Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048437.t1 | XP_013446059.1 | 95.7 | 324 | 14 | 0 | 1 | 324 | 78 | 401 | 1.20E-136 | 496.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048437.t1 | Q8H100 | 66.1 | 336 | 99 | 6 | 1 | 324 | 81 | 413 | 2.5e-82 | 307.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048437.t1 | G7LHQ6 | 95.7 | 324 | 14 | 0 | 1 | 324 | 78 | 401 | 8.8e-137 | 496.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71181 | MS.gene048437 | PPI |
| MS.gene65987 | MS.gene048437 | PPI |
| MS.gene038430 | MS.gene048437 | PPI |
| MS.gene063343 | MS.gene048437 | PPI |
| MS.gene049052 | MS.gene048437 | PPI |
| MS.gene008993 | MS.gene048437 | PPI |
| MS.gene015841 | MS.gene048437 | PPI |
| MS.gene66388 | MS.gene048437 | PPI |
| MS.gene030337 | MS.gene048437 | PPI |
| MS.gene048438 | MS.gene048437 | PPI |
| MS.gene049051 | MS.gene048437 | PPI |
| MS.gene05967 | MS.gene048437 | PPI |
| MS.gene008994 | MS.gene048437 | PPI |
| MS.gene65986 | MS.gene048437 | PPI |
| MS.gene048437 | MS.gene75024 | PPI |
| MS.gene20137 | MS.gene048437 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048437.t1 | MTR_8g067090 | 95.062 | 324 | 16 | 0 | 1 | 324 | 78 | 401 | 0.0 | 567 |
| MS.gene048437.t1 | MTR_8g471120 | 95.062 | 324 | 16 | 0 | 1 | 324 | 78 | 401 | 0.0 | 567 |
| MS.gene048437.t1 | MTR_8g067080 | 74.627 | 335 | 71 | 7 | 1 | 324 | 78 | 409 | 1.69e-159 | 452 |
| MS.gene048437.t1 | MTR_8g471110 | 74.627 | 335 | 71 | 7 | 1 | 324 | 78 | 409 | 1.69e-159 | 452 |
| MS.gene048437.t1 | MTR_8g067080 | 74.328 | 335 | 70 | 8 | 1 | 324 | 78 | 407 | 1.45e-156 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048437.t1 | AT4G17890 | 64.583 | 336 | 104 | 6 | 1 | 324 | 81 | 413 | 3.45e-134 | 387 |
| MS.gene048437.t1 | AT5G46750 | 59.159 | 333 | 119 | 7 | 1 | 324 | 78 | 402 | 7.79e-121 | 353 |
| MS.gene048437.t1 | AT4G17890 | 63.696 | 303 | 95 | 6 | 1 | 291 | 81 | 380 | 1.36e-115 | 339 |
| MS.gene048437.t1 | AT2G35210 | 58.642 | 324 | 121 | 9 | 1 | 317 | 78 | 395 | 3.75e-105 | 313 |
| MS.gene048437.t1 | AT2G35210 | 54.682 | 267 | 109 | 8 | 1 | 261 | 78 | 338 | 3.43e-75 | 236 |
Find 60 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGGTTTCCCGAAGAAATT+TGG | 0.187342 | 8.3:+35843239 | MS.gene048437:CDS |
| CAGCATCTCTTGCTTTGTTC+TGG | 0.224885 | 8.3:-35844135 | None:intergenic |
| ACTGGAGCAGGTGGTTCTTC+AGG | 0.274169 | 8.3:-35843050 | None:intergenic |
| CTCCTTGATGACAGATCTTC+AGG | 0.319205 | 8.3:+35844983 | MS.gene048437:CDS |
| GTTGCTTATCAGAGTTCTAA+TGG | 0.323772 | 8.3:+35842662 | MS.gene048437:CDS |
| CAGAGTTCTAATGGACTTCC+TGG | 0.349310 | 8.3:+35842671 | MS.gene048437:CDS |
| TCTCTCCTGCAATGTTCTTA+AGG | 0.357125 | 8.3:-35844932 | None:intergenic |
| TCAAACTTCTTTGCAGACTT+TGG | 0.358116 | 8.3:+35843209 | MS.gene048437:CDS |
| CAGTCGTCTGAGTTGGATTC+CGG | 0.360915 | 8.3:+35843146 | MS.gene048437:CDS |
| TCTTCCCTTAAGAACATTGC+AGG | 0.374215 | 8.3:+35844927 | MS.gene048437:CDS |
| AAGAACATTGCAGGAGAGAC+TGG | 0.375056 | 8.3:+35844936 | MS.gene048437:CDS |
| AATAATTTAAAGAAGTCTAT+TGG | 0.381488 | 8.3:+35842791 | MS.gene048437:CDS |
| TTACCTTCTTATTGAGCTTA+CGG | 0.385740 | 8.3:-35842850 | None:intergenic |
| CTTGTACAACTCTGCAGCCC+TGG | 0.387896 | 8.3:-35842576 | None:intergenic |
| CTCTCCTGCAATGTTCTTAA+GGG | 0.388884 | 8.3:-35844931 | None:intergenic |
| GTATTTGACCCAAATTTCTT+CGG | 0.390787 | 8.3:-35843248 | None:intergenic |
| TATTTGACCCAAATTTCTTC+GGG | 0.392303 | 8.3:-35843247 | None:intergenic |
| TACCTTCTTATTGAGCTTAC+GGG | 0.406262 | 8.3:-35842849 | None:intergenic |
| GCAGACTTTGGAATGGATAG+TGG | 0.415776 | 8.3:+35843221 | MS.gene048437:CDS |
| GTGGTTTCCCGAAGAAATTT+GGG | 0.427027 | 8.3:+35843240 | MS.gene048437:CDS |
| TTGTTTGTCGTGGATGGAAC+TGG | 0.430685 | 8.3:-35843068 | None:intergenic |
| ACCTCATTGGTCCTGACGCC+AGG | 0.442116 | 8.3:-35842689 | None:intergenic |
| CTAATGGACTTCCTGGCGTC+AGG | 0.450431 | 8.3:+35842678 | MS.gene048437:CDS |
| ATTGAATGTATTTGAACCTC+CGG | 0.459068 | 8.3:-35843165 | None:intergenic |
| GAAGGAAGTAGCTAAAAGTA+TGG | 0.460701 | 8.3:+35842610 | MS.gene048437:CDS |
| TCAAAACGAGAAGTCATAGA+TGG | 0.464553 | 8.3:-35843107 | None:intergenic |
| TTAGAACTCTGATAAGCAAC+AGG | 0.481375 | 8.3:-35842659 | None:intergenic |
| CTTCTTTGCAGACTTTGGAA+TGG | 0.490698 | 8.3:+35843214 | MS.gene048437:CDS |
| TAGAAGCAAAGTATACATCC+AGG | 0.500546 | 8.3:+35842558 | MS.gene048437:CDS |
| ACGAGAAGTCATAGATGGCC+TGG | 0.509294 | 8.3:-35843102 | None:intergenic |
| ATCGCTAGCAGCAAGATCAA+TGG | 0.517560 | 8.3:-35844725 | None:intergenic |
| AAAAGTATGGCTGAAGAGAA+AGG | 0.520493 | 8.3:+35842623 | MS.gene048437:CDS |
| TGATAAGCAACAGGTGATGA+AGG | 0.530089 | 8.3:-35842650 | None:intergenic |
| AAGCAACATGGTTGGACCGA+TGG | 0.531171 | 8.3:+35842527 | MS.gene048437:CDS |
| AAGATCAATGGAGGAATCTC+CGG | 0.531888 | 8.3:-35844713 | None:intergenic |
| ACATTGTTGTTTGTCGTGGA+TGG | 0.534249 | 8.3:-35843074 | None:intergenic |
| CGGAATCCAACTCAGACGAC+TGG | 0.539405 | 8.3:-35843145 | None:intergenic |
| TGTCATCAAGGAGGAGGCCA+AGG | 0.539734 | 8.3:-35844973 | None:intergenic |
| CAAACAACAATGTGTCTGCC+AGG | 0.547869 | 8.3:+35843084 | MS.gene048437:CDS |
| GTCGTGGATGGAACTGGAGC+AGG | 0.550054 | 8.3:-35843062 | None:intergenic |
| GCAAAGAAGTTTGATGACTT+CGG | 0.551658 | 8.3:-35843200 | None:intergenic |
| TAATGTCCAGTCGTCTGAGT+TGG | 0.557059 | 8.3:+35843139 | MS.gene048437:CDS |
| GTACAAGCAAATTCTTGCGA+AGG | 0.584924 | 8.3:+35842592 | MS.gene048437:CDS |
| AAGATCTGTCATCAAGGAGG+AGG | 0.586831 | 8.3:-35844979 | None:intergenic |
| AGACACATTGTTGTTTGTCG+TGG | 0.586871 | 8.3:-35843078 | None:intergenic |
| TGCCCGTAAGCTCAATAAGA+AGG | 0.587772 | 8.3:+35842847 | MS.gene048437:CDS |
| AATTTAAAGAAGTCTATTGG+TGG | 0.593349 | 8.3:+35842794 | MS.gene048437:CDS |
| AGAACATTGCAGGAGAGACT+GGG | 0.594396 | 8.3:+35844937 | MS.gene048437:CDS |
| GAAAGAAAACACATTAGAGA+AGG | 0.594618 | 8.3:+35842715 | MS.gene048437:CDS |
| CAACATGGTTGGACCGATGG+TGG | 0.600620 | 8.3:+35842530 | MS.gene048437:CDS |
| TCGTCTGAGTTGGATTCCGG+AGG | 0.612556 | 8.3:+35843149 | MS.gene048437:CDS |
| GTCCTGAAGATCTGTCATCA+AGG | 0.612922 | 8.3:-35844985 | None:intergenic |
| ACTATTGTATGTGAAGCTCT+AGG | 0.615770 | 8.3:-35842764 | None:intergenic |
| AGAAGCAAAGTATACATCCA+GGG | 0.624009 | 8.3:+35842559 | MS.gene048437:CDS |
| TGCTCATAGAGAGACTCACT+TGG | 0.640748 | 8.3:-35843023 | None:intergenic |
| GCTAGCAGCAAGATCAATGG+AGG | 0.673995 | 8.3:-35844722 | None:intergenic |
| GTGGATGGAACTGGAGCAGG+TGG | 0.679612 | 8.3:-35843059 | None:intergenic |
| TTCGTCTGCCATCTCCAGTG+CGG | 0.684569 | 8.3:+35844675 | MS.gene048437:CDS |
| CTGAAGATCTGTCATCAAGG+AGG | 0.712381 | 8.3:-35844982 | None:intergenic |
| TCCTGGCGTCAGGACCAATG+AGG | 0.713723 | 8.3:+35842688 | MS.gene048437:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTTGATATGAAAATT+AGG | + | chr8.3:35844554-35844573 | MS.gene048437:intron | 10.0% |
| !! | AATAAAAATAAATAAGTGCA+TGG | - | chr8.3:35844023-35844042 | None:intergenic | 15.0% |
| !! | AATAATTTAAAGAAGTCTAT+TGG | + | chr8.3:35842791-35842810 | MS.gene048437:CDS | 15.0% |
| !! | ATAATAACAATATTAAGGTA+TGG | + | chr8.3:35843683-35843702 | MS.gene048437:intron | 15.0% |
| !! | TAATGTCACATTAAAATTTA+GGG | - | chr8.3:35843552-35843571 | None:intergenic | 15.0% |
| !! | TTAATGTCACATTAAAATTT+AGG | - | chr8.3:35843553-35843572 | None:intergenic | 15.0% |
| !!! | ATAATTTTCCTTAAGAAATT+TGG | - | chr8.3:35844537-35844556 | None:intergenic | 15.0% |
| !!! | GTATTTTTTTTTTTGTATAC+CGG | + | chr8.3:35842912-35842931 | MS.gene048437:intron | 15.0% |
| !!! | TTTTTCTTTCAAAAATTTGT+CGG | + | chr8.3:35843525-35843544 | MS.gene048437:intron | 15.0% |
| !! | AATTTCTTAGAGATGAATTT+AGG | - | chr8.3:35844322-35844341 | None:intergenic | 20.0% |
| !! | ACTAATATAATTGGCATTTA+TGG | + | chr8.3:35844454-35844473 | MS.gene048437:intron | 20.0% |
| !! | ATTTCTTAGAGATGAATTTA+GGG | - | chr8.3:35844321-35844340 | None:intergenic | 20.0% |
| !! | CGAAAAATGACTAATATAAT+TGG | + | chr8.3:35844445-35844464 | MS.gene048437:intron | 20.0% |
| !! | GATCCAAAAAAAAAAAGATA+TGG | + | chr8.3:35843867-35843886 | MS.gene048437:intron | 20.0% |
| !! | GTGCTATAATAACAATATTA+AGG | + | chr8.3:35843678-35843697 | MS.gene048437:intron | 20.0% |
| !! | TCAAAGGGTTATATAATAAA+AGG | + | chr8.3:35843462-35843481 | MS.gene048437:intron | 20.0% |
| !! | TGAAATCATTGAAAAATTCT+AGG | + | chr8.3:35843769-35843788 | MS.gene048437:intron | 20.0% |
| !!! | ACTCCATATCTTTTTTTTTT+TGG | - | chr8.3:35843873-35843892 | None:intergenic | 20.0% |
| !!! | ATCTCTAAGAAATTTTTTCA+TGG | + | chr8.3:35844328-35844347 | MS.gene048437:intron | 20.0% |
| !!! | ATCTTTTTTTTTTTGGATCA+TGG | - | chr8.3:35843866-35843885 | None:intergenic | 20.0% |
| !!! | GAATAATGGTAATGAAATTA+GGG | - | chr8.3:35844820-35844839 | None:intergenic | 20.0% |
| !!! | TAAAACATATCTTCTAGTTT+TGG | - | chr8.3:35843620-35843639 | None:intergenic | 20.0% |
| !!! | TAGAAGATATGTTTTAACAA+AGG | + | chr8.3:35843624-35843643 | MS.gene048437:intron | 20.0% |
| !!! | TCTAGTTTTGGTAATTAAAT+TGG | - | chr8.3:35843608-35843627 | None:intergenic | 20.0% |
| !!! | TGAATAATGGTAATGAAATT+AGG | - | chr8.3:35844821-35844840 | None:intergenic | 20.0% |
| ! | AATTTAAAGAAGTCTATTGG+TGG | + | chr8.3:35842794-35842813 | MS.gene048437:CDS | 25.0% |
| ! | ACCATAAAATTAATTCAGGA+AGG | - | chr8.3:35843581-35843600 | None:intergenic | 25.0% |
| ! | ATTTGACACCAAATTTCTTA+AGG | + | chr8.3:35844526-35844545 | MS.gene048437:intron | 25.0% |
| ! | CAAGAACAAAAACTGAATAA+TGG | - | chr8.3:35844834-35844853 | None:intergenic | 25.0% |
| ! | CACAACCATAAAATTAATTC+AGG | - | chr8.3:35843585-35843604 | None:intergenic | 25.0% |
| ! | GCAGTAAAATACTATAAGAA+AGG | - | chr8.3:35844198-35844217 | None:intergenic | 25.0% |
| ! | GTTTCTATATCAATAACGAA+AGG | - | chr8.3:35844780-35844799 | None:intergenic | 25.0% |
| ! | TTATTGATATAGAAACGTCA+TGG | + | chr8.3:35844784-35844803 | MS.gene048437:intron | 25.0% |
| ! | TTCGAGATTATTGTATTTAG+TGG | - | chr8.3:35844429-35844448 | None:intergenic | 25.0% |
| ! | TTTCTTAGAGATGAATTTAG+GGG | - | chr8.3:35844320-35844339 | None:intergenic | 25.0% |
| !! | ACCTTCCTGAATTAATTTTA+TGG | + | chr8.3:35843577-35843596 | MS.gene048437:intron | 25.0% |
| !! | ATCTTGTTATAACTTTGAAC+TGG | - | chr8.3:35843403-35843422 | None:intergenic | 25.0% |
| !! | ATTTCGTCATCTCAATTTTT+CGG | + | chr8.3:35844109-35844128 | MS.gene048437:CDS | 25.0% |
| !! | CAAATTTTCTTTAAGCAACA+TGG | + | chr8.3:35842515-35842534 | MS.gene048437:CDS | 25.0% |
| !! | TACAAAGAAAATTAGCTCTT+TGG | - | chr8.3:35844582-35844601 | None:intergenic | 25.0% |
| !! | TTTTGTCATGTATAAGATTG+AGG | + | chr8.3:35844045-35844064 | MS.gene048437:intron | 25.0% |
| AAACAAACTTAAGACTCAAC+CGG | + | chr8.3:35843797-35843816 | MS.gene048437:intron | 30.0% | |
| AATACGATTCGAAAGAAACA+GGG | - | chr8.3:35844260-35844279 | None:intergenic | 30.0% | |
| ACTAATATGACAGGTATTCT+AGG | - | chr8.3:35844400-35844419 | None:intergenic | 30.0% | |
| ATAAATAAGTGCATGGCAAA+AGG | - | chr8.3:35844016-35844035 | None:intergenic | 30.0% | |
| ATTGAATGTATTTGAACCTC+CGG | - | chr8.3:35843168-35843187 | None:intergenic | 30.0% | |
| GAAAGAAAACACATTAGAGA+AGG | + | chr8.3:35842715-35842734 | MS.gene048437:CDS | 30.0% | |
| GTATTTGACCCAAATTTCTT+CGG | - | chr8.3:35843251-35843270 | None:intergenic | 30.0% | |
| TATTTGACCCAAATTTCTTC+GGG | - | chr8.3:35843250-35843269 | None:intergenic | 30.0% | |
| TGGTTGAAAACTAATATGAC+AGG | - | chr8.3:35844409-35844428 | None:intergenic | 30.0% | |
| TTACCTTCTTATTGAGCTTA+CGG | - | chr8.3:35842853-35842872 | None:intergenic | 30.0% | |
| TTCTTGAATTGATGTCTGAT+GGG | + | chr8.3:35844848-35844867 | MS.gene048437:intron | 30.0% | |
| ! | CAAATCTAAATAGTCTTGCT+TGG | - | chr8.3:35843933-35843952 | None:intergenic | 30.0% |
| ! | CATCAATCGATTATCTTTTC+AGG | + | chr8.3:35844750-35844769 | MS.gene048437:CDS | 30.0% |
| ! | TTTTCTTTAAGCAACATGGT+TGG | + | chr8.3:35842519-35842538 | MS.gene048437:CDS | 30.0% |
| !! | AATCGTATTCTTTTGATTGC+TGG | + | chr8.3:35844271-35844290 | MS.gene048437:intron | 30.0% |
| AATAGTTGAGCTCAGTAGAA+AGG | + | chr8.3:35842876-35842895 | MS.gene048437:intron | 35.0% | |
| ACCTCTACAAAAATCAACCA+TGG | + | chr8.3:35843822-35843841 | MS.gene048437:intron | 35.0% | |
| ACTATTGTATGTGAAGCTCT+AGG | - | chr8.3:35842767-35842786 | None:intergenic | 35.0% | |
| AGAAGCAAAGTATACATCCA+GGG | + | chr8.3:35842559-35842578 | MS.gene048437:CDS | 35.0% | |
| AGTTGCACTATACAAAACAG+AGG | - | chr8.3:35843306-35843325 | None:intergenic | 35.0% | |
| ATACGATTCGAAAGAAACAG+GGG | - | chr8.3:35844259-35844278 | None:intergenic | 35.0% | |
| CAAATCCATCATGCAAAACA+TGG | + | chr8.3:35843424-35843443 | MS.gene048437:intron | 35.0% | |
| CTATACAAAACAGAGGTTGA+TGG | - | chr8.3:35843299-35843318 | None:intergenic | 35.0% | |
| GAAGACAAAAATAACCCAAC+AGG | - | chr8.3:35842943-35842962 | None:intergenic | 35.0% | |
| GAAGGAAGTAGCTAAAAGTA+TGG | + | chr8.3:35842610-35842629 | MS.gene048437:CDS | 35.0% | |
| GAATACGATTCGAAAGAAAC+AGG | - | chr8.3:35844261-35844280 | None:intergenic | 35.0% | |
| GTTCTTGAATTGATGTCTGA+TGG | + | chr8.3:35844847-35844866 | MS.gene048437:intron | 35.0% | |
| TACCTTCTTATTGAGCTTAC+GGG | - | chr8.3:35842852-35842871 | None:intergenic | 35.0% | |
| TAGAAGCAAAGTATACATCC+AGG | + | chr8.3:35842558-35842577 | MS.gene048437:CDS | 35.0% | |
| TCAAAACGAGAAGTCATAGA+TGG | - | chr8.3:35843110-35843129 | None:intergenic | 35.0% | |
| TCAAACTTCTTTGCAGACTT+TGG | + | chr8.3:35843209-35843228 | MS.gene048437:CDS | 35.0% | |
| TTAGAACTCTGATAAGCAAC+AGG | - | chr8.3:35842662-35842681 | None:intergenic | 35.0% | |
| TTATGGTTCTTTAGCGACTA+GGG | + | chr8.3:35844471-35844490 | MS.gene048437:intron | 35.0% | |
| TTTATGGTTCTTTAGCGACT+AGG | + | chr8.3:35844470-35844489 | MS.gene048437:intron | 35.0% | |
| ! | AAAAGTATGGCTGAAGAGAA+AGG | + | chr8.3:35842623-35842642 | MS.gene048437:CDS | 35.0% |
| ! | GCAAAGAAGTTTGATGACTT+CGG | - | chr8.3:35843203-35843222 | None:intergenic | 35.0% |
| ! | GTGGTCAGCTTAAACAATTT+TGG | + | chr8.3:35843336-35843355 | MS.gene048437:intron | 35.0% |
| ! | GTTGCTTATCAGAGTTCTAA+TGG | + | chr8.3:35842662-35842681 | MS.gene048437:CDS | 35.0% |
| ! | GTTTTCTTTCAGTACCTCAT+TGG | - | chr8.3:35842705-35842724 | None:intergenic | 35.0% |
| ! | TAGTCACTCTTGTTACTTCA+GGG | + | chr8.3:35844652-35844671 | MS.gene048437:intron | 35.0% |
| ! | TGCTTCTATTTTACCACCAT+CGG | - | chr8.3:35842546-35842565 | None:intergenic | 35.0% |
| !! | AAAGTGTTGTGTAACAACCA+TGG | - | chr8.3:35843842-35843861 | None:intergenic | 35.0% |
| !! | ACCATGGTTGATTTTTGTAG+AGG | - | chr8.3:35843826-35843845 | None:intergenic | 35.0% |
| !! | GACTTCTCGTTTTGAATATG+TGG | + | chr8.3:35843115-35843134 | MS.gene048437:CDS | 35.0% |
| !! | TGTCTTACATGGTTTTGCAA+GGG | + | chr8.3:35843708-35843727 | MS.gene048437:intron | 35.0% |
| !!! | TTGATTTTTGTAGAGGTGTC+CGG | - | chr8.3:35843819-35843838 | None:intergenic | 35.0% |
| AAAAAAATCCGCACTGGAGA+TGG | - | chr8.3:35844686-35844705 | None:intergenic | 40.0% | |
| AAGATCAATGGAGGAATCTC+CGG | - | chr8.3:35844716-35844735 | None:intergenic | 40.0% | |
| AAGGTATGGTCTGTCTTACA+TGG | + | chr8.3:35843697-35843716 | MS.gene048437:intron | 40.0% | |
| AATCAGGATTGGGAGGAAAA+GGG | - | chr8.3:35844883-35844902 | None:intergenic | 40.0% | |
| AGTGGTTTCCCGAAGAAATT+TGG | + | chr8.3:35843239-35843258 | MS.gene048437:CDS | 40.0% | |
| ATCCATCATGCAAAACATGG+TGG | + | chr8.3:35843427-35843446 | MS.gene048437:intron | 40.0% | |
| CCTGCAAAACAATCAGGATT+GGG | - | chr8.3:35844893-35844912 | None:intergenic | 40.0% | |
| CTCTCCTGCAATGTTCTTAA+GGG | - | chr8.3:35844934-35844953 | None:intergenic | 40.0% | |
| GTACAAGCAAATTCTTGCGA+AGG | + | chr8.3:35842592-35842611 | MS.gene048437:CDS | 40.0% | |
| GTGGTTTCCCGAAGAAATTT+GGG | + | chr8.3:35843240-35843259 | MS.gene048437:CDS | 40.0% | |
| GTTCCATAGAGACTAGGAAA+GGG | - | chr8.3:35844378-35844397 | None:intergenic | 40.0% | |
| TATCTTGATTGCATGTGCAG+AGG | + | chr8.3:35843651-35843670 | MS.gene048437:intron | 40.0% | |
| TATGGTTCTTTAGCGACTAG+GGG | + | chr8.3:35844472-35844491 | MS.gene048437:intron | 40.0% | |
| TCACTTGGCTACATTTGACA+AGG | - | chr8.3:35843011-35843030 | None:intergenic | 40.0% | |
| TCTCTCCTGCAATGTTCTTA+AGG | - | chr8.3:35844935-35844954 | None:intergenic | 40.0% | |
| TCTTCCCTTAAGAACATTGC+AGG | + | chr8.3:35844927-35844946 | MS.gene048437:CDS | 40.0% | |
| TGATAAGCAACAGGTGATGA+AGG | - | chr8.3:35842653-35842672 | None:intergenic | 40.0% | |
| TTCCATAGAGACTAGGAAAG+GGG | - | chr8.3:35844377-35844396 | None:intergenic | 40.0% | |
| TTCTAGGTTCCATAGAGACT+AGG | - | chr8.3:35844384-35844403 | None:intergenic | 40.0% | |
| ! | CTAGTCACTCTTGTTACTTC+AGG | + | chr8.3:35844651-35844670 | MS.gene048437:intron | 40.0% |
| ! | CTATTGGTGGTAAAAAGCCT+GGG | + | chr8.3:35842807-35842826 | MS.gene048437:CDS | 40.0% |
| ! | CTTCTTTGCAGACTTTGGAA+TGG | + | chr8.3:35843214-35843233 | MS.gene048437:CDS | 40.0% |
| ! | TCTATTGGTGGTAAAAAGCC+TGG | + | chr8.3:35842806-35842825 | MS.gene048437:CDS | 40.0% |
| ! | TTCCACCATGTTTTGCATGA+TGG | - | chr8.3:35843432-35843451 | None:intergenic | 40.0% |
| !! | AAAACAGAGGTTGATGGCAT+AGG | - | chr8.3:35843293-35843312 | None:intergenic | 40.0% |
| !! | AAACAGAGGTTGATGGCATA+GGG | - | chr8.3:35843292-35843311 | None:intergenic | 40.0% |
| !! | ACATTGTTGTTTGTCGTGGA+TGG | - | chr8.3:35843077-35843096 | None:intergenic | 40.0% |
| !! | AGACACATTGTTGTTTGTCG+TGG | - | chr8.3:35843081-35843100 | None:intergenic | 40.0% |
| !! | CTGTCTTACATGGTTTTGCA+AGG | + | chr8.3:35843707-35843726 | MS.gene048437:intron | 40.0% |
| !! | GTCTTACATGGTTTTGCAAG+GGG | + | chr8.3:35843709-35843728 | MS.gene048437:intron | 40.0% |
| !! | TGGAAAGTGCTGACATCAAA+GGG | + | chr8.3:35843447-35843466 | MS.gene048437:intron | 40.0% |
| !!! | ATCTCCAGTGCGGATTTTTT+TGG | + | chr8.3:35844685-35844704 | MS.gene048437:CDS | 40.0% |
| AACCCCTTTCCTAGTCTCTA+TGG | + | chr8.3:35844372-35844391 | MS.gene048437:intron | 45.0% | |
| AAGAACATTGCAGGAGAGAC+TGG | + | chr8.3:35844936-35844955 | MS.gene048437:CDS | 45.0% | |
| AAGATCTGTCATCAAGGAGG+AGG | - | chr8.3:35844982-35845001 | None:intergenic | 45.0% | |
| AATAACCCAACAGGCAGTTC+CGG | - | chr8.3:35842934-35842953 | None:intergenic | 45.0% | |
| AGAACATTGCAGGAGAGACT+GGG | + | chr8.3:35844937-35844956 | MS.gene048437:CDS | 45.0% | |
| ATCAGGATTGGGAGGAAAAG+GGG | - | chr8.3:35844882-35844901 | None:intergenic | 45.0% | |
| ATCGCTAGCAGCAAGATCAA+TGG | - | chr8.3:35844728-35844747 | None:intergenic | 45.0% | |
| ATGGTTCTTTAGCGACTAGG+GGG | + | chr8.3:35844473-35844492 | MS.gene048437:intron | 45.0% | |
| CAAACAACAATGTGTCTGCC+AGG | + | chr8.3:35843084-35843103 | MS.gene048437:CDS | 45.0% | |
| CAATCAGGATTGGGAGGAAA+AGG | - | chr8.3:35844884-35844903 | None:intergenic | 45.0% | |
| CTGAAGATCTGTCATCAAGG+AGG | - | chr8.3:35844985-35845004 | None:intergenic | 45.0% | |
| GCAAAACAATCAGGATTGGG+AGG | - | chr8.3:35844890-35844909 | None:intergenic | 45.0% | |
| GCCTGCAAAACAATCAGGAT+TGG | - | chr8.3:35844894-35844913 | None:intergenic | 45.0% | |
| GGTTCCATAGAGACTAGGAA+AGG | - | chr8.3:35844379-35844398 | None:intergenic | 45.0% | |
| GTAAAAAGCCTGGGAAGAGT+GGG | + | chr8.3:35842816-35842835 | MS.gene048437:CDS | 45.0% | |
| GTCACCAAAAAAATCCGCAC+TGG | - | chr8.3:35844692-35844711 | None:intergenic | 45.0% | |
| GTCCTGAAGATCTGTCATCA+AGG | - | chr8.3:35844988-35845007 | None:intergenic | 45.0% | |
| GTTGTGCCTGCAAAACAATC+AGG | - | chr8.3:35844899-35844918 | None:intergenic | 45.0% | |
| TAAAAAGCCTGGGAAGAGTG+GGG | + | chr8.3:35842817-35842836 | MS.gene048437:CDS | 45.0% | |
| TAATGTCCAGTCGTCTGAGT+TGG | + | chr8.3:35843139-35843158 | MS.gene048437:CDS | 45.0% | |
| TGATTGCATGTGCAGAGGTT+GGG | + | chr8.3:35843656-35843675 | MS.gene048437:intron | 45.0% | |
| TGCCCGTAAGCTCAATAAGA+AGG | + | chr8.3:35842847-35842866 | MS.gene048437:CDS | 45.0% | |
| TGCTCATAGAGAGACTCACT+TGG | - | chr8.3:35843026-35843045 | None:intergenic | 45.0% | |
| TGGGAAAAAACTCAGCTCCT+TGG | + | chr8.3:35844956-35844975 | MS.gene048437:CDS | 45.0% | |
| TTGATTGCATGTGCAGAGGT+TGG | + | chr8.3:35843655-35843674 | MS.gene048437:intron | 45.0% | |
| TTGTTTGTCGTGGATGGAAC+TGG | - | chr8.3:35843071-35843090 | None:intergenic | 45.0% | |
| ! | AGGGCTTACTTGCACTTTTG+AGG | - | chr8.3:35843273-35843292 | None:intergenic | 45.0% |
| ! | CAGCATCTCTTGCTTTGTTC+TGG | - | chr8.3:35844138-35844157 | None:intergenic | 45.0% |
| ! | CTCCTTGATGACAGATCTTC+AGG | + | chr8.3:35844983-35845002 | MS.gene048437:CDS | 45.0% |
| ! | GGGGCACTCTTACATTATCA+AGG | + | chr8.3:35844492-35844511 | MS.gene048437:intron | 45.0% |
| !! | CAGAGTTCTAATGGACTTCC+TGG | + | chr8.3:35842671-35842690 | MS.gene048437:CDS | 45.0% |
| !! | CCCAATCCTGATTGTTTTGC+AGG | + | chr8.3:35844890-35844909 | MS.gene048437:intron | 45.0% |
| !! | GATTGTTTTGCAGGCACAAC+AGG | + | chr8.3:35844899-35844918 | MS.gene048437:intron | 45.0% |
| !! | GCAGACTTTGGAATGGATAG+TGG | + | chr8.3:35843221-35843240 | MS.gene048437:CDS | 45.0% |
| !! | GTGGAAAGTGCTGACATCAA+AGG | + | chr8.3:35843446-35843465 | MS.gene048437:intron | 45.0% |
| !!! | GCGGATTTTTTTGGTGACTC+CGG | + | chr8.3:35844694-35844713 | MS.gene048437:CDS | 45.0% |
| AAAAAGCCTGGGAAGAGTGG+GGG | + | chr8.3:35842818-35842837 | MS.gene048437:CDS | 50.0% | |
| AAGCAACATGGTTGGACCGA+TGG | + | chr8.3:35842527-35842546 | MS.gene048437:CDS | 50.0% | |
| ACGAGAAGTCATAGATGGCC+TGG | - | chr8.3:35843105-35843124 | None:intergenic | 50.0% | |
| AGTGCAACTTCTACTGCACG+TGG | + | chr8.3:35843317-35843336 | MS.gene048437:intron | 50.0% | |
| GCTAGCAGCAAGATCAATGG+AGG | - | chr8.3:35844725-35844744 | None:intergenic | 50.0% | |
| GGTAAAAAGCCTGGGAAGAG+TGG | + | chr8.3:35842815-35842834 | MS.gene048437:CDS | 50.0% | |
| GTATACCGGAACTGCCTGTT+GGG | + | chr8.3:35842926-35842945 | MS.gene048437:intron | 50.0% | |
| TGTATACCGGAACTGCCTGT+TGG | + | chr8.3:35842925-35842944 | MS.gene048437:intron | 50.0% | |
| ! | CAGTCGTCTGAGTTGGATTC+CGG | + | chr8.3:35843146-35843165 | MS.gene048437:CDS | 50.0% |
| ACTGGAGCAGGTGGTTCTTC+AGG | - | chr8.3:35843053-35843072 | None:intergenic | 55.0% | |
| CAACATGGTTGGACCGATGG+TGG | + | chr8.3:35842530-35842549 | MS.gene048437:CDS | 55.0% | |
| CGGAATCCAACTCAGACGAC+TGG | - | chr8.3:35843148-35843167 | None:intergenic | 55.0% | |
| CTTGTACAACTCTGCAGCCC+TGG | - | chr8.3:35842579-35842598 | None:intergenic | 55.0% | |
| TGTCATCAAGGAGGAGGCCA+AGG | - | chr8.3:35844976-35844995 | None:intergenic | 55.0% | |
| TTCGTCTGCCATCTCCAGTG+CGG | + | chr8.3:35844675-35844694 | MS.gene048437:CDS | 55.0% | |
| ! | TCGTCTGAGTTGGATTCCGG+AGG | + | chr8.3:35843149-35843168 | MS.gene048437:CDS | 55.0% |
| !! | CTAATGGACTTCCTGGCGTC+AGG | + | chr8.3:35842678-35842697 | MS.gene048437:CDS | 55.0% |
| ACCTCATTGGTCCTGACGCC+AGG | - | chr8.3:35842692-35842711 | None:intergenic | 60.0% | |
| GTCGTGGATGGAACTGGAGC+AGG | - | chr8.3:35843065-35843084 | None:intergenic | 60.0% | |
| GTGGATGGAACTGGAGCAGG+TGG | - | chr8.3:35843062-35843081 | None:intergenic | 60.0% | |
| TCCTGGCGTCAGGACCAATG+AGG | + | chr8.3:35842688-35842707 | MS.gene048437:CDS | 60.0% | |
| CCAAGTCCCCCACTCTTCCC+AGG | - | chr8.3:35842827-35842846 | None:intergenic | 65.0% | |
| CCTGGGAAGAGTGGGGGACT+TGG | + | chr8.3:35842824-35842843 | MS.gene048437:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 35842488 | 35845019 | 35842488 | ID=MS.gene048437 |
| chr8.3 | mRNA | 35842488 | 35845019 | 35842488 | ID=MS.gene048437.t1;Parent=MS.gene048437 |
| chr8.3 | exon | 35842488 | 35842868 | 35842488 | ID=MS.gene048437.t1.exon1;Parent=MS.gene048437.t1 |
| chr8.3 | CDS | 35842488 | 35842868 | 35842488 | ID=cds.MS.gene048437.t1;Parent=MS.gene048437.t1 |
| chr8.3 | exon | 35843023 | 35843283 | 35843023 | ID=MS.gene048437.t1.exon2;Parent=MS.gene048437.t1 |
| chr8.3 | CDS | 35843023 | 35843283 | 35843023 | ID=cds.MS.gene048437.t1;Parent=MS.gene048437.t1 |
| chr8.3 | exon | 35844061 | 35844186 | 35844061 | ID=MS.gene048437.t1.exon3;Parent=MS.gene048437.t1 |
| chr8.3 | CDS | 35844061 | 35844186 | 35844061 | ID=cds.MS.gene048437.t1;Parent=MS.gene048437.t1 |
| chr8.3 | exon | 35844673 | 35844771 | 35844673 | ID=MS.gene048437.t1.exon4;Parent=MS.gene048437.t1 |
| chr8.3 | CDS | 35844673 | 35844771 | 35844673 | ID=cds.MS.gene048437.t1;Parent=MS.gene048437.t1 |
| chr8.3 | exon | 35844912 | 35845019 | 35844912 | ID=MS.gene048437.t1.exon5;Parent=MS.gene048437.t1 |
| chr8.3 | CDS | 35844912 | 35845019 | 35844912 | ID=cds.MS.gene048437.t1;Parent=MS.gene048437.t1 |
| Gene Sequence |
| Protein sequence |
