Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046947.t1 | XP_003610625.1 | 96.2 | 480 | 18 | 0 | 12 | 491 | 8 | 487 | 6.80E-264 | 919.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046947.t1 | Q9LH39 | 72.3 | 470 | 127 | 3 | 2 | 470 | 10 | 477 | 1.1e-195 | 684.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046947.t1 | G7K0X5 | 96.2 | 480 | 18 | 0 | 12 | 491 | 8 | 487 | 4.9e-264 | 919.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22262 | MS.gene046947 | PPI |
| MS.gene046947 | MS.gene070082 | PPI |
| MS.gene046947 | MS.gene039946 | PPI |
| MS.gene72828 | MS.gene046947 | PPI |
| MS.gene046947 | MS.gene84987 | PPI |
| MS.gene028082 | MS.gene046947 | PPI |
| MS.gene046947 | MS.gene019112 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046947.t1 | MTR_5g005160 | 94.705 | 491 | 22 | 1 | 1 | 491 | 1 | 487 | 0.0 | 926 |
| MS.gene046947.t1 | MTR_5g026780 | 58.182 | 440 | 181 | 3 | 13 | 450 | 45 | 483 | 0.0 | 519 |
| MS.gene046947.t1 | MTR_5g026780 | 58.182 | 440 | 181 | 3 | 13 | 450 | 29 | 467 | 0.0 | 519 |
| MS.gene046947.t1 | MTR_1g112950 | 58.372 | 430 | 178 | 1 | 13 | 442 | 25 | 453 | 7.87e-180 | 512 |
| MS.gene046947.t1 | MTR_0031s0060 | 53.425 | 438 | 179 | 2 | 3 | 440 | 129 | 541 | 2.16e-164 | 480 |
| MS.gene046947.t1 | MTR_8g085630 | 49.436 | 443 | 220 | 3 | 2 | 441 | 28 | 469 | 7.01e-143 | 419 |
| MS.gene046947.t1 | MTR_5g064750 | 47.045 | 440 | 229 | 3 | 13 | 449 | 24 | 462 | 2.72e-133 | 394 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046947.t1 | AT3G19553 | 72.340 | 470 | 127 | 3 | 2 | 470 | 10 | 477 | 0.0 | 668 |
| MS.gene046947.t1 | AT1G31830 | 56.582 | 433 | 187 | 1 | 8 | 440 | 43 | 474 | 0.0 | 523 |
| MS.gene046947.t1 | AT1G31830 | 56.582 | 433 | 187 | 1 | 8 | 440 | 27 | 458 | 0.0 | 521 |
| MS.gene046947.t1 | AT5G05630 | 56.582 | 433 | 185 | 2 | 13 | 443 | 52 | 483 | 0.0 | 520 |
| MS.gene046947.t1 | AT1G31820 | 53.261 | 460 | 199 | 3 | 13 | 470 | 35 | 480 | 2.03e-167 | 481 |
| MS.gene046947.t1 | AT3G13620 | 46.771 | 449 | 231 | 5 | 9 | 452 | 25 | 470 | 2.00e-131 | 389 |
Find 111 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCGCCTTAGTCTGATTT+TGG | 0.077741 | 5.4:+374999 | None:intergenic |
| CTTTGGATATCCTCTGCTTT+TGG | 0.256985 | 5.4:-375288 | MS.gene046947:CDS |
| GCCCGTATTCCTGCTCTCTT+AGG | 0.274297 | 5.4:-375141 | MS.gene046947:CDS |
| AGAGGTAATAAGGTTAGTTT+TGG | 0.281281 | 5.4:+375495 | None:intergenic |
| ACAACGGTGGCTATGTTCTT+TGG | 0.294038 | 5.4:-375305 | MS.gene046947:CDS |
| GTTACTTCAATAACATGTTT+TGG | 0.298728 | 5.4:-374942 | MS.gene046947:CDS |
| ATTTATCTTGTACCCTATCT+TGG | 0.304077 | 5.4:-373928 | MS.gene046947:CDS |
| TAGAGCAATCAGAGGTAATA+AGG | 0.309669 | 5.4:+375485 | None:intergenic |
| CTGAAAGGTCTATAAAGATT+TGG | 0.310531 | 5.4:+374074 | None:intergenic |
| GAAGTCTCCGGCGGTCCATT+TGG | 0.336911 | 5.4:-375453 | MS.gene046947:CDS |
| TCAGCGGTGATGAGAGCTTC+AGG | 0.337698 | 5.4:+375348 | None:intergenic |
| ACTTATTCTTGTTATGTGTC+TGG | 0.338301 | 5.4:-373997 | MS.gene046947:CDS |
| TTCTTGGCTTGAACCAAGAT+AGG | 0.345537 | 5.4:+373915 | None:intergenic |
| GAAATGGTTTAGTGGTGTTA+TGG | 0.353410 | 5.4:-375235 | MS.gene046947:CDS |
| CTCAATTTCTTATATGCTAT+AGG | 0.369168 | 5.4:-374143 | MS.gene046947:CDS |
| AGAGTTCCGTTCCAAACATT+TGG | 0.378355 | 5.4:-374053 | MS.gene046947:CDS |
| GCATGGCCGCACCAAATGTT+TGG | 0.379459 | 5.4:+374042 | None:intergenic |
| GATAAAGCTAGTACTCTTGC+AGG | 0.389481 | 5.4:-374904 | MS.gene046947:CDS |
| CTCTGTAATTCAAATAAGTA+AGG | 0.394814 | 5.4:+375106 | None:intergenic |
| AAACTTTCTAGGTCTAAGTA+TGG | 0.399700 | 5.4:-374248 | MS.gene046947:intron |
| TGAGTTCCCCTCCAACTGAA+TGG | 0.407650 | 5.4:-374777 | MS.gene046947:CDS |
| TTGAGAACGTTCTTTGTAAG+TGG | 0.408514 | 5.4:-373969 | MS.gene046947:CDS |
| GAGTTCCCCTCCAACTGAAT+GGG | 0.414167 | 5.4:-374776 | MS.gene046947:CDS |
| TACAGAGGTCTTCACATTGT+TGG | 0.426683 | 5.4:-375090 | MS.gene046947:CDS |
| GCATTCAATTGATTCAGAAC+TGG | 0.430163 | 5.4:-373838 | MS.gene046947:CDS |
| ATTCCGTTGCTAGCAGGAAC+AGG | 0.431465 | 5.4:-374805 | MS.gene046947:CDS |
| GCTGAAGTCGGGATGTTGAT+TGG | 0.436679 | 5.4:-374739 | MS.gene046947:CDS |
| GATGAGCTTTCAGCAAATAC+TGG | 0.438639 | 5.4:-374171 | MS.gene046947:CDS |
| ACCTTCTTGAAAACCCCAAA+AGG | 0.445470 | 5.4:+375263 | None:intergenic |
| ACAGAATCCTCAACTCCAAA+TGG | 0.446257 | 5.4:+375438 | None:intergenic |
| CAAGACAAGACCCTCTACTT+TGG | 0.447099 | 5.4:+373723 | None:intergenic |
| TATGAGCTCACCATTGCCTA+TGG | 0.458600 | 5.4:-373784 | MS.gene046947:CDS |
| TCCCTAAGAGAGCAGGAATA+CGG | 0.463074 | 5.4:+375139 | None:intergenic |
| CGGCGGTCCATTTGGAGTTG+AGG | 0.468150 | 5.4:-375445 | MS.gene046947:CDS |
| GTTGAGGATTCTGTTAGAAC+CGG | 0.475041 | 5.4:-375429 | MS.gene046947:CDS |
| AAGAACAAAGATAACAAGAA+AGG | 0.478885 | 5.4:+375029 | None:intergenic |
| CTGTTCCCAAAATCAGACTA+AGG | 0.482200 | 5.4:-375005 | MS.gene046947:CDS |
| CTTCTTGGAATGAGCAAGAT+GGG | 0.487711 | 5.4:-374625 | MS.gene046947:CDS |
| CCCGTATTCCTGCTCTCTTA+GGG | 0.496526 | 5.4:-375140 | MS.gene046947:CDS |
| TATTTGATTCCGTTGCTAGC+AGG | 0.499339 | 5.4:-374811 | MS.gene046947:CDS |
| AAGTAATCAAGAAACAAAAC+AGG | 0.501951 | 5.4:+375198 | None:intergenic |
| GGTCCTCTTCTATCCTTACT+CGG | 0.505486 | 5.4:-375402 | MS.gene046947:CDS |
| GCCGCTGCCATGTCTAACCT+TGG | 0.505741 | 5.4:-374685 | MS.gene046947:CDS |
| ATCAATTGAATGCCAACCAT+TGG | 0.506251 | 5.4:+373848 | None:intergenic |
| GACCTTGATGAGAATACAGC+TGG | 0.509598 | 5.4:+374595 | None:intergenic |
| TTCCAGCTGTATTCTCATCA+AGG | 0.510551 | 5.4:-374597 | MS.gene046947:intron |
| CTGGAGTTATCTTCTTGTCA+TGG | 0.515465 | 5.4:-374193 | MS.gene046947:CDS |
| AGCTAGTACTCTTGCAGGGG+AGG | 0.516455 | 5.4:-374899 | MS.gene046947:CDS |
| CCCTAAGAGAGCAGGAATAC+GGG | 0.517547 | 5.4:+375140 | None:intergenic |
| AGAACAAAGATAACAAGAAA+GGG | 0.517753 | 5.4:+375030 | None:intergenic |
| TTTCTGCTTCAAACAATCCA+AGG | 0.520360 | 5.4:+374668 | None:intergenic |
| ACTTCTTGGAATGAGCAAGA+TGG | 0.526526 | 5.4:-374626 | MS.gene046947:CDS |
| CCTCCAACTGAATGGGCTGA+TGG | 0.532272 | 5.4:-374769 | MS.gene046947:CDS |
| AGCAGGAGGCAAACAAAGCA+TGG | 0.533056 | 5.4:+374025 | None:intergenic |
| CTATAGCATATAAGAAATTG+AGG | 0.538180 | 5.4:+374144 | None:intergenic |
| AACGTGATCCCTAAGAGAGC+AGG | 0.540767 | 5.4:+375132 | None:intergenic |
| CAGGAATACGGGCTAGCATA+CGG | 0.541359 | 5.4:+375151 | None:intergenic |
