGG - chr1.4:48708768-48708787 None:intergenic 20.0%
!!! GTGTAAAAACTATTTTACAT+TGG + chr1.4:48709274-48709293 MS.gene034846:intron 20.0%
!!! TTTGAACACGTTTAATTTTT+AGG + chr1.4:48709016-48709035 MS.gene034846:intron 20.0%
! AATGACAGGGAAAAAAAAAT+TGG - chr1.4:48709306-48709325 None:intergenic 25.0%
! ATAACATGTTGAAAGTTAGA+GGG + chr1.4:48709235-48709254 MS.gene034846:intron 25.0%
! TATAAACTAAAAACCTAGAG+TGG - chr1.4:48709418-48709437 None:intergenic 25.0%
! TATAACATGTTGAAAGTTAG+AGG + chr1.4:48709234-48709253 MS.gene034846:intron 25.0%
!! ACATCACTACATTTTTACAT+TGG + chr1.4:48709195-48709214 MS.gene034846:intron 25.0%
!! ACATTGGCATTTAAGATTAA+TGG + chr1.4:48709211-48709230 MS.gene034846:intron 25.0%
!!! CGTTTAATTTTTAGGATTCA+TGG + chr1.4:48709024-48709043 MS.gene034846:intron 25.0%
AGCATCTAACAAAAAATGAC+AGG - chr1.4:48709320-48709339 None:intergenic 30.0%
AGCTGATTACAACATTCAAA+AGG + chr1.4:48708726-48708745 MS.gene034846:CDS 30.0%
GCATCTAACAAAAAATGACA+GGG - chr1.4:48709319-48709338 None:intergenic 30.0%
GCTGATTACAACATTCAAAA+GGG + chr1.4:48708727-48708746 MS.gene034846:CDS 30.0%
GTAATCATAGGTGTTAATGT+TGG + chr1.4:48709110-48709129 MS.gene034846:intron 30.0%
TTGAATGTTGTAATCAGCTA+GGG - chr1.4:48708725-48708744 None:intergenic 30.0%
TTTGAATGTTGTAATCAGCT+AGG - chr1.4:48708726-48708745 None:intergenic 30.0%
!! TCTGACATTTTTGATTATCC+AGG + chr1.4:48708640-48708659 MS.gene034846:intron 30.0%
ACCTTCTTTGTCTTGAATCT+TGG - chr1.4:48708574-48708593 None:intergenic 35.0%
CAGACACATAGTGTAATCAT+AGG + chr1.4:48709098-48709117 MS.gene034846:intron 35.0%
TATTATCGAGCCTTCTTTGA+TGG + chr1.4:48708874-48708893 MS.gene034846:CDS 35.0%
! ATTTTCGTGAAAACCCTAAC+AGG + chr1.4:48708495-48708514 MS.gene034846:CDS 35.0%
! TTTTCGTGAAAACCCTAACA+GGG + chr1.4:48708496-48708515 MS.gene034846:CDS 35.0%
AAAAAAGGTGAAGGTTGCAG+AGG - chr1.4:48708950-48708969 None:intergenic 40.0%
AAAATCAAACGCTGCTGATC+CGG - chr1.4:48708673-48708692 None:intergenic 40.0%
AACTGCAGGAAAAAGAAGTG+TGG + chr1.4:48709366-48709385 MS.gene034846:CDS 40.0%
ACTATGTGTCTGTGCTTCAT+AGG - chr1.4:48709090-48709109 None:intergenic 40.0%
AGTAATCGTCTTCCCTGTTA+GGG - chr1.4:48708511-48708530 None:intergenic 40.0%
ATTGTTGCGTACAACTATGC+AGG + chr1.4:48709448-48709467 MS.gene034846:intron 40.0%
CATACATCATCTTGCAGTTG+AGG + chr1.4:48709493-48709512 MS.gene034846:intron 40.0%
CTCAACTGCAAGATGATGTA+TGG - chr1.4:48709495-48709514 None:intergenic 40.0%
GCCAAGATTCAAGACAAAGA+AGG + chr1.4:48708570-48708589 MS.gene034846:CDS 40.0%
AGCACAGACACTCTTGGATT+AGG - chr1.4:48709166-48709185 None:intergenic 45.0%
CTACATTGCATCTTGTGCTC+CGG + chr1.4:48708840-48708859 MS.gene034846:CDS 45.0%
CTAGCCAAAGCCATCAAAGA+AGG - chr1.4:48708887-48708906 None:intergenic 45.0%
CTATGAAGCACAGACACTCT+TGG - chr1.4:48709172-48709191 None:intergenic 45.0%
GAAAGTTAGAGGGTCGTCAT+TGG + chr1.4:48709245-48709264 MS.gene034846:intron 45.0%
GAAGTGTGGTCACAGTAATC+AGG + chr1.4:48709380-48709399 MS.gene034846:CDS 45.0%
GAGTAATCGTCTTCCCTGTT+AGG - chr1.4:48708512-48708531 None:intergenic 45.0%
GCTGGAAAACAGCTTGAAGA+TGG + chr1.4:48708694-48708713 MS.gene034846:CDS 45.0%
