AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06355


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06355.t1 MTR_3g096860 91.772 316 17 4 1 314 1 309 0.0 552
MS.gene06355.t1 MTR_3g096860 88.542 288 24 4 1 286 1 281 7.22e-174 484
MS.gene06355.t1 MTR_8g094200 64.455 211 73 1 105 313 117 327 7.48e-97 289
MS.gene06355.t1 MTR_8g094200 59.659 176 69 1 105 278 117 292 1.14e-76 236
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06355.t1 AT4G33480 71.628 215 58 3 103 314 121 335 4.48e-107 315

Find 65 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAGATGCATTCGTAATT+TGG 0.146385 3.1:+77259859 None:intergenic
GAAGAAGGAGAATGCTTCTT+TGG 0.277770 3.1:+77261360 None:intergenic
AACAAGAGTAATGGTGAAAT+TGG 0.297804 3.1:-77261282 MS.gene06355:CDS
AAATTCAGTCTCTTCATCTA+TGG 0.303961 3.1:+77258119 None:intergenic
ACGAAACCAGCCGGTGGTTT+AGG 0.307214 3.1:+77261207 None:intergenic
AGAAGAATTGGAAATGGAAT+TGG 0.329446 3.1:+77261254 None:intergenic
AATTTGAGGCAGAGAAGAAT+TGG 0.329493 3.1:+77261242 None:intergenic
ATTGGAAGCGCTAGAGATAA+TGG 0.329827 3.1:+77261389 None:intergenic
CGAATGCATCTGATTTATAG+TGG 0.365590 3.1:-77259851 MS.gene06355:CDS
CAAGCTTCTTACTTCTTCAA+TGG 0.373400 3.1:-77261169 MS.gene06355:CDS
TCCTGCGAACAACCTTCCTT+TGG 0.378943 3.1:-77260871 MS.gene06355:CDS
AGGCAGAGAAGAATTGGAAA+TGG 0.386145 3.1:+77261248 None:intergenic
GTGCTCTGTAATATTTGTAT+AGG 0.414803 3.1:+77260535 None:intergenic
TTCCTTTGGAATGCGTGATA+AGG 0.446204 3.1:-77260857 MS.gene06355:CDS
TTGTTTCTGGTGGATGAAGA+AGG 0.472935 3.1:+77261345 None:intergenic
AGATGGTAAAGATGATGGCT+TGG 0.488428 3.1:-77259194 MS.gene06355:CDS
TTGGAAGCGCTAGAGATAAT+GGG 0.489961 3.1:+77261390 None:intergenic
GACTGAATTTAATGCCTTGG+TGG 0.490843 3.1:-77258106 MS.gene06355:intron
AGAAATCACACACTTCAATC+AGG 0.494930 3.1:-77259158 MS.gene06355:intron
GCACTCCTTGACTCACTGTT+GGG 0.503400 3.1:-77257984 MS.gene06355:CDS
GACATCTTTGACTTTCATGC+AGG 0.506567 3.1:-77259693 MS.gene06355:intron
GGTAGTGGCGTAGGAATTTG+AGG 0.510408 3.1:+77261228 None:intergenic
CGCACTCCTTGACTCACTGT+TGG 0.510918 3.1:-77257985 MS.gene06355:CDS
GGAAAGGAAAATTGAAGTCT+CGG 0.511604 3.1:+77261480 None:intergenic
AGAGACTGAATTTAATGCCT+TGG 0.522159 3.1:-77258109 MS.gene06355:CDS
GAAAGGAAAATTGAAGTCTC+GGG 0.522171 3.1:+77261481 None:intergenic
CCAGCCGGTGGTTTAGGTAG+TGG 0.522568 3.1:+77261213 None:intergenic
GCAAGTGCAAAAGAAGCAGC+AGG 0.531459 3.1:+77259881 None:intergenic
TTATCCTTGCAGGATCAGAA+TGG 0.536096 3.1:-77258330 MS.gene06355:intron
ATGCTTCTTTGGTTGAACAT+TGG 0.536426 3.1:+77261371 None:intergenic
AAATTGAAGTCTCGGGGAGG+AGG 0.544141 3.1:+77261488 None:intergenic
GGAGGAAGGATAAACATTCA+AGG 0.546652 3.1:+77261506 None:intergenic
TCCAAAGGAAGGTTGTTCGC+AGG 0.550682 3.1:+77260870 None:intergenic
CTCCTTATCACGCATTCCAA+AGG 0.556000 3.1:+77260855 None:intergenic
GAGATAATGGGTTGAAAGCG+AGG 0.561102 3.1:+77261402 None:intergenic
AAGAAGAACAACAAGAGTAA+TGG 0.564283 3.1:-77261291 MS.gene06355:CDS
TGAAGTCTCGGGGAGGAGGA+AGG 0.572117 3.1:+77261492 None:intergenic
TTATGAACAGGAATTGCTTG+AGG 0.572765 3.1:-77258160 MS.gene06355:intron
CATTTAACTTACATGTCAAG+TGG 0.573255 3.1:+77260789 None:intergenic
GAATGCATCTGATTTATAGT+GGG 0.573548 3.1:-77259850 MS.gene06355:intron
ATATTACAGAGCACAGGTGA+TGG 0.577846 3.1:-77260526 MS.gene06355:CDS
CCACTACCTAAACCACCGGC+TGG 0.578308 3.1:-77261213 MS.gene06355:CDS
TCTATGGCGCTAATGACAGC+AGG 0.580399 3.1:+77258135 None:intergenic
AGATAATGGGTTGAAAGCGA+GGG 0.583691 3.1:+77261403 None:intergenic
TTATCACGCATTCCAAAGGA+AGG 0.584077 3.1:+77260859 None:intergenic
TACAGAGCACAGGTGATGGA+TGG 0.592566 3.1:-77260522 MS.gene06355:CDS
ATTTAACTTACATGTCAAGT+GGG 0.593365 3.1:+77260790 None:intergenic
AGATGATGGCTTGGCAACTG+AGG 0.596641 3.1:-77259185 MS.gene06355:CDS
GGTTGATTGAGTGTTGAATG+AGG 0.602908 3.1:+77261459 None:intergenic
AACTAACAAGTGTGGCAAGT+CGG 0.615087 3.1:+77261145 None:intergenic
ATACAAATATTACAGAGCAC+AGG 0.618579 3.1:-77260532 MS.gene06355:CDS
ATTGAGTGTTGAATGAGGAA+AGG 0.624056 3.1:+77261464 None:intergenic
TCATCTACGACGAAACCAGC+CGG 0.625755 3.1:+77261198 None:intergenic
TACGCCACTACCTAAACCAC+CGG 0.633878 3.1:-77261217 MS.gene06355:CDS
GATGATGGCTTGGCAACTGA+GGG 0.636441 3.1:-77259184 MS.gene06355:CDS
AGAATATTCACAAGTTCTCG+AGG 0.645145 3.1:-77260834 MS.gene06355:CDS
GGTTTCGTCGTAGATGACAC+TGG 0.668620 3.1:-77261192 MS.gene06355:CDS
AAATTCAAAACTAACAAGTG+TGG 0.670625 3.1:+77261137 None:intergenic
AAAGGAAAATTGAAGTCTCG+GGG 0.671812 3.1:+77261482 None:intergenic
CAACAGTGAGTCAAGGAGTG+CGG 0.672482 3.1:+77257986 None:intergenic
AGTGAGAACGATGAGAAGCG+TGG 0.673004 3.1:+77261438 None:intergenic
GGTGGTTTAGGTAGTGGCGT+AGG 0.681302 3.1:+77261219 None:intergenic
GGAAAATTGAAGTCTCGGGG+AGG 0.715038 3.1:+77261485 None:intergenic
GATTAAATCACATACCACCA+AGG 0.720522 3.1:+77258092 None:intergenic
TCTACGACGAAACCAGCCGG+TGG 0.756646 3.1:+77261201 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAAAAAAAATATTTTACA+GGG - chr3.1:77260138-77260157 MS.gene06355:intron 10.0%
!!! TGTAAAATATTTTTTTTGTA+GGG + chr3.1:77260138-77260157 None:intergenic 10.0%
!!! TTTTTATGAATATTATTGTT+AGG - chr3.1:77258601-77258620 MS.gene06355:intron 10.0%
!! AAAACATATTAAATTAGATG+GGG + chr3.1:77260724-77260743 None:intergenic 15.0%
!! AGAAAACATATTAAATTAGA+TGG + chr3.1:77260726-77260745 None:intergenic 15.0%
!! GAAAACATATTAAATTAGAT+GGG + chr3.1:77260725-77260744 None:intergenic 15.0%
!! TATTTATTAACTTTAGATTG+TGG - chr3.1:77258926-77258945 MS.gene06355:intron 15.0%
!!! ACCTTTTAAGTTTTAAAAAT+AGG - chr3.1:77259073-77259092 MS.gene06355:intron 15.0%
!!! CTACAAAAAAAATATTTTAC+AGG - chr3.1:77260137-77260156 MS.gene06355:intron 15.0%
!!! CTGTAAAATATTTTTTTTGT+AGG + chr3.1:77260139-77260158 None:intergenic 15.0%
!!! TAATACTATTTGAAATAAAG+CGG - chr3.1:77260774-77260793 MS.gene06355:intron 15.0%
!!! TCCTATTTTTAAAACTTAAA+AGG + chr3.1:77259077-77259096 None:intergenic 15.0%
!!! TGTTTTTAATGTTTAATTCA+TGG - chr3.1:77258731-77258750 MS.gene06355:intron 15.0%
!!! TTCTAAAGTCTATAAAAATA+AGG - chr3.1:77259336-77259355 MS.gene06355:intron 15.0%
!!! TTTATATATCTAAGGTTTTA+GGG - chr3.1:77258770-77258789 MS.gene06355:intron 15.0%
!!! TTTATATATTCAAGGTTTTA+GGG - chr3.1:77259122-77259141 MS.gene06355:intron 15.0%
!! AAACATATTAAATTAGATGG+GGG + chr3.1:77260723-77260742 None:intergenic 20.0%
!! AAAGTCTATAAAAATAAGGA+TGG - chr3.1:77259340-77259359 MS.gene06355:intron 20.0%
!! AGTTCAAAATTTAATTCTGT+TGG + chr3.1:77260603-77260622 None:intergenic 20.0%
!! ATGTTATATTCAGATTATTG+TGG - chr3.1:77259898-77259917 MS.gene06355:CDS 20.0%
!! CAAAAAATTGTATATTTACC+AGG - chr3.1:77260167-77260186 MS.gene06355:intron 20.0%
!! CAATATAATACTAAATTCAC+AGG + chr3.1:77261085-77261104 None:intergenic 20.0%
!! GATTACAGTTTATATATCTA+AGG - chr3.1:77258762-77258781 MS.gene06355:intron 20.0%
!! TATCATACTCGTTATAATTA+GGG - chr3.1:77260204-77260223 MS.gene06355:intron 20.0%
!! TTATCATACTCGTTATAATT+AGG - chr3.1:77260203-77260222 MS.gene06355:intron 20.0%
!!! ATTATGTATTTTTTCTGTTC+TGG - chr3.1:77258391-77258410 MS.gene06355:intron 20.0%
!!! GTTGAGATTCTATATTTTAT+GGG - chr3.1:77259956-77259975 MS.gene06355:intron 20.0%
!!! GTTTATATATCTAAGGTTTT+AGG - chr3.1:77258769-77258788 MS.gene06355:intron 20.0%
!!! GTTTATATATTCAAGGTTTT+AGG - chr3.1:77259121-77259140 MS.gene06355:intron 20.0%
!!! TCTTATCATTGTTGTTTTTT+GGG + chr3.1:77258183-77258202 None:intergenic 20.0%
!!! TGTTGAGATTCTATATTTTA+TGG - chr3.1:77259955-77259974 MS.gene06355:intron 20.0%
!!! TTATATATCTAAGGTTTTAG+GGG - chr3.1:77258771-77258790 MS.gene06355:intron 20.0%
!!! TTATATATTCAAGGTTTTAG+GGG - chr3.1:77259123-77259142 MS.gene06355:intron 20.0%
!!! TTCTTATCATTGTTGTTTTT+TGG + chr3.1:77258184-77258203 None:intergenic 20.0%
! AAAAAAGATTATCAAAACCC+TGG + chr3.1:77258900-77258919 None:intergenic 25.0%
! AAATGAAAGCAAACATGATT+GGG + chr3.1:77260555-77260574 None:intergenic 25.0%
! AAATTCAAAACTAACAAGTG+TGG + chr3.1:77258365-77258384 None:intergenic 25.0%
! ACAATCCACAGTTTATTTAT+TGG - chr3.1:77261110-77261129 MS.gene06355:intron 25.0%
! CATCTTTACCATCTAAAAAA+TGG + chr3.1:77260299-77260318 None:intergenic 25.0%
! GACAACCTAAATTAAAACTT+CGG - chr3.1:77259378-77259397 MS.gene06355:intron 25.0%
! GACAATTTCTTGTATGATTA+CGG - chr3.1:77259099-77259118 MS.gene06355:intron 25.0%
! GATTACGGTTTATATATTCA+AGG - chr3.1:77259114-77259133 MS.gene06355:intron 25.0%
! TAAACGACTACAAAAACAAA+AGG + chr3.1:77259523-77259542 None:intergenic 25.0%
! TCATTGCTGACAATTTAAAT+AGG - chr3.1:77259050-77259069 MS.gene06355:intron 25.0%
! TGCCAATTAGAAAAAAATGT+AGG + chr3.1:77261014-77261033 None:intergenic 25.0%
!! AAACATCAGCCATTAAATTT+TGG + chr3.1:77260275-77260294 None:intergenic 25.0%
!! AAATCAAATGCATTTTACAG+TGG - chr3.1:77261039-77261058 MS.gene06355:intron 25.0%
!! AACATCAGCCATTAAATTTT+GGG + chr3.1:77260274-77260293 None:intergenic 25.0%
!! AATAAATAAACTGTGGATTG+TGG + chr3.1:77261111-77261130 None:intergenic 25.0%
!! ACCAAAGAAAAATGTTACTT+TGG + chr3.1:77261435-77261454 None:intergenic 25.0%
!! ATTTAACTTACATGTCAAGT+GGG + chr3.1:77258712-77258731 None:intergenic 25.0%
!! CACTAAAGTCAAAATTGTTT+TGG + chr3.1:77259223-77259242 None:intergenic 25.0%
!! CTAAAAGCTTGAAATTTGTT+TGG - chr3.1:77260025-77260044 MS.gene06355:intron 25.0%
!! GCTAATTTCATTTTATGAAC+AGG - chr3.1:77261327-77261346 MS.gene06355:CDS 25.0%
!! TAAAAATTAGCTTACTTCGT+TGG - chr3.1:77260516-77260535 MS.gene06355:CDS 25.0%
!! TATAAAAGGAGTGTACAAAA+TGG + chr3.1:77259168-77259187 None:intergenic 25.0%
!! TCCAAAGTAACATTTTTCTT+TGG - chr3.1:77261431-77261450 MS.gene06355:CDS 25.0%
!! TGTTTTCTTTCCATGTTTTT+AGG - chr3.1:77259566-77259585 MS.gene06355:intron 25.0%
!! TTTGGTAATTATGATTTGAC+AGG - chr3.1:77258525-77258544 MS.gene06355:intron 25.0%
!! TTTTTAGATGGTAAAGATGA+TGG - chr3.1:77260300-77260319 MS.gene06355:intron 25.0%
!!! AAAATAAGGATGGTTTTGTA+AGG - chr3.1:77259350-77259369 MS.gene06355:intron 25.0%
!!! ATTTGCCGAAGTTTTAATTT+AGG + chr3.1:77259386-77259405 None:intergenic 25.0%
!!! CTCCTACATTTTTTTCTAAT+TGG - chr3.1:77261009-77261028 MS.gene06355:intron 25.0%
!!! CTTTAGAACTTTATATGCAA+TGG + chr3.1:77259324-77259343 None:intergenic 25.0%
!!! GATAAATATGTTTTTAGTCC+TGG + chr3.1:77260188-77260207 None:intergenic 25.0%
!!! GATGTTTTCCATTTTTTAGA+TGG - chr3.1:77260288-77260307 MS.gene06355:intron 25.0%
AAAATGAAATTAGCGACACA+AGG + chr3.1:77261321-77261340 None:intergenic 30.0%
AAATGAAATTAGCGACACAA+GGG + chr3.1:77261320-77261339 None:intergenic 30.0%
AAATTCAGTCTCTTCATCTA+TGG + chr3.1:77261383-77261402 None:intergenic 30.0%
AACAAGAGTAATGGTGAAAT+TGG - chr3.1:77258217-77258236 MS.gene06355:intron 30.0%
AAGAAGAACAACAAGAGTAA+TGG - chr3.1:77258208-77258227 MS.gene06355:intron 30.0%
AATCAGATGCATTCGTAATT+TGG + chr3.1:77259643-77259662 None:intergenic 30.0%
AGAACTTTATATGCAATGGT+TGG + chr3.1:77259320-77259339 None:intergenic 30.0%
AGAAGAATTGGAAATGGAAT+TGG + chr3.1:77258248-77258267 None:intergenic 30.0%
AGTATACCAATGCAAATTTG+AGG + chr3.1:77260479-77260498 None:intergenic 30.0%
ATACAAATATTACAGAGCAC+AGG - chr3.1:77258967-77258986 MS.gene06355:intron 30.0%
ATTGGACACCCAAAATTTAA+TGG - chr3.1:77260263-77260282 MS.gene06355:intron 30.0%
CATGTCCAATAAATAAACTG+TGG + chr3.1:77261118-77261137 None:intergenic 30.0%
CGGTTTCTAAATCATATGTA+TGG - chr3.1:77258803-77258822 MS.gene06355:intron 30.0%
CTGATACTTCAACTACAAAA+TGG + chr3.1:77259017-77259036 None:intergenic 30.0%
GAAATGAAAGCAAACATGAT+TGG + chr3.1:77260556-77260575 None:intergenic 30.0%
GAATGCATCTGATTTATAGT+GGG - chr3.1:77259649-77259668 MS.gene06355:intron 30.0%
GATCATAAATTTATCCTTGC+AGG - chr3.1:77261159-77261178 MS.gene06355:CDS 30.0%
GTGCTCTGTAATATTTGTAT+AGG + chr3.1:77258967-77258986 None:intergenic 30.0%
TACACTGATCAGAAATACAT+GGG + chr3.1:77261272-77261291 None:intergenic 30.0%
TATGAATCGAATTATGCAAG+TGG - chr3.1:77258454-77258473 MS.gene06355:intron 30.0%
TCTAACAAACTTGAATATGG+AGG + chr3.1:77260893-77260912 None:intergenic 30.0%
TGACGATTTCTGTTATGTTA+AGG - chr3.1:77258495-77258514 MS.gene06355:intron 30.0%
TGCTCTAACAAACTTGAATA+TGG + chr3.1:77260896-77260915 None:intergenic 30.0%
TGCTTCATAACCATTTGAAT+TGG - chr3.1:77260245-77260264 MS.gene06355:intron 30.0%
TTACACTGATCAGAAATACA+TGG + chr3.1:77261273-77261292 None:intergenic 30.0%
TTATGTTAAGGCACAATCTT+TGG - chr3.1:77258507-77258526 MS.gene06355:intron 30.0%
TTGACAGGAATATTATTGCA+GGG - chr3.1:77258540-77258559 MS.gene06355:intron 30.0%
TTGTACAGCTGTACTATAAA+AGG + chr3.1:77259182-77259201 None:intergenic 30.0%
TTTGACAGGAATATTATTGC+AGG - chr3.1:77258539-77258558 MS.gene06355:intron 30.0%
! ACTATTTGAAATAAAGCGGA+TGG - chr3.1:77260778-77260797 MS.gene06355:intron 30.0%
! ACTTATTGGAATTTTGTTGC+AGG - chr3.1:77260803-77260822 MS.gene06355:CDS 30.0%
! AGATTTTATAGCTCACAACA+TGG - chr3.1:77259922-77259941 MS.gene06355:intron 30.0%
! ATGTATTTCTGATCAGTGTA+AGG - chr3.1:77261272-77261291 MS.gene06355:CDS 30.0%
! CAAATGCATTTTATAGTGAC+CGG - chr3.1:77260975-77260994 MS.gene06355:intron 30.0%
! CATTTAACTTACATGTCAAG+TGG + chr3.1:77258713-77258732 None:intergenic 30.0%
! GATTGTGGAATTTTTACTAC+AGG - chr3.1:77258941-77258960 MS.gene06355:intron 30.0%
! TGTATTTCTGATCAGTGTAA+GGG - chr3.1:77261273-77261292 MS.gene06355:CDS 30.0%
!!! GTTTTTTGGGTTTTTGTTTC+TGG + chr3.1:77258170-77258189 None:intergenic 30.0%
AAAGGAAAATTGAAGTCTCG+GGG + chr3.1:77258020-77258039 None:intergenic 35.0%
AACACTACGCTAAAAATCCA+GGG - chr3.1:77258880-77258899 MS.gene06355:intron 35.0%
AAGCGAGGTGAATAAATAGA+AGG + chr3.1:77260074-77260093 None:intergenic 35.0%
AGAAATCACACACTTCAATC+AGG - chr3.1:77260341-77260360 MS.gene06355:intron 35.0%
AGAATATTCACAAGTTCTCG+AGG - chr3.1:77258665-77258684 MS.gene06355:CDS 35.0%
AGAGACTGAATTTAATGCCT+TGG - chr3.1:77261390-77261409 MS.gene06355:CDS 35.0%
AGCGAGGTGAATAAATAGAA+GGG + chr3.1:77260073-77260092 None:intergenic 35.0%
ATGCTTCTTTGGTTGAACAT+TGG + chr3.1:77258131-77258150 None:intergenic 35.0%
CAAGCTTCTTACTTCTTCAA+TGG - chr3.1:77258330-77258349 MS.gene06355:intron 35.0%
CATCAGAGAGATTTCACATT+GGG + chr3.1:77258839-77258858 None:intergenic 35.0%
CATGAGAAAAGACTGACATA+TGG + chr3.1:77259679-77259698 None:intergenic 35.0%
CGAATGCATCTGATTTATAG+TGG - chr3.1:77259648-77259667 MS.gene06355:intron 35.0%
CGGTCACTATAAAATGCATT+TGG + chr3.1:77260977-77260996 None:intergenic 35.0%
CTACATCCTCAAATTTGCAT+TGG - chr3.1:77260470-77260489 MS.gene06355:intron 35.0%
GAAAGGAAAATTGAAGTCTC+GGG + chr3.1:77258021-77258040 None:intergenic 35.0%
GAGAAAATGTCACAGGTAAA+TGG + chr3.1:77260950-77260969 None:intergenic 35.0%
GATTAAATCACATACCACCA+AGG + chr3.1:77261410-77261429 None:intergenic 35.0%
GATTACCTAATTGAACTGTG+AGG + chr3.1:77260412-77260431 None:intergenic 35.0%
GGAAAACATACAGAAATGAG+TGG + chr3.1:77261472-77261491 None:intergenic 35.0%
GGAAAGGAAAATTGAAGTCT+CGG + chr3.1:77258022-77258041 None:intergenic 35.0%
GTGAAATCTCTCTGATGATT+TGG - chr3.1:77258842-77258861 MS.gene06355:intron 35.0%
TAAAGCGGATGGTAACTTAT+TGG - chr3.1:77260789-77260808 MS.gene06355:intron 35.0%
TCATCAGAGAGATTTCACAT+TGG + chr3.1:77258840-77258859 None:intergenic 35.0%
TCGTAACTGACCTAAAAACA+TGG + chr3.1:77259579-77259598 None:intergenic 35.0%
TCTATTTATTCACCTCGCTT+TGG - chr3.1:77260074-77260093 MS.gene06355:intron 35.0%
TTATGAACAGGAATTGCTTG+AGG - chr3.1:77261339-77261358 MS.gene06355:CDS 35.0%
TTCGGCAAATCTTCATGAAA+TGG - chr3.1:77259396-77259415 MS.gene06355:intron 35.0%
! AAAGGATTTTCCCATTAGCT+AGG + chr3.1:77259505-77259524 None:intergenic 35.0%
! AAATCGCTGATGATGTAAGT+AGG - chr3.1:77261200-77261219 MS.gene06355:CDS 35.0%
! AATTAGCTTACTTCGTTGGA+TGG - chr3.1:77260520-77260539 MS.gene06355:CDS 35.0%
! AATTTGAGGCAGAGAAGAAT+TGG + chr3.1:77258260-77258279 None:intergenic 35.0%
! ATTTTCCCATTAGCTAGGTT+TGG + chr3.1:77259500-77259519 None:intergenic 35.0%
! TTTTCCCATTAGCTAGGTTT+GGG + chr3.1:77259499-77259518 None:intergenic 35.0%
!! ATTGAGTGTTGAATGAGGAA+AGG + chr3.1:77258038-77258057 None:intergenic 35.0%
!! TGTAGGAGTACTTCAATTTC+CGG + chr3.1:77260997-77261016 None:intergenic 35.0%
!! TTTTGGGTGTCCAATTCAAA+TGG + chr3.1:77260258-77260277 None:intergenic 35.0%
!!! ATGTTTTTAGGTCAGTTACG+AGG - chr3.1:77259578-77259597 MS.gene06355:intron 35.0%
!!! CATCTTTTTTGTTTGTCCTC+TGG + chr3.1:77259881-77259900 None:intergenic 35.0%
!!! TGGATTTTTAGCGTAGTGTT+GGG + chr3.1:77258880-77258899 None:intergenic 35.0%
!!! TTTTGGGTTTTTGTTTCTGG+TGG + chr3.1:77258167-77258186 None:intergenic 35.0%
AACTAACAAGTGTGGCAAGT+CGG + chr3.1:77258357-77258376 None:intergenic 40.0%
AAGCATGGCATAGACATAGT+AGG + chr3.1:77259292-77259311 None:intergenic 40.0%
ACAAAAAGCAGTGGATCAGA+TGG + chr3.1:77260855-77260874 None:intergenic 40.0%
AGCATGGCATAGACATAGTA+GGG + chr3.1:77259291-77259310 None:intergenic 40.0%
AGGCAGAGAAGAATTGGAAA+TGG + chr3.1:77258254-77258273 None:intergenic 40.0%
ATATTACAGAGCACAGGTGA+TGG - chr3.1:77258973-77258992 MS.gene06355:intron 40.0%
ATGTACCCAAACCTAGCTAA+TGG - chr3.1:77259491-77259510 MS.gene06355:intron 40.0%
CAACACTACGCTAAAAATCC+AGG - chr3.1:77258879-77258898 MS.gene06355:intron 40.0%
CTATTGCCTCTGTTAAACAG+TGG - chr3.1:77260917-77260936 MS.gene06355:intron 40.0%
GAAGAAGGAGAATGCTTCTT+TGG + chr3.1:77258142-77258161 None:intergenic 40.0%
GACTGAATTTAATGCCTTGG+TGG - chr3.1:77261393-77261412 MS.gene06355:CDS 40.0%
GGAGGAAGGATAAACATTCA+AGG + chr3.1:77257996-77258015 None:intergenic 40.0%
GGTGAATAAATAGAAGGGAC+AGG + chr3.1:77260068-77260087 None:intergenic 40.0%
GTTCTAACTTCTAACACCAG+AGG - chr3.1:77259862-77259881 MS.gene06355:CDS 40.0%
TGGTAGAGAGAAAATGTCAC+AGG + chr3.1:77260957-77260976 None:intergenic 40.0%
TGTACCCAAACCTAGCTAAT+GGG - chr3.1:77259492-77259511 MS.gene06355:intron 40.0%
TTATCACGCATTCCAAAGGA+AGG + chr3.1:77258643-77258662 None:intergenic 40.0%
TTATCCTTGCAGGATCAGAA+TGG - chr3.1:77261169-77261188 MS.gene06355:CDS 40.0%
! AGATGGTAAAGATGATGGCT+TGG - chr3.1:77260305-77260324 MS.gene06355:intron 40.0%
! GACATCTTTGACTTTCATGC+AGG - chr3.1:77259806-77259825 MS.gene06355:intron 40.0%
! GTATGTTTTCCCTTACACAC+AGG - chr3.1:77261481-77261500 MS.gene06355:CDS 40.0%
! TTTTACCCAACAGTGAGTCA+AGG + chr3.1:77261523-77261542 None:intergenic 40.0%
!! AGATAATGGGTTGAAAGCGA+GGG + chr3.1:77258099-77258118 None:intergenic 40.0%
!! ATTGGAAGCGCTAGAGATAA+TGG + chr3.1:77258113-77258132 None:intergenic 40.0%
!! GGTTGATTGAGTGTTGAATG+AGG + chr3.1:77258043-77258062 None:intergenic 40.0%
!! TATGATCAGCTCTAGAACAC+TGG + chr3.1:77261146-77261165 None:intergenic 40.0%
!! TTCCTTTGGAATGCGTGATA+AGG - chr3.1:77258642-77258661 MS.gene06355:CDS 40.0%
!! TTGGAAGCGCTAGAGATAAT+GGG + chr3.1:77258112-77258131 None:intergenic 40.0%
!! TTGTTTCTGGTGGATGAAGA+AGG + chr3.1:77258157-77258176 None:intergenic 40.0%
!!! CTGGATTTTTAGCGTAGTGT+TGG + chr3.1:77258881-77258900 None:intergenic 40.0%
CATTCCATTCTGATCCTGCA+AGG + chr3.1:77261176-77261195 None:intergenic 45.0%
CGCATCCTCACAGTTCAATT+AGG - chr3.1:77260404-77260423 MS.gene06355:intron 45.0%
CTCCTTATCACGCATTCCAA+AGG + chr3.1:77258647-77258666 None:intergenic 45.0%
CTTCTTCCTCCTGTGTGTAA+GGG + chr3.1:77261493-77261512 None:intergenic 45.0%
GAAATACATGGGAGCTGAGA+AGG + chr3.1:77261261-77261280 None:intergenic 45.0%
GGGAGCTGAGAAGGAAATAA+TGG + chr3.1:77261252-77261271 None:intergenic 45.0%
GTGATGCCACTGTTTAACAG+AGG + chr3.1:77260926-77260945 None:intergenic 45.0%
TCGAATTATGCAAGTGGCTG+TGG - chr3.1:77258460-77258479 MS.gene06355:intron 45.0%
TTAGATGGGGGAAAATGCAC+AGG + chr3.1:77260711-77260730 None:intergenic 45.0%
TTTGCAGCGACAAAAAGCAG+TGG + chr3.1:77260864-77260883 None:intergenic 45.0%
! AGATACTGTTTTACCGCTCG+TGG - chr3.1:77259761-77259780 MS.gene06355:intron 45.0%
! TGTTTTCCCTTACACACAGG+AGG - chr3.1:77261484-77261503 MS.gene06355:CDS 45.0%
!! GAGATAATGGGTTGAAAGCG+AGG + chr3.1:77258100-77258119 None:intergenic 45.0%
!!! ACTGCTTTTTGTCGCTGCAA+AGG - chr3.1:77260863-77260882 MS.gene06355:CDS 45.0%
!!! GGTTTTAGGGGTGAAAGAAG+TGG - chr3.1:77259135-77259154 MS.gene06355:intron 45.0%
AAATTGAAGTCTCGGGGAGG+AGG + chr3.1:77258014-77258033 None:intergenic 50.0%
AGTGAGAACGATGAGAAGCG+TGG + chr3.1:77258064-77258083 None:intergenic 50.0%
ATCGCCATCAGAGAGTTCAG+AGG + chr3.1:77260111-77260130 None:intergenic 50.0%
CAACAGTGAGTCAAGGAGTG+CGG + chr3.1:77261516-77261535 None:intergenic 50.0%
GCAAGTGCAAAAGAAGCAGC+AGG + chr3.1:77259621-77259640 None:intergenic 50.0%
GCACTCCTTGACTCACTGTT+GGG - chr3.1:77261515-77261534 MS.gene06355:CDS 50.0%
GCCAGACTCTGTAATGAGTG+GGG + chr3.1:77261230-77261249 None:intergenic 50.0%
GCTTCTTCCTCCTGTGTGTA+AGG + chr3.1:77261494-77261513 None:intergenic 50.0%
GGAAAATTGAAGTCTCGGGG+AGG + chr3.1:77258017-77258036 None:intergenic 50.0%
GGCCAGACTCTGTAATGAGT+GGG + chr3.1:77261231-77261250 None:intergenic 50.0%
GGTTTCGTCGTAGATGACAC+TGG - chr3.1:77258307-77258326 MS.gene06355:intron 50.0%
GTAACAAAAACCGCCACGAG+CGG + chr3.1:77259777-77259796 None:intergenic 50.0%
TACGCCACTACCTAAACCAC+CGG - chr3.1:77258282-77258301 MS.gene06355:intron 50.0%
TCATCTACGACGAAACCAGC+CGG + chr3.1:77258304-77258323 None:intergenic 50.0%
TCCAAAGGAAGGTTGTTCGC+AGG + chr3.1:77258632-77258651 None:intergenic 50.0%
TCCCCACTCATTACAGAGTC+TGG - chr3.1:77261226-77261245 MS.gene06355:CDS 50.0%
TCCTGCGAACAACCTTCCTT+TGG - chr3.1:77258628-77258647 MS.gene06355:intron 50.0%
TCTATGGCGCTAATGACAGC+AGG + chr3.1:77261367-77261386 None:intergenic 50.0%
TGGCCAGACTCTGTAATGAG+TGG + chr3.1:77261232-77261251 None:intergenic 50.0%
! AGATGATGGCTTGGCAACTG+AGG - chr3.1:77260314-77260333 MS.gene06355:intron 50.0%
! CAATGGTTGGCTGTGAAGCA+TGG + chr3.1:77259307-77259326 None:intergenic 50.0%
! GATGATGGCTTGGCAACTGA+GGG - chr3.1:77260315-77260334 MS.gene06355:intron 50.0%
! GGTAGTGGCGTAGGAATTTG+AGG + chr3.1:77258274-77258293 None:intergenic 50.0%
! TACTGTTTTACCGCTCGTGG+CGG - chr3.1:77259764-77259783 MS.gene06355:intron 50.0%
!! TACAGAGCACAGGTGATGGA+TGG - chr3.1:77258977-77258996 MS.gene06355:intron 50.0%
!!! GGTTTTAGGGGTGAAAGACG+CGG - chr3.1:77258783-77258802 MS.gene06355:intron 50.0%
ACGAAACCAGCCGGTGGTTT+AGG + chr3.1:77258295-77258314 None:intergenic 55.0%
CGCACTCCTTGACTCACTGT+TGG - chr3.1:77261514-77261533 MS.gene06355:CDS 55.0%
GCCACCTCTGAACTCTCTGA+TGG - chr3.1:77260104-77260123 MS.gene06355:intron 55.0%
GCCATCAGAGAGTTCAGAGG+TGG + chr3.1:77260108-77260127 None:intergenic 55.0%
GTGGCTTCGAAACCAAAGCG+AGG + chr3.1:77260089-77260108 None:intergenic 55.0%
! AGAAGGGACAGGCTCTGACT+AGG + chr3.1:77260057-77260076 None:intergenic 55.0%
! GGTGGTTTAGGTAGTGGCGT+AGG + chr3.1:77258283-77258302 None:intergenic 55.0%
CCACTACCTAAACCACCGGC+TGG - chr3.1:77258286-77258305 MS.gene06355:intron 60.0%
CCAGCCGGTGGTTTAGGTAG+TGG + chr3.1:77258289-77258308 None:intergenic 60.0%
TCTACGACGAAACCAGCCGG+TGG + chr3.1:77258301-77258320 None:intergenic 60.0%
TGAAGTCTCGGGGAGGAGGA+AGG + chr3.1:77258010-77258029 None:intergenic 60.0%
! GCGTAGTGTTGGGTCACGAG+AGG + chr3.1:77258870-77258889 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 77257974 77261547 77257974 ID=MS.gene06355
chr3.1 mRNA 77257974 77261547 77257974 ID=MS.gene06355.t1;Parent=MS.gene06355
chr3.1 exon 77261152 77261547 77261152 ID=MS.gene06355.t1.exon1;Parent=MS.gene06355.t1
chr3.1 CDS 77261152 77261547 77261152 ID=cds.MS.gene06355.t1;Parent=MS.gene06355.t1
chr3.1 exon 77260801 77260898 77260801 ID=MS.gene06355.t1.exon2;Parent=MS.gene06355.t1
chr3.1 CDS 77260801 77260898 77260801 ID=cds.MS.gene06355.t1;Parent=MS.gene06355.t1
chr3.1 exon 77260516 77260558 77260516 ID=MS.gene06355.t1.exon3;Parent=MS.gene06355.t1
chr3.1 CDS 77260516 77260558 77260516 ID=cds.MS.gene06355.t1;Parent=MS.gene06355.t1
chr3.1 exon 77259851 77259933 77259851 ID=MS.gene06355.t1.exon4;Parent=MS.gene06355.t1
chr3.1 CDS 77259851 77259933 77259851 ID=cds.MS.gene06355.t1;Parent=MS.gene06355.t1
chr3.1 exon 77259694 77259758 77259694 ID=MS.gene06355.t1.exon5;Parent=MS.gene06355.t1
chr3.1 CDS 77259694 77259758 77259694 ID=cds.MS.gene06355.t1;Parent=MS.gene06355.t1
chr3.1 exon 77259159 77259214 77259159 ID=MS.gene06355.t1.exon6;Parent=MS.gene06355.t1
chr3.1 CDS 77259159 77259214 77259159 ID=cds.MS.gene06355.t1;Parent=MS.gene06355.t1
chr3.1 exon 77258637 77258696 77258637 ID=MS.gene06355.t1.exon7;Parent=MS.gene06355.t1
chr3.1 CDS 77258637 77258696 77258637 ID=cds.MS.gene06355.t1;Parent=MS.gene06355.t1
chr3.1 exon 77258308 77258340 77258308 ID=MS.gene06355.t1.exon8;Parent=MS.gene06355.t1
chr3.1 CDS 77258308 77258340 77258308 ID=cds.MS.gene06355.t1;Parent=MS.gene06355.t1
chr3.1 exon 77258107 77258172 77258107 ID=MS.gene06355.t1.exon9;Parent=MS.gene06355.t1
chr3.1 CDS 77258107 77258172 77258107 ID=cds.MS.gene06355.t1;Parent=MS.gene06355.t1
chr3.1 exon 77257974 77258018 77257974 ID=MS.gene06355.t1.exon10;Parent=MS.gene06355.t1
chr3.1 CDS 77257974 77258018 77257974 ID=cds.MS.gene06355.t1;Parent=MS.gene06355.t1
Gene Sequence

>MS.gene06355

ATGGCGGCACAGTTACAAACCTTGAATGTTTATCCTTCCTCCTCCCCGAGACTTCAATTTTCCTTTCCTCATTCAACACTCAATCAACCACGCTTCTCATCGTTCTCACTTCGAATTCGAAACCCTCGCTTTCAACCCATTATCTCTAGCGCTTCCAATGTTCAACCAAAGAAGCATTCTCCTTCTTCATCCACCAGAAACAAAAACCCAAAAAACAACAATGATAAGAAGAAGAAGAAGAACAACAAGAGTAATGGTGAAATTGGTGATTCCAATTCCATTTCCAATTCTTCTCTGCCTCAAATTCCTACGCCACTACCTAAACCACCGGCTGGTTTCGTCGTAGATGACACTGGCAAGCTTCTTACTTCTTCAATGGACCGACTTGCCACACTTGTTAGTTTTGAATTTCTTGTTATTATGTATTTTTTCTGTTCTGGTAGATTCAATCATGTTTCTGTGTGTGTTTGAAGTAGTAATTATGAATCGAATTATGCAAGTGGCTGTGGTTAGTTAGTTATTGACGATTTCTGTTATGTTAAGGCACAATCTTTGGTAATTATGATTTGACAGGAATATTATTGCAGGGAATTAGAGTTCAAGAGTTTTATTTAGAATTGTTGTTAATTTTTATGAATATTATTGTTAGGTTGATCCTGCGAACAACCTTCCTTTGGAATGCGTGATAAGGAGAATATTCACAAGTTCTCGAGGAGATGATTGTATGTTGCTATGCCCACTTGACATGTAAGTTAAATGTTTTTAATGTTTAATTCATGGTCTTGTATGATTACAGTTTATATATCTAAGGTTTTAGGGGTGAAAGACGCGGTTTCTAAATCATATGTATGGTTGTTTTTAGCCCAATGTGAAATCTCTCTGATGATTTGGCTCCTCTCGTGACCCAACACTACGCTAAAAATCCAGGGTTTTGATAATCTTTTTTTTTTAGTATTTATTAACTTTAGATTGTGGAATTTTTACTACAGGCCTATACAAATATTACAGAGCACAGGTGATGGATGGTCAGAAGTAAGTTTCCATTTTGTAGTTGAAGTATCAGTTTGCTTGCATTTTCATTGCTGACAATTTAAATAGGACCTTTTAAGTTTTAAAAATAGGACAGACAATTTCTTGTATGATTACGGTTTATATATTCAAGGTTTTAGGGGTGAAAGAAGTGGTTTCATACCATTTTGTACACTCCTTTTATAGTACAGCTGTACAAGTCACTCTTGTTAAAGCTCCAAAACAATTTTGACTTTAGTGATGAATGAAACTCATTGCTTTTATGTGAAAAATAAGAAGACTTTTCCCTACTATGTCTATGCCATGCTTCACAGCCAACCATTGCATATAAAGTTCTAAAGTCTATAAAAATAAGGATGGTTTTGTAAGGCAATCGACAACCTAAATTAAAACTTCGGCAAATCTTCATGAAATGGTCGAATGATTTGATTAAGTTAAAATCTTATATTTTGACAAAAGAGAATGACATCTTTTGATTAGACACATCTATGTACCCAAACCTAGCTAATGGGAAAATCCTTTTGTTTTTGTAGTCGTTTATGTCAAATCTTCATTCAGATTCATGTTTTCTTTCCATGTTTTTAGGTCAGTTACGAGGAGCTTGAGTCTCTTCTGCCTGCTGCTTCTTTTGCACTTGCCAAATTACGAATGCATCTGATTTATAGTGGGTATGCCATATGTCAGTCTTTTCTCATGACAAAGAAAGTTATAAAATTAACTATTGTGCTTGATCACTAAATATTTCTCTCTCTCGTATTAGATACTGTTTTACCGCTCGTGGCGGTTTTTGTTACTCAGAAGAAGACATCTTTGACTTTCATGCAGGCAAGTTCTTTGCTCTTTCTTTTCATTAAACTATGTTCTAACTTCTAACACCAGAGGACAAACAAAAAAGATGTTATATTCAGATTATTGTGGAAGATTTTATAGCTCACAACATGGCTGTTAATACTGTTGAGATTCTATATTTTATGGGTGCTAATTACATCATGCTTTTGACATTATATCTGATCACTTGATCACTAAAAGCTTGAAATTTGTTTGGATACATCCTAGTCAGAGCCTGTCCCTTCTATTTATTCACCTCGCTTTGGTTTCGAAGCCACCTCTGAACTCTCTGATGGCGATATAGCCCTACAAAAAAAATATTTTACAGGGTAAAAGCAAAAAATTGTATATTTACCAGGACTAAAAACATATTTATCATACTCGTTATAATTAGGGAATTCTAAAGTGATAATATGCTTCATAACCATTTGAATTGGACACCCAAAATTTAATGGCTGATGTTTTCCATTTTTTAGATGGTAAAGATGATGGCTTGGCAACTGAGGGTGTAGAAATCACACACTTCAATCAGGTAATCTCAACTTCAATTGCATAAACTGATAAACATGTTATCGCATCCTCACAGTTCAATTAGGTAATCTGTAAAATTAAAATTCGATTTATTATCAAATATTTATACTACATCCTCAAATTTGCATTGGTATACTTGACAACTGTACGAGAATAAAAATTAGCTTACTTCGTTGGATGGTTGCGTGTTCCCAATCATGTTTGCTTTCATTTCTTCTATGAATCAGTATTGTTTATACCAACAGAATTAAATTTTGAACTGAAAAAGTTGTTCTGAGCTTTTATTTTATCGTGTATCTAACTATCTACAGTCATGAAGAGTCGTACTTTTTGTTAAGACAAATTTCCTGTGCATTTTCCCCCATCTAATTTAATATGTTTTCTAAAGTAACATCTAACATGTTACTAATGCTAATACTATTTGAAATAAAGCGGATGGTAACTTATTGGAATTTTGTTGCAGGAAGCAGCGCACTACATGATATATACACCATCTGATCCACTGCTTTTTGTCGCTGCAAAGGTAATCCTCCATATTCAAGTTTGTTAGAGCAACTATTGCCTCTGTTAAACAGTGGCATCACTCCATTTACCTGTGACATTTTCTCTCTACCAAATGCATTTTATAGTGACCGGAAATTGAAGTACTCCTACATTTTTTTCTAATTGGCATGAGAAAATCAAATGCATTTTACAGTGGAGTGAAAACTGTTCAGAATACCTGTGAATTTAGTATTATATTGTTTCCACAATCCACAGTTTATTTATTGGACATGAGAAACCAGTGTTCTAGAGCTGATCATAAATTTATCCTTGCAGGATCAGAATGGAATGCTACAAATCGCTGATGATGTAAGTAGGCACTCCCCACTCATTACAGAGTCTGGCCATTATTTCCTTCTCAGCTCCCATGTATTTCTGATCAGTGTAAGGGTACAAATTCTAATTTGATAATCCCTTGTGTCGCTAATTTCATTTTATGAACAGGAATTGCTTGAGGATCCTGCTGTCATTAGCGCCATAGATGAAGAGACTGAATTTAATGCCTTGGTGGTATGTGATTTAATCTTCCAAAGTAACATTTTTCTTTGGTTATAATGTTTGACTCCACTCATTTCTGTATGTTTTCCCTTACACACAGGAGGAAGAAGCCGCACTCCTTGACTCACTGTTGGGTAAAAGATAA

Protein sequence

>MS.gene06355.t1

MAAQLQTLNVYPSSSPRLQFSFPHSTLNQPRFSSFSLRIRNPRFQPIISSASNVQPKKHSPSSSTRNKNPKNNNDKKKKKNNKSNGEIGDSNSISNSSLPQIPTPLPKPPAGFVVDDTGKLLTSSMDRLATLVDPANNLPLECVIRRIFTSSRGDDCMLLCPLDMPIQILQSTGDGWSEVSYEELESLLPAASFALAKLRMHLIYSGYCFTARGGFCYSEEDIFDFHADGKDDGLATEGVEITHFNQEAAHYMIYTPSDPLLFVAAKDQNGMLQIADDELLEDPAVISAIDEETEFNALVEEEAALLDSLLGKR