AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91483


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91483.t1 MTR_2g084835 91.381 847 66 2 1 844 1 843 0.0 1526
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91483.t1 AT5G22640 50.721 832 361 11 32 831 50 864 0.0 776
MS.gene91483.t1 AT5G22640 62.325 499 184 2 32 530 50 544 0.0 669
MS.gene91483.t1 AT5G22640 52.313 627 252 10 237 831 2 613 0.0 593

Find 214 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGCCATTCTCTCTCTTC+TGG 0.161520 2.1:-16554644 None:intergenic
GGACTGGTGCTTCGGTGTTT+TGG 0.162576 2.1:-16551405 None:intergenic
CCATTCATCCCTCTCATAAT+AGG 0.203599 2.1:-16554717 None:intergenic
TGAACCTTACTTCATAAAAT+TGG 0.221404 2.1:-16556937 None:intergenic
TTGAGAGAGCTTTGGGATAA+TGG 0.233445 2.1:+16551589 MS.gene91483:CDS
TGTTACAGGTTCCTGATTAC+TGG 0.234389 2.1:+16557026 MS.gene91483:intron
GTCGGAATCGGAGGGGCTTT+TGG 0.240082 2.1:-16551305 None:intergenic
GGTTTGATAACCTAGGAAAA+TGG 0.251822 2.1:+16557925 MS.gene91483:CDS
AATTCTTCAATAACATCTTT+AGG 0.263590 2.1:-16551784 None:intergenic
GAAAATTAGTGAAATGAAAA+AGG 0.269320 2.1:+16557962 MS.gene91483:CDS
GATATTGCACCATCGAGTTT+TGG 0.272261 2.1:+16558200 MS.gene91483:CDS
TGAGAGAGCTTTGGGATAAT+GGG 0.275118 2.1:+16551590 MS.gene91483:CDS
ACTAATCATTCTGCTATTAA+AGG 0.278113 2.1:+16551760 MS.gene91483:CDS
CGGCTTTCAGCCTACCCTTT+TGG 0.278462 2.1:-16559318 None:intergenic
CTGAAGGGAAGATAATAAAA+AGG 0.282694 2.1:+16554609 MS.gene91483:CDS
TTCCTATAAGGAAGATAAAA+AGG 0.292162 2.1:-16551718 None:intergenic
TAAAGATGTTATTGAAGAAT+TGG 0.297588 2.1:+16551786 MS.gene91483:CDS
GATGAATGGGTTAAGGAGTