Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049246.t1 | XP_003602673.2 | 95.1 | 307 | 12 | 2 | 24 | 329 | 5 | 309 | 9.10E-140 | 506.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049246.t1 | G8A1P3 | 95.1 | 307 | 12 | 2 | 24 | 329 | 5 | 309 | 6.6e-140 | 506.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049246 | MS.gene06355 | 0.826592 | 2.49E-54 | -1.69E-46 |
| MS.gene049246 | MS.gene28404 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene049246 | MS.gene39334 | 0.802166 | 6.38E-49 | -1.69E-46 |
| MS.gene049246 | MS.gene40929 | 0.83969 | 1.36E-57 | -1.69E-46 |
| MS.gene049246 | MS.gene45431 | 0.801323 | 9.51E-49 | -1.69E-46 |
| MS.gene049246 | MS.gene58091 | 0.800059 | 1.72E-48 | -1.69E-46 |
| MS.gene049246 | MS.gene91483 | 0.801778 | 7.67E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049246.t1 | MTR_3g096860 | 91.883 | 308 | 20 | 3 | 24 | 329 | 5 | 309 | 0.0 | 545 |
| MS.gene049246.t1 | MTR_3g096860 | 88.571 | 280 | 27 | 3 | 24 | 301 | 5 | 281 | 1.66e-170 | 476 |
| MS.gene049246.t1 | MTR_8g094200 | 63.981 | 211 | 74 | 1 | 120 | 328 | 117 | 327 | 3.36e-95 | 286 |
| MS.gene049246.t1 | MTR_8g094200 | 59.091 | 176 | 70 | 1 | 120 | 293 | 117 | 292 | 6.14e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049246.t1 | AT4G33480 | 70.698 | 215 | 60 | 3 | 118 | 329 | 121 | 335 | 6.35e-105 | 310 |
Find 66 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAGATGCATTCGTAATT+TGG | 0.146385 | 3.3:-80217424 | None:intergenic |
| GAAGAAGGAGAATGCTTCTT+TGG | 0.277770 | 3.3:-80215924 | None:intergenic |
| AACAAGAGTAATGGTGAAAT+TGG | 0.297804 | 3.3:+80216002 | MS.gene049246:CDS |
| AAATTCAGTCTCTTCATCTA+TGG | 0.303961 | 3.3:-80219161 | None:intergenic |
| ACGAAACCAGCCGGTGGTTT+AGG | 0.307214 | 3.3:-80216077 | None:intergenic |
| AGAAGAATTGGAAATGGAAT+TGG | 0.329446 | 3.3:-80216030 | None:intergenic |
| AATTTGAGGCAGAGAAGAAT+TGG | 0.329493 | 3.3:-80216042 | None:intergenic |
| ATTGGAAGCGCTAGAGATAA+TGG | 0.329827 | 3.3:-80215895 | None:intergenic |
| CGAATGCATCTGATTTATAG+TGG | 0.365590 | 3.3:+80217432 | MS.gene049246:CDS |
| CAAGCTTCTTACTTCTTCAA+TGG | 0.373810 | 3.3:+80216115 | MS.gene049246:CDS |
| TCCTGCTAACAACCTTCCTT+TGG | 0.379626 | 3.3:+80216413 | MS.gene049246:CDS |
| AGGCAGAGAAGAATTGGAAA+TGG | 0.386145 | 3.3:-80216036 | None:intergenic |
| GTGCTCTGTAATATTTGTAT+AGG | 0.414803 | 3.3:-80216748 | None:intergenic |
| TTCCTTTGGAATGCGTGATA+AGG | 0.446204 | 3.3:+80216427 | MS.gene049246:CDS |
| TTGTTTCTGGTGGATGAAGA+AGG | 0.472935 | 3.3:-80215939 | None:intergenic |
| AGATGGTAAAGATGATGGCT+TGG | 0.488428 | 3.3:+80218086 | MS.gene049246:intron |
| TTGGAAGCGCTAGAGATAAT+GGG | 0.489961 | 3.3:-80215894 | None:intergenic |
| GACTGAATTTAATGCCTTGG+TGG | 0.490843 | 3.3:+80219174 | MS.gene049246:CDS |
| AGAAATCACACACTTCAATC+AGG | 0.494930 | 3.3:+80218122 | MS.gene049246:CDS |
| GCACTCCTTGACTCACTGTT+GGG | 0.503400 | 3.3:+80219296 | MS.gene049246:CDS |
| GACATCTTTGACTTTCATGC+AGG | 0.506567 | 3.3:+80217590 | MS.gene049246:CDS |
| GGTAGTGGCGTAGGAATTTG+AGG | 0.510408 | 3.3:-80216056 | None:intergenic |
| CGCACTCCTTGACTCACTGT+TGG | 0.510918 | 3.3:+80219295 | MS.gene049246:CDS |
| GGAAAGGAAAATTGAAGTCT+CGG | 0.511604 | 3.3:-80215804 | None:intergenic |
| TCTGAGAGATGGTATATAAG+AGG | 0.516199 | 3.3:+80215706 | None:intergenic |
| TCCAAAGGAAGGTTGTTAGC+AGG | 0.520532 | 3.3:-80216414 | None:intergenic |
| AGAGACTGAATTTAATGCCT+TGG | 0.522159 | 3.3:+80219171 | MS.gene049246:CDS |
| GAAAGGAAAATTGAAGTCTC+GGG | 0.522171 | 3.3:-80215803 | None:intergenic |
| CCAGCCGGTGGTTTAGGTAG+TGG | 0.522568 | 3.3:-80216071 | None:intergenic |
| GCAAGTGCAAAAGAAGCAGC+AGG | 0.531459 | 3.3:-80217402 | None:intergenic |
| TTATCCTTGCAGGATCAGAA+TGG | 0.536096 | 3.3:+80218950 | MS.gene049246:intron |
| ATGCTTCTTTGGTTGAACAT+TGG | 0.536426 | 3.3:-80215913 | None:intergenic |
| AAATTGAAGTCTCGGGGAGG+AGG | 0.544141 | 3.3:-80215796 | None:intergenic |
| GGAGGAAGGATAAACATTCA+AGG | 0.546652 | 3.3:-80215778 | None:intergenic |
| AAGAATAACAACAAGAGTAA+TGG | 0.549289 | 3.3:+80215993 | MS.gene049246:CDS |
| CTCCTTATCACGCATTCCAA+AGG | 0.556000 | 3.3:-80216429 | None:intergenic |
| GAGATAATGGGTTGAAAGCG+AGG | 0.561102 | 3.3:-80215882 | None:intergenic |
| GAGATGATTGTATGTTGCTA+TGG | 0.566673 | 3.3:+80216472 | MS.gene049246:CDS |
| TGAAGTCTCGGGGAGGAGGA+AGG | 0.572117 | 3.3:-80215792 | None:intergenic |
| TTATGAACAGGAATTGCTTG+AGG | 0.572765 | 3.3:+80219120 | MS.gene049246:intron |
| GAATGCATCTGATTTATAGT+GGG | 0.573548 | 3.3:+80217433 | MS.gene049246:CDS |
| CATTTAACTTACATGTCAAG+TGG | 0.573738 | 3.3:-80216495 | None:intergenic |
| ATATTACAGAGCACAGGTGA+TGG | 0.577846 | 3.3:+80216757 | MS.gene049246:CDS |
| CCACTACCTAAACCACCGGC+TGG | 0.578308 | 3.3:+80216071 | MS.gene049246:CDS |
| TCTATGGCGCTAATGACAGC+AGG | 0.580399 | 3.3:-80219145 | None:intergenic |
| AGATAATGGGTTGAAAGCGA+GGG | 0.583691 | 3.3:-80215881 | None:intergenic |
| TTATCACGCATTCCAAAGGA+AGG | 0.584077 | 3.3:-80216425 | None:intergenic |
| TACAGAGCACAGGTGATGGA+TGG | 0.592566 | 3.3:+80216761 | MS.gene049246:CDS |
| AGATGATGGCTTGGCAACTG+AGG | 0.596641 | 3.3:+80218095 | MS.gene049246:CDS |
| GGTTGATTGAGTGTTGAATG+AGG | 0.602908 | 3.3:-80215825 | None:intergenic |
| TCATCTACGACGAAACCAGC+CGG | 0.613461 | 3.3:-80216086 | None:intergenic |
| AACTAACAAGTGTGGCAAGT+CGG | 0.615087 | 3.3:-80216139 | None:intergenic |
| ATACAAATATTACAGAGCAC+AGG | 0.618579 | 3.3:+80216751 | MS.gene049246:CDS |
| ATTGAGTGTTGAATGAGGAA+AGG | 0.624056 | 3.3:-80215820 | None:intergenic |
| TACGCCACTACCTAAACCAC+CGG | 0.633878 | 3.3:+80216067 | MS.gene049246:CDS |
| GATGATGGCTTGGCAACTGA+GGG | 0.636441 | 3.3:+80218096 | MS.gene049246:CDS |
| AGAATATTCACAAGTTCTCG+AGG | 0.645145 | 3.3:+80216450 | MS.gene049246:CDS |
| AAATTCAAAACTAACAAGTG+TGG | 0.670625 | 3.3:-80216147 | None:intergenic |
| AAAGGAAAATTGAAGTCTCG+GGG | 0.671812 | 3.3:-80215802 | None:intergenic |
| CAACAGTGAGTCAAGGAGTG+CGG | 0.672482 | 3.3:-80219294 | None:intergenic |
| AGTGAGAACGATGAGAAGCG+TGG | 0.673004 | 3.3:-80215846 | None:intergenic |
| GGTGGTTTAGGTAGTGGCGT+AGG | 0.681302 | 3.3:-80216065 | None:intergenic |
| GGAAAATTGAAGTCTCGGGG+AGG | 0.715038 | 3.3:-80215799 | None:intergenic |
| GATTAAATCACATACCACCA+AGG | 0.720522 | 3.3:-80219188 | None:intergenic |
| GGTTTCGTCGTAGATGACAG+TGG | 0.734857 | 3.3:+80216092 | MS.gene049246:CDS |
| TCTACGACGAAACCAGCCGG+TGG | 0.756646 | 3.3:-80216083 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAAAAAAAATATTTTACA+GGG | + | chr3.3:80217919-80217938 | MS.gene049246:intron | 10.0% |
| !!! | TGTAAAATATTTTTTTTGTA+GGG | - | chr3.3:80217919-80217938 | None:intergenic | 10.0% |
| !!! | TTTTTATGAATATTATTGTT+AGG | + | chr3.3:80216386-80216405 | MS.gene049246:intron | 10.0% |
| !! | AAAACATATTAAATTAGATG+GGG | - | chr3.3:80218505-80218524 | None:intergenic | 15.0% |
| !! | AGAAAACATATTAAATTAGA+TGG | - | chr3.3:80218507-80218526 | None:intergenic | 15.0% |
| !! | GAAAACATATTAAATTAGAT+GGG | - | chr3.3:80218506-80218525 | None:intergenic | 15.0% |
| !! | TATTTATTAACTTTAGATTG+TGG | + | chr3.3:80216710-80216729 | MS.gene049246:intron | 15.0% |
| !!! | ACCTTTTAAGTTTTAAAAAT+AGG | + | chr3.3:80216857-80216876 | MS.gene049246:intron | 15.0% |
| !!! | CTACAAAAAAAATATTTTAC+AGG | + | chr3.3:80217918-80217937 | MS.gene049246:intron | 15.0% |
| !!! | CTGTAAAATATTTTTTTTGT+AGG | - | chr3.3:80217920-80217939 | None:intergenic | 15.0% |
| !!! | TCCTATTTTTAAAACTTAAA+AGG | - | chr3.3:80216861-80216880 | None:intergenic | 15.0% |
| !!! | TGTTTTTAATGTTTAATTCA+TGG | + | chr3.3:80216516-80216535 | MS.gene049246:intron | 15.0% |
| !!! | TTCTAAAGTCTATAAAAATA+AGG | + | chr3.3:80217120-80217139 | MS.gene049246:intron | 15.0% |
| !!! | TTTATATATCTAAGGTTTTA+GGG | + | chr3.3:80216555-80216574 | MS.gene049246:intron | 15.0% |
| !!! | TTTATATATTCAAGGTTTTA+GGG | + | chr3.3:80216906-80216925 | MS.gene049246:intron | 15.0% |
| !! | AAAAAAGATTATCAAAACCT+TGG | - | chr3.3:80216685-80216704 | None:intergenic | 20.0% |
| !! | AAACATATTAAATTAGATGG+GGG | - | chr3.3:80218504-80218523 | None:intergenic | 20.0% |
| !! | AAAGTCTATAAAAATAAGGA+TGG | + | chr3.3:80217124-80217143 | MS.gene049246:intron | 20.0% |
| !! | AATAATGATTCATAGAAGAA+AGG | - | chr3.3:80218354-80218373 | None:intergenic | 20.0% |
| !! | AGTTCAAAATTTAATTCTGT+TGG | - | chr3.3:80218384-80218403 | None:intergenic | 20.0% |
| !! | ATGTAGAATTACAACAAAAA+TGG | + | chr3.3:80215742-80215761 | MS.gene049246:CDS | 20.0% |
| !! | ATGTTATATTCAGATTATTG+TGG | + | chr3.3:80217682-80217701 | MS.gene049246:intron | 20.0% |
| !! | CAAAAAATTGTATATTTACC+AGG | + | chr3.3:80217948-80217967 | MS.gene049246:intron | 20.0% |
| !! | CAATATAATACTAAATTCAC+AGG | - | chr3.3:80218866-80218885 | None:intergenic | 20.0% |
| !! | GATTACAGTTTATATATCTA+AGG | + | chr3.3:80216547-80216566 | MS.gene049246:intron | 20.0% |
| !! | TATCATACTCGTTATAATTA+GGG | + | chr3.3:80217985-80218004 | MS.gene049246:intron | 20.0% |
| !! | TTATCATACTCGTTATAATT+AGG | + | chr3.3:80217984-80218003 | MS.gene049246:intron | 20.0% |
| !!! | ATTATGTATTTTTTCTGTTC+TGG | + | chr3.3:80216176-80216195 | MS.gene049246:intron | 20.0% |
| !!! | GTTGAGATTCTATATTTTAT+GGG | + | chr3.3:80217740-80217759 | MS.gene049246:intron | 20.0% |
| !!! | GTTTATATATCTAAGGTTTT+AGG | + | chr3.3:80216554-80216573 | MS.gene049246:intron | 20.0% |
| !!! | GTTTATATATTCAAGGTTTT+AGG | + | chr3.3:80216905-80216924 | MS.gene049246:intron | 20.0% |
| !!! | TAACACTATTTGAAATAAAG+CGG | + | chr3.3:80218555-80218574 | MS.gene049246:intron | 20.0% |
| !!! | TCTTATCATTGTTGTTTTTT+GGG | - | chr3.3:80215968-80215987 | None:intergenic | 20.0% |
| !!! | TGTTGAGATTCTATATTTTA+TGG | + | chr3.3:80217739-80217758 | MS.gene049246:intron | 20.0% |
| !!! | TTATATATCTAAGGTTTTAG+GGG | + | chr3.3:80216556-80216575 | MS.gene049246:intron | 20.0% |
| !!! | TTATATATTCAAGGTTTTAG+GGG | + | chr3.3:80216907-80216926 | MS.gene049246:intron | 20.0% |
| !!! | TTCTTATCATTGTTGTTTTT+TGG | - | chr3.3:80215969-80215988 | None:intergenic | 20.0% |
| ! | AAATTCAAAACTAACAAGTG+TGG | - | chr3.3:80216150-80216169 | None:intergenic | 25.0% |
| ! | AAGAATAACAACAAGAGTAA+TGG | + | chr3.3:80215993-80216012 | MS.gene049246:CDS | 25.0% |
| ! | ACAATCCACAGTTTATTTAT+TGG | + | chr3.3:80218891-80218910 | MS.gene049246:intron | 25.0% |
| ! | CATCTTTACCATCTAAAAAA+TGG | - | chr3.3:80218080-80218099 | None:intergenic | 25.0% |
| ! | GACAACCTAAATTAAAACTT+CGG | + | chr3.3:80217162-80217181 | MS.gene049246:intron | 25.0% |
| ! | GACAATTTCTTGTATGATTA+CGG | + | chr3.3:80216883-80216902 | MS.gene049246:intron | 25.0% |
| ! | GATTACGGTTTATATATTCA+AGG | + | chr3.3:80216898-80216917 | MS.gene049246:intron | 25.0% |
| ! | TAGAATTACAACAAAAATGG+CGG | + | chr3.3:80215745-80215764 | MS.gene049246:CDS | 25.0% |
| ! | TCATTGCTGACAATTTAAAT+AGG | + | chr3.3:80216834-80216853 | MS.gene049246:intron | 25.0% |
| ! | TGCCAATTAGAAAAAAATGT+AGG | - | chr3.3:80218795-80218814 | None:intergenic | 25.0% |
| !! | AAACATCAGCCATTAAATTT+TGG | - | chr3.3:80218056-80218075 | None:intergenic | 25.0% |
| !! | AAATCAAATGCATTTTACAG+TGG | + | chr3.3:80218820-80218839 | MS.gene049246:intron | 25.0% |
| !! | AACATCAGCCATTAAATTTT+GGG | - | chr3.3:80218055-80218074 | None:intergenic | 25.0% |
| !! | AATAAATAAACTGTGGATTG+TGG | - | chr3.3:80218892-80218911 | None:intergenic | 25.0% |
| !! | ACCAAAGAAAAATGTTACTT+TGG | - | chr3.3:80219216-80219235 | None:intergenic | 25.0% |
| !! | CACTAAAGTCAAAATTGTTT+TGG | - | chr3.3:80217007-80217026 | None:intergenic | 25.0% |
| !! | CTAAAAGCTTGAAATTTGTT+TGG | + | chr3.3:80217809-80217828 | MS.gene049246:intron | 25.0% |
| !! | GCTAATTTCATTTTATGAAC+AGG | + | chr3.3:80219108-80219127 | MS.gene049246:intron | 25.0% |
| !! | TAAAAATTAGCTTACTTCGT+TGG | + | chr3.3:80218297-80218316 | MS.gene049246:intron | 25.0% |
| !! | TATAAAAGGAGTGTACAAAA+TGG | - | chr3.3:80216952-80216971 | None:intergenic | 25.0% |
| !! | TCCAAAGTAACATTTTTCTT+TGG | + | chr3.3:80219212-80219231 | MS.gene049246:intron | 25.0% |
| !! | TGTTTTCTTTCCATGTTTTT+AGG | + | chr3.3:80217350-80217369 | MS.gene049246:intron | 25.0% |
| !! | TTTTTAGATGGTAAAGATGA+TGG | + | chr3.3:80218081-80218100 | MS.gene049246:intron | 25.0% |
| !!! | AAAATAAGGATGGTTTTGTA+AGG | + | chr3.3:80217134-80217153 | MS.gene049246:intron | 25.0% |
| !!! | ATTTGCCGAAGTTTTAATTT+AGG | - | chr3.3:80217170-80217189 | None:intergenic | 25.0% |
| !!! | CTCCTACATTTTTTTCTAAT+TGG | + | chr3.3:80218790-80218809 | MS.gene049246:intron | 25.0% |
| !!! | CTTTAGAACTTTATATGCAA+TGG | - | chr3.3:80217108-80217127 | None:intergenic | 25.0% |
| !!! | GATGTTTTCCATTTTTTAGA+TGG | + | chr3.3:80218069-80218088 | MS.gene049246:intron | 25.0% |
| AAAATGAAATTAGCGACACA+AGG | - | chr3.3:80219102-80219121 | None:intergenic | 30.0% | |
| AAAGGAAAGCAAACATGATT+GGG | - | chr3.3:80218336-80218355 | None:intergenic | 30.0% | |
| AAATGAAATTAGCGACACAA+GGG | - | chr3.3:80219101-80219120 | None:intergenic | 30.0% | |
| AAATTCAGTCTCTTCATCTA+TGG | - | chr3.3:80219164-80219183 | None:intergenic | 30.0% | |
| AACAAGAGTAATGGTGAAAT+TGG | + | chr3.3:80216002-80216021 | MS.gene049246:CDS | 30.0% | |
| AATCAGATGCATTCGTAATT+TGG | - | chr3.3:80217427-80217446 | None:intergenic | 30.0% | |
| ACAACGACTACAAAAACAAA+AGG | - | chr3.3:80217307-80217326 | None:intergenic | 30.0% | |
| AGAACTTTATATGCAATGGT+TGG | - | chr3.3:80217104-80217123 | None:intergenic | 30.0% | |
| AGAAGAATTGGAAATGGAAT+TGG | - | chr3.3:80216033-80216052 | None:intergenic | 30.0% | |
| AGTATACCAATGCAAATTTG+AGG | - | chr3.3:80218260-80218279 | None:intergenic | 30.0% | |
| ATACAAATATTACAGAGCAC+AGG | + | chr3.3:80216751-80216770 | MS.gene049246:CDS | 30.0% | |
| ATTGGACACCCAAAATTTAA+TGG | + | chr3.3:80218044-80218063 | MS.gene049246:intron | 30.0% | |
| CATGTCCAATAAATAAACTG+TGG | - | chr3.3:80218899-80218918 | None:intergenic | 30.0% | |
| CGGTTTCTAAATCATATGTA+TGG | + | chr3.3:80216588-80216607 | MS.gene049246:intron | 30.0% | |
| GAATGCATCTGATTTATAGT+GGG | + | chr3.3:80217433-80217452 | MS.gene049246:CDS | 30.0% | |
| GATCATAAATTTATCCTTGC+AGG | + | chr3.3:80218940-80218959 | MS.gene049246:intron | 30.0% | |
| GTGCTCTGTAATATTTGTAT+AGG | - | chr3.3:80216751-80216770 | None:intergenic | 30.0% | |
| TACACTGATCAGAAATACAT+GGG | - | chr3.3:80219053-80219072 | None:intergenic | 30.0% | |
| TATGAATCGAATTATGCAAG+TGG | + | chr3.3:80216239-80216258 | MS.gene049246:intron | 30.0% | |
| TCTAACAAACTTGAATATGG+AGG | - | chr3.3:80218674-80218693 | None:intergenic | 30.0% | |
| TGACGATTTCTGTTATGTTA+AGG | + | chr3.3:80216280-80216299 | MS.gene049246:intron | 30.0% | |
| TGCTCTAACAAACTTGAATA+TGG | - | chr3.3:80218677-80218696 | None:intergenic | 30.0% | |
| TGCTTCATAACCATTTGAAT+TGG | + | chr3.3:80218026-80218045 | MS.gene049246:intron | 30.0% | |
| TTACACTGATCAGAAATACA+TGG | - | chr3.3:80219054-80219073 | None:intergenic | 30.0% | |
| TTATGTTAAGGCACAATCTT+TGG | + | chr3.3:80216292-80216311 | MS.gene049246:intron | 30.0% | |
| TTGACAGGAATATTATTGCA+GGG | + | chr3.3:80216325-80216344 | MS.gene049246:intron | 30.0% | |
| TTGTACAGCTGTACTATAAA+AGG | - | chr3.3:80216966-80216985 | None:intergenic | 30.0% | |
| TTTGACAGGAATATTATTGC+AGG | + | chr3.3:80216324-80216343 | MS.gene049246:intron | 30.0% | |
| ! | ACTATTTGAAATAAAGCGGA+TGG | + | chr3.3:80218559-80218578 | MS.gene049246:intron | 30.0% |
| ! | ACTTATTGGAATTTTGTTGC+AGG | + | chr3.3:80218584-80218603 | MS.gene049246:intron | 30.0% |
| ! | AGATTTTATAGCTCACAACA+TGG | + | chr3.3:80217706-80217725 | MS.gene049246:intron | 30.0% |
| ! | ATGTATTTCTGATCAGTGTA+AGG | + | chr3.3:80219053-80219072 | MS.gene049246:intron | 30.0% |
| ! | CAAATGCATTTTATAGTGAC+CGG | + | chr3.3:80218756-80218775 | MS.gene049246:intron | 30.0% |
| ! | CATTTAACTTACATGTCAAG+TGG | - | chr3.3:80216498-80216517 | None:intergenic | 30.0% |
| ! | GATTGTGGAATTTTTACTAC+AGG | + | chr3.3:80216725-80216744 | MS.gene049246:intron | 30.0% |
| ! | TGTATTTCTGATCAGTGTAA+GGG | + | chr3.3:80219054-80219073 | MS.gene049246:intron | 30.0% |
| ! | TTTGGTAATTCTGATTTGAC+AGG | + | chr3.3:80216310-80216329 | MS.gene049246:intron | 30.0% |
| !!! | CATCTTTTTTGTTTATCCTC+TGG | - | chr3.3:80217665-80217684 | None:intergenic | 30.0% |
| !!! | GATAAGTATGTTTTTAGTCC+TGG | - | chr3.3:80217969-80217988 | None:intergenic | 30.0% |
| !!! | GTTTTTTGGGTTTTTGTTTC+TGG | - | chr3.3:80215955-80215974 | None:intergenic | 30.0% |
| AAAGGAAAATTGAAGTCTCG+GGG | - | chr3.3:80215805-80215824 | None:intergenic | 35.0% | |
| AACACTACGCTAAAAATCCA+AGG | + | chr3.3:80216665-80216684 | MS.gene049246:intron | 35.0% | |
| AGAAATCACACACTTCAATC+AGG | + | chr3.3:80218122-80218141 | MS.gene049246:CDS | 35.0% | |
| AGAATATTCACAAGTTCTCG+AGG | + | chr3.3:80216450-80216469 | MS.gene049246:CDS | 35.0% | |
| AGAGACTGAATTTAATGCCT+TGG | + | chr3.3:80219171-80219190 | MS.gene049246:CDS | 35.0% | |
| ATGCTTCTTTGGTTGAACAT+TGG | - | chr3.3:80215916-80215935 | None:intergenic | 35.0% | |
| CAAGCTTCTTACTTCTTCAA+TGG | + | chr3.3:80216115-80216134 | MS.gene049246:CDS | 35.0% | |
| CATCAGAGAGATTTCACATT+GGG | - | chr3.3:80216624-80216643 | None:intergenic | 35.0% | |
| CATGAGAAAAGACTGACATA+TGG | - | chr3.3:80217463-80217482 | None:intergenic | 35.0% | |
| CGAATGCATCTGATTTATAG+TGG | + | chr3.3:80217432-80217451 | MS.gene049246:CDS | 35.0% | |
| CGAGGTGAATAAATAGAAAC+AGG | - | chr3.3:80217852-80217871 | None:intergenic | 35.0% | |
| CGGTCACTATAAAATGCATT+TGG | - | chr3.3:80218758-80218777 | None:intergenic | 35.0% | |
| CTACATCCTCAAATTTGCAT+TGG | + | chr3.3:80218251-80218270 | MS.gene049246:intron | 35.0% | |
| CTGATACTTCAACTACGAAA+TGG | - | chr3.3:80216801-80216820 | None:intergenic | 35.0% | |
| GAAAGGAAAATTGAAGTCTC+GGG | - | chr3.3:80215806-80215825 | None:intergenic | 35.0% | |
| GAAAGGAAAGCAAACATGAT+TGG | - | chr3.3:80218337-80218356 | None:intergenic | 35.0% | |
| GAGAAAATGTCACAGGTAAA+TGG | - | chr3.3:80218731-80218750 | None:intergenic | 35.0% | |
| GAGATGATTGTATGTTGCTA+TGG | + | chr3.3:80216472-80216491 | MS.gene049246:CDS | 35.0% | |
| GATTAAATCACATACCACCA+AGG | - | chr3.3:80219191-80219210 | None:intergenic | 35.0% | |
| GATTACCTAATTGAACTGTG+AGG | - | chr3.3:80218193-80218212 | None:intergenic | 35.0% | |
| GGAAAACATACAGAAATGAG+TGG | - | chr3.3:80219253-80219272 | None:intergenic | 35.0% | |
| GGAAAGGAAAATTGAAGTCT+CGG | - | chr3.3:80215807-80215826 | None:intergenic | 35.0% | |
| GTGAAATCTCTCTGATGATT+TGG | + | chr3.3:80216627-80216646 | MS.gene049246:intron | 35.0% | |
| TAAAGCGGATGGTAACTTAT+TGG | + | chr3.3:80218570-80218589 | MS.gene049246:intron | 35.0% | |
| TCATCAGAGAGATTTCACAT+TGG | - | chr3.3:80216625-80216644 | None:intergenic | 35.0% | |
| TCGTAACTGACCTAAAAACA+TGG | - | chr3.3:80217363-80217382 | None:intergenic | 35.0% | |
| TCTATTTATTCACCTCGCTT+TGG | + | chr3.3:80217855-80217874 | MS.gene049246:intron | 35.0% | |
| TTATGAACAGGAATTGCTTG+AGG | + | chr3.3:80219120-80219139 | MS.gene049246:intron | 35.0% | |
| TTCGGCAAATCTTCATGAAA+TGG | + | chr3.3:80217180-80217199 | MS.gene049246:intron | 35.0% | |
| ! | AAAGGATTTTCCCATTAGCT+AGG | - | chr3.3:80217289-80217308 | None:intergenic | 35.0% |
| ! | AAATCGCTGATGATGTAAGT+AGG | + | chr3.3:80218981-80219000 | MS.gene049246:intron | 35.0% |
| ! | AATTAGCTTACTTCGTTGGA+TGG | + | chr3.3:80218301-80218320 | MS.gene049246:intron | 35.0% |
| ! | AATTTGAGGCAGAGAAGAAT+TGG | - | chr3.3:80216045-80216064 | None:intergenic | 35.0% |
| ! | ATTTTCCCATTAGCTAGGTT+TGG | - | chr3.3:80217284-80217303 | None:intergenic | 35.0% |
| ! | TTTTCCCATTAGCTAGGTTT+GGG | - | chr3.3:80217283-80217302 | None:intergenic | 35.0% |
| !! | ATTGAGTGTTGAATGAGGAA+AGG | - | chr3.3:80215823-80215842 | None:intergenic | 35.0% |
| !! | TGTAGGAGTACTTCAATTTC+CGG | - | chr3.3:80218778-80218797 | None:intergenic | 35.0% |
| !! | TTTTGGGTGTCCAATTCAAA+TGG | - | chr3.3:80218039-80218058 | None:intergenic | 35.0% |
| !!! | ATGTTTTTAGGTCAGTTACG+AGG | + | chr3.3:80217362-80217381 | MS.gene049246:intron | 35.0% |
| !!! | TGGATTTTTAGCGTAGTGTT+GGG | - | chr3.3:80216665-80216684 | None:intergenic | 35.0% |
| !!! | TTGGATTTTTAGCGTAGTGT+TGG | - | chr3.3:80216666-80216685 | None:intergenic | 35.0% |
| !!! | TTTTGGGTTTTTGTTTCTGG+TGG | - | chr3.3:80215952-80215971 | None:intergenic | 35.0% |
| AACTAACAAGTGTGGCAAGT+CGG | - | chr3.3:80216142-80216161 | None:intergenic | 40.0% | |
| ACAAAAAGCAGTGGATCAGA+CGG | - | chr3.3:80218636-80218655 | None:intergenic | 40.0% | |
| AGGCAGAGAAGAATTGGAAA+TGG | - | chr3.3:80216039-80216058 | None:intergenic | 40.0% | |
| ATATTACAGAGCACAGGTGA+TGG | + | chr3.3:80216757-80216776 | MS.gene049246:CDS | 40.0% | |
| ATGTACCCAAACCTAGCTAA+TGG | + | chr3.3:80217275-80217294 | MS.gene049246:intron | 40.0% | |
| CTATTGCCTCTGTTAAACAG+TGG | + | chr3.3:80218698-80218717 | MS.gene049246:intron | 40.0% | |
| GAAGAAGGAGAATGCTTCTT+TGG | - | chr3.3:80215927-80215946 | None:intergenic | 40.0% | |
| GACTGAATTTAATGCCTTGG+TGG | + | chr3.3:80219174-80219193 | MS.gene049246:CDS | 40.0% | |
| GGAGGAAGGATAAACATTCA+AGG | - | chr3.3:80215781-80215800 | None:intergenic | 40.0% | |
| GTTCTAACTTCTAACACCAG+AGG | + | chr3.3:80217646-80217665 | MS.gene049246:intron | 40.0% | |
| TGGTAGAGAGAAAATGTCAC+AGG | - | chr3.3:80218738-80218757 | None:intergenic | 40.0% | |
| TGTACCCAAACCTAGCTAAT+GGG | + | chr3.3:80217276-80217295 | MS.gene049246:intron | 40.0% | |
| TTATCACGCATTCCAAAGGA+AGG | - | chr3.3:80216428-80216447 | None:intergenic | 40.0% | |
| TTATCCTTGCAGGATCAGAA+TGG | + | chr3.3:80218950-80218969 | MS.gene049246:intron | 40.0% | |
| ! | AATAGAAACAGGCTCTGACT+AGG | - | chr3.3:80217841-80217860 | None:intergenic | 40.0% |
| ! | AGATGGTAAAGATGATGGCT+TGG | + | chr3.3:80218086-80218105 | MS.gene049246:intron | 40.0% |
| ! | GACATCTTTGACTTTCATGC+AGG | + | chr3.3:80217590-80217609 | MS.gene049246:CDS | 40.0% |
| ! | GTATGTTTTCCCTTACACAC+AGG | + | chr3.3:80219262-80219281 | MS.gene049246:intron | 40.0% |
| ! | TTTTACCCAACAGTGAGTCA+AGG | - | chr3.3:80219304-80219323 | None:intergenic | 40.0% |
| !! | AGATAATGGGTTGAAAGCGA+GGG | - | chr3.3:80215884-80215903 | None:intergenic | 40.0% |
| !! | ATTGGAAGCGCTAGAGATAA+TGG | - | chr3.3:80215898-80215917 | None:intergenic | 40.0% |
| !! | GGTTGATTGAGTGTTGAATG+AGG | - | chr3.3:80215828-80215847 | None:intergenic | 40.0% |
| !! | TATGATCAGCTCTAGAACAC+TGG | - | chr3.3:80218927-80218946 | None:intergenic | 40.0% |
| !! | TTCCTTTGGAATGCGTGATA+AGG | + | chr3.3:80216427-80216446 | MS.gene049246:CDS | 40.0% |
| !! | TTGGAAGCGCTAGAGATAAT+GGG | - | chr3.3:80215897-80215916 | None:intergenic | 40.0% |