| CTAATCTTCTACGAAGTCTC+CGG | 0.544287 | 5.4:-375465 | MS.gene046947:CDS |
| CCATCAGCCCATTCAGTTGG+AGG | 0.547465 | 5.4:+374769 | None:intergenic |
| GAGAATAAAATGCTAATAGT+CGG | 0.552107 | 5.4:+374221 | None:intergenic |
| TCTTGGCTTGAACCAAGATA+GGG | 0.561433 | 5.4:+373916 | None:intergenic |
| CTCAACTCCAAATGGACCGC+CGG | 0.561696 | 5.4:+375446 | None:intergenic |
| TAACCATCAGCCCATTCAGT+TGG | 0.562028 | 5.4:+374766 | None:intergenic |
| CATCAGCCCATTCAGTTGGA+GGG | 0.563433 | 5.4:+374770 | None:intergenic |
| GAACATAGCCACCGTTGTGA+GGG | 0.565973 | 5.4:+375310 | None:intergenic |
| GACAATTCTTCTTCCACCAT+AGG | 0.566948 | 5.4:+373768 | None:intergenic |
| GTTTGGAACGGAACTCTGAA+AGG | 0.570334 | 5.4:+374059 | None:intergenic |
| TCAATTGATTCAGAACTGGT+TGG | 0.570609 | 5.4:-373834 | MS.gene046947:CDS |
| TGTCATCACCTTCCAATGGT+TGG | 0.570626 | 5.4:-373860 | MS.gene046947:CDS |
| GTGGTTCTAATCCAAAGTAG+AGG | 0.573793 | 5.4:-373734 | None:intergenic |
| ATAAAGCTAGTACTCTTGCA+GGG | 0.574835 | 5.4:-374903 | MS.gene046947:CDS |
| AGTGGAGCAGTAGTAATCGT+TGG | 0.575855 | 5.4:-373951 | MS.gene046947:CDS |
| CCTTCTTGAAAACCCCAAAA+GGG | 0.576626 | 5.4:+375264 | None:intergenic |
| ACTAAGGCGATGGTTTGTTG+TGG | 0.579545 | 5.4:-374989 | MS.gene046947:CDS |
| ATCAGCCCATTCAGTTGGAG+GGG | 0.581194 | 5.4:+374771 | None:intergenic |
| TCTTCTTCCACCATAGGCAA+TGG | 0.581759 | 5.4:+373774 | None:intergenic |
| CAGCGGTGATGAGAGCTTCA+GGG | 0.582358 | 5.4:+375349 | None:intergenic |
| ACAAGAATAAGTAACAAAGC+AGG | 0.582392 | 5.4:+374008 | None:intergenic |
| CCAAAATCAGACTAAGGCGA+TGG | 0.584574 | 5.4:-374999 | MS.gene046947:CDS |
| AAGGTTAGACATGGCAGCGG+CGG | 0.595108 | 5.4:+374687 | None:intergenic |
| AGAACATAGCCACCGTTGTG+AGG | 0.595254 | 5.4:+375309 | None:intergenic |
| ACTGGTTGGCCATGAAAACA+AGG | 0.596054 | 5.4:-373820 | MS.gene046947:CDS |
| GAAGTCGGGATGTTGATTGG+TGG | 0.598630 | 5.4:-374736 | MS.gene046947:CDS |
| TCCGTTCCAAACATTTGGTG+CGG | 0.599230 | 5.4:-374048 | MS.gene046947:CDS |
| TTTAATAACGTCAATTGGCG+TGG | 0.601030 | 5.4:-374964 | MS.gene046947:CDS |
| AAATTGGTTACTGTTTGAAG+CGG | 0.601450 | 5.4:-373889 | MS.gene046947:CDS |
| GAATTGTCTTTAATGCAAAG+TGG | 0.601773 | 5.4:-373753 | MS.gene046947:CDS |
| TCTGTAATTCAAATAAGTAA+GGG | 0.601990 | 5.4:+375107 | None:intergenic |
| ATTGAATGCCAACCATTGGA+AGG | 0.602235 | 5.4:+373852 | None:intergenic |
| CTTACTTATTTGAATTACAG+AGG | 0.605159 | 5.4:-375105 | MS.gene046947:CDS |
| GCCGCACCAAATGTTTGGAA+CGG | 0.607396 | 5.4:+374047 | None:intergenic |
| GAGCTCACCATTGCCTATGG+TGG | 0.608182 | 5.4:-373781 | MS.gene046947:CDS |
| GATTCTGTTAGAACCGGCGG+TGG | 0.609699 | 5.4:-375423 | MS.gene046947:CDS |
| GCACCTGTTCCTGCTAGCAA+CGG | 0.624624 | 5.4:+374802 | None:intergenic |
| TCAGGGACACTCCAAATGAG+AGG | 0.625273 | 5.4:+375366 | None:intergenic |
| AAGCCGAGTAAGGATAGAAG+AGG | 0.626094 | 5.4:+375399 | None:intergenic |
| TCCAAGGTTAGACATGGCAG+CGG | 0.631162 | 5.4:+374684 | None:intergenic |
| CAGGGACACTCCAAATGAGA+GGG | 0.634528 | 5.4:+375367 | None:intergenic |
| CAACTGTCATCACCTTCCAA+TGG | 0.639749 | 5.4:-373864 | MS.gene046947:CDS |
| GGATAGAAGAGGACCACCGC+CGG | 0.641963 | 5.4:+375410 | None:intergenic |
