AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40929


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40929.t1 MTR_3g096860 91.456 316 18 4 1 314 1 309 0.0 552
MS.gene40929.t1 MTR_3g096860 88.194 288 25 4 1 286 1 281 8.41e-174 484
MS.gene40929.t1 MTR_8g094200 64.455 211 73 1 105 313 117 327 8.43e-97 289
MS.gene40929.t1 MTR_8g094200 59.659 176 69 1 105 278 117 292 1.27e-76 236
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40929.t1 AT4G33480 71.628 215 58 3 103 314 121 335 4.20e-107 315

Find 65 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAGATGCATTCGTAATT+TGG 0.146385 3.2:-80793009 None:intergenic
GAAGAAGGAGAATGCTTCTT+TGG 0.277770 3.2:-80791509 None:intergenic
AACAAGAGTAATGGTGAAAT+TGG 0.297804 3.2:+80791587 MS.gene40929:CDS
AAATTCAGTCTCTTCATCTA+TGG 0.303961 3.2:-80794753 None:intergenic
ACGAAACCAGCCGGTGGTTT+AGG 0.307214 3.2:-80791662 None:intergenic
AGAAGAATTGGAAATGGAAT+TGG 0.329446 3.2:-80791615 None:intergenic
AATTTGAGGCAGAGAAGAAT+TGG 0.329493 3.2:-80791627 None:intergenic
ATTGGAAGCGCTAGAGATAA+TGG 0.329827 3.2:-80791480 None:intergenic
CGAATGCATCTGATTTATAG+TGG 0.365590 3.2:+80793017 MS.gene40929:CDS
CAAGCTTCTTACTTCTTCAA+TGG 0.373400 3.2:+80791700 MS.gene40929:CDS
TCCTGCGAACAACCTTCCTT+TGG 0.378943 3.2:+80791998 MS.gene40929:CDS
AGGCAGAGAAGAATTGGAAA+TGG 0.386145 3.2:-80791621 None:intergenic
GTGCTCTGTAATATTTGTAT+AGG 0.414803 3.2:-80792334 None:intergenic
TTCCTTTGGAATGCGTGATA+AGG 0.446204 3.2:+80792012 MS.gene40929:CDS
TTGTTTCTGGTGGATGAAGA+AGG 0.472935 3.2:-80791524 None:intergenic
AGATGGTAAAGATGATGGCT+TGG 0.488428 3.2:+80793678 MS.gene40929:intron
TTGGAAGCGCTAGAGATAAT+GGG 0.489961 3.2:-80791479 None:intergenic
GACTGAATTTAATGCCTTGG+TGG 0.490843 3.2:+80794766 MS.gene40929:CDS
AGAAATCACACACTTCAATC+AGG 0.494930 3.2:+80793714 MS.gene40929:CDS
GCACTCCTTGACTCACTGTT+GGG 0.503400 3.2:+80794888 MS.gene40929:CDS
GACATCTTTGACTTTCATGC+AGG 0.506567 3.2:+80793179 MS.gene40929:CDS
GGTAGTGGCGTAGGAATTTG+AGG 0.510408 3.2:-80791641 None:intergenic
CGCACTCCTTGACTCACTGT+TGG 0.510918 3.2:+80794887 MS.gene40929:CDS
GGAAAGGAAAATTGAAGTCT+CGG 0.511604 3.2:-80791389 None:intergenic
AGAGACTGAATTTAATGCCT+TGG 0.522159 3.2:+80794763 MS.gene40929:CDS
GAAAGGAAAATTGAAGTCTC+GGG 0.522171 3.2:-80791388 None:intergenic
CCAGCCGGTGGTTTAGGTAG+TGG 0.522568 3.2:-80791656 None:intergenic
GCAAGTGCAAAAGAAGCAGC+AGG 0.531459 3.2:-80792987 None:intergenic
TTATCCTTGCAGGATCAGAA+TGG 0.536096 3.2:+80794542 MS.gene40929:intron
ATGCTTCTTTGGTTGAACAT+TGG 0.536426 3.2:-80791498 None:intergenic
AAATTGAAGTCTCGGGGAGG+AGG 0.544141 3.2:-80791381 None:intergenic
GGAGGAAGGATAAACATTCA+AGG 0.546652 3.2:-80791363 None:intergenic
AAGAATAACAACAAGAGTAA+TGG 0.549289 3.2:+80791578 MS.gene40929:CDS
TCCAAAGGAAGGTTGTTCGC+AGG 0.550682 3.2:-80791999 None:intergenic
CTCCTTATCACGCATTCCAA+AGG 0.556000 3.2:-80792014 None:intergenic
GAGATAATGGGTTGAAAGCG+AGG 0.561102 3.2:-80791467 None:intergenic
TGAAGTCTCGGGGAGGAGGA+AGG 0.572117 3.2:-80791377 None:intergenic
TTATGAACAGGAATTGCTTG+AGG 0.572765 3.2:+80794712 MS.gene40929:intron
CATTTAACTTACATGTCAAG+TGG 0.573255 3.2:-80792080 None:intergenic
GAATGCATCTGATTTATAGT+GGG 0.573548 3.2:+80793018 MS.gene40929:CDS
ATATTACAGAGCACAGGTGA+TGG 0.577846 3.2:+80792343 MS.gene40929:CDS
CCACTACCTAAACCACCGGC+TGG 0.578308 3.2:+80791656 MS.gene40929:CDS
TCTATGGCGCTAATGACAGC+AGG 0.580399 3.2:-80794737 None:intergenic
AGATAATGGGTTGAAAGCGA+GGG 0.583691 3.2:-80791466 None:intergenic
TTATCACGCATTCCAAAGGA+AGG 0.584077 3.2:-80792010 None:intergenic
TACAGAGCACAGGTGATGGA+TGG 0.592566 3.2:+80792347 MS.gene40929:CDS
ATTTAACTTACATGTCAAGT+GGG 0.593365 3.2:-80792079 None:intergenic
AGATGATGGCTTGGCAACTG+AGG 0.596641 3.2:+80793687 MS.gene40929:CDS
GGTTGATTGAGTGTTGAATG+AGG 0.602908 3.2:-80791410 None:intergenic
AACTAACAAGTGTGGCAAGT+CGG 0.615087 3.2:-80791724 None:intergenic
ATACAAATATTACAGAGCAC+AGG 0.618579 3.2:+80792337 MS.gene40929:CDS
ATTGAGTGTTGAATGAGGAA+AGG 0.624056 3.2:-80791405 None:intergenic
TCATCTACGACGAAACCAGC+CGG 0.625755 3.2:-80791671 None:intergenic
TACGCCACTACCTAAACCAC+CGG 0.633878 3.2:+80791652 MS.gene40929:CDS
GATGATGGCTTGGCAACTGA+GGG 0.636441 3.2:+80793688 MS.gene40929:CDS
AGAATATTCACAAGTTCTCG+AGG 0.645145 3.2:+80792035 MS.gene40929:CDS
GGTTTCGTCGTAGATGACAC+TGG 0.668620 3.2:+80791677 MS.gene40929:CDS
AAATTCAAAACTAACAAGTG+TGG 0.670625 3.2:-80791732 None:intergenic
AAAGGAAAATTGAAGTCTCG+GGG 0.671812 3.2:-80791387 None:intergenic
CAACAGTGAGTCAAGGAGTG+CGG 0.672482 3.2:-80794886 None:intergenic
AGTGAGAACGATGAGAAGCG+TGG 0.673004 3.2:-80791431 None:intergenic
GGTGGTTTAGGTAGTGGCGT+AGG 0.681302 3.2:-80791650 None:intergenic
GGAAAATTGAAGTCTCGGGG+AGG 0.715038 3.2:-80791384 None:intergenic
GATTAAATCACATACCACCA+AGG 0.720522 3.2:-80794780 None:intergenic
TCTACGACGAAACCAGCCGG+TGG 0.756646 3.2:-80791668 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAAAAAAAATATTTTACA+GGG + chr3.2:80793511-80793530 MS.gene40929:intron 10.0%
!!! TGTAAAATATTTTTTTTGTA+GGG - chr3.2:80793511-80793530 None:intergenic 10.0%
!!! TTTTTATGAATATTATTGTT+AGG + chr3.2:80791971-80791990 MS.gene40929:intron 10.0%
!! AAAACATATTAAATTAGATG+GGG - chr3.2:80794097-80794116 None:intergenic 15.0%
!! AGAAAACATATTAAATTAGA+TGG - chr3.2:80794099-80794118 None:intergenic 15.0%
!! GAAAACATATTAAATTAGAT+GGG - chr3.2:80794098-80794117 None:intergenic 15.0%
!! TATTTATTAACTTTAGATTG+TGG + chr3.2:80792296-80792315 MS.gene40929:intron 15.0%
!!! ACCTTTTAAGTTTTAAAAAT+AGG + chr3.2:80792443-80792462 MS.gene40929:intron 15.0%
!!! CTACAAAAAAAATATTTTAC+AGG + chr3.2:80793510-80793529 MS.gene40929:intron 15.0%
!!! CTGTAAAATATTTTTTTTGT+AGG - chr3.2:80793512-80793531 None:intergenic 15.0%
!!! TAATACTATTTGAAATAAAG+CGG + chr3.2:80794147-80794166 MS.gene40929:intron 15.0%
!!! TCCTATTTTTAAAACTTAAA+AGG - chr3.2:80792447-80792466 None:intergenic 15.0%
!!! TGTTTTTAATGTTTAATTCA+TGG + chr3.2:80792101-80792120 MS.gene40929:intron 15.0%
!!! TTCTAAAGTCTATAAAAATA+AGG + chr3.2:80792705-80792724 MS.gene40929:intron 15.0%
!!! TTTATATATCTAAGGTTTTA+GGG + chr3.2:80792140-80792159 MS.gene40929:intron 15.0%
!!! TTTATATATTCAAGGTTTTA+GGG + chr3.2:80792492-80792511 MS.gene40929:intron 15.0%
!! AAACATATTAAATTAGATGG+GGG - chr3.2:80794096-80794115 None:intergenic 20.0%
!! AAAGTCTATAAAAATAAGGA+TGG + chr3.2:80792709-80792728 MS.gene40929:intron 20.0%
!! AGTTCAAAATTTAATTCTGT+TGG - chr3.2:80793976-80793995 None:intergenic 20.0%
!! ATGTTATATTCAGATTATTG+TGG + chr3.2:80793271-80793290 MS.gene40929:intron 20.0%
!! CAAAAAATTGTATATTTACC+AGG + chr3.2:80793540-80793559 MS.gene40929:intron 20.0%
!! CAATATAATACTAAATTCAC+AGG - chr3.2:80794458-80794477 None:intergenic 20.0%
!! GATTACAGTTTATATATCTA+AGG + chr3.2:80792132-80792151 MS.gene40929:intron 20.0%
!! TATCATACTCGTTATAATTA+GGG + chr3.2:80793577-80793596 MS.gene40929:intron 20.0%
!! TTATCATACTCGTTATAATT+AGG + chr3.2:80793576-80793595 MS.gene40929:intron 20.0%
!!! ATTATGTATTTTTTCTGTTC+TGG + chr3.2:80791761-80791780 MS.gene40929:intron 20.0%
!!! GTTGAGATTCTATATTTTAT+GGG + chr3.2:80793329-80793348 MS.gene40929:intron 20.0%
!!! GTTTATATATCTAAGGTTTT+AGG + chr3.2:80792139-80792158 MS.gene40929:intron 20.0%
!!! GTTTATATATTCAAGGTTTT+AGG + chr3.2:80792491-80792510 MS.gene40929:intron 20.0%
!!! TCTTATCATTGTTGTTTTTT+GGG - chr3.2:80791553-80791572 None:intergenic 20.0%
!!! TGTTGAGATTCTATATTTTA+TGG + chr3.2:80793328-80793347 MS.gene40929:intron 20.0%
!!! TTATATATCTAAGGTTTTAG+GGG + chr3.2:80792141-80792160 MS.gene40929:intron 20.0%
!!! TTATATATTCAAGGTTTTAG+GGG + chr3.2:80792493-80792512 MS.gene40929:intron 20.0%
!!! TTCTTATCATTGTTGTTTTT+TGG - chr3.2:80791554-80791573 None:intergenic 20.0%
! AAAAAAGATTATCAAAACCC+TGG - chr3.2:80792270-80792289 None:intergenic 25.0%
! AAATTCAAAACTAACAAGTG+TGG - chr3.2:80791735-80791754 None:intergenic 25.0%
! AAGAATAACAACAAGAGTAA+TGG + chr3.2:80791578-80791597 MS.gene40929:CDS 25.0%
! ACAATCCACAGTTTATTTAT+TGG + chr3.2:80794483-80794502 MS.gene40929:intron 25.0%
! CATCTTTACCATCTAAAAAA+TGG - chr3.2:80793672-80793691 None:intergenic 25.0%
! GACAACCTAAATTAAAACTT+CGG + chr3.2:80792747-80792766 MS.gene40929:intron 25.0%
! GACAATTTCTTGTATGATTA+CGG + chr3.2:80792469-80792488 MS.gene40929:intron 25.0%
! GATTACGGTTTATATATTCA+AGG + chr3.2:80792484-80792503 MS.gene40929:intron 25.0%
! TCATTGCTGACAATTTAAAT+AGG + chr3.2:80792420-80792439 MS.gene40929:intron 25.0%
! TGCCAATTAGAAAAAAATGT+AGG - chr3.2:80794387-80794406 None:intergenic 25.0%
!! AAACATCAGCCATTAAATTT+TGG - chr3.2:80793648-80793667 None:intergenic 25.0%
!! AAATCAAATGCATTTTACAG+TGG + chr3.2:80794412-80794431 MS.gene40929:intron 25.0%
!! AACATCAGCCATTAAATTTT+GGG - chr3.2:80793647-80793666 None:intergenic 25.0%
!! AATAAATAAACTGTGGATTG+TGG - chr3.2:80794484-80794503 None:intergenic 25.0%
!! ACCAAAGAAAAATGTTACTT+TGG - chr3.2:80794808-80794827 None:intergenic 25.0%
!! ATTTAACTTACATGTCAAGT+GGG - chr3.2:80792082-80792101 None:intergenic 25.0%
!! CACTAAAGTCAAAATTGTTT+TGG - chr3.2:80792592-80792611 None:intergenic 25.0%
!! CTAAAAGCTTGAAATTTGTT+TGG + chr3.2:80793398-80793417 MS.gene40929:intron 25.0%
!! GCTAATTTCATTTTATGAAC+AGG + chr3.2:80794700-80794719 MS.gene40929:intron 25.0%
!! TAAAAATTAGCTTACTTCGT+TGG + chr3.2:80793889-80793908 MS.gene40929:intron 25.0%
!! TATAAAAGGAGTGTACAAAA+TGG - chr3.2:80792537-80792556 None:intergenic 25.0%
!! TCCAAAGTAACATTTTTCTT+TGG + chr3.2:80794804-80794823 MS.gene40929:intron 25.0%
!! TGTTTTCTTTCCATGTTTTT+AGG + chr3.2:80792935-80792954 MS.gene40929:intron 25.0%
!! TTTGGTAATTATGATTTGAC+AGG + chr3.2:80791895-80791914 MS.gene40929:intron 25.0%
!! TTTTTAGATGGTAAAGATGA+TGG + chr3.2:80793673-80793692 MS.gene40929:intron 25.0%
!!! AAAATAAGGATGGTTTTGTA+AGG + chr3.2:80792719-80792738 MS.gene40929:intron 25.0%
!!! AATACTGATTCATAGAAGAA+AGG - chr3.2:80793946-80793965 None:intergenic 25.0%
!!! ATTTGCCGAAGTTTTAATTT+AGG - chr3.2:80792755-80792774 None:intergenic 25.0%
!!! CTCCTACATTTTTTTCTAAT+TGG + chr3.2:80794382-80794401 MS.gene40929:intron 25.0%
!!! CTTTAGAACTTTATATGCAA+TGG - chr3.2:80792693-80792712 None:intergenic 25.0%
!!! GATAAATATGTTTTTAGTCC+TGG - chr3.2:80793561-80793580 None:intergenic 25.0%
!!! GATGTTTTCCATTTTTTAGA+TGG + chr3.2:80793661-80793680 MS.gene40929:intron 25.0%
AAAATGAAATTAGCGACACA+AGG - chr3.2:80794694-80794713 None:intergenic 30.0%
AAAGGAAAGCAAACATGATT+GGG - chr3.2:80793928-80793947 None:intergenic 30.0%
AAATGAAATTAGCGACACAA+GGG - chr3.2:80794693-80794712 None:intergenic 30.0%
AAATTCAGTCTCTTCATCTA+TGG - chr3.2:80794756-80794775 None:intergenic 30.0%
AACAAGAGTAATGGTGAAAT+TGG + chr3.2:80791587-80791606 MS.gene40929:CDS 30.0%
AATCAGATGCATTCGTAATT+TGG - chr3.2:80793012-80793031 None:intergenic 30.0%
ACAACGACTACAAAAACAAA+AGG - chr3.2:80792892-80792911 None:intergenic 30.0%
AGAACTTTATATGCAATGGT+TGG - chr3.2:80792689-80792708 None:intergenic 30.0%
AGAAGAATTGGAAATGGAAT+TGG - chr3.2:80791618-80791637 None:intergenic 30.0%
AGTATACCAATGCAAATTTG+AGG - chr3.2:80793852-80793871 None:intergenic 30.0%
ATACAAATATTACAGAGCAC+AGG + chr3.2:80792337-80792356 MS.gene40929:CDS 30.0%
ATTGGACACCCAAAATTTAA+TGG + chr3.2:80793636-80793655 MS.gene40929:intron 30.0%
CATGTCCAATAAATAAACTG+TGG - chr3.2:80794491-80794510 None:intergenic 30.0%
CGGTTTCTAAATCATATGTA+TGG + chr3.2:80792173-80792192 MS.gene40929:intron 30.0%
CTGATACTTCAACTACAAAA+TGG - chr3.2:80792387-80792406 None:intergenic 30.0%
GAATGCATCTGATTTATAGT+GGG + chr3.2:80793018-80793037 MS.gene40929:CDS 30.0%
GATCATAAATTTATCCTTGC+AGG + chr3.2:80794532-80794551 MS.gene40929:intron 30.0%
GTGCTCTGTAATATTTGTAT+AGG - chr3.2:80792337-80792356 None:intergenic 30.0%
TACACTGATCAGAAATACAT+GGG - chr3.2:80794645-80794664 None:intergenic 30.0%
TATGAATCGAATTATGCAAG+TGG + chr3.2:80791824-80791843 MS.gene40929:intron 30.0%
TCTAACAAACTTGAATATGG+AGG - chr3.2:80794266-80794285 None:intergenic 30.0%
TGACGATTTCTGTTATGTTA+AGG + chr3.2:80791865-80791884 MS.gene40929:intron 30.0%
TGCTCTAACAAACTTGAATA+TGG - chr3.2:80794269-80794288 None:intergenic 30.0%
TGCTTCATAACCATTTGAAT+TGG + chr3.2:80793618-80793637 MS.gene40929:intron 30.0%
TTACACTGATCAGAAATACA+TGG - chr3.2:80794646-80794665 None:intergenic 30.0%
TTATGTTAAGGCACAATCTT+TGG + chr3.2:80791877-80791896 MS.gene40929:intron 30.0%
TTGACAGGAATATTATTGCA+GGG + chr3.2:80791910-80791929 MS.gene40929:intron 30.0%
TTGTACAGCTGTACTATAAA+AGG - chr3.2:80792551-80792570 None:intergenic 30.0%
TTTGACAGGAATATTATTGC+AGG + chr3.2:80791909-80791928 MS.gene40929:intron 30.0%
! ACTATTTGAAATAAAGCGGA+TGG + chr3.2:80794151-80794170 MS.gene40929:intron 30.0%
! ACTTATTGGAATTTTGTTGC+AGG + chr3.2:80794176-80794195 MS.gene40929:intron 30.0%
! AGATTTTATAGCTCACAACA+TGG + chr3.2:80793295-80793314 MS.gene40929:intron 30.0%
! ATGTATTTCTGATCAGTGTA+AGG + chr3.2:80794645-80794664 MS.gene40929:intron 30.0%
! CAAATGCATTTTATAGTGAC+CGG + chr3.2:80794348-80794367 MS.gene40929:intron 30.0%
! CATTTAACTTACATGTCAAG+TGG - chr3.2:80792083-80792102 None:intergenic 30.0%
! GATTGTGGAATTTTTACTAC+AGG + chr3.2:80792311-80792330 MS.gene40929:intron 30.0%
! TGTATTTCTGATCAGTGTAA+GGG + chr3.2:80794646-80794665 MS.gene40929:intron 30.0%
!!! GTTTTTTGGGTTTTTGTTTC+TGG - chr3.2:80791540-80791559 None:intergenic 30.0%
AAAGGAAAATTGAAGTCTCG+GGG - chr3.2:80791390-80791409 None:intergenic 35.0%
AACACTACGCTAAAAATCCA+GGG + chr3.2:80792250-80792269 MS.gene40929:intron 35.0%
AAGCGAGGTGAATAAATAGA+AGG - chr3.2:80793447-80793466 None:intergenic 35.0%
AGAAATCACACACTTCAATC+AGG + chr3.2:80793714-80793733 MS.gene40929:CDS 35.0%
AGAATATTCACAAGTTCTCG+AGG + chr3.2:80792035-80792054 MS.gene40929:CDS 35.0%
AGAGACTGAATTTAATGCCT+TGG + chr3.2:80794763-80794782 MS.gene40929:CDS 35.0%
AGCGAGGTGAATAAATAGAA+GGG - chr3.2:80793446-80793465 None:intergenic 35.0%
ATGCTTCTTTGGTTGAACAT+TGG - chr3.2:80791501-80791520 None:intergenic 35.0%
CAAGCTTCTTACTTCTTCAA+TGG + chr3.2:80791700-80791719 MS.gene40929:CDS 35.0%
CATCAGAGAGATTTCACATT+GGG - chr3.2:80792209-80792228 None:intergenic 35.0%
CATGAGAAAAGACTGACATA+TGG - chr3.2:80793048-80793067 None:intergenic 35.0%
CGAATGCATCTGATTTATAG+TGG + chr3.2:80793017-80793036 MS.gene40929:CDS 35.0%
CGGTCACTATAAAATGCATT+TGG - chr3.2:80794350-80794369 None:intergenic 35.0%
CTACATCCTCAAATTTGCAT+TGG + chr3.2:80793843-80793862 MS.gene40929:intron 35.0%
GAAAGGAAAATTGAAGTCTC+GGG - chr3.2:80791391-80791410 None:intergenic 35.0%
GAAAGGAAAGCAAACATGAT+TGG - chr3.2:80793929-80793948 None:intergenic 35.0%
GAGAAAATGTCACAGGTAAA+TGG - chr3.2:80794323-80794342 None:intergenic 35.0%
GATTAAATCACATACCACCA+AGG - chr3.2:80794783-80794802 None:intergenic 35.0%
GATTACCTAATTGAACTGTG+AGG - chr3.2:80793785-80793804 None:intergenic 35.0%
GGAAAACATACAGAAATGAG+TGG - chr3.2:80794845-80794864 None:intergenic 35.0%
GGAAAGGAAAATTGAAGTCT+CGG - chr3.2:80791392-80791411 None:intergenic 35.0%
GTGAAATCTCTCTGATGATT+TGG + chr3.2:80792212-80792231 MS.gene40929:intron 35.0%
TAAAGCGGATGGTAACTTAT+TGG + chr3.2:80794162-80794181 MS.gene40929:intron 35.0%
TCATCAGAGAGATTTCACAT+TGG - chr3.2:80792210-80792229 None:intergenic 35.0%
TCGTAACTGACCTAAAAACA+TGG - chr3.2:80792948-80792967 None:intergenic 35.0%
TCTATTTATTCACCTCGCTT+TGG + chr3.2:80793447-80793466 MS.gene40929:intron 35.0%
TTATGAACAGGAATTGCTTG+AGG + chr3.2:80794712-80794731 MS.gene40929:intron 35.0%
TTCGGCAAATCTTCATGAAA+TGG + chr3.2:80792765-80792784 MS.gene40929:intron 35.0%
! AAAGGATTTTCCCATTAGCT+AGG - chr3.2:80792874-80792893 None:intergenic 35.0%
! AAATCGCTGATGATGTAAGT+AGG + chr3.2:80794573-80794592 MS.gene40929:intron 35.0%
! AATTAGCTTACTTCGTTGGA+TGG + chr3.2:80793893-80793912 MS.gene40929:intron 35.0%
! AATTTGAGGCAGAGAAGAAT+TGG - chr3.2:80791630-80791649 None:intergenic 35.0%
! ATTTTCCCATTAGCTAGGTT+TGG - chr3.2:80792869-80792888 None:intergenic 35.0%
! TTTTCCCATTAGCTAGGTTT+GGG - chr3.2:80792868-80792887 None:intergenic 35.0%
!! ATTGAGTGTTGAATGAGGAA+AGG - chr3.2:80791408-80791427 None:intergenic 35.0%
!! TGTAGGAGTACTTCAATTTC+CGG - chr3.2:80794370-80794389 None:intergenic 35.0%
!! TTTTGGGTGTCCAATTCAAA+TGG - chr3.2:80793631-80793650 None:intergenic 35.0%
!!! ATGTTTTTAGGTCAGTTACG+AGG + chr3.2:80792947-80792966 MS.gene40929:intron 35.0%
!!! CATCTTTTTTGTTTGTCCTC+TGG - chr3.2:80793254-80793273 None:intergenic 35.0%
!!! TGGATTTTTAGCGTAGTGTT+GGG - chr3.2:80792250-80792269 None:intergenic 35.0%
!!! TTTTGGGTTTTTGTTTCTGG+TGG - chr3.2:80791537-80791556 None:intergenic 35.0%
AACTAACAAGTGTGGCAAGT+CGG - chr3.2:80791727-80791746 None:intergenic 40.0%
AAGCATGGCATAGACATAGT+AGG - chr3.2:80792661-80792680 None:intergenic 40.0%
ACAAAAAGCAGTGGATCAGA+TGG - chr3.2:80794228-80794247 None:intergenic 40.0%
AGCATGGCATAGACATAGTA+GGG - chr3.2:80792660-80792679 None:intergenic 40.0%
AGGCAGAGAAGAATTGGAAA+TGG - chr3.2:80791624-80791643 None:intergenic 40.0%
ATATTACAGAGCACAGGTGA+TGG + chr3.2:80792343-80792362 MS.gene40929:CDS 40.0%
ATGTACCCAAACCTAGCTAA+TGG + chr3.2:80792860-80792879 MS.gene40929:intron 40.0%
CAACACTACGCTAAAAATCC+AGG + chr3.2:80792249-80792268 MS.gene40929:intron 40.0%
CTATTGCCTCTGTTAAACAG+TGG + chr3.2:80794290-80794309 MS.gene40929:intron 40.0%
GAAGAAGGAGAATGCTTCTT+TGG - chr3.2:80791512-80791531 None:intergenic 40.0%
GACTGAATTTAATGCCTTGG+TGG + chr3.2:80794766-80794785 MS.gene40929:CDS 40.0%
GGAGGAAGGATAAACATTCA+AGG - chr3.2:80791366-80791385 None:intergenic 40.0%
GGTGAATAAATAGAAGGGAC+AGG - chr3.2:80793441-80793460 None:intergenic 40.0%
GTTCTAACTTCTAACACCAG+AGG + chr3.2:80793235-80793254 MS.gene40929:intron 40.0%
TGGTAGAGAGAAAATGTCAC+AGG - chr3.2:80794330-80794349 None:intergenic 40.0%
TGTACCCAAACCTAGCTAAT+GGG + chr3.2:80792861-80792880 MS.gene40929:intron 40.0%
TTATCACGCATTCCAAAGGA+AGG - chr3.2:80792013-80792032 None:intergenic 40.0%
TTATCCTTGCAGGATCAGAA+TGG + chr3.2:80794542-80794561 MS.gene40929:intron 40.0%
! AGATGGTAAAGATGATGGCT+TGG + chr3.2:80793678-80793697 MS.gene40929:intron 40.0%
! GACATCTTTGACTTTCATGC+AGG + chr3.2:80793179-80793198 MS.gene40929:CDS 40.0%
! GTATGTTTTCCCTTACACAC+AGG + chr3.2:80794854-80794873 MS.gene40929:intron 40.0%
! TTTTACCCAACAGTGAGTCA+AGG - chr3.2:80794896-80794915 None:intergenic 40.0%
!! AGATAATGGGTTGAAAGCGA+GGG - chr3.2:80791469-80791488 None:intergenic 40.0%
!! ATTGGAAGCGCTAGAGATAA+TGG - chr3.2:80791483-80791502 None:intergenic 40.0%
!! GGTTGATTGAGTGTTGAATG+AGG - chr3.2:80791413-80791432 None:intergenic 40.0%
!! TATGATCAGCTCTAGAACAC+TGG - chr3.2:80794519-80794538 None:intergenic 40.0%
!! TTCCTTTGGAATGCGTGATA+AGG + chr3.2:80792012-80792031 MS.gene40929:CDS 40.0%
!! TTGGAAGCGCTAGAGATAAT+GGG - chr3.2:80791482-80791501 None:intergenic 40.0%
!! TTGTTTCTGGTGGATGAAGA+AGG - chr3.2:80791527-80791546 None:intergenic 40.0%
!!! CTGGATTTTTAGCGTAGTGT+TGG - chr3.2:80792251-80792270 None:intergenic 40.0%
CATTCCATTCTGATCCTGCA+AGG - chr3.2:80794549-80794568 None:intergenic 45.0%
CGCATCCTCACAGTTCAATT+AGG + chr3.2:80793777-80793796 MS.gene40929:intron 45.0%
CTCCTTATCACGCATTCCAA+AGG - chr3.2:80792017-80792036 None:intergenic 45.0%
CTTCTTCCTCCTGTGTGTAA+GGG - chr3.2:80794866-80794885 None:intergenic 45.0%
GAAATACATGGGAGCTGAGA+AGG - chr3.2:80794634-80794653 None:intergenic 45.0%
GGGAGCTGAGAAGGAAATAA+TGG - chr3.2:80794625-80794644 None:intergenic 45.0%
GTGATGCCACTGTTTAACAG+AGG - chr3.2:80794299-80794318 None:intergenic 45.0%
TCGAATTATGCAAGTGGCTG+TGG + chr3.2:80791830-80791849 MS.gene40929:intron 45.0%
TTAGATGGGGGAAAATGCAC+AGG - chr3.2:80794084-80794103 None:intergenic 45.0%
TTTGCAGCGACAAAAAGCAG+TGG - chr3.2:80794237-80794256 None:intergenic 45.0%
! AGATACTGTTTTACCGCTCG+TGG + chr3.2:80793134-80793153 MS.gene40929:intron 45.0%
! TGTTTTCCCTTACACACAGG+AGG + chr3.2:80794857-80794876 MS.gene40929:intron 45.0%
!! GAGATAATGGGTTGAAAGCG+AGG - chr3.2:80791470-80791489 None:intergenic 45.0%
!!! ACTGCTTTTTGTCGCTGCAA+AGG + chr3.2:80794236-80794255 MS.gene40929:CDS 45.0%
!!! AGGTTTTAGGGGTGAAAGAG+TGG + chr3.2:80792504-80792523 MS.gene40929:intron 45.0%
AAATTGAAGTCTCGGGGAGG+AGG - chr3.2:80791384-80791403 None:intergenic 50.0%
AGTGAGAACGATGAGAAGCG+TGG - chr3.2:80791434-80791453 None:intergenic 50.0%
ATCGCCATCAGAGAGTTCAG+AGG - chr3.2:80793484-80793503 None:intergenic 50.0%
CAACAGTGAGTCAAGGAGTG+CGG - chr3.2:80794889-80794908 None:intergenic 50.0%
GCAAGTGCAAAAGAAGCAGC+AGG - chr3.2:80792990-80793009 None:intergenic 50.0%
GCACTCCTTGACTCACTGTT+GGG + chr3.2:80794888-80794907 MS.gene40929:CDS 50.0%
GCCAGACTCTGTAATGAGTG+GGG - chr3.2:80794603-80794622 None:intergenic 50.0%
GCTTCTTCCTCCTGTGTGTA+AGG - chr3.2:80794867-80794886 None:intergenic 50.0%
GGAAAATTGAAGTCTCGGGG+AGG - chr3.2:80791387-80791406 None:intergenic 50.0%
GGCCAGACTCTGTAATGAGT+GGG - chr3.2:80794604-80794623 None:intergenic 50.0%
GGTTTCGTCGTAGATGACAC+TGG + chr3.2:80791677-80791696 MS.gene40929:CDS 50.0%
GTAACAAAAACCGCCACGAG+CGG - chr3.2:80793150-80793169 None:intergenic 50.0%
TACGCCACTACCTAAACCAC+CGG + chr3.2:80791652-80791671 MS.gene40929:CDS 50.0%
TCATCTACGACGAAACCAGC+CGG - chr3.2:80791674-80791693 None:intergenic 50.0%
TCCAAAGGAAGGTTGTTCGC+AGG - chr3.2:80792002-80792021 None:intergenic 50.0%
TCCCCACTCATTACAGAGTC+TGG + chr3.2:80794599-80794618 MS.gene40929:intron 50.0%
TCCTGCGAACAACCTTCCTT+TGG + chr3.2:80791998-80792017 MS.gene40929:CDS 50.0%
TCTATGGCGCTAATGACAGC+AGG - chr3.2:80794740-80794759 None:intergenic 50.0%
TGGCCAGACTCTGTAATGAG+TGG - chr3.2:80794605-80794624 None:intergenic 50.0%
! AGATGATGGCTTGGCAACTG+AGG + chr3.2:80793687-80793706 MS.gene40929:CDS 50.0%
! CAATGGTTGGCTGTGAAGCA+TGG - chr3.2:80792676-80792695 None:intergenic 50.0%
! GATGATGGCTTGGCAACTGA+GGG + chr3.2:80793688-80793707 MS.gene40929:CDS 50.0%
! GGTAGTGGCGTAGGAATTTG+AGG - chr3.2:80791644-80791663 None:intergenic 50.0%
! TACTGTTTTACCGCTCGTGG+CGG + chr3.2:80793137-80793156 MS.gene40929:CDS 50.0%
!! TACAGAGCACAGGTGATGGA+TGG + chr3.2:80792347-80792366 MS.gene40929:CDS 50.0%
!!! GGTTTTAGGGGTGAAAGACG+CGG + chr3.2:80792153-80792172 MS.gene40929:intron 50.0%
ACGAAACCAGCCGGTGGTTT+AGG - chr3.2:80791665-80791684 None:intergenic 55.0%
CGCACTCCTTGACTCACTGT+TGG + chr3.2:80794887-80794906 MS.gene40929:CDS 55.0%
GCCACCTCTGAACTCTCTGA+TGG + chr3.2:80793477-80793496 MS.gene40929:intron 55.0%
GCCATCAGAGAGTTCAGAGG+TGG - chr3.2:80793481-80793500 None:intergenic 55.0%
GTGGCTTCGAAACCAAAGCG+AGG - chr3.2:80793462-80793481 None:intergenic 55.0%
! AGAAGGGACAGGCTCTGACT+AGG - chr3.2:80793430-80793449 None:intergenic 55.0%
! GGTGGTTTAGGTAGTGGCGT+AGG - chr3.2:80791653-80791672 None:intergenic 55.0%
CCACTACCTAAACCACCGGC+TGG + chr3.2:80791656-80791675 MS.gene40929:CDS 60.0%
CCAGCCGGTGGTTTAGGTAG+TGG - chr3.2:80791659-80791678 None:intergenic 60.0%
TCTACGACGAAACCAGCCGG+TGG - chr3.2:80791671-80791690 None:intergenic 60.0%
TGAAGTCTCGGGGAGGAGGA+AGG - chr3.2:80791380-80791399 None:intergenic 60.0%
! GCGTAGTGTTGGGTCACGAG+AGG - chr3.2:80792240-80792259 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 80791344 80794920 80791344 ID=MS.gene40929
chr3.2 mRNA 80791344 80794920 80791344 ID=MS.gene40929.t1;Parent=MS.gene40929
chr3.2 exon 80791344 80791739 80791344 ID=MS.gene40929.t1.exon1;Parent=MS.gene40929.t1
chr3.2 CDS 80791344 80791739 80791344 ID=cds.MS.gene40929.t1;Parent=MS.gene40929.t1
chr3.2 exon 80791993 80792090 80791993 ID=MS.gene40929.t1.exon2;Parent=MS.gene40929.t1
chr3.2 CDS 80791993 80792090 80791993 ID=cds.MS.gene40929.t1;Parent=MS.gene40929.t1
chr3.2 exon 80792333 80792375 80792333 ID=MS.gene40929.t1.exon3;Parent=MS.gene40929.t1
chr3.2 CDS 80792333 80792375 80792333 ID=cds.MS.gene40929.t1;Parent=MS.gene40929.t1
chr3.2 exon 80792957 80793039 80792957 ID=MS.gene40929.t1.exon4;Parent=MS.gene40929.t1
chr3.2 CDS 80792957 80793039 80792957 ID=cds.MS.gene40929.t1;Parent=MS.gene40929.t1
chr3.2 exon 80793136 80793200 80793136 ID=MS.gene40929.t1.exon5;Parent=MS.gene40929.t1
chr3.2 CDS 80793136 80793200 80793136 ID=cds.MS.gene40929.t1;Parent=MS.gene40929.t1
chr3.2 exon 80793680 80793735 80793680 ID=MS.gene40929.t1.exon6;Parent=MS.gene40929.t1
chr3.2 CDS 80793680 80793735 80793680 ID=cds.MS.gene40929.t1;Parent=MS.gene40929.t1
chr3.2 exon 80794198 80794257 80794198 ID=MS.gene40929.t1.exon7;Parent=MS.gene40929.t1
chr3.2 CDS 80794198 80794257 80794198 ID=cds.MS.gene40929.t1;Parent=MS.gene40929.t1
chr3.2 exon 80794554 80794586 80794554 ID=MS.gene40929.t1.exon8;Parent=MS.gene40929.t1
chr3.2 CDS 80794554 80794586 80794554 ID=cds.MS.gene40929.t1;Parent=MS.gene40929.t1
chr3.2 exon 80794722 80794787 80794722 ID=MS.gene40929.t1.exon9;Parent=MS.gene40929.t1
chr3.2 CDS 80794722 80794787 80794722 ID=cds.MS.gene40929.t1;Parent=MS.gene40929.t1
chr3.2 exon 80794876 80794920 80794876 ID=MS.gene40929.t1.exon10;Parent=MS.gene40929.t1
chr3.2 CDS 80794876 80794920 80794876 ID=cds.MS.gene40929.t1;Parent=MS.gene40929.t1
Gene Sequence

>MS.gene40929

ATGGCGGCACAGTTACAAACCTTGAATGTTTATCCTTCCTCCTCCCCGAGACTTCAATTTTCCTTTCCTCATTCAACACTCAATCAACCACGCTTCTCATCGTTCTCACTTCGAATTCGAAACCCTCGCTTTCAACCCATTATCTCTAGCGCTTCCAATGTTCAACCAAAGAAGCATTCTCCTTCTTCATCCACCAGAAACAAAAACCCAAAAAACAACAATGATAAGAAGAAGAAGAATAACAACAAGAGTAATGGTGAAATTGGTGATTCCAATTCCATTTCCAATTCTTCTCTGCCTCAAATTCCTACGCCACTACCTAAACCACCGGCTGGTTTCGTCGTAGATGACACTGGCAAGCTTCTTACTTCTTCAATGGACCGACTTGCCACACTTGTTAGTTTTGAATTTCTTGTTATTATGTATTTTTTCTGTTCTGGTAGATTCAATCATGTTTCTGTGTGTGTTTGAAGTAGTAATTATGAATCGAATTATGCAAGTGGCTGTGGTTAGTTAGTTATTGACGATTTCTGTTATGTTAAGGCACAATCTTTGGTAATTATGATTTGACAGGAATATTATTGCAGGGAATTAGAGTTCAAGAGTTTTATTTAGAATTGTTGTTAATTTTTATGAATATTATTGTTAGGTTGATCCTGCGAACAACCTTCCTTTGGAATGCGTGATAAGGAGAATATTCACAAGTTCTCGAGGAGATGATTGTATGTTGCTATGCCCACTTGACATGTAAGTTAAATGTTTTTAATGTTTAATTCATGGTCTTGTATGATTACAGTTTATATATCTAAGGTTTTAGGGGTGAAAGACGCGGTTTCTAAATCATATGTATGGTTGTTTTTAGCCCAATGTGAAATCTCTCTGATGATTTGGCTCCTCTCGTGACCCAACACTACGCTAAAAATCCAGGGTTTTGATAATCTTTTTTTTTTAGTATTTATTAACTTTAGATTGTGGAATTTTTACTACAGGCCTATACAAATATTACAGAGCACAGGTGATGGATGGTCAGAAGTAAGTTTCCATTTTGTAGTTGAAGTATCAGTTTGCTTGCATTTTCATTGCTGACAATTTAAATAGGACCTTTTAAGTTTTAAAAATAGGACAGACAATTTCTTGTATGATTACGGTTTATATATTCAAGGTTTTAGGGGTGAAAGAGTGGTTTCATACCATTTTGTACACTCCTTTTATAGTACAGCTGTACAAGTCACTCTTGTTAAAGCTCCAAAACAATTTTGACTTTAGTGATGAATGAAACTCATTGCTTTTATGTGAAAAATAAGAAGACTTTTCCCTACTATGTCTATGCCATGCTTCACAGCCAACCATTGCATATAAAGTTCTAAAGTCTATAAAAATAAGGATGGTTTTGTAAGGCAATCGACAACCTAAATTAAAACTTCGGCAAATCTTCATGAAATGGTCGAATGATTTGATTAAGTTAAAATCTTATATTTTGACAAAAGAGAATGACATCTTTTGATTAGACACATCTATGTACCCAAACCTAGCTAATGGGAAAATCCTTTTGTTTTTGTAGTCGTTGTTGTCAAATCTTCATTCAGATTCATGTTTTCTTTCCATGTTTTTAGGTCAGTTACGAGGAGCTTGAGTCTCTTCTGCCTGCTGCTTCTTTTGCACTTGCCAAATTACGAATGCATCTGATTTATAGTGGGTATGCCATATGTCAGTCTTTTCTCATGACAAAGAAAGTTATAAAATTAACTATTGTGCTTGATCACTAAATATTTCTCTCTCTCTCTCGTATTAGATACTGTTTTACCGCTCGTGGCGGTTTTTGTTACTCAGAAGAAGACATCTTTGACTTTCATGCAGGCAAGTTCTTTGCTCTTTCTTTTCATTAAACTATGTTCTAACTTCTAACACCAGAGGACAAACAAAAAAGATGTTATATTCAGATTATTGTGGAAGATTTTATAGCTCACAACATGGCTGTTAATACTGTTGAGATTCTATATTTTATGGGTGCTAATTACATCATGCTTTTGACATTATATCTGATCACTTGATCACTAAAAGCTTGAAATTTGTTTGGATACATCCTAGTCAGAGCCTGTCCCTTCTATTTATTCACCTCGCTTTGGTTTCGAAGCCACCTCTGAACTCTCTGATGGCGATATAGCCCTACAAAAAAAATATTTTACAGGGTAAAAGCAAAAAATTGTATATTTACCAGGACTAAAAACATATTTATCATACTCGTTATAATTAGGGAATTCTAAAGTGATAATATGCTTCATAACCATTTGAATTGGACACCCAAAATTTAATGGCTGATGTTTTCCATTTTTTAGATGGTAAAGATGATGGCTTGGCAACTGAGGGTGTAGAAATCACACACTTCAATCAGGTAATCTCAACTTCAATTGCATAAACTGATAAACATGTTATCGCATCCTCACAGTTCAATTAGGTAATCTGTAAAATTAAAATTCGATTTATTATCAAATATTTATACTACATCCTCAAATTTGCATTGGTATACTTGACAACTGTACGAGAATAAAAATTAGCTTACTTCGTTGGATGGTTGCGTGTTCCCAATCATGTTTGCTTTCCTTTCTTCTATGAATCAGTATTGTTTATACCAACAGAATTAAATTTTGAACTGAAAAAGTTGTTCTGAGCTTTTATTTTATCGTGTATCTAACTATCTACAGTCATGAAGAGTCGTACTTTTTGTTAAGACAAATTTCCTGTGCATTTTCCCCCATCTAATTTAATATGTTTTCTAAAGTAACATCTAACATGTTACTAATGCTAATACTATTTGAAATAAAGCGGATGGTAACTTATTGGAATTTTGTTGCAGGAAGCAGCGCACTACATGATATATACACCATCTGATCCACTGCTTTTTGTCGCTGCAAAGGTAATCCTCCATATTCAAGTTTGTTAGAGCAACTATTGCCTCTGTTAAACAGTGGCATCACTCCATTTACCTGTGACATTTTCTCTCTACCAAATGCATTTTATAGTGACCGGAAATTGAAGTACTCCTACATTTTTTTCTAATTGGCATGAGAAAATCAAATGCATTTTACAGTGGAGTGAAAACTGTTCAGAATACCTGTGAATTTAGTATTATATTGTTTCCACAATCCACAGTTTATTTATTGGACATGAGAAACCAGTGTTCTAGAGCTGATCATAAATTTATCCTTGCAGGATCAGAATGGAATGCTACAAATCGCTGATGATGTAAGTAGGCACTCCCCACTCATTACAGAGTCTGGCCATTATTTCCTTCTCAGCTCCCATGTATTTCTGATCAGTGTAAGGGTACAAATTCTAATTTGATAATCCCTTGTGTCGCTAATTTCATTTTATGAACAGGAATTGCTTGAGGATCCTGCTGTCATTAGCGCCATAGATGAAGAGACTGAATTTAATGCCTTGGTGGTATGTGATTTAATCTTCCAAAGTAACATTTTTCTTTGGTTATAATGTTTGACTCCACTCATTTCTGTATGTTTTCCCTTACACACAGGAGGAAGAAGCCGCACTCCTTGACTCACTGTTGGGTAAAAGATAA

Protein sequence

>MS.gene40929.t1

MAAQLQTLNVYPSSSPRLQFSFPHSTLNQPRFSSFSLRIRNPRFQPIISSASNVQPKKHSPSSSTRNKNPKNNNDKKKKNNNKSNGEIGDSNSISNSSLPQIPTPLPKPPAGFVVDDTGKLLTSSMDRLATLVDPANNLPLECVIRRIFTSSRGDDCMLLCPLDMPIQILQSTGDGWSEVSYEELESLLPAASFALAKLRMHLIYSGYCFTARGGFCYSEEDIFDFHADGKDDGLATEGVEITHFNQEAAHYMIYTPSDPLLFVAAKDQNGMLQIADDELLEDPAVISAIDEETEFNALVEEEAALLDSLLGKR