| !! | TTGTTTCTGGTGGATGAAGA+AGG | - | chr3.3:80215942-80215961 | None:intergenic | 40.0% |
| AAGCATGGCATGGACATAGT+AGG | - | chr3.3:80217076-80217095 | None:intergenic | 45.0% | |
| AGCATGGCATGGACATAGTA+GGG | - | chr3.3:80217075-80217094 | None:intergenic | 45.0% | |
| CATTCCATTCTGATCCTGCA+AGG | - | chr3.3:80218957-80218976 | None:intergenic | 45.0% | |
| CGCATCCTCACAGTTCAATT+AGG | + | chr3.3:80218185-80218204 | MS.gene049246:intron | 45.0% | |
| CTCCTTATCACGCATTCCAA+AGG | - | chr3.3:80216432-80216451 | None:intergenic | 45.0% | |
| CTTCTTCCTCCTGTGTGTAA+GGG | - | chr3.3:80219274-80219293 | None:intergenic | 45.0% | |
| GAAATACATGGGAGCTGAGA+AGG | - | chr3.3:80219042-80219061 | None:intergenic | 45.0% | |
| GGGAGCTGAGAAGGAAATAA+TGG | - | chr3.3:80219033-80219052 | None:intergenic | 45.0% | |
| GTGATGCCACTGTTTAACAG+AGG | - | chr3.3:80218707-80218726 | None:intergenic | 45.0% | |
| TCCAAAGGAAGGTTGTTAGC+AGG | - | chr3.3:80216417-80216436 | None:intergenic | 45.0% | |
| TCCTGCTAACAACCTTCCTT+TGG | + | chr3.3:80216413-80216432 | MS.gene049246:CDS | 45.0% | |
| TCGAATTATGCAAGTGGCTG+TGG | + | chr3.3:80216245-80216264 | MS.gene049246:intron | 45.0% | |
| TTAGATGGGGGAAAATGCAC+AGG | - | chr3.3:80218492-80218511 | None:intergenic | 45.0% | |
| TTTGCAGCGACAAAAAGCAG+TGG | - | chr3.3:80218645-80218664 | None:intergenic | 45.0% | |
| ! | AGATACTGTTTTACCGCTCG+TGG | + | chr3.3:80217545-80217564 | MS.gene049246:intron | 45.0% |
| ! | TGTTTTCCCTTACACACAGG+AGG | + | chr3.3:80219265-80219284 | MS.gene049246:intron | 45.0% |
| ! | TTTAGCGTAGTGTTGGGTCA+CGG | - | chr3.3:80216659-80216678 | None:intergenic | 45.0% |
| !! | GAGATAATGGGTTGAAAGCG+AGG | - | chr3.3:80215885-80215904 | None:intergenic | 45.0% |
| !!! | ACTGCTTTTTGTCGCTGCAA+AGG | + | chr3.3:80218644-80218663 | MS.gene049246:CDS | 45.0% |
| !!! | GGTTTTAGGGGTGAAAGAAG+TGG | + | chr3.3:80216919-80216938 | MS.gene049246:intron | 45.0% |
| AAATTGAAGTCTCGGGGAGG+AGG | - | chr3.3:80215799-80215818 | None:intergenic | 50.0% | |
| AGTGAGAACGATGAGAAGCG+TGG | - | chr3.3:80215849-80215868 | None:intergenic | 50.0% | |
| ATCGCCATCAGAGAGTTCAG+AGG | - | chr3.3:80217892-80217911 | None:intergenic | 50.0% | |
| CAACAGTGAGTCAAGGAGTG+CGG | - | chr3.3:80219297-80219316 | None:intergenic | 50.0% | |
| GCAAGTGCAAAAGAAGCAGC+AGG | - | chr3.3:80217405-80217424 | None:intergenic | 50.0% | |
| GCACTCCTTGACTCACTGTT+GGG | + | chr3.3:80219296-80219315 | MS.gene049246:CDS | 50.0% | |
| GCCAGACTCTGTAATGAGTG+GGG | - | chr3.3:80219011-80219030 | None:intergenic | 50.0% | |
| GCTTCTTCCTCCTGTGTGTA+AGG | - | chr3.3:80219275-80219294 | None:intergenic | 50.0% | |
| GGAAAATTGAAGTCTCGGGG+AGG | - | chr3.3:80215802-80215821 | None:intergenic | 50.0% | |
| GGCCAGACTCTGTAATGAGT+GGG | - | chr3.3:80219012-80219031 | None:intergenic | 50.0% | |
| GGTTTCGTCGTAGATGACAG+TGG | + | chr3.3:80216092-80216111 | MS.gene049246:CDS | 50.0% | |
| GTAACAAAAACCGCCACGAG+CGG | - | chr3.3:80217561-80217580 | None:intergenic | 50.0% | |
| TACGCCACTACCTAAACCAC+CGG | + | chr3.3:80216067-80216086 | MS.gene049246:CDS | 50.0% | |
| TCATCTACGACGAAACCAGC+CGG | - | chr3.3:80216089-80216108 | None:intergenic | 50.0% | |
| TCCCCACTCATTACAGAGTC+TGG | + | chr3.3:80219007-80219026 | MS.gene049246:intron | 50.0% | |
| TCTATGGCGCTAATGACAGC+AGG | - | chr3.3:80219148-80219167 | None:intergenic | 50.0% | |
| TGGCCAGACTCTGTAATGAG+TGG | - | chr3.3:80219013-80219032 | None:intergenic | 50.0% | |
| ! | AGATGATGGCTTGGCAACTG+AGG | + | chr3.3:80218095-80218114 | MS.gene049246:CDS | 50.0% |
| ! | CAATGGTTGGCTGTGAAGCA+TGG | - | chr3.3:80217091-80217110 | None:intergenic | 50.0% |
| ! | GATGATGGCTTGGCAACTGA+GGG | + | chr3.3:80218096-80218115 | MS.gene049246:CDS | 50.0% |
| ! | GGTAGTGGCGTAGGAATTTG+AGG | - | chr3.3:80216059-80216078 | None:intergenic | 50.0% |
| ! | TACTGTTTTACCGCTCGTGG+CGG | + | chr3.3:80217548-80217567 | MS.gene049246:CDS | 50.0% |
| ! | TTAGCGTAGTGTTGGGTCAC+GGG | - | chr3.3:80216658-80216677 | None:intergenic | 50.0% |
| !! | TACAGAGCACAGGTGATGGA+TGG | + | chr3.3:80216761-80216780 | MS.gene049246:CDS | 50.0% |
| !!! | GGTTTTAGGGGTGAAAGACG+CGG | + | chr3.3:80216568-80216587 | MS.gene049246:intron | 50.0% |
| ACGAAACCAGCCGGTGGTTT+AGG | - | chr3.3:80216080-80216099 | None:intergenic | 55.0% | |
| CGCACTCCTTGACTCACTGT+TGG | + | chr3.3:80219295-80219314 | MS.gene049246:CDS | 55.0% | |
| GCCACCTCTGAACTCTCTGA+TGG | + | chr3.3:80217885-80217904 | MS.gene049246:intron | 55.0% | |
| GCCATCAGAGAGTTCAGAGG+TGG | - | chr3.3:80217889-80217908 | None:intergenic | 55.0% | |
| GTGGCTTCGAAACCAAAGCG+AGG | - | chr3.3:80217870-80217889 | None:intergenic | 55.0% | |
| GTTGGCTGTGAAGCATGGCA+TGG | - | chr3.3:80217086-80217105 | None:intergenic | 55.0% | |
| ! | GGTGGTTTAGGTAGTGGCGT+AGG | - | chr3.3:80216068-80216087 | None:intergenic | 55.0% |
| CCACTACCTAAACCACCGGC+TGG | + | chr3.3:80216071-80216090 | MS.gene049246:CDS | 60.0% | |
| CCAGCCGGTGGTTTAGGTAG+TGG | - | chr3.3:80216074-80216093 | None:intergenic | 60.0% | |
| TCTACGACGAAACCAGCCGG+TGG | - | chr3.3:80216086-80216105 | None:intergenic | 60.0% | |
| TGAAGTCTCGGGGAGGAGGA+AGG | - | chr3.3:80215795-80215814 | None:intergenic | 60.0% | |
| ! | GCGTAGTGTTGGGTCACGGG+AGG | - | chr3.3:80216655-80216674 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 80215714 | 80219328 | 80215714 | ID=MS.gene049246 |
| chr3.3 | mRNA | 80215714 | 80219328 | 80215714 | ID=MS.gene049246.t1;Parent=MS.gene049246 |
| chr3.3 | exon | 80215714 | 80216154 | 80215714 | ID=MS.gene049246.t1.exon1;Parent=MS.gene049246.t1 |
| chr3.3 | CDS | 80215714 | 80216154 | 80215714 | ID=cds.MS.gene049246.t1;Parent=MS.gene049246.t1 |
| chr3.3 | exon | 80216408 | 80216505 | 80216408 | ID=MS.gene049246.t1.exon2;Parent=MS.gene049246.t1 |
| chr3.3 | CDS | 80216408 | 80216505 | 80216408 | ID=cds.MS.gene049246.t1;Parent=MS.gene049246.t1 |
| chr3.3 | exon | 80216747 | 80216789 | 80216747 | ID=MS.gene049246.t1.exon3;Parent=MS.gene049246.t1 |
| chr3.3 | CDS | 80216747 | 80216789 | 80216747 | ID=cds.MS.gene049246.t1;Parent=MS.gene049246.t1 |
| chr3.3 | exon | 80217372 | 80217454 | 80217372 | ID=MS.gene049246.t1.exon4;Parent=MS.gene049246.t1 |
| chr3.3 | CDS | 80217372 | 80217454 | 80217372 | ID=cds.MS.gene049246.t1;Parent=MS.gene049246.t1 |
| chr3.3 | exon | 80217547 | 80217611 | 80217547 | ID=MS.gene049246.t1.exon5;Parent=MS.gene049246.t1 |
| chr3.3 | CDS | 80217547 | 80217611 | 80217547 | ID=cds.MS.gene049246.t1;Parent=MS.gene049246.t1 |
| chr3.3 | exon | 80218088 | 80218143 | 80218088 | ID=MS.gene049246.t1.exon6;Parent=MS.gene049246.t1 |
| chr3.3 | CDS | 80218088 | 80218143 | 80218088 | ID=cds.MS.gene049246.t1;Parent=MS.gene049246.t1 |
| chr3.3 | exon | 80218606 | 80218665 | 80218606 | ID=MS.gene049246.t1.exon7;Parent=MS.gene049246.t1 |
| chr3.3 | CDS | 80218606 | 80218665 | 80218606 | ID=cds.MS.gene049246.t1;Parent=MS.gene049246.t1 |
| chr3.3 | exon | 80218962 | 80218994 | 80218962 | ID=MS.gene049246.t1.exon8;Parent=MS.gene049246.t1 |
| chr3.3 | CDS | 80218962 | 80218994 | 80218962 | ID=cds.MS.gene049246.t1;Parent=MS.gene049246.t1 |
| chr3.3 | exon | 80219130 | 80219195 | 80219130 | ID=MS.gene049246.t1.exon9;Parent=MS.gene049246.t1 |
| chr3.3 | CDS | 80219130 | 80219195 | 80219130 | ID=cds.MS.gene049246.t1;Parent=MS.gene049246.t1 |
| chr3.3 | exon | 80219284 | 80219328 | 80219284 | ID=MS.gene049246.t1.exon10;Parent=MS.gene049246.t1 |
| chr3.3 | CDS | 80219284 | 80219328 | 80219284 | ID=cds.MS.gene049246.t1;Parent=MS.gene049246.t1 |
| Gene Sequence |
| Protein sequence |
