Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45431.t1 | XP_013443965.1 | 97.7 | 220 | 5 | 0 | 1 | 220 | 96 | 315 | 1.30E-121 | 445.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45431.t1 | Q2JJQ0 | 48.5 | 202 | 90 | 5 | 1 | 202 | 34 | 221 | 1.9e-44 | 180.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45431.t1 | A0A072TKN9 | 97.7 | 220 | 5 | 0 | 1 | 220 | 96 | 315 | 9.3e-122 | 445.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049246 | MS.gene45431 | 0.801323 | 9.51E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene45431 | 0.847895 | 8.66E-60 | -1.69E-46 |
| MS.gene050301 | MS.gene45431 | 0.847619 | 1.03E-59 | -1.69E-46 |
| MS.gene050593 | MS.gene45431 | 0.800724 | 1.26E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene45431 | 0.805362 | 1.38E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene45431 | 0.818826 | 1.60E-52 | -1.69E-46 |
| MS.gene050783 | MS.gene45431 | 0.800886 | 1.17E-48 | -1.69E-46 |
| MS.gene05101 | MS.gene45431 | 0.815727 | 7.97E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene45431 | 0.810559 | 1.09E-50 | -1.69E-46 |
| MS.gene051255 | MS.gene45431 | 0.820452 | 6.81E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene45431 | 0.842644 | 2.28E-58 | -1.69E-46 |
| MS.gene051525 | MS.gene45431 | 0.832315 | 1.01E-55 | -1.69E-46 |
| MS.gene051582 | MS.gene45431 | 0.815441 | 9.23E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene45431 | 0.808589 | 2.88E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene45431 | 0.802826 | 4.67E-49 | -1.69E-46 |
| MS.gene051877 | MS.gene45431 | 0.814606 | 1.41E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene45431 | -0.806173 | 9.35E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene45431 | 0.830216 | 3.33E-55 | -1.69E-46 |
| MS.gene052322 | MS.gene45431 | 0.811996 | 5.29E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene45431 | 0.818529 | 1.87E-52 | -1.69E-46 |
| MS.gene052481 | MS.gene45431 | 0.824908 | 6.26E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene45431 | 0.815262 | 1.01E-51 | -1.69E-46 |
| MS.gene052982 | MS.gene45431 | 0.820908 | 5.35E-53 | -1.69E-46 |
| MS.gene054010 | MS.gene45431 | 0.811891 | 5.58E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene45431 | 0.815529 | 8.82E-52 | -1.69E-46 |
| MS.gene054012 | MS.gene45431 | 0.81656 | 5.19E-52 | -1.69E-46 |
| MS.gene054013 | MS.gene45431 | 0.812401 | 4.32E-51 | -1.69E-46 |
| MS.gene05455 | MS.gene45431 | 0.812846 | 3.45E-51 | -1.69E-46 |
| MS.gene054802 | MS.gene45431 | 0.802052 | 6.74E-49 | -1.69E-46 |
| MS.gene054920 | MS.gene45431 | 0.801911 | 7.20E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene45431 | 0.800839 | 1.19E-48 | -1.69E-46 |
| MS.gene055390 | MS.gene45431 | 0.813051 | 3.11E-51 | -1.69E-46 |
| MS.gene055412 | MS.gene45431 | 0.802833 | 4.65E-49 | -1.69E-46 |
| MS.gene055564 | MS.gene45431 | 0.803997 | 2.67E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene45431 | 0.802039 | 6.78E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene45431 | 0.817054 | 4.02E-52 | -1.69E-46 |
| MS.gene056410 | MS.gene45431 | 0.809053 | 2.29E-50 | -1.69E-46 |
| MS.gene056452 | MS.gene45431 | 0.833398 | 5.46E-56 | -1.69E-46 |
| MS.gene056796 | MS.gene45431 | 0.807002 | 6.25E-50 | -1.69E-46 |
| MS.gene056846 | MS.gene45431 | 0.819176 | 1.33E-52 | -1.69E-46 |
| MS.gene056902 | MS.gene45431 | 0.807497 | 4.91E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene45431 | 0.819882 | 9.20E-53 | -1.69E-46 |
| MS.gene057146 | MS.gene45431 | 0.82016 | 7.94E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene45431 | 0.836329 | 9.98E-57 | -1.69E-46 |
| MS.gene058293 | MS.gene45431 | 0.80298 | 4.34E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene45431 | 0.806747 | 7.08E-50 | -1.69E-46 |
| MS.gene05842 | MS.gene45431 | 0.815477 | 9.06E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene45431 | 0.839481 | 1.54E-57 | -1.69E-46 |
| MS.gene058700 | MS.gene45431 | 0.844861 | 5.82E-59 | -1.69E-46 |
| MS.gene05883 | MS.gene45431 | 0.801503 | 8.73E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene45431 | 0.811353 | 7.30E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene45431 | 0.847167 | 1.37E-59 | -1.69E-46 |
| MS.gene059141 | MS.gene45431 | 0.825842 | 3.76E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene45431 | 0.808017 | 3.81E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene45431 | 0.838037 | 3.65E-57 | -1.69E-46 |
| MS.gene059676 | MS.gene45431 | 0.803694 | 3.08E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene45431 | 0.826359 | 2.83E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene45431 | 0.806175 | 9.35E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene45431 | 0.810865 | 9.32E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene45431 | 0.802565 | 5.28E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene45431 | 0.809818 | 1.57E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene45431 | 0.816759 | 4.69E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene45431 | 0.80923 | 2.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45431.t1 | MTR_8g009680 | 97.727 | 220 | 5 | 0 | 1 | 220 | 96 | 315 | 5.73e-162 | 450 |
| MS.gene45431.t1 | MTR_8g009700 | 89.640 | 222 | 21 | 1 | 1 | 222 | 61 | 280 | 5.13e-148 | 413 |
| MS.gene45431.t1 | MTR_6g018680 | 42.347 | 196 | 104 | 4 | 25 | 219 | 479 | 666 | 3.08e-43 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45431.t1 | AT5G17660 | 66.816 | 223 | 68 | 2 | 1 | 222 | 91 | 308 | 1.83e-113 | 327 |
| MS.gene45431.t1 | AT5G24840 | 28.512 | 242 | 128 | 11 | 5 | 219 | 23 | 246 | 1.54e-12 | 65.1 |
Find 57 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTAAAGTGAGAAATTATT+TGG | 0.126545 | 8.4:-78301002 | MS.gene45431:CDS |
| CTTGCAGTTAGTTTCAATTT+TGG | 0.187587 | 8.4:-78300621 | MS.gene45431:intron |
| CCCAAATAATTTCTCACTTT+AGG | 0.263184 | 8.4:+78301001 | None:intergenic |
| TCAATCACATCTGCTTCTTT+TGG | 0.314148 | 8.4:+78299888 | None:intergenic |
| TAAGCAACCCTATGGGGATT+AGG | 0.323830 | 8.4:-78299967 | MS.gene45431:CDS |
| ATTATTTGGGATTGGAAATA+CGG | 0.335361 | 8.4:-78300988 | MS.gene45431:CDS |
| CTGCCACTCATGGTGGATAT+TGG | 0.351376 | 8.4:-78301595 | MS.gene45431:CDS |
| TCACTGTCACACAATATAGA+AGG | 0.376117 | 8.4:+78300001 | None:intergenic |
| ACCAACTGCTTGAAAGAAAT+AGG | 0.378434 | 8.4:+78300662 | None:intergenic |
| TACAGAGAAAGAAGAACTTA+AGG | 0.390216 | 8.4:+78302820 | None:intergenic |
| AGTGAGAAATTATTTGGGAT+TGG | 0.396847 | 8.4:-78300996 | MS.gene45431:CDS |
| CCTAAAGTGAGAAATTATTT+GGG | 0.400944 | 8.4:-78301001 | MS.gene45431:CDS |
| GTGCATCAACTTCATCAAAC+TGG | 0.411217 | 8.4:+78300047 | None:intergenic |
| TGGTGAAGCGTGCTGAGTTA+TGG | 0.441715 | 8.4:-78300834 | MS.gene45431:CDS |
| ATTGTAGATAATTTATCTCC+TGG | 0.443117 | 8.4:-78300249 | MS.gene45431:CDS |
| ACCTATTTCTTTCAAGCAGT+TGG | 0.457053 | 8.4:-78300663 | MS.gene45431:CDS |
| GGTGAAGCGTGCTGAGTTAT+GGG | 0.461581 | 8.4:-78300833 | MS.gene45431:CDS |
| TCCACCATGAGTGGCAGAGC+AGG | 0.463070 | 8.4:+78301601 | None:intergenic |
| TTGTAGATAATTTATCTCCT+GGG | 0.470027 | 8.4:-78300248 | MS.gene45431:CDS |
| TTCCAGTCTGGTACTGGTGC+AGG | 0.472779 | 8.4:+78301640 | None:intergenic |
| ACAGAGAAAGAAGAACTTAA+GGG | 0.478265 | 8.4:+78302821 | None:intergenic |
| GGGATTGGAAATACGGCAAA+GGG | 0.483148 | 8.4:-78300981 | MS.gene45431:intron |
| AGACCCTGCTCTGCCACTCA+TGG | 0.484179 | 8.4:-78301605 | MS.gene45431:CDS |
| ACCTGGTTCCAGTCTGGTAC+TGG | 0.484249 | 8.4:+78301634 | None:intergenic |
| CTCTCAGTCCTAATCCCCAT+AGG | 0.490442 | 8.4:+78299959 | None:intergenic |
| ATGGTTATTAAGCAACCCTA+TGG | 0.492202 | 8.4:-78299975 | MS.gene45431:CDS |
| TGAGTTATGGGTAAAAGATC+TGG | 0.497316 | 8.4:-78300821 | MS.gene45431:CDS |
| GAAACTAACTGCAAGGGTCC+AGG | 0.506605 | 8.4:+78300629 | None:intergenic |
| GCAAACACCTGGTTCCAGTC+TGG | 0.508336 | 8.4:+78301628 | None:intergenic |
| GCAGTGGTAGGTTTCTTATG+TGG | 0.523016 | 8.4:-78301039 | MS.gene45431:CDS |
| CAGTTGGTAGAATCATATCC+TGG | 0.532880 | 8.4:-78300647 | MS.gene45431:CDS |
| TGGTTATTAAGCAACCCTAT+GGG | 0.534053 | 8.4:-78299974 | MS.gene45431:CDS |
| CTCCTGCACCAGTACCAGAC+TGG | 0.539916 | 8.4:-78301642 | MS.gene45431:CDS |
| TCTCAGTCCTAATCCCCATA+GGG | 0.549156 | 8.4:+78299960 | None:intergenic |
| CAAAATTGAAACTAACTGCA+AGG | 0.551890 | 8.4:+78300622 | None:intergenic |
| ATGGGTAAAAGATCTGGCTC+TGG | 0.555239 | 8.4:-78300815 | MS.gene45431:CDS |
| TGTAGATAATTTATCTCCTG+GGG | 0.562130 | 8.4:-78300247 | MS.gene45431:CDS |
| AAATAATGACAGGCAGTGGT+AGG | 0.578508 | 8.4:-78301051 | MS.gene45431:intron |
| TGGGATTGGAAATACGGCAA+AGG | 0.583272 | 8.4:-78300982 | MS.gene45431:CDS |
| GAGCAGGGTCTGCAAACACC+TGG | 0.584261 | 8.4:+78301617 | None:intergenic |
| CACTGTCACACAATATAGAA+GGG | 0.596542 | 8.4:+78300002 | None:intergenic |
| ACCAGTACCAGACTGGAACC+AGG | 0.600428 | 8.4:-78301635 | MS.gene45431:CDS |
| CTCATGGTGGATATTGGATG+TGG | 0.615858 | 8.4:-78301589 | MS.gene45431:intron |
| TTCATGCAGAATTCGAAGGA+GGG | 0.618770 | 8.4:-78299931 | MS.gene45431:CDS |
| GAGATTCATGCAGAATTCGA+AGG | 0.619717 | 8.4:-78299935 | MS.gene45431:CDS |
| AAAATTGAAACTAACTGCAA+GGG | 0.620397 | 8.4:+78300623 | None:intergenic |
| CCCTGCTCTGCCACTCATGG+TGG | 0.621197 | 8.4:-78301602 | MS.gene45431:CDS |
| CCACCATGAGTGGCAGAGCA+GGG | 0.630245 | 8.4:+78301602 | None:intergenic |
| ATTCATGCAGAATTCGAAGG+AGG | 0.630607 | 8.4:-78299932 | MS.gene45431:CDS |
| GGTTATTAAGCAACCCTATG+GGG | 0.641395 | 8.4:-78299973 | MS.gene45431:CDS |
| ACAGTCTGATGTGGTTGAAG+TGG | 0.648166 | 8.4:-78300086 | MS.gene45431:CDS |
| CATCCAATATCCACCATGAG+TGG | 0.650715 | 8.4:+78301592 | None:intergenic |
| GGTATTTGTACAGTCTGATG+TGG | 0.665592 | 8.4:-78300095 | MS.gene45431:CDS |
| TCTACAATAGCACCAACCAA+AGG | 0.670279 | 8.4:+78300264 | None:intergenic |
| TCTATATTGTGTGACAGTGA+AGG | 0.673502 | 8.4:-78299998 | MS.gene45431:CDS |
| TATTGTGTGACAGTGAAGGA+TGG | 0.681117 | 8.4:-78299994 | MS.gene45431:CDS |
| GTAGATAATTTATCTCCTGG+GGG | 0.693547 | 8.4:-78300246 | MS.gene45431:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACGTAAAATAAACATAA+GGG | + | chr8.4:78300483-78300502 | None:intergenic | 15.0% |
| !! | AACATATAACTTATAATGAA+TGG | + | chr8.4:78300456-78300475 | None:intergenic | 15.0% |
| !! | AATAAGAATAAACTACTAAA+GGG | + | chr8.4:78299989-78300008 | None:intergenic | 15.0% |
| !! | CTTGATATATAACATATTTA+TGG | - | chr8.4:78302543-78302562 | MS.gene45431:intron | 15.0% |
| !! | TAAAACGTAAAATAAACATA+AGG | + | chr8.4:78300484-78300503 | None:intergenic | 15.0% |
| !! | TATAAAACAGTTTAATACAA+TGG | - | chr8.4:78300039-78300058 | MS.gene45431:CDS | 15.0% |
| !! | TTCATTATAAGTTATATGTT+AGG | - | chr8.4:78300456-78300475 | MS.gene45431:intron | 15.0% |
| !!! | AACTTGAACATTTTAAATAT+AGG | + | chr8.4:78300516-78300535 | None:intergenic | 15.0% |
| !!! | ACTTGAACATTTTAAATATA+GGG | + | chr8.4:78300515-78300534 | None:intergenic | 15.0% |
| !!! | TATATTTAAAATGTTCAAGT+TGG | - | chr8.4:78300515-78300534 | MS.gene45431:intron | 15.0% |
| !!! | TCTTTTTTTTTTGTTTGTTT+TGG | + | chr8.4:78300403-78300422 | None:intergenic | 15.0% |
| !!! | TGGTTAAAATGTATATTTTT+TGG | - | chr8.4:78300836-78300855 | MS.gene45431:CDS | 15.0% |
| !! | AATTTAAATATTCAGCACAT+TGG | - | chr8.4:78302243-78302262 | MS.gene45431:intron | 20.0% |
| !! | AATTTGAAAGACTGATAAAT+GGG | - | chr8.4:78300331-78300350 | MS.gene45431:intron | 20.0% |
| !! | ACAAAATTACATGCTTTAAT+AGG | + | chr8.4:78300311-78300330 | None:intergenic | 20.0% |
| !! | ACAAAATTCGAGATAATTAA+AGG | + | chr8.4:78300230-78300249 | None:intergenic | 20.0% |
| !! | ACACCATTAATCAATTATAA+CGG | + | chr8.4:78300136-78300155 | None:intergenic | 20.0% |
| !! | ATAAGAATAAACTACTAAAG+GGG | + | chr8.4:78299988-78300007 | None:intergenic | 20.0% |
| !! | ATTAAACCTTATTCATTGTA+TGG | - | chr8.4:78300186-78300205 | MS.gene45431:intron | 20.0% |
| !! | ATTTAACCATACAATGAATA+AGG | + | chr8.4:78300195-78300214 | None:intergenic | 20.0% |
| !! | CAAAATTACATGCTTTAATA+GGG | + | chr8.4:78300310-78300329 | None:intergenic | 20.0% |
| !! | CCTTCACTATATTATATAAA+AGG | - | chr8.4:78300810-78300829 | MS.gene45431:CDS | 20.0% |
| !! | CTATATTATATAAAAGGTTG+TGG | - | chr8.4:78300816-78300835 | MS.gene45431:CDS | 20.0% |
| !! | GAATAAGAATAAACTACTAA+AGG | + | chr8.4:78299990-78300009 | None:intergenic | 20.0% |
| !! | GTTATCAAACTATATATATG+TGG | + | chr8.4:78300885-78300904 | None:intergenic | 20.0% |
| !! | TAATTTGAAAGACTGATAAA+TGG | - | chr8.4:78300330-78300349 | MS.gene45431:intron | 20.0% |
| !! | TGCTGAATATTTAAATTTGT+GGG | + | chr8.4:78302240-78302259 | None:intergenic | 20.0% |
| !!! | AAGAAAATGTAACTTTTCTA+GGG | - | chr8.4:78300370-78300389 | MS.gene45431:intron | 20.0% |
| !!! | ACTTTGATTATAAGATGTTT+TGG | + | chr8.4:78301366-78301385 | None:intergenic | 20.0% |
| !!! | ATCTCAATTTCATTGATAAT+TGG | - | chr8.4:78301182-78301201 | MS.gene45431:intron | 20.0% |
| !!! | CCTTTTATATAATATAGTGA+AGG | + | chr8.4:78300813-78300832 | None:intergenic | 20.0% |
| !!! | CTTGAACATTTTAAATATAG+GGG | + | chr8.4:78300514-78300533 | None:intergenic | 20.0% |
| !!! | GTTTATTTTACGTTTTAAGT+CGG | - | chr8.4:78300487-78300506 | MS.gene45431:intron | 20.0% |
| ! | AAAATTGAAACTAACTGCAA+GGG | + | chr8.4:78302126-78302145 | None:intergenic | 25.0% |
| ! | AACTATATATAAAACACCCT+TGG | + | chr8.4:78302384-78302403 | None:intergenic | 25.0% |
| ! | AAGCACTAAAAAGAGAAATT+GGG | - | chr8.4:78302161-78302180 | MS.gene45431:intron | 25.0% |
| ! | ACCTAAAGTGAGAAATTATT+TGG | - | chr8.4:78301744-78301763 | MS.gene45431:intron | 25.0% |
| ! | AGAAATCAAAATTTACTGGA+AGG | + | chr8.4:78301815-78301834 | None:intergenic | 25.0% |
| ! | AGAGTTAACTCAAAATTTGA+CGG | + | chr8.4:78300579-78300598 | None:intergenic | 25.0% |
| ! | ATAAACAAACCAGACATAAT+AGG | - | chr8.4:78300997-78301016 | MS.gene45431:CDS | 25.0% |
| ! | ATTGTAGATAATTTATCTCC+TGG | - | chr8.4:78302497-78302516 | MS.gene45431:intron | 25.0% |
| ! | CAATATACCATTCCTAAAAT+TGG | + | chr8.4:78300963-78300982 | None:intergenic | 25.0% |
| ! | CCTAAAGTGAGAAATTATTT+GGG | - | chr8.4:78301745-78301764 | MS.gene45431:intron | 25.0% |
| ! | GAAATCAAAATTTACTGGAA+GGG | + | chr8.4:78301814-78301833 | None:intergenic | 25.0% |
| ! | GAATTGGTATATGTAAAGAA+AGG | + | chr8.4:78299956-78299975 | None:intergenic | 25.0% |
| ! | GATGAGAAATCAAAATTTAC+TGG | + | chr8.4:78301819-78301838 | None:intergenic | 25.0% |
| ! | GTAAATAATCTTTACACTGA+CGG | - | chr8.4:78300154-78300173 | MS.gene45431:intron | 25.0% |
| ! | GTGCTGAATATTTAAATTTG+TGG | + | chr8.4:78302241-78302260 | None:intergenic | 25.0% |
| ! | TATGTGTGTGTAATTTACTT+TGG | + | chr8.4:78301995-78302014 | None:intergenic | 25.0% |
| ! | TGATTAGATACTAGTGTAAA+AGG | + | chr8.4:78300920-78300939 | None:intergenic | 25.0% |
| ! | TTAGGAATGGTATATTGATA+AGG | - | chr8.4:78300966-78300985 | MS.gene45431:intron | 25.0% |
| ! | TTGGTTCAATAAAACAGAAA+GGG | + | chr8.4:78301347-78301366 | None:intergenic | 25.0% |
| ! | TTGTAGATAATTTATCTCCT+GGG | - | chr8.4:78302498-78302517 | MS.gene45431:intron | 25.0% |
| !! | AAAGCACTAAAAAGAGAAAT+TGG | - | chr8.4:78302160-78302179 | MS.gene45431:intron | 25.0% |
| !! | ATTATTTGGGATTGGAAATA+CGG | - | chr8.4:78301758-78301777 | MS.gene45431:intron | 25.0% |
| !! | CAAGAAAATGTAACTTTTCT+AGG | - | chr8.4:78300369-78300388 | MS.gene45431:intron | 25.0% |
| !! | TCTAAAGTCAAACATAAGAT+TGG | + | chr8.4:78300075-78300094 | None:intergenic | 25.0% |
| !! | TGGCATCTAAATAAAGTTTT+CGG | + | chr8.4:78301975-78301994 | None:intergenic | 25.0% |
| !! | TGTTGTTTGAAAATAATGAC+AGG | - | chr8.4:78301685-78301704 | MS.gene45431:intron | 25.0% |
| !! | TTAGAACCTTTTTAAACGTA+GGG | - | chr8.4:78300737-78300756 | MS.gene45431:intron | 25.0% |
| !! | TTTGGTTCAATAAAACAGAA+AGG | + | chr8.4:78301348-78301367 | None:intergenic | 25.0% |
| !!! | AAAGATATTTTTATAGGAGC+TGG | - | chr8.4:78300418-78300437 | MS.gene45431:intron | 25.0% |
| !!! | ACAGTTTAATTTTGATACAC+TGG | - | chr8.4:78300013-78300032 | MS.gene45431:CDS | 25.0% |
| !!! | CATTTTTTCACACCAATTTT+AGG | - | chr8.4:78300948-78300967 | MS.gene45431:intron | 25.0% |
| !!! | GATGTTTTTTCTTGAAATGA+GGG | + | chr8.4:78302439-78302458 | None:intergenic | 25.0% |
| !!! | TGATGTTTTTTCTTGAAATG+AGG | + | chr8.4:78302440-78302459 | None:intergenic | 25.0% |
| AAAGAAATGCCTATTATGTC+TGG | + | chr8.4:78301009-78301028 | None:intergenic | 30.0% | |
| AAAGGGGAAAACAATTGAAT+TGG | + | chr8.4:78299972-78299991 | None:intergenic | 30.0% | |
| AATGCCAATCAATAACATGT+AGG | + | chr8.4:78301254-78301273 | None:intergenic | 30.0% | |
| ACAGAGAAAGAAGAACTTAA+GGG | + | chr8.4:78299928-78299947 | None:intergenic | 30.0% | |
| AGGCATGAAATATCACTAAA+AGG | + | chr8.4:78302580-78302599 | None:intergenic | 30.0% | |
| ATAATCATTAGACGAAAGCA+AGG | + | chr8.4:78301071-78301090 | None:intergenic | 30.0% | |
| ATGCATTTGTTCTTGATTGT+TGG | - | chr8.4:78301222-78301241 | MS.gene45431:intron | 30.0% | |
| ATTATCAACTTCCACATAGA+TGG | + | chr8.4:78301293-78301312 | None:intergenic | 30.0% | |
| CAAAATTGAAACTAACTGCA+AGG | + | chr8.4:78302127-78302146 | None:intergenic | 30.0% | |
| CCACCGTTATAATTGATTAA+TGG | - | chr8.4:78300130-78300149 | MS.gene45431:intron | 30.0% | |
| CCATTAATCAATTATAACGG+TGG | + | chr8.4:78300133-78300152 | None:intergenic | 30.0% | |
| CCCAAATAATTTCTCACTTT+AGG | + | chr8.4:78301748-78301767 | None:intergenic | 30.0% | |
| GAAACCTAAAATAGAGGTAA+GGG | - | chr8.4:78300769-78300788 | MS.gene45431:intron | 30.0% | |
| GGCATGAAATATCACTAAAA+GGG | + | chr8.4:78302579-78302598 | None:intergenic | 30.0% | |
| TAATCATTAGACGAAAGCAA+GGG | + | chr8.4:78301070-78301089 | None:intergenic | 30.0% | |
| TACAGAGAAAGAAGAACTTA+AGG | + | chr8.4:78299929-78299948 | None:intergenic | 30.0% | |
| TATAACAATGTCGACAATTG+TGG | + | chr8.4:78301598-78301617 | None:intergenic | 30.0% | |
| TGAAACCTAAAATAGAGGTA+AGG | - | chr8.4:78300768-78300787 | MS.gene45431:intron | 30.0% | |
| TGAAGGCTAAATTGTATGTT+TGG | + | chr8.4:78300796-78300815 | None:intergenic | 30.0% | |
| TGTAGATAATTTATCTCCTG+GGG | - | chr8.4:78302499-78302518 | MS.gene45431:intron | 30.0% | |
| TTAAATATTCAGCACATTGG+TGG | - | chr8.4:78302246-78302265 | MS.gene45431:intron | 30.0% | |
| TTAGCCTACATGTTATTGAT+TGG | - | chr8.4:78301247-78301266 | MS.gene45431:intron | 30.0% | |
| ! | AGTGAGAAATTATTTGGGAT+TGG | - | chr8.4:78301750-78301769 | MS.gene45431:intron | 30.0% |
| ! | GTTAGAACCTTTTTAAACGT+AGG | - | chr8.4:78300736-78300755 | MS.gene45431:intron | 30.0% |
| ! | TACATGTTATTGATTGGCAT+TGG | - | chr8.4:78301253-78301272 | MS.gene45431:intron | 30.0% |
| ! | TAGAACCTTTTTAAACGTAG+GGG | - | chr8.4:78300738-78300757 | MS.gene45431:intron | 30.0% |
| ! | TTTGATTTCTCATCCAGTTA+TGG | - | chr8.4:78301825-78301844 | MS.gene45431:intron | 30.0% |
| !! | CTTGCAGTTAGTTTCAATTT+TGG | - | chr8.4:78302125-78302144 | MS.gene45431:intron | 30.0% |
| !! | TTATGTCTGGTTTGTTTATC+CGG | + | chr8.4:78300996-78301015 | None:intergenic | 30.0% |
| !! | TTTCACACCAATTTTAGGAA+TGG | - | chr8.4:78300953-78300972 | MS.gene45431:intron | 30.0% |
| AATCTCTTAAGTATTCTCGC+AGG | + | chr8.4:78302600-78302619 | None:intergenic | 35.0% | |
| ACCAACTGCTTGAAAGAAAT+AGG | + | chr8.4:78302087-78302106 | None:intergenic | 35.0% | |
| ACTTAAGGTTTGACATCCAA+GGG | - | chr8.4:78302365-78302384 | MS.gene45431:intron | 35.0% | |
| ATGGTTATTAAGCAACCCTA+TGG | - | chr8.4:78302771-78302790 | MS.gene45431:intron | 35.0% | |
| ATTTACCACATCCTGATGTT+AGG | + | chr8.4:78301417-78301436 | None:intergenic | 35.0% | |
| CACTGTCACACAATATAGAA+GGG | + | chr8.4:78302747-78302766 | None:intergenic | 35.0% | |
| CATAAACAATGAAAGGCAGA+AGG | + | chr8.4:78301040-78301059 | None:intergenic | 35.0% | |
| CTGCCTTTCATTGTTTATGA+GGG | - | chr8.4:78301041-78301060 | MS.gene45431:CDS | 35.0% | |
| GGTATATTGATAAGGAGAAC+CGG | - | chr8.4:78300974-78300993 | MS.gene45431:intron | 35.0% | |
| GTAGATAATTTATCTCCTGG+GGG | - | chr8.4:78302500-78302519 | MS.gene45431:intron | 35.0% | |
| GTCAAATAGAGGCTATTATG+AGG | - | chr8.4:78301524-78301543 | MS.gene45431:intron | 35.0% | |
| TAAGCTGAATGTACCATAAC+TGG | + | chr8.4:78301841-78301860 | None:intergenic | 35.0% | |
| TACTTAAGGTTTGACATCCA+AGG | - | chr8.4:78302364-78302383 | MS.gene45431:intron | 35.0% | |
| TAGTTAATGATTTCCCTCAC+CGG | - | chr8.4:78302399-78302418 | MS.gene45431:intron | 35.0% | |
| TCACTGTCACACAATATAGA+AGG | + | chr8.4:78302748-78302767 | None:intergenic | 35.0% | |
| TCTATATTGTGTGACAGTGA+AGG | - | chr8.4:78302748-78302767 | MS.gene45431:intron | 35.0% | |
| TCTGCCTTTCATTGTTTATG+AGG | - | chr8.4:78301040-78301059 | MS.gene45431:CDS | 35.0% | |
| TGAAAAAGACAACCACAAGA+GGG | + | chr8.4:78302629-78302648 | None:intergenic | 35.0% | |
| TGAGTTATGGGTAAAAGATC+TGG | - | chr8.4:78301925-78301944 | MS.gene45431:intron | 35.0% | |
| TGCCTTTCATTGTTTATGAG+GGG | - | chr8.4:78301042-78301061 | MS.gene45431:CDS | 35.0% | |
| TGGCTTGAAACCTAAAATAG+AGG | - | chr8.4:78300763-78300782 | MS.gene45431:intron | 35.0% | |
| TGGTTATTAAGCAACCCTAT+GGG | - | chr8.4:78302772-78302791 | MS.gene45431:intron | 35.0% | |
| TTGAAAATAATGACAGGCAG+TGG | - | chr8.4:78301691-78301710 | MS.gene45431:intron | 35.0% | |
| TTTACCACATCCTGATGTTA+GGG | + | chr8.4:78301416-78301435 | None:intergenic | 35.0% | |
| ! | AACTCTTTTACCCTAACATC+AGG | - | chr8.4:78301403-78301422 | MS.gene45431:intron | 35.0% |
| ! | ACCTATTTCTTTCAAGCAGT+TGG | - | chr8.4:78302083-78302102 | MS.gene45431:intron | 35.0% |
| ! | AGAACCTTTTTAAACGTAGG+GGG | - | chr8.4:78300739-78300758 | MS.gene45431:intron | 35.0% |
| ! | CGTAGTGGAATTTGAATCAA+TGG | - | chr8.4:78301468-78301487 | MS.gene45431:intron | 35.0% |
| ! | GGCTACATTGTTGTTACTTA+AGG | - | chr8.4:78302350-78302369 | MS.gene45431:intron | 35.0% |
| ! | TGACGAAATTTTGCTGACAT+TGG | + | chr8.4:78300553-78300572 | None:intergenic | 35.0% |
| ! | TTGTGGATTGAGGAAAATAG+CGG | + | chr8.4:78301581-78301600 | None:intergenic | 35.0% |
| ! | TTTTTCTTGAAATGAGGGTC+TGG | + | chr8.4:78302434-78302453 | None:intergenic | 35.0% |
| !! | TACAAAGCGTTGTCAAATAG+AGG | - | chr8.4:78301513-78301532 | MS.gene45431:intron | 35.0% |
| !! | TTATTGATTGGCATTGGCAT+TGG | - | chr8.4:78301259-78301278 | MS.gene45431:intron | 35.0% |
| AAATAATGACAGGCAGTGGT+AGG | - | chr8.4:78301695-78301714 | MS.gene45431:intron | 40.0% | |
| AAATAGCAGCTATAGCGTAG+TGG | - | chr8.4:78301453-78301472 | MS.gene45431:intron | 40.0% | |
| AATCCAGCCAACAAACCATT+AGG | + | chr8.4:78302196-78302215 | None:intergenic | 40.0% | |
| ACCCCCTCATAAACAATGAA+AGG | + | chr8.4:78301047-78301066 | None:intergenic | 40.0% | |
| ACTTTGATTCCATGTGCAGA+TGG | - | chr8.4:78301892-78301911 | MS.gene45431:intron | 40.0% | |
| ATTCATGCAGAATTCGAAGG+AGG | - | chr8.4:78302814-78302833 | MS.gene45431:intron | 40.0% | |
| ATTTGTGGGATTGTGACTAC+AGG | + | chr8.4:78302226-78302245 | None:intergenic | 40.0% | |
| GAGATTCATGCAGAATTCGA+AGG | - | chr8.4:78302811-78302830 | MS.gene45431:intron | 40.0% | |
| GCCTTTCATTGTTTATGAGG+GGG | - | chr8.4:78301043-78301062 | MS.gene45431:intron | 40.0% | |
| GGTATTTGTACAGTCTGATG+TGG | - | chr8.4:78302651-78302670 | MS.gene45431:intron | 40.0% | |
| GGTTATTAAGCAACCCTATG+GGG | - | chr8.4:78302773-78302792 | MS.gene45431:intron | 40.0% | |
| GTGAAAAAGACAACCACAAG+AGG | + | chr8.4:78302630-78302649 | None:intergenic | 40.0% | |
| GTGCATCAACTTCATCAAAC+TGG | + | chr8.4:78302702-78302721 | None:intergenic | 40.0% | |
| TATTGTGTGACAGTGAAGGA+TGG | - | chr8.4:78302752-78302771 | MS.gene45431:intron | 40.0% | |
| TCAGGATGTGGTAAATGAGT+AGG | - | chr8.4:78301421-78301440 | MS.gene45431:intron | 40.0% | |
| TCTACAATAGCACCAACCAA+AGG | + | chr8.4:78302485-78302504 | None:intergenic | 40.0% | |
| TTCATGCAGAATTCGAAGGA+GGG | - | chr8.4:78302815-78302834 | MS.gene45431:intron | 40.0% | |
| TTTACCCTAACATCAGGATG+TGG | - | chr8.4:78301409-78301428 | MS.gene45431:intron | 40.0% | |
| ! | AAGAGTTTTGCAGAAGCCTT+TGG | - | chr8.4:78302466-78302485 | MS.gene45431:intron | 40.0% |
| ! | ATGTCGACAATTGTGGATTG+AGG | + | chr8.4:78301591-78301610 | None:intergenic | 40.0% |
| ! | GAGATTCATTTTCCCTCTTG+TGG | - | chr8.4:78302614-78302633 | MS.gene45431:intron | 40.0% |
| ! | TCACTGTCCTAATGGTTTGT+TGG | - | chr8.4:78302186-78302205 | MS.gene45431:intron | 40.0% |
| ! | TGCTGACATTGGTTACGTAA+GGG | + | chr8.4:78300542-78300561 | None:intergenic | 40.0% |
| ! | TGGTCCCTTACCTCTATTTT+AGG | + | chr8.4:78300776-78300795 | None:intergenic | 40.0% |
| ! | TTGCTGACATTGGTTACGTA+AGG | + | chr8.4:78300543-78300562 | None:intergenic | 40.0% |
| !! | AATGGTTTGTTGGCTGGATT+TGG | - | chr8.4:78302196-78302215 | MS.gene45431:intron | 40.0% |
| !! | CAGTTGGTAGAATCATATCC+TGG | - | chr8.4:78302099-78302118 | MS.gene45431:intron | 40.0% |
| !! | CTTGTGGTTGTCTTTTTCAC+AGG | - | chr8.4:78302630-78302649 | MS.gene45431:intron | 40.0% |
| !! | GAGTAAGTGTGCTGTTTATC+AGG | + | chr8.4:78301652-78301671 | None:intergenic | 40.0% |
| ACAGTCTGATGTGGTTGAAG+TGG | - | chr8.4:78302660-78302679 | MS.gene45431:intron | 45.0% | |
| ACGCACATGGATGACTTATG+GGG | + | chr8.4:78300624-78300643 | None:intergenic | 45.0% | |
| AGAAAATATACCTGTCCCCC+AGG | + | chr8.4:78302518-78302537 | None:intergenic | 45.0% | |
| AGACGCACATGGATGACTTA+TGG | + | chr8.4:78300626-78300645 | None:intergenic | 45.0% | |
| CATCCAATATCCACCATGAG+TGG | + | chr8.4:78301157-78301176 | None:intergenic | 45.0% | |
| GACGCACATGGATGACTTAT+GGG | + | chr8.4:78300625-78300644 | None:intergenic | 45.0% | |
| GCAGTGGTAGGTTTCTTATG+TGG | - | chr8.4:78301707-78301726 | MS.gene45431:intron | 45.0% | |
| GGGATTGGAAATACGGCAAA+GGG | - | chr8.4:78301765-78301784 | MS.gene45431:intron | 45.0% | |
| GTGTTTAACAGAGACGCACA+TGG | + | chr8.4:78300637-78300656 | None:intergenic | 45.0% | |
| TAAGCAACCCTATGGGGATT+AGG | - | chr8.4:78302779-78302798 | MS.gene45431:intron | 45.0% | |
| TAATTTATCTCCTGGGGGAC+AGG | - | chr8.4:78302505-78302524 | MS.gene45431:intron | 45.0% | |
| TCTCAGTCCTAATCCCCATA+GGG | + | chr8.4:78302789-78302808 | None:intergenic | 45.0% | |
| TGGAAATACGGCAAAGGGTA+AGG | - | chr8.4:78301770-78301789 | MS.gene45431:intron | 45.0% | |
| TGGGATTGGAAATACGGCAA+AGG | - | chr8.4:78301764-78301783 | MS.gene45431:intron | 45.0% | |
| ! | ATGGGTAAAAGATCTGGCTC+TGG | - | chr8.4:78301931-78301950 | MS.gene45431:intron | 45.0% |
| ! | GCTTTTTGTGTCGTCTGATC+TGG | + | chr8.4:78302281-78302300 | None:intergenic | 45.0% |
| ! | GTTTTGCAGAAGCCTTTGGT+TGG | - | chr8.4:78302470-78302489 | MS.gene45431:intron | 45.0% |
| ! | TGGCTTGGATACCATCTATG+TGG | - | chr8.4:78301279-78301298 | MS.gene45431:intron | 45.0% |
| !! | ATTGGGTGTCACTGTCCTAA+TGG | - | chr8.4:78302178-78302197 | MS.gene45431:intron | 45.0% |
| !! | CTCATGGTGGATATTGGATG+TGG | - | chr8.4:78301157-78301176 | MS.gene45431:intron | 45.0% |
| !! | TGTCCTAATGGTTTGTTGGC+TGG | - | chr8.4:78302190-78302209 | MS.gene45431:intron | 45.0% |
| !!! | AAAAAAAAAGATATTTTTAT+AGG | - | chr8.4:78300412-78300431 | MS.gene45431:intron | 5.0% |
| CCAGCCCCCTACGTTTAAAA+AGG | + | chr8.4:78300746-78300765 | None:intergenic | 50.0% | |
| CGCACATGGATGACTTATGG+GGG | + | chr8.4:78300623-78300642 | None:intergenic | 50.0% | |
| CTCTCAGTCCTAATCCCCAT+AGG | + | chr8.4:78302790-78302809 | None:intergenic | 50.0% | |
| GAAACTAACTGCAAGGGTCC+AGG | + | chr8.4:78302120-78302139 | None:intergenic | 50.0% | |
| GACTGCAGGCGATCACTTAT+TGG | - | chr8.4:78302329-78302348 | MS.gene45431:intron | 50.0% | |
| GGTGAAGCGTGCTGAGTTAT+GGG | - | chr8.4:78301913-78301932 | MS.gene45431:intron | 50.0% | |
| GTGCGTCTCTGTTAAACACG+TGG | - | chr8.4:78300638-78300657 | MS.gene45431:CDS | 50.0% | |
| TGGTGAAGCGTGCTGAGTTA+TGG | - | chr8.4:78301912-78301931 | MS.gene45431:intron | 50.0% | |
| ! | CCTTTTTAAACGTAGGGGGC+TGG | - | chr8.4:78300743-78300762 | MS.gene45431:intron | 50.0% |
| ! | CTCTGTCTAGAATGTCCACG+TGG | - | chr8.4:78300595-78300614 | MS.gene45431:intron | 50.0% |
| !! | CTGCCACTCATGGTGGATAT+TGG | - | chr8.4:78301151-78301170 | MS.gene45431:intron | 50.0% |
| !! | GATTGGCATTGGCATTGGCT+TGG | - | chr8.4:78301264-78301283 | MS.gene45431:intron | 50.0% |
| ACCAGTACCAGACTGGAACC+AGG | - | chr8.4:78301111-78301130 | MS.gene45431:intron | 55.0% | |
| ACCTGGTTCCAGTCTGGTAC+TGG | + | chr8.4:78301115-78301134 | None:intergenic | 55.0% | |
| CACGCTTCACCATCTGCACA+TGG | + | chr8.4:78301904-78301923 | None:intergenic | 55.0% | |
| GCAAACACCTGGTTCCAGTC+TGG | + | chr8.4:78301121-78301140 | None:intergenic | 55.0% | |
| !! | TTCCAGTCTGGTACTGGTGC+AGG | + | chr8.4:78301109-78301128 | None:intergenic | 55.0% |
| AGACCCTGCTCTGCCACTCA+TGG | - | chr8.4:78301141-78301160 | MS.gene45431:intron | 60.0% | |
| CCACCATGAGTGGCAGAGCA+GGG | + | chr8.4:78301147-78301166 | None:intergenic | 60.0% | |
| CTCCTGCACCAGTACCAGAC+TGG | - | chr8.4:78301104-78301123 | MS.gene45431:intron | 60.0% | |
| CTGCGTGAGACTGTGACTGC+AGG | - | chr8.4:78302315-78302334 | MS.gene45431:intron | 60.0% | |
| CTGGACACTGCATCCGGTGA+GGG | + | chr8.4:78302415-78302434 | None:intergenic | 60.0% | |
| GAGCAGGGTCTGCAAACACC+TGG | + | chr8.4:78301132-78301151 | None:intergenic | 60.0% | |
| GAGGGTCTGGACACTGCATC+CGG | + | chr8.4:78302421-78302440 | None:intergenic | 60.0% | |
| TCCACCATGAGTGGCAGAGC+AGG | + | chr8.4:78301148-78301167 | None:intergenic | 60.0% | |
| TCTGGACACTGCATCCGGTG+AGG | + | chr8.4:78302416-78302435 | None:intergenic | 60.0% | |
| !! | TGACTTATGGGGGTGCCACG+TGG | + | chr8.4:78300613-78300632 | None:intergenic | 60.0% |
| CCCTGCTCTGCCACTCATGG+TGG | - | chr8.4:78301144-78301163 | MS.gene45431:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 78299892 | 78302876 | 78299892 | ID=MS.gene45431 |
| chr8.4 | mRNA | 78299892 | 78302876 | 78299892 | ID=MS.gene45431.t1;Parent=MS.gene45431 |
| chr8.4 | exon | 78302823 | 78302876 | 78302823 | ID=MS.gene45431.t1.exon1;Parent=MS.gene45431.t1 |
| chr8.4 | CDS | 78302823 | 78302876 | 78302823 | ID=cds.MS.gene45431.t1;Parent=MS.gene45431.t1 |
| chr8.4 | exon | 78301590 | 78301665 | 78301590 | ID=MS.gene45431.t1.exon2;Parent=MS.gene45431.t1 |
| chr8.4 | CDS | 78301590 | 78301665 | 78301590 | ID=cds.MS.gene45431.t1;Parent=MS.gene45431.t1 |
| chr8.4 | exon | 78300982 | 78301061 | 78300982 | ID=MS.gene45431.t1.exon3;Parent=MS.gene45431.t1 |
| chr8.4 | CDS | 78300982 | 78301061 | 78300982 | ID=cds.MS.gene45431.t1;Parent=MS.gene45431.t1 |
| chr8.4 | exon | 78300808 | 78300857 | 78300808 | ID=MS.gene45431.t1.exon4;Parent=MS.gene45431.t1 |
| chr8.4 | CDS | 78300808 | 78300857 | 78300808 | ID=cds.MS.gene45431.t1;Parent=MS.gene45431.t1 |
| chr8.4 | exon | 78300622 | 78300706 | 78300622 | ID=MS.gene45431.t1.exon5;Parent=MS.gene45431.t1 |
| chr8.4 | CDS | 78300622 | 78300706 | 78300622 | ID=cds.MS.gene45431.t1;Parent=MS.gene45431.t1 |
| chr8.4 | exon | 78300242 | 78300340 | 78300242 | ID=MS.gene45431.t1.exon6;Parent=MS.gene45431.t1 |
| chr8.4 | CDS | 78300242 | 78300340 | 78300242 | ID=cds.MS.gene45431.t1;Parent=MS.gene45431.t1 |
| chr8.4 | exon | 78299892 | 78300116 | 78299892 | ID=MS.gene45431.t1.exon7;Parent=MS.gene45431.t1 |
| chr8.4 | CDS | 78299892 | 78300116 | 78299892 | ID=cds.MS.gene45431.t1;Parent=MS.gene45431.t1 |
| Gene Sequence |
| Protein sequence |