| GAGGATTCTGTTAGAACCGG+CGG | 0.644182 | 5.4:-375426 | MS.gene046947:CDS |
| TAGAAGATTAGAGCAATCAG+AGG | 0.645302 | 5.4:+375477 | None:intergenic |
| ATCTTCTACGAAGTCTCCGG+CGG | 0.650130 | 5.4:-375462 | MS.gene046947:CDS |
| AGAATAAGTAACAAAGCAGG+AGG | 0.650240 | 5.4:+374011 | None:intergenic |
| GAAAGTAGTGGCGAGTTCAG+CGG | 0.650242 | 5.4:+375332 | None:intergenic |
| AAACAATCCAAGGTTAGACA+TGG | 0.651742 | 5.4:+374678 | None:intergenic |
| CCAAAAGGGACCAAAAGCAG+AGG | 0.661685 | 5.4:+375278 | None:intergenic |
| TAAAGCTAGTACTCTTGCAG+GGG | 0.671467 | 5.4:-374902 | MS.gene046947:CDS |
| GCCACTACTTTCCCTCACAA+CGG | 0.683972 | 5.4:-375321 | MS.gene046947:CDS |
| ACCGTTGTGAGGGAAAGTAG+TGG | 0.687593 | 5.4:+375320 | None:intergenic |
| ACTACTTTCCCTCACAACGG+TGG | 0.702831 | 5.4:-375318 | MS.gene046947:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTGGAATTTAAATTATT+GGG | - | chr5.4:374339-374358 | MS.gene046947:intron | 15.0% |
| !!! | TGTTTTGGAATTTAAATTAT+TGG | - | chr5.4:374338-374357 | MS.gene046947:intron | 15.0% |
| !! | TAGATTGTATATAAGCAATA+TGG | - | chr5.4:374818-374837 | MS.gene046947:CDS | 20.0% |
| !! | TATTAATTGCTTGAACAAAA+AGG | - | chr5.4:374963-374982 | MS.gene046947:CDS | 20.0% |
| !! | TCTGTAATTCAAATAAGTAA+GGG | + | chr5.4:374161-374180 | None:intergenic | 20.0% |
| !!! | ATCTGTTTTGAAAAAATAGA+TGG | - | chr5.4:374843-374862 | MS.gene046947:CDS | 20.0% |
| ! | AAAGGGTAAAAGTGAAAAAA+TGG | + | chr5.4:374221-374240 | None:intergenic | 25.0% |
| ! | AAGAACAAAGATAACAAGAA+AGG | + | chr5.4:374239-374258 | None:intergenic | 25.0% |
| ! | AAGTAATCAAGAAACAAAAC+AGG | + | chr5.4:374070-374089 | None:intergenic | 25.0% |
| ! | AGAACAAAGATAACAAGAAA+GGG | + | chr5.4:374238-374257 | None:intergenic | 25.0% |
| ! | ATTTGAACTTCATCCTTAAA+GGG | - | chr5.4:374869-374888 | MS.gene046947:CDS | 25.0% |
| ! | CTATAGCATATAAGAAATTG+AGG | + | chr5.4:375124-375143 | None:intergenic | 25.0% |
| ! | CTCAATTTCTTATATGCTAT+AGG | - | chr5.4:375122-375141 | MS.gene046947:CDS | 25.0% |
| ! | CTCTGTAATTCAAATAAGTA+AGG | + | chr5.4:374162-374181 | None:intergenic | 25.0% |
| ! | CTTACTTATTTGAATTACAG+AGG | - | chr5.4:374160-374179 | MS.gene046947:CDS | 25.0% |
| ! | GAGAATAAAATGCTAATAGT+CGG | + | chr5.4:375047-375066 | None:intergenic | 25.0% |
| ! | TAAAAGAAAGATACCATACA+AGG | + | chr5.4:374796-374815 | None:intergenic | 25.0% |
| ! | TTCAAGCCAAGAATAAAAAT+TGG | - | chr5.4:375360-375379 | MS.gene046947:CDS | 25.0% |
| !! | CAGTAACCAATTTTTATTCT+TGG | + | chr5.4:375369-375388 | None:intergenic | 25.0% |
| !! | GTTACTTCAATAACATGTTT+TGG | - | chr5.4:374323-374342 | MS.gene046947:intron | 25.0% |
| !!! | TGGATTTTAATAACGTCAAT+TGG | - | chr5.4:374296-374315 | MS.gene046947:intron | 25.0% |
| !!! | TTTAGTTTCATTTTCTACCT+AGG | + | chr5.4:374743-374762 | None:intergenic | 25.0% |
| AAACTTTCTAGGTCTAAGTA+TGG | - | chr5.4:375017-375036 | MS.gene046947:CDS | 30.0% | |
| AAATTGGTTACTGTTTGAAG+CGG | - | chr5.4:375376-375395 | MS.gene046947:CDS | 30.0% | |
| ACAAGAATAAGTAACAAAGC+AGG | + | chr5.4:375260-375279 | None:intergenic | 30.0% | |
| ATTTATCTTGTACCCTATCT+TGG | - | chr5.4:375337-375356 | MS.gene046947:CDS | 30.0% | |
| CATACGGTTAAAAATAGGAA+AGG | + | chr5.4:374101-374120 | None:intergenic | 30.0% | |