GTTGCAGAGGAACATACTTG+CGG - chr1.4:48708937-48708956 None:intergenic 45.0%
TGATTATCCAGGTATCCCAC+CGG + chr1.4:48708651-48708670 MS.gene034846:intron 45.0%
! GTGTGACTGATTTCCACTCT+AGG + chr1.4:48709402-48709421 MS.gene034846:intron 45.0%
!! CAAGAGTGTCTGTGCTTCAT+AGG + chr1.4:48709170-48709189 MS.gene034846:intron 45.0%
!! CAGCAGCGTTTGATTTTTGC+TGG + chr1.4:48708676-48708695 MS.gene034846:CDS 45.0%
!! CTTCTTTGATGGCTTTGGCT+AGG + chr1.4:48708885-48708904 MS.gene034846:CDS 45.0%
!! CTTGGCTTTGACATTGTCGA+TGG - chr1.4:48708556-48708575 None:intergenic 45.0%
!! CAAAAAATAAAAAATAAAAA+AGG - chr1.4:48708965-48708984 None:intergenic 5.0%
!!! AAATTTTAATTTTGATTTAT+TGG + chr1.4:48708797-48708816 MS.gene034846:intron 5.0%
AGGAACATACTTGCGGCAGA+TGG - chr1.4:48708930-48708949 None:intergenic 50.0%
CGATAATACCACCACGAAGC+CGG - chr1.4:48708862-48708881 None:intergenic 50.0%
CTATGCTCGTCTGCATCCAA+GGG + chr1.4:48709338-48709357 MS.gene034846:CDS 50.0%
! CGAGCCTTCTTTGATGGCTT+TGG + chr1.4:48708880-48708899 MS.gene034846:CDS 50.0%
! CTCTTGGATTAGGTGTGTCC+CGG - chr1.4:48709156-48709175 None:intergenic 50.0%
ACCGACGTGTATCCATCACC+GGG + chr1.4:48709135-48709154 MS.gene034846:intron 55.0%
ATCAAACGCTGCTGATCCGG+TGG - chr1.4:48708670-48708689 None:intergenic 55.0%
ATCCAAGGGCTGTGAACTGC+AGG + chr1.4:48709352-48709371 MS.gene034846:CDS 55.0%
CACCGACGTGTATCCATCAC+CGG + chr1.4:48709134-48709153 MS.gene034846:intron 55.0%
GATTAGGTGTGTCCCGGTGA+TGG - chr1.4:48709150-48709169 None:intergenic 55.0%
GCTATGCTCGTCTGCATCCA+AGG + chr1.4:48709337-48709356 MS.gene034846:CDS 55.0%
TCAAACGCTGCTGATCCGGT+GGG - chr1.4:48708669-48708688 None:intergenic 55.0%
TTCCTGCAGTTCACAGCCCT+TGG - chr1.4:48709357-48709376 None:intergenic 55.0%
!! TCCCGGTGATGGATACACGT+CGG - chr1.4:48709139-48709158 None:intergenic 55.0%
CATCTTGTGCTCCGGCTTCG+TGG + chr1.4:48708848-48708867 MS.gene034846:CDS 60.0%
TGCTGATCCGGTGGGATACC+TGG - chr1.4:48708661-48708680 None:intergenic 60.0%
CTTGTGCTCCGGCTTCGTGG+TGG + chr1.4:48708851-48708870 MS.gene034846:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 48708489 48709536 48708489 ID=MS.gene034846
chr1.4 mRNA 48708489 48709536 48708489 ID=MS.gene034846.t1;Parent=MS.gene034846
chr1.4 exon 48708489 48708591 48708489 ID=MS.gene034846.t1.exon1;Parent=MS.gene034846.t1
chr1.4 CDS 48708489 48708591 48708489 ID=cds.MS.gene034846.t1;Parent=MS.gene034846.t1
chr1.4 exon 48708662 48708748 48708662 ID=MS.gene034846.t1.exon2;Parent=MS.gene034846.t1
chr1.4 CDS 48708662 48708748 48708662 ID=cds.MS.gene034846.t1;Parent=MS.gene034846.t1
chr1.4 exon 48708837 48708939 48708837 ID=MS.gene034846.t1.exon3;Parent=MS.gene034846.t1
chr1.4 CDS 48708837 48708939 48708837 ID=cds.MS.gene034846.t1;Parent=MS.gene034846.t1
chr1.4 exon 48709335 48709401 48709335 ID=MS.gene034846.t1.exon4;Parent=MS.gene034846.t1
chr1.4 CDS 48709335 48709401 48709335 ID=cds.MS.gene034846.t1;Parent=MS.gene034846.t1
chr1.4 exon 48709510 48709536 48709510 ID=MS.gene034846.t1.exon5;Parent=MS.gene034846.t1
chr1.4 CDS 48709510 48709536 48709510 ID=cds.MS.gene034846.t1;Parent=MS.gene034846.t1
Gene Sequence

>MS.gene034846

ATGCAGATTTTCGTGAAAACCCTAACAGGGAAGACGATTACTCTCGAAGTCGAGAGTAGCGACACCATCGACAATGTCAAAGCCAAGATTCAAGACAAAGAAGGTTAAAATTCTATTAATTCTATTTATTATTTACGAATTTTCATCAATTTCTGACATTTTTGATTATCCAGGTATCCCACCGGATCAGCAGCGTTTGATTTTTGCTGGAAAACAGCTTGAAGATGGAAGAACCCTAGCTGATTACAACATTCAAAAGGGTATTTATTTCATTTACCTCATCATTTTGCATTTTTTATTCAATTTTCAAATTTTAATTTTGATTTATTGGATAAATTGATTTTGTAGAGTCTACATTGCATCTTGTGCTCCGGCTTCGTGGTGGTATTATCGAGCCTTCTTTGATGGCTTTGGCTAGGAAATACAATCAAGACAAAACCATCTGCCGCAAGTATGTTCCTCTGCAACCTTCACCTTTTTTATTTTTTATTTTTTGCTTAATTCAGGTTTATCGTTTATCTAAATGATTTGAACACGTTTAATTTTTAGGATTCATGGTATATGCACTTCAATTTAAGATAGTTTTACTTTATGACATCCTATGAAGCACAGACACATAGTGTAATCATAGGTGTTAATGTTGGACACCGACGTGTATCCATCACCGGGACACACCTAATCCAAGAGTGTCTGTGCTTCATAGGTCACATCACTACATTTTTACATTGGCATTTAAGATTAATGGTATAACATGTTGAAAGTTAGAGGGTCGTCATTGGACATCAGTGTAAAAACTATTTTACATTGGCATTTACCAATTTTTTTTTCCCTGTCATTTTTTGTTAGATGCTATGCTCGTCTGCATCCAAGGGCTGTGAACTGCAGGAAAAAGAAGTGTGGTCACAGTAATCAGGTGTGACTGATTTCCACTCTAGGTTTTTAGTTTATATAGTGTGTGAATTGTTGCGTACAACTATGCAGGACTGAAATGTAATGTTGTTTACCATACATCATCTTGCAGTTGAGGCCAAAGAAGAAGATTAAGTAG

Protein sequence

>MS.gene034846.t1

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK