AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048276

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048276.t1 MTR_2g027390 96.528 432 11 2 1 428 1 432 0.0 839
MS.gene048276.t1 MTR_7g017500 39.474 114 66 3 93 205 149 260 2.34e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048276.t1 AT5G47790 58.508 429 116 8 1 428 1 368 7.16e-162 461
MS.gene048276.t1 AT5G38840 39.640 111 64 3 96 205 93 201 5.15e-19 90.1

Find 125 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTGTATATGTAATTGATT+TGG 0.192768 2.3:-61974347 MS.gene048276:CDS
TTGGAACCGTTCTCTGTTAA+TGG 0.193902 2.3:-61975151 MS.gene048276:CDS
GGTGCTAGATAGGATTAATT+TGG 0.279458 2.3:-61974852 MS.gene048276:CDS
AGAAGATGAGAGTTTCATTC+AGG 0.291478 2.3:-61973985 MS.gene048276:CDS
AGTGGAGGCGGCTCCGTTGT+TGG 0.292771 2.3:-61974990 MS.gene048276:CDS
GTGGAGGCGGCTCCGTTGTT+GGG 0.315269 2.3:-61974989 MS.gene048276:CDS
GTTTAAGAAAGCCGAGAGTT+TGG 0.325196 2.3:-61975170 MS.gene048276:CDS
ACTACCAAGCTCAGTGGATT+TGG 0.351010 2.3:+61974063 None:intergenic
GGGATTTACGATGACCTATA+TGG 0.356648 2.3:-61973716 MS.gene048276:CDS
GAGGACTGCCCTTTCCCCTT+TGG 0.357778 2.3:+61973824 None:intergenic
TTTCATTCAGGGATCAGGTT+GGG 0.361537 2.3:-61973973 MS.gene048276:CDS
AGTGTATATGTAATTGATTT+GGG 0.362845 2.3:-61974346 MS.gene048276:CDS
GAGGATGATGATGATTTGTT+TGG 0.370753 2.3:-61973563 MS.gene048276:CDS
CCCTCGTCCTTCACCACCCA+CGG 0.373388 2.3:-61974188 MS.gene048276:CDS
CTTCCTTCCTTAACACCAAC+TGG 0.386824 2.3:+61973890 None:intergenic
GAAGAACATCTGGTCTTGAT+AGG 0.392084 2.3:-61975192 MS.gene048276:CDS
ACCTGGTCCAGTTGGTGTTA+AGG 0.396500 2.3:-61973897 MS.gene048276:CDS
TTCATTCAGGGATCAGGTTG+GGG 0.397217 2.3:-61973972 MS.gene048276:CDS
CGCGGCTCAATCGCCCAATC+TGG 0.397896 2.3:+61974914 None:intergenic
TGTAATTTGAAGAGAATGTA+TGG 0.407152 2.3:-61975214 None:intergenic
GGAGAGTTAGTTGAGGTTGT+TGG 0.408959 2.3:-61973950 MS.gene048276:CDS
TAAGGTAGTTGGTCATTCTT+CGG 0.414880 2.3:-61975092 MS.gene048276:CDS
TCTTAGCAGCTCTTTCTGAT+TGG 0.422101 2.3:+61974014 None:intergenic
TCCGATGGGTCAGGAGGTGG+TGG 0.423621 2.3:+61974154 None:intergenic
TCTCCATTCTCCTTAGCTGC+TGG 0.430224 2.3:+61973626 None:intergenic
GTTGTTGGGGCAGAATCAAC+AGG 0.433225 2.3:-61974975 MS.gene048276:CDS
GAGAGTTTCATTCAGGGATC+AGG 0.440722 2.3:-61973978 MS.gene048276:CDS
AGGATGGTCAGGTGCTAGAT+AGG 0.444081 2.3:-61974862 MS.gene048276:CDS
GATGTGGCAGCCACCAGATT+GGG 0.444291 2.3:-61974927 MS.gene048276:CDS
AATACGCTGCTGAATCGTTA+TGG 0.447922 2.3:-61974109 MS.gene048276:CDS
CAAGCACAAAATCACAAGTC+TGG 0.448208 2.3:+61974798 None:intergenic
GCCTCTTCATCCGATGGGTC+AGG 0.453710 2.3:+61974145 None:intergenic
AGAATGTATGGAAGAACATC+TGG 0.453804 2.3:-61975202 MS.gene048276:CDS
CTGTAATTCCAAAGGGGAAA+GGG 0.464451 2.3:-61973832 MS.gene048276:CDS
CAAACTACTGTAATTCCAAA+GGG 0.471274 2.3:-61973839 MS.gene048276:CDS
AAACTCAACAGGTGAATCCT+TGG 0.474394 2.3:+61974285 None:intergenic
CGATGTGGCAGCCACCAGAT+TGG 0.476461 2.3:-61974928 MS.gene048276:CDS
TCCTTAACACCAACTGGACC+AGG 0.478092 2.3:+61973896 None:intergenic
GCGCCAGCAGCTAAGGAGAA+TGG 0.478653 2.3:-61973629 MS.gene048276:CDS
CCTCGTCCTTCACCACCCAC+GGG 0.483891 2.3:-61974187 MS.gene048276:CDS
TGTCCCACTTCAAACTCAAC+AGG 0.484199 2.3:+61974274 None:intergenic
CTGTCAAAGTTGGATCAGCC+TGG 0.486875 2.3:-61973682 MS.gene048276:CDS
TTGATCCCCGTGGGTGGTGA+AGG 0.486979 2.3:+61974181 None:intergenic
AGGATGATGATGATTTGTTT+GGG 0.488049 2.3:-61973562 MS.gene048276:CDS
TCCTCGTAATCAGCAATGCT+TGG 0.489223 2.3:+61973581 None:intergenic
GAATCATTATCTGTCAAAGT+TGG 0.489351 2.3:-61973692 MS.gene048276:CDS
CAGATAATGATTCTCCATAT+AGG 0.494590 2.3:+61973702 None:intergenic
GGAAGTTATGAAGGATGGTC+AGG 0.495075 2.3:-61974873 MS.gene048276:CDS
TGGAGGCGGCTCCGTTGTTG+GGG 0.498085 2.3:-61974988 MS.gene048276:CDS
AATCAACAGGCAACTCAGAT+TGG 0.499106 2.3:-61974962 MS.gene048276:CDS
TTGGGCGATTGAGCCGCGAC+CGG 0.501004 2.3:-61974909 MS.gene048276:CDS
GGAAAGGGCAGTCCTCTGCT+AGG 0.502686 2.3:-61973817 MS.gene048276:CDS
TACTTGGAAGTTATGAAGGA+TGG 0.503632 2.3:-61974878 MS.gene048276:CDS
GAGGTAGATTCATCCCAAAA+AGG 0.506021 2.3:-61973794 MS.gene048276:CDS
TTCTCAGAAAGGTGTGGGAG+TGG 0.506673 2.3:-61975008 MS.gene048276:CDS
TGTTGCTCAGTCTTCTAGTA+AGG 0.506725 2.3:-61975110 MS.gene048276:CDS
GAAGATGAGAGTTTCATTCA+GGG 0.508142 2.3:-61973984 MS.gene048276:CDS
GAAAGGTGTGGGAGTGGAGG+CGG 0.508188 2.3:-61975002 MS.gene048276:CDS
GTTAAGGAAGGAAGTCTAGT+TGG 0.508857 2.3:-61973881 MS.gene048276:CDS
TGGGCGATTGAGCCGCGACC+GGG 0.511260 2.3:-61974908 MS.gene048276:CDS
TAGTTGGTCATTCTTCGGCT+TGG 0.516977 2.3:-61975087 MS.gene048276:CDS
TGAACGAGCGCCAGCAGCTA+AGG 0.523991 2.3:-61973636 MS.gene048276:CDS
CATCAACATGGTTCTCAGAA+AGG 0.526028 2.3:-61975019 MS.gene048276:CDS
TCATCCGATGGGTCAGGAGG+TGG 0.527608 2.3:+61974151 None:intergenic
CAGTCTTCTAGTAAGGTAGT+TGG 0.528464 2.3:-61975103 MS.gene048276:CDS
GCTAAGGAGAATGGAGAAAG+TGG 0.536680 2.3:-61973620 MS.gene048276:CDS
CTCTCGCCAACATGCTGCGG+TGG 0.540409 2.3:-61974762 MS.gene048276:CDS
GGCTCAATCGCCCAATCTGG+TGG 0.540495 2.3:+61974917 None:intergenic
CCCGTGGGTGGTGAAGGACG+AGG 0.543398 2.3:+61974187 None:intergenic
TCCTGACCCATCGGATGAAG+AGG 0.544867 2.3:-61974146 MS.gene048276:CDS
TCTTAATATGTATAATCTCG+TGG 0.545734 2.3:+61974231 None:intergenic
GAGCTTGGTAGTGCAACAAA+TGG 0.548432 2.3:-61974052 MS.gene048276:CDS
CCCACCACCTCCTGACCCAT+CGG 0.549380 2.3:-61974155 MS.gene048276:CDS
TGTACAAAATTCTTCGACTG+TGG 0.550680 2.3:+61975058 None:intergenic
GTTTCATTCAGGGATCAGGT+TGG 0.560524 2.3:-61973974 MS.gene048276:CDS
GAAAGGGCAGTCCTCTGCTA+GGG 0.561223 2.3:-61973816 MS.gene048276:CDS
GCTCGTTCACCACTACTGAC+AGG 0.562972 2.3:+61973650 None:intergenic
CAACAGGCAACTCAGATTGG+TGG 0.563642 2.3:-61974959 MS.gene048276:CDS
CAAACGCTCATTTGCAACAA+AGG 0.565573 2.3:+61974309 None:intergenic
TTCACCTGTTGAGTTTGAAG+TGG 0.567231 2.3:-61974278 MS.gene048276:CDS
ACAACAGCCTCTTCATCCGA+TGG 0.568113 2.3:+61974139 None:intergenic
GGGAAATTGATCCCCGTGGG+TGG 0.570676 2.3:+61974175 None:intergenic
TCACCTGTTGAGTTTGAAGT+GGG 0.574165 2.3:-61974277 MS.gene048276:CDS
GAGGTTGTTGGAATTTCAGA+TGG 0.576473 2.3:-61973938 MS.gene048276:CDS
CAGGCAACTCAGATTGGTGG+AGG 0.577255 2.3:-61974956 MS.gene048276:CDS
CATGGTTCTCAGAAAGGTGT+GGG 0.580915 2.3:-61975013 MS.gene048276:CDS
TGTCTCTCGCCAACATGCTG+CGG 0.581927 2.3:-61974765 MS.gene048276:CDS
ACAAACTACTGTAATTCCAA+AGG 0.585279 2.3:-61973840 MS.gene048276:CDS
GAATTACCATTAACAGAGAA+CGG 0.587204 2.3:+61975145 None:intergenic
TCTAACCTTCCGTTCTTGTG+AGG 0.588526 2.3:+61974737 None:intergenic
ACTGTAATTCCAAAGGGGAA+AGG 0.588891 2.3:-61973833 MS.gene048276:CDS
AGAGAACGGTTCCAAACTCT+CGG 0.589404 2.3:+61975159 None:intergenic
TGTCAAAGTTGGATCAGCCT+GGG 0.595464 2.3:-61973681 MS.gene048276:CDS
ACAAAATTCTTCGACTGTGG+AGG 0.596424 2.3:+61975061 None:intergenic
AGGGCAGTCCTCTGCTAGGG+AGG 0.602420 2.3:-61973813 MS.gene048276:CDS
GAGGAACCACCGCAGCATGT+TGG 0.602912 2.3:+61974756 None:intergenic
TGGTGGGAAATTGATCCCCG+TGG 0.605958 2.3:+61974171 None:intergenic
TCAGAAAGGTGTGGGAGTGG+AGG 0.607307 2.3:-61975005 MS.gene048276:CDS
TGCAAATGAGCGTTTGACCA+AGG 0.607826 2.3:-61974302 MS.gene048276:CDS
GGTCCAGTTGGTGTTAAGGA+AGG 0.608986 2.3:-61973893 MS.gene048276:CDS
GAAACAGAACCTGGTCCAGT+TGG 0.609238 2.3:-61973905 MS.gene048276:CDS
ACATGGTTCTCAGAAAGGTG+TGG 0.612081 2.3:-61975014 MS.gene048276:CDS
GTGTCCAAATCCACTGAGCT+TGG 0.614575 2.3:-61974067 MS.gene048276:CDS
GCGGTGGTTCCTCACAAGAA+CGG 0.615525 2.3:-61974746 MS.gene048276:CDS
ACTGACAGGTGAGTATGCCC+AGG 0.616123 2.3:+61973664 None:intergenic
CAACAGCCTCTTCATCCGAT+GGG 0.619090 2.3:+61974140 None:intergenic
TCATTCAGGGATCAGGTTGG+GGG 0.620615 2.3:-61973971 MS.gene048276:CDS
TGTTGATTCTGCCCCAACAA+CGG 0.623282 2.3:+61974977 None:intergenic
GCATACTCACCTGTCAGTAG+TGG 0.625393 2.3:-61973659 MS.gene048276:CDS
TGAATCTACCTCCCTAGCAG+AGG 0.627223 2.3:+61973805 None:intergenic
CCGTGGGTGGTGAAGGACGA+GGG 0.627786 2.3:+61974188 None:intergenic
TCCAAGCATTGCTGATTACG+AGG 0.635210 2.3:-61973582 MS.gene048276:CDS
TTGGTGGAGGGCAGTCGATG+TGG 0.637100 2.3:-61974943 MS.gene048276:CDS
TCTTCATCCGATGGGTCAGG+AGG 0.642327 2.3:+61974148 None:intergenic
TGGTTCCTCACAAGAACGGA+AGG 0.642477 2.3:-61974742 MS.gene048276:intron
GGTGGGAAATTGATCCCCGT+GGG 0.643525 2.3:+61974172 None:intergenic
CCGATGGGTCAGGAGGTGGT+GGG 0.653058 2.3:+61974155 None:intergenic
TGTTGCACTACCAAGCTCAG+TGG 0.656951 2.3:+61974057 None:intergenic
TTGAAGTGGGACAATCATTG+CGG 0.662047 2.3:-61974264 MS.gene048276:CDS
ATTGATTTGGGATCTGCACA+TGG 0.667462 2.3:-61974334 MS.gene048276:CDS
CTCGTCCTTCACCACCCACG+GGG 0.671541 2.3:-61974186 MS.gene048276:CDS
AGGCAACTCAGATTGGTGGA+GGG 0.676455 2.3:-61974955 MS.gene048276:CDS
TCACAGAATCAACATCAACA+TGG 0.707104 2.3:-61975031 MS.gene048276:CDS
AAACTACTGTAATTCCAAAG+GGG 0.709535 2.3:-61973838 MS.gene048276:CDS
GTAGATGTAGAAACAGAACC+TGG 0.729040 2.3:-61973914 MS.gene048276:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATGTCTTATATTATTT+AGG - chr2.3:61974337-61974356 MS.gene048276:CDS 10.0%
!!! ATTATTTAGAATATGCAATT+CGG + chr2.3:61974119-61974138 None:intergenic 15.0%
!! AAATGAATTACAAATGACTT+AGG - chr2.3:61974275-61974294 MS.gene048276:CDS 20.0%
!!! AGTGTATATGTAATTGATTT+GGG - chr2.3:61974412-61974431 MS.gene048276:intron 20.0%
!!! ATAGACGAAGAAATATTTTT+GGG - chr2.3:61973929-61973948 MS.gene048276:CDS 20.0%
! ATTACAACTATAAGTTGCAA+GGG + chr2.3:61974373-61974392 None:intergenic 25.0%
! CAGTGTATATGTAATTGATT+TGG - chr2.3:61974411-61974430 MS.gene048276:intron 25.0%
! TATTACAACTATAAGTTGCA+AGG + chr2.3:61974374-61974393 None:intergenic 25.0%
! TCTTAATATGTATAATCTCG+TGG + chr2.3:61974530-61974549 None:intergenic 25.0%
! TTTCGTTTGATAAGGTAATA+TGG + chr2.3:61974214-61974233 None:intergenic 25.0%
!! GATAGACGAAGAAATATTTT+TGG - chr2.3:61973928-61973947 MS.gene048276:CDS 25.0%
!! TTTTTACTTGGAAGTTATGA+AGG - chr2.3:61973876-61973895 MS.gene048276:CDS 25.0%
AAACTACTGTAATTCCAAAG+GGG - chr2.3:61974920-61974939 MS.gene048276:CDS 30.0%
ACAAACTACTGTAATTCCAA+AGG - chr2.3:61974918-61974937 MS.gene048276:CDS 30.0%
CAAACTACTGTAATTCCAAA+GGG - chr2.3:61974919-61974938 MS.gene048276:CDS 30.0%
CAGATAATGATTCTCCATAT+AGG + chr2.3:61975059-61975078 None:intergenic 30.0%
GAATCATTATCTGTCAAAGT+TGG - chr2.3:61975066-61975085 MS.gene048276:CDS 30.0%
GAATTACCATTAACAGAGAA+CGG + chr2.3:61973616-61973635 None:intergenic 30.0%
TTGAATGCTTTCGTTTGATA+AGG + chr2.3:61974222-61974241 None:intergenic 30.0%
! TTTATCAGTCACACCTTTTT+GGG + chr2.3:61974980-61974999 None:intergenic 30.0%
!! AATATGGTGTCATTTGATAC+AGG + chr2.3:61974198-61974217 None:intergenic 30.0%
!! AGGATGATGATGATTTGTTT+GGG - chr2.3:61975196-61975215 MS.gene048276:CDS 30.0%
ACTTCCAAGTAAAAAACACC+CGG + chr2.3:61973871-61973890 None:intergenic 35.0%
AGAAGATGAGAGTTTCATTC+AGG - chr2.3:61974773-61974792 MS.gene048276:CDS 35.0%
ATCCATTCCAGTAACATCAA+AGG + chr2.3:61974061-61974080 None:intergenic 35.0%
GAAGATGAGAGTTTCATTCA+GGG - chr2.3:61974774-61974793 MS.gene048276:CDS 35.0%
GGTGCTAGATAGGATTAATT+TGG - chr2.3:61973906-61973925 MS.gene048276:CDS 35.0%
TAAGGTAGTTGGTCATTCTT+CGG - chr2.3:61973666-61973685 MS.gene048276:CDS 35.0%
TACTTGGAAGTTATGAAGGA+TGG - chr2.3:61973880-61973899 MS.gene048276:CDS 35.0%
TCACAGAATCAACATCAACA+TGG - chr2.3:61973727-61973746 MS.gene048276:CDS 35.0%
TGCAACAAATGGCAAAAACA+AGG - chr2.3:61974717-61974736 MS.gene048276:intron 35.0%
TGTACAAAATTCTTCGACTG+TGG + chr2.3:61973703-61973722 None:intergenic 35.0%
! GTTTATCAGTCACACCTTTT+TGG + chr2.3:61974981-61975000 None:intergenic 35.0%
!! AAAAGCTAAAAGTGCTGAAG+TGG + chr2.3:61974303-61974322 None:intergenic 35.0%
!! ATCGTAAATCCCAGTTTTAG+CGG + chr2.3:61975034-61975053 None:intergenic 35.0%
!! GAGGATGATGATGATTTGTT+TGG - chr2.3:61975195-61975214 MS.gene048276:CDS 35.0%
AAACTCAACAGGTGAATCCT+TGG + chr2.3:61974476-61974495 None:intergenic 40.0%
AATACGCTGCTGAATCGTTA+TGG - chr2.3:61974649-61974668 MS.gene048276:intron 40.0%
AATCAACAGGCAACTCAGAT+TGG - chr2.3:61973796-61973815 MS.gene048276:CDS 40.0%
ACAAAATTCTTCGACTGTGG+AGG + chr2.3:61973700-61973719 None:intergenic 40.0%
ACTGTAATTCCAAAGGGGAA+AGG - chr2.3:61974925-61974944 MS.gene048276:CDS 40.0%
ATCAAAAACCCCGCTAAAAC+TGG - chr2.3:61975021-61975040 MS.gene048276:CDS 40.0%
CAAACGCTCATTTGCAACAA+AGG + chr2.3:61974452-61974471 None:intergenic 40.0%
CAAGCACAAAATCACAAGTC+TGG + chr2.3:61973963-61973982 None:intergenic 40.0%
CAGTCTTCTAGTAAGGTAGT+TGG - chr2.3:61973655-61973674 MS.gene048276:CDS 40.0%
CATCAACATGGTTCTCAGAA+AGG - chr2.3:61973739-61973758 MS.gene048276:CDS 40.0%
CTCCTTTGATGTTACTGGAA+TGG - chr2.3:61974056-61974075 MS.gene048276:CDS 40.0%
CTGTAATTCCAAAGGGGAAA+GGG - chr2.3:61974926-61974945 MS.gene048276:CDS 40.0%
GAGGTAGATTCATCCCAAAA+AGG - chr2.3:61974964-61974983 MS.gene048276:CDS 40.0%
GAGGTTGTTGGAATTTCAGA+TGG - chr2.3:61974820-61974839 MS.gene048276:CDS 40.0%
GGGATTTACGATGACCTATA+TGG - chr2.3:61975042-61975061 MS.gene048276:CDS 40.0%
GTAGATGTAGAAACAGAACC+TGG - chr2.3:61974844-61974863 MS.gene048276:CDS 40.0%
GTTAAGGAAGGAAGTCTAGT+TGG - chr2.3:61974877-61974896 MS.gene048276:CDS 40.0%
GTTTAAGAAAGCCGAGAGTT+TGG - chr2.3:61973588-61973607 MS.gene048276:CDS 40.0%
TCAAAAACCCCGCTAAAACT+GGG - chr2.3:61975022-61975041 MS.gene048276:CDS 40.0%
TCTCTCTCCTTTGATGTTAC+TGG - chr2.3:61974051-61974070 MS.gene048276:CDS 40.0%
TCTTAGCAGCTCTTTCTGAT+TGG + chr2.3:61974747-61974766 None:intergenic 40.0%
TGTTGCTCAGTCTTCTAGTA+AGG - chr2.3:61973648-61973667 MS.gene048276:CDS 40.0%
TTCACCTGTTGAGTTTGAAG+TGG - chr2.3:61974480-61974499 MS.gene048276:intron 40.0%
TTGAAGTGGGACAATCATTG+CGG - chr2.3:61974494-61974513 MS.gene048276:intron 40.0%
TTGGAACCGTTCTCTGTTAA+TGG - chr2.3:61973607-61973626 MS.gene048276:CDS 40.0%
TTTCATTCAGGGATCAGGTT+GGG - chr2.3:61974785-61974804 MS.gene048276:CDS 40.0%
! TCACCTGTTGAGTTTGAAGT+GGG - chr2.3:61974481-61974500 MS.gene048276:intron 40.0%
!! ATTGATTTGGGATCTGCACA+TGG - chr2.3:61974424-61974443 MS.gene048276:intron 40.0%
!! CGGGGTTTTTGATCTTGTTT+AGG + chr2.3:61975014-61975033 None:intergenic 40.0%
!! GAAGAACATCTGGTCTTGAT+AGG - chr2.3:61973566-61973585 MS.gene048276:CDS 40.0%
!! TCGTAAATCCCAGTTTTAGC+GGG + chr2.3:61975033-61975052 None:intergenic 40.0%
AAGTAAAAAACACCCGGTCG+CGG + chr2.3:61973865-61973884 None:intergenic 45.0%
ACATGGTTCTCAGAAAGGTG+TGG - chr2.3:61973744-61973763 MS.gene048276:CDS 45.0%
AGAGAACGGTTCCAAACTCT+CGG + chr2.3:61973602-61973621 None:intergenic 45.0%
CTTCCTTCCTTAACACCAAC+TGG + chr2.3:61974871-61974890 None:intergenic 45.0%
GAGAGTTTCATTCAGGGATC+AGG - chr2.3:61974780-61974799 MS.gene048276:CDS 45.0%
GCTAAGGAGAATGGAGAAAG+TGG - chr2.3:61975138-61975157 MS.gene048276:CDS 45.0%
GGAAGTTATGAAGGATGGTC+AGG - chr2.3:61973885-61973904 MS.gene048276:CDS 45.0%
GGAGAGTTAGTTGAGGTTGT+TGG - chr2.3:61974808-61974827 MS.gene048276:CDS 45.0%
GTTTCATTCAGGGATCAGGT+TGG - chr2.3:61974784-61974803 MS.gene048276:CDS 45.0%
TAGTTGGTCATTCTTCGGCT+TGG - chr2.3:61973671-61973690 MS.gene048276:CDS 45.0%
TCCTCGTAATCAGCAATGCT+TGG + chr2.3:61975180-61975199 None:intergenic 45.0%
TCTAACCTTCCGTTCTTGTG+AGG + chr2.3:61974024-61974043 None:intergenic 45.0%
TGCAAATGAGCGTTTGACCA+AGG - chr2.3:61974456-61974475 MS.gene048276:intron 45.0%
TGTCAAAGTTGGATCAGCCT+GGG - chr2.3:61975077-61975096 MS.gene048276:CDS 45.0%
TGTCCCACTTCAAACTCAAC+AGG + chr2.3:61974487-61974506 None:intergenic 45.0%
! ACTACCAAGCTCAGTGGATT+TGG + chr2.3:61974698-61974717 None:intergenic 45.0%
! CATGGTTCTCAGAAAGGTGT+GGG - chr2.3:61973745-61973764 MS.gene048276:CDS 45.0%
! TCCAAGCATTGCTGATTACG+AGG - chr2.3:61975176-61975195 MS.gene048276:CDS 45.0%
! TTCATTCAGGGATCAGGTTG+GGG - chr2.3:61974786-61974805 MS.gene048276:CDS 45.0%
!! CGTAAATCCCAGTTTTAGCG+GGG + chr2.3:61975032-61975051 None:intergenic 45.0%
!! GAGCTTGGTAGTGCAACAAA+TGG - chr2.3:61974706-61974725 MS.gene048276:intron 45.0%
!! TGTTGATTCTGCCCCAACAA+CGG + chr2.3:61973784-61973803 None:intergenic 45.0%
ACAACAGCCTCTTCATCCGA+TGG + chr2.3:61974622-61974641 None:intergenic 50.0%
AGGATGGTCAGGTGCTAGAT+AGG - chr2.3:61973896-61973915 MS.gene048276:CDS 50.0%
AGGCAACTCAGATTGGTGGA+GGG - chr2.3:61973803-61973822 MS.gene048276:CDS 50.0%
CAACAGCCTCTTCATCCGAT+GGG + chr2.3:61974621-61974640 None:intergenic 50.0%
CAACAGGCAACTCAGATTGG+TGG - chr2.3:61973799-61973818 MS.gene048276:CDS 50.0%
CTGTCAAAGTTGGATCAGCC+TGG - chr2.3:61975076-61975095 MS.gene048276:CDS 50.0%
GAAACAGAACCTGGTCCAGT+TGG - chr2.3:61974853-61974872 MS.gene048276:CDS 50.0%
GCATACTCACCTGTCAGTAG+TGG - chr2.3:61975099-61975118 MS.gene048276:CDS 50.0%
GTGTCCAAATCCACTGAGCT+TGG - chr2.3:61974691-61974710 MS.gene048276:intron 50.0%
GTTGTTGGGGCAGAATCAAC+AGG - chr2.3:61973783-61973802 MS.gene048276:CDS 50.0%
TCCTTAACACCAACTGGACC+AGG + chr2.3:61974865-61974884 None:intergenic 50.0%
TCTCCATTCTCCTTAGCTGC+TGG + chr2.3:61975135-61975154 None:intergenic 50.0%
TGAATCTACCTCCCTAGCAG+AGG + chr2.3:61974956-61974975 None:intergenic 50.0%
TGGTTCCTCACAAGAACGGA+AGG - chr2.3:61974016-61974035 MS.gene048276:CDS 50.0%
TGTTGCACTACCAAGCTCAG+TGG + chr2.3:61974704-61974723 None:intergenic 50.0%
! TTCTCAGAAAGGTGTGGGAG+TGG - chr2.3:61973750-61973769 MS.gene048276:CDS 50.0%
!! ACCTGGTCCAGTTGGTGTTA+AGG - chr2.3:61974861-61974880 MS.gene048276:CDS 50.0%
!! GGTCCAGTTGGTGTTAAGGA+AGG - chr2.3:61974865-61974884 MS.gene048276:CDS 50.0%
!! TCATTCAGGGATCAGGTTGG+GGG - chr2.3:61974787-61974806 MS.gene048276:CDS 50.0%
!!! GCGACCGGGTGTTTTTTACT+TGG - chr2.3:61973864-61973883 MS.gene048276:CDS 50.0%
ACTGACAGGTGAGTATGCCC+AGG + chr2.3:61975097-61975116 None:intergenic 55.0%
CAGGCAACTCAGATTGGTGG+AGG - chr2.3:61973802-61973821 MS.gene048276:CDS 55.0%
GAAAGGGCAGTCCTCTGCTA+GGG - chr2.3:61974942-61974961 MS.gene048276:CDS 55.0%
GATGTGGCAGCCACCAGATT+GGG - chr2.3:61973831-61973850 MS.gene048276:CDS 55.0%
GCGGTGGTTCCTCACAAGAA+CGG - chr2.3:61974012-61974031 MS.gene048276:CDS 55.0%
GCTCGTTCACCACTACTGAC+AGG + chr2.3:61975111-61975130 None:intergenic 55.0%
GGTGGGAAATTGATCCCCGT+GGG + chr2.3:61974589-61974608 None:intergenic 55.0%
GGTTGGGGGAGAGTTAGTTG+AGG - chr2.3:61974801-61974820 MS.gene048276:CDS 55.0%
TCCTGACCCATCGGATGAAG+AGG - chr2.3:61974612-61974631 MS.gene048276:intron 55.0%
TCTTCATCCGATGGGTCAGG+AGG + chr2.3:61974613-61974632 None:intergenic 55.0%
TGGTGGGAAATTGATCCCCG+TGG + chr2.3:61974590-61974609 None:intergenic 55.0%
TGTCTCTCGCCAACATGCTG+CGG - chr2.3:61973993-61974012 MS.gene048276:CDS 55.0%
! TCAGAAAGGTGTGGGAGTGG+AGG - chr2.3:61973753-61973772 MS.gene048276:CDS 55.0%
CGATGTGGCAGCCACCAGAT+TGG - chr2.3:61973830-61973849 MS.gene048276:CDS 60.0%
GAGGAACCACCGCAGCATGT+TGG + chr2.3:61974005-61974024 None:intergenic 60.0%
GAGGACTGCCCTTTCCCCTT+TGG + chr2.3:61974937-61974956 None:intergenic 60.0%
GCCTCTTCATCCGATGGGTC+AGG + chr2.3:61974616-61974635 None:intergenic 60.0%
GCGCCAGCAGCTAAGGAGAA+TGG - chr2.3:61975129-61975148 MS.gene048276:CDS 60.0%
GGAAAGGGCAGTCCTCTGCT+AGG - chr2.3:61974941-61974960 MS.gene048276:CDS 60.0%
GGCTCAATCGCCCAATCTGG+TGG + chr2.3:61973844-61973863 None:intergenic 60.0%
GGGAAATTGATCCCCGTGGG+TGG + chr2.3:61974586-61974605 None:intergenic 60.0%
TCATCCGATGGGTCAGGAGG+TGG + chr2.3:61974610-61974629 None:intergenic 60.0%
TGAACGAGCGCCAGCAGCTA+AGG - chr2.3:61975122-61975141 MS.gene048276:CDS 60.0%
TTGATCCCCGTGGGTGGTGA+AGG + chr2.3:61974580-61974599 None:intergenic 60.0%
TTGGTGGAGGGCAGTCGATG+TGG - chr2.3:61973815-61973834 MS.gene048276:CDS 60.0%
! GAAAGGTGTGGGAGTGGAGG+CGG - chr2.3:61973756-61973775 MS.gene048276:CDS 60.0%
AGGGCAGTCCTCTGCTAGGG+AGG - chr2.3:61974945-61974964 MS.gene048276:CDS 65.0%
AGTGGAGGCGGCTCCGTTGT+TGG - chr2.3:61973768-61973787 MS.gene048276:CDS 65.0%
CCCACCACCTCCTGACCCAT+CGG - chr2.3:61974603-61974622 MS.gene048276:intron 65.0%
CCCTCGTCCTTCACCACCCA+CGG - chr2.3:61974570-61974589 MS.gene048276:intron 65.0%
CCGATGGGTCAGGAGGTGGT+GGG + chr2.3:61974606-61974625 None:intergenic 65.0%
CCGTGGGTGGTGAAGGACGA+GGG + chr2.3:61974573-61974592 None:intergenic 65.0%
CCTCGTCCTTCACCACCCAC+GGG - chr2.3:61974571-61974590 MS.gene048276:intron 65.0%
CGCGGCTCAATCGCCCAATC+TGG + chr2.3:61973847-61973866 None:intergenic 65.0%
CTCGTCCTTCACCACCCACG+GGG - chr2.3:61974572-61974591 MS.gene048276:intron 65.0%
CTCTCGCCAACATGCTGCGG+TGG - chr2.3:61973996-61974015 MS.gene048276:CDS 65.0%
GTGGAGGCGGCTCCGTTGTT+GGG - chr2.3:61973769-61973788 MS.gene048276:CDS 65.0%
TCCGATGGGTCAGGAGGTGG+TGG + chr2.3:61974607-61974626 None:intergenic 65.0%
TGGAGGCGGCTCCGTTGTTG+GGG - chr2.3:61973770-61973789 MS.gene048276:CDS 65.0%
TTGGGCGATTGAGCCGCGAC+CGG - chr2.3:61973849-61973868 MS.gene048276:CDS 65.0%
CCCGTGGGTGGTGAAGGACG+AGG + chr2.3:61974574-61974593 None:intergenic 70.0%
TGGGCGATTGAGCCGCGACC+GGG - chr2.3:61973850-61973869 MS.gene048276:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 61973559 61975221 61973559 ID=MS.gene048276
chr2.3 mRNA 61973559 61975221 61973559 ID=MS.gene048276.t1;Parent=MS.gene048276
chr2.3 exon 61974743 61975221 61974743 ID=MS.gene048276.t1.exon1;Parent=MS.gene048276.t1
chr2.3 CDS 61974743 61975221 61974743 ID=cds.MS.gene048276.t1;Parent=MS.gene048276.t1
chr2.3 exon 61973559 61974366 61973559 ID=MS.gene048276.t1.exon2;Parent=MS.gene048276.t1
chr2.3 CDS 61973559 61974366 61973559 ID=cds.MS.gene048276.t1;Parent=MS.gene048276.t1
Gene Sequence

>MS.gene048276

ATGTATGGAAGAACATCTGGTCTTGATAGGTTTAAGAAAGCCGAGAGTTTGGAACCGTTCTCTGTTAATGGTAATTCGTCTTCGAGAAATGTTGCTCAGTCTTCTAGTAAGGTAGTTGGTCATTCTTCGGCTTGGCTGCCTCCACAGTCGAAGAATTTTGTACATCAATCACAGAATCAACATCAACATGGTTCTCAGAAAGGTGTGGGAGTGGAGGCGGCTCCGTTGTTGGGGCAGAATCAACAGGCAACTCAGATTGGTGGAGGGCAGTCGATGTGGCAGCCACCAGATTGGGCGATTGAGCCGCGACCGGGTGTTTTTTACTTGGAAGTTATGAAGGATGGTCAGGTGCTAGATAGGATTAATTTGGATAGACGAAGAAATATTTTTGGGAGACAAATCCAGACTTGTGATTTTGTGCTTGATCATCAATCTGTCTCTCGCCAACATGCTGCGGTGGTTCCTCACAAGAACGGAAGGTTAGAACAGATCTCTCTCTCCTTTGATGTTACTGGAATGGATGTGATGTTTCTCTATATAAATATGTCATTTTCTTTCCGAATTGCATATTCTAAATAATTTGTCTCAAAAGTATTCAAAAACTAAAGCTTCTTTTCGAATAGCTTGCATCTATTACCTGTATCAAATGACACCATATTACCTTATCAAACGAAAGCATTCAAAGATACTAATTCGTGTTAATCAGTCGTTCATAAAAATGAATTACAAATGACTTAGGAACCACTTCAGCACTTTTAGCTTTTAGATATTAAACTAAAAATATGTCTTATATTATTTAGGAATGATGATTCCCTTGCAACTTATAGTTGTAATATTATTTTTACTTTATTTCAGTGTATATGTAATTGATTTGGGATCTGCACATGGTACCTTTGTTGCAAATGAGCGTTTGACCAAGGATTCACCTGTTGAGTTTGAAGTGGGACAATCATTGCGGTTTGCTGCATCCACGAGATTATACATATTAAGAAAGAATGATGCAGCTCTTTTCCCTCGTCCTTCACCACCCACGGGGATCAATTTCCCACCACCTCCTGACCCATCGGATGAAGAGGCTGTTGTTACTTATAATACGCTGCTGAATCGTTATGGCATCAACAAGTCTGATCTCGTGTCCAAATCCACTGAGCTTGGTAGTGCAACAAATGGCAAAAACAAGGATTGCCAATCAGAAAGAGCTGCTAAGAGAATTAAGAAGATGAGAGTTTCATTCAGGGATCAGGTTGGGGGAGAGTTAGTTGAGGTTGTTGGAATTTCAGATGGTGTAGATGTAGAAACAGAACCTGGTCCAGTTGGTGTTAAGGAAGGAAGTCTAGTTGGTAAATATGAATCTCTTGTACAAACTACTGTAATTCCAAAGGGGAAAGGGCAGTCCTCTGCTAGGGAGGTAGATTCATCCCAAAAAGGTGTGACTGATAAACTACAAGAAGTCCTAAACAAGATCAAAAACCCCGCTAAAACTGGGATTTACGATGACCTATATGGAGAATCATTATCTGTCAAAGTTGGATCAGCCTGGGCATACTCACCTGTCAGTAGTGGTGAACGAGCGCCAGCAGCTAAGGAGAATGGAGAAAGTGGAAAATCAGACAGTAATCCAAGCATTGCTGATTACGAGGATGATGATGATTTGTTTGGGTGA
Protein sequence

>MS.gene048276.t1

MYGRTSGLDRFKKAESLEPFSVNGNSSSRNVAQSSSKVVGHSSAWLPPQSKNFVHQSQNQHQHGSQKGVGVEAAPLLGQNQQATQIGGGQSMWQPPDWAIEPRPGVFYLEVMKDGQVLDRINLDRRRNIFGRQIQTCDFVLDHQSVSRQHAAVVPHKNGSVYVIDLGSAHGTFVANERLTKDSPVEFEVGQSLRFAASTRLYILRKNDAALFPRPSPPTGINFPPPPDPSDEEAVVTYNTLLNRYGINKSDLVSKSTELGSATNGKNKDCQSERAAKRIKKMRVSFRDQVGGELVEVVGISDGVDVETEPGPVGVKEGSLVGKYESLVQTTVIPKGKGQSSAREVDSSQKGVTDKLQEVLNKIKNPAKTGIYDDLYGESLSVKVGSAWAYSPVSSGERAPAAKENGESGKSDSNPSIADYEDDDDLFG