| CTGAAAGGTCTATAAAGATT+TGG | + | chr5.4:375194-375213 | None:intergenic | 30.0% | |
| GAATTGTCTTTAATGCAAAG+TGG | - | chr5.4:375512-375531 | MS.gene046947:CDS | 30.0% | |
| GATTTGAACTTCATCCTTAA+AGG | - | chr5.4:374868-374887 | MS.gene046947:CDS | 30.0% | |
| TGTGGTACTATAAACTTTCT+AGG | - | chr5.4:375006-375025 | MS.gene046947:CDS | 30.0% | |
| TTTGAACTTCATCCTTAAAG+GGG | - | chr5.4:374870-374889 | MS.gene046947:CDS | 30.0% | |
| ! | ACTTATTCTTGTTATGTGTC+TGG | - | chr5.4:375268-375287 | MS.gene046947:CDS | 30.0% |
| !! | TTCAAGAAGGTTTTTGGAAA+TGG | - | chr5.4:374014-374033 | MS.gene046947:CDS | 30.0% |
| !!! | AGAGGTAATAAGGTTAGTTT+TGG | + | chr5.4:373773-373792 | None:intergenic | 30.0% |
| AAACAATCCAAGGTTAGACA+TGG | + | chr5.4:374590-374609 | None:intergenic | 35.0% | |
| AAAGATACCATACAAGGAGA+GGG | + | chr5.4:374790-374809 | None:intergenic | 35.0% | |
| ACAGTGATCTAACATTGATG+TGG | - | chr5.4:374988-375007 | MS.gene046947:CDS | 35.0% | |
| ACCACTCACTTAAGACTAAA+TGG | + | chr5.4:374919-374938 | None:intergenic | 35.0% | |
| AGAATAAGTAACAAAGCAGG+AGG | + | chr5.4:375257-375276 | None:intergenic | 35.0% | |
| ATAAAGCTAGTACTCTTGCA+GGG | - | chr5.4:374362-374381 | MS.gene046947:intron | 35.0% | |
| ATCAATTGAATGCCAACCAT+TGG | + | chr5.4:375420-375439 | None:intergenic | 35.0% | |
| CTCACTTAAGACTAAATGGT+AGG | + | chr5.4:374915-374934 | None:intergenic | 35.0% | |
| GCTAGCATACGGTTAAAAAT+AGG | + | chr5.4:374106-374125 | None:intergenic | 35.0% | |
| TAGAAGATTAGAGCAATCAG+AGG | + | chr5.4:373791-373810 | None:intergenic | 35.0% | |
| TAGAGCAATCAGAGGTAATA+AGG | + | chr5.4:373783-373802 | None:intergenic | 35.0% | |
| TTGAGAACGTTCTTTGTAAG+TGG | - | chr5.4:375296-375315 | MS.gene046947:CDS | 35.0% | |
| TTTAATAACGTCAATTGGCG+TGG | - | chr5.4:374301-374320 | MS.gene046947:intron | 35.0% | |
| TTTCTGCTTCAAACAATCCA+AGG | + | chr5.4:374600-374619 | None:intergenic | 35.0% | |
| ! | AGCATTTTATTCTCTGCAAC+TGG | - | chr5.4:375053-375072 | MS.gene046947:CDS | 35.0% |
| ! | AGTGATGCTTTTCAACTTCT+TGG | - | chr5.4:374625-374644 | MS.gene046947:CDS | 35.0% |
| ! | GAAATGGTTTAGTGGTGTTA+TGG | - | chr5.4:374030-374049 | MS.gene046947:CDS | 35.0% |
| ! | GCATTCAATTGATTCAGAAC+TGG | - | chr5.4:375427-375446 | MS.gene046947:CDS | 35.0% |
| ! | TCAATTGATTCAGAACTGGT+TGG | - | chr5.4:375431-375450 | MS.gene046947:CDS | 35.0% |
| ! | TCTTCTTTTTCCCTCTCATT+TGG | - | chr5.4:373888-373907 | MS.gene046947:CDS | 35.0% |
| !! | ACCATTTAGTCTTAAGTGAG+TGG | - | chr5.4:374915-374934 | MS.gene046947:CDS | 35.0% |
| !! | ATGGTTATTTTGCTGAAGTC+GGG | - | chr5.4:374515-374534 | MS.gene046947:intron | 35.0% |
| !! | GATGGTTATTTTGCTGAAGT+CGG | - | chr5.4:374514-374533 | MS.gene046947:intron | 35.0% |
| !! | GGTTTTTGGAAATGGTTTAG+TGG | - | chr5.4:374022-374041 | MS.gene046947:CDS | 35.0% |
| ACAGAATCCTCAACTCCAAA+TGG | + | chr5.4:373830-373849 | None:intergenic | 40.0% | |
| ACCTTCTTGAAAACCCCAAA+AGG | + | chr5.4:374005-374024 | None:intergenic | 40.0% | |
| ACTTCTTGGAATGAGCAAGA+TGG | - | chr5.4:374639-374658 | MS.gene046947:CDS | 40.0% | |
| AGAGTTCCGTTCCAAACATT+TGG | - | chr5.4:375212-375231 | MS.gene046947:CDS | 40.0% | |
| ATACCCTCTTTCTCTTTCCT+AGG | - | chr5.4:374723-374742 | MS.gene046947:CDS | 40.0% | |
| ATTGAATGCCAACCATTGGA+AGG | + | chr5.4:375416-375435 | None:intergenic | 40.0% | |
| CCTTCTTGAAAACCCCAAAA+GGG | + | chr5.4:374004-374023 | None:intergenic | 40.0% | |
| CTAATCTTCTACGAAGTCTC+CGG | - | chr5.4:373800-373819 | MS.gene046947:CDS | 40.0% | |
| CTACCTAGGAAAGAGAAAGA+GGG | + | chr5.4:374729-374748 | None:intergenic | 40.0% | |
| CTGGAGTTATCTTCTTGTCA+TGG | - | chr5.4:375072-375091 | MS.gene046947:CDS | 40.0% | |
| CTGTTCCCAAAATCAGACTA+AGG | - | chr5.4:374260-374279 | MS.gene046947:intron | 40.0% | |
| CTTCTTGGAATGAGCAAGAT+GGG | - | chr5.4:374640-374659 | MS.gene046947:CDS | 40.0% | |
| GAAAAAGAAGAAGCCGAGTA+AGG | + | chr5.4:373879-373898 | None:intergenic | 40.0% | |
| GAAAGATACCATACAAGGAG+AGG | + | chr5.4:374791-374810 | None:intergenic | 40.0% | |
| GACAATTCTTCTTCCACCAT+AGG | + | chr5.4:375500-375519 | None:intergenic | 40.0% | |
| GATAAAGCTAGTACTCTTGC+AGG | - | chr5.4:374361-374380 | MS.gene046947:intron | 40.0% | |
| GATGAGCTTTCAGCAAATAC+TGG | - | chr5.4:375094-375113 | MS.gene046947:CDS | 40.0% | |
| GTTGAGGATTCTGTTAGAAC+CGG | - | chr5.4:373836-373855 | MS.gene046947:CDS | 40.0% | |
| TAAAGCTAGTACTCTTGCAG+GGG | - | chr5.4:374363-374382 | MS.gene046947:intron | 40.0% | |
| TACAGAGGTCTTCACATTGT+TGG | - | chr5.4:374175-374194 | MS.gene046947:CDS | 40.0% | |
| TATTTGATTCCGTTGCTAGC+AGG | - | chr5.4:374454-374473 | MS.gene046947:intron | 40.0% | |
| TCCACTACAAATCCCCTTTA+AGG | + | chr5.4:374885-374904 | None:intergenic | 40.0% | |
| TCCTTAAAGGGGATTTGTAG+TGG | - | chr5.4:374881-374900 | MS.gene046947:CDS | 40.0% | |
| TCTACCTAGGAAAGAGAAAG+AGG | + | chr5.4:374730-374749 | None:intergenic | 40.0% | |
| TTCCAGCTGTATTCTCATCA+AGG | - | chr5.4:374668-374687 | MS.gene046947:CDS | 40.0% | |
| ! | CATCGCCTTAGTCTGATTTT+GGG | + | chr5.4:374268-374287 | None:intergenic | 40.0% |
| ! | CTTTGGATATCCTCTGCTTT+TGG | - | chr5.4:373977-373996 | MS.gene046947:CDS | 40.0% |
| ! | GCTTTCGGAAACGTTTTACT+TGG | + | chr5.4:374400-374419 | None:intergenic | 40.0% |
| ! | TCTTGGCTTGAACCAAGATA+GGG | + | chr5.4:375352-375371 | None:intergenic | 40.0% |
| ! | TTCTTGGCTTGAACCAAGAT+AGG | + | chr5.4:375353-375372 | None:intergenic | 40.0% |
| !! | CAAAAGCATCCCCCAAAAAA+GGG | + | chr5.4:374422-374441 | None:intergenic | 40.0% |
| !! | GGATGTTGATTGGTGGTTTT+TGG | - | chr5.4:374536-374555 | MS.gene046947:intron | 40.0% |
| !! | GGGGTTTTCAAGAAGGTTTT+TGG | - | chr5.4:374008-374027 | MS.gene046947:CDS | 40.0% |
| !!! | GTGGTTTTTGGCTTAAACTG+TGG | - | chr5.4:374548-374567 | MS.gene046947:intron | 40.0% |
| !!! | GTTTCCGAAAGCCCTTTTTT+GGG | - | chr5.4:374408-374427 | MS.gene046947:intron | 40.0% |
| !!! | TTTCCGAAAGCCCTTTTTTG+GGG | - | chr5.4:374409-374428 | MS.gene046947:intron | 40.0% |
| AAGCCGAGTAAGGATAGAAG+AGG | + | chr5.4:373869-373888 | None:intergenic | 45.0% | |
| ACAACGGTGGCTATGTTCTT+TGG | - | chr5.4:373960-373979 | MS.gene046947:CDS | 45.0% | |
| AGTGGAGCAGTAGTAATCGT+TGG | - | chr5.4:375314-375333 | MS.gene046947:CDS | 45.0% | |
| ATCCCCCAAAAAAGGGCTTT+CGG | + | chr5.4:374415-374434 | None:intergenic | 45.0% | |
| CAACTGTCATCACCTTCCAA+TGG | - | chr5.4:375401-375420 | MS.gene046947:CDS | 45.0% | |
| CCAAAATCAGACTAAGGCGA+TGG | - | chr5.4:374266-374285 | MS.gene046947:intron | 45.0% | |
| GACCTTGATGAGAATACAGC+TGG | + | chr5.4:374673-374692 | None:intergenic | 45.0% | |
| GGTCCTCTTCTATCCTTACT+CGG | - | chr5.4:373863-373882 | MS.gene046947:CDS | 45.0% | |
| TAACCATCAGCCCATTCAGT+TGG | + | chr5.4:374502-374521 | None:intergenic | 45.0% | |
| TATGAGCTCACCATTGCCTA+TGG | - | chr5.4:375481-375500 | MS.gene046947:CDS | 45.0% | |
| TCCCTAAGAGAGCAGGAATA+CGG | + | chr5.4:374129-374148 | None:intergenic | 45.0% | |
| TCTTCTTCCACCATAGGCAA+TGG | + | chr5.4:375494-375513 | None:intergenic | 45.0% | |
| TGTCATCACCTTCCAATGGT+TGG | - | chr5.4:375405-375424 | MS.gene046947:CDS | 45.0% | |
| TGTGATACCCTCTCCTTGTA+TGG | - | chr5.4:374780-374799 | MS.gene046947:CDS | 45.0% | |
| ! | ACTGGTTGGCCATGAAAACA+AGG | - | chr5.4:375445-375464 | MS.gene046947:CDS | 45.0% |
| ! | CCATCGCCTTAGTCTGATTT+TGG | + | chr5.4:374269-374288 | None:intergenic | 45.0% |
| ! | GTTTGGAACGGAACTCTGAA+AGG | + | chr5.4:375209-375228 | None:intergenic | 45.0% |
| ! | TCCGTTCCAAACATTTGGTG+CGG | - | chr5.4:375217-375236 | MS.gene046947:CDS | 45.0% |
| !! | ACTAAGGCGATGGTTTGTTG+TGG | - | chr5.4:374276-374295 | MS.gene046947:intron | 45.0% |
| !! | CCAAAAGCATCCCCCAAAAA+AGG | + | chr5.4:374423-374442 | None:intergenic | 45.0% |
| !! | CTCTGCTTTTGGTCCCTTTT+GGG | - | chr5.4:373988-374007 | MS.gene046947:CDS | 45.0% |
| !! | TCTGCTTTTGGTCCCTTTTG+GGG | - | chr5.4:373989-374008 | MS.gene046947:CDS | 45.0% |
| !! | TTTTTGGGGGATGCTTTTGG+TGG | - | chr5.4:374423-374442 | MS.gene046947:intron | 45.0% |
| !!! | CCCTTTTGGGGTTTTCAAGA+AGG | - | chr5.4:374001-374020 | MS.gene046947:CDS | 45.0% |
| !!! | CCTTTTTTGGGGGATGCTTT+TGG | - | chr5.4:374420-374439 | MS.gene046947:intron | 45.0% |
| !!! | CGTTTCCGAAAGCCCTTTTT+TGG | - | chr5.4:374407-374426 | MS.gene046947:intron | 45.0% |
| !!! | GCTCTGTGTCCTTGTTTTCA+TGG | + | chr5.4:375457-375476 | None:intergenic | 45.0% |
| !!! | TTCCGAAAGCCCTTTTTTGG+GGG | - | chr5.4:374410-374429 | MS.gene046947:intron | 45.0% |
| AACGTGATCCCTAAGAGAGC+AGG | + | chr5.4:374136-374155 | None:intergenic | 50.0% | |
| ACCGTTGTGAGGGAAAGTAG+TGG | + | chr5.4:373948-373967 | None:intergenic | 50.0% | |
| ACTACTTTCCCTCACAACGG+TGG | - | chr5.4:373947-373966 | MS.gene046947:CDS | 50.0% | |
| AGAACATAGCCACCGTTGTG+AGG | + | chr5.4:373959-373978 | None:intergenic | 50.0% | |
| AGCAGGAGGCAAACAAAGCA+TGG | + | chr5.4:375243-375262 | None:intergenic | 50.0% | |
| ATCAGCCCATTCAGTTGGAG+GGG | + | chr5.4:374497-374516 | None:intergenic | 50.0% | |
| ATCTTCTACGAAGTCTCCGG+CGG | - | chr5.4:373803-373822 | MS.gene046947:CDS | 50.0% | |
| ATTCCGTTGCTAGCAGGAAC+AGG | - | chr5.4:374460-374479 | MS.gene046947:intron | 50.0% | |
| CAGGGACACTCCAAATGAGA+GGG | + | chr5.4:373901-373920 | None:intergenic | 50.0% | |
| CATCAGCCCATTCAGTTGGA+GGG | + | chr5.4:374498-374517 | None:intergenic | 50.0% | |
| CCAAAAGGGACCAAAAGCAG+AGG | + | chr5.4:373990-374009 | None:intergenic | 50.0% | |
| CCCGTATTCCTGCTCTCTTA+GGG | - | chr5.4:374125-374144 | MS.gene046947:CDS | 50.0% | |
| CCCTAAGAGAGCAGGAATAC+GGG | + | chr5.4:374128-374147 | None:intergenic | 50.0% | |
| GAAAGTAGTGGCGAGTTCAG+CGG | + | chr5.4:373936-373955 | None:intergenic | 50.0% | |
| GAACATAGCCACCGTTGTGA+GGG | + | chr5.4:373958-373977 | None:intergenic | 50.0% | |
| GAGGATTCTGTTAGAACCGG+CGG | - | chr5.4:373839-373858 | MS.gene046947:CDS | 50.0% | |
| GAGTTCCCCTCCAACTGAAT+GGG | - | chr5.4:374489-374508 | MS.gene046947:intron | 50.0% | |
| GCCACTACTTTCCCTCACAA+CGG | - | chr5.4:373944-373963 | MS.gene046947:CDS | 50.0% | |
| GCCGCACCAAATGTTTGGAA+CGG | + | chr5.4:375221-375240 | None:intergenic | 50.0% | |
| GCTGAAGTCGGGATGTTGAT+TGG | - | chr5.4:374526-374545 | MS.gene046947:intron | 50.0% | |
| TCAGGGACACTCCAAATGAG+AGG | + | chr5.4:373902-373921 | None:intergenic | 50.0% | |
| TCCAAGGTTAGACATGGCAG+CGG | + | chr5.4:374584-374603 | None:intergenic | 50.0% | |
| TGAGTTCCCCTCCAACTGAA+TGG | - | chr5.4:374488-374507 | MS.gene046947:intron | 50.0% | |
| ! | GAAGTCGGGATGTTGATTGG+TGG | - | chr5.4:374529-374548 | MS.gene046947:intron | 50.0% |
| !! | CAGGAATACGGGCTAGCATA+CGG | + | chr5.4:374117-374136 | None:intergenic | 50.0% |
| !! | CCTCTGCTTTTGGTCCCTTT+TGG | - | chr5.4:373987-374006 | MS.gene046947:CDS | 50.0% |
| AAGGTTAGACATGGCAGCGG+CGG | + | chr5.4:374581-374600 | None:intergenic | 55.0% | |
| AGCTAGTACTCTTGCAGGGG+AGG | - | chr5.4:374366-374385 | MS.gene046947:intron | 55.0% | |
| CAGCGGTGATGAGAGCTTCA+GGG | + | chr5.4:373919-373938 | None:intergenic | 55.0% | |
| CCATCAGCCCATTCAGTTGG+AGG | + | chr5.4:374499-374518 | None:intergenic | 55.0% | |
| CTCAACTCCAAATGGACCGC+CGG | + | chr5.4:373822-373841 | None:intergenic | 55.0% | |
| GAGCTCACCATTGCCTATGG+TGG | - | chr5.4:375484-375503 | MS.gene046947:CDS | 55.0% | |
| GATTCTGTTAGAACCGGCGG+TGG | - | chr5.4:373842-373861 | MS.gene046947:CDS | 55.0% | |
| GCACCTGTTCCTGCTAGCAA+CGG | + | chr5.4:374466-374485 | None:intergenic | 55.0% | |
| GCATGGCCGCACCAAATGTT+TGG | + | chr5.4:375226-375245 | None:intergenic | 55.0% | |
| GCCCGTATTCCTGCTCTCTT+AGG | - | chr5.4:374124-374143 | MS.gene046947:CDS | 55.0% | |
| TCAGCGGTGATGAGAGCTTC+AGG | + | chr5.4:373920-373939 | None:intergenic | 55.0% | |
| !! | CCTCCAACTGAATGGGCTGA+TGG | - | chr5.4:374496-374515 | MS.gene046947:intron | 55.0% |
| GAAGTCTCCGGCGGTCCATT+TGG | - | chr5.4:373812-373831 | MS.gene046947:CDS | 60.0% | |
| GCCGCTGCCATGTCTAACCT+TGG | - | chr5.4:374580-374599 | MS.gene046947:intron | 60.0% | |
| GGATAGAAGAGGACCACCGC+CGG | + | chr5.4:373858-373877 | None:intergenic | 60.0% | |
| ! | CGGCGGTCCATTTGGAGTTG+AGG | - | chr5.4:373820-373839 | MS.gene046947:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 373737 | 375550 | 373737 | ID=MS.gene046947 |
| chr5.4 | mRNA | 373737 | 375550 | 373737 | ID=MS.gene046947.t1;Parent=MS.gene046947 |
| chr5.4 | exon | 374598 | 375550 | 374598 | ID=MS.gene046947.t1.exon1;Parent=MS.gene046947.t1 |
| chr5.4 | CDS | 374598 | 375550 | 374598 | ID=cds.MS.gene046947.t1;Parent=MS.gene046947.t1 |
| chr5.4 | exon | 373737 | 374259 | 373737 | ID=MS.gene046947.t1.exon2;Parent=MS.gene046947.t1 |
| chr5.4 | CDS | 373737 | 374259 | 373737 | ID=cds.MS.gene046947.t1;Parent=MS.gene046947.t1 |
| Gene Sequence |
| Protein sequence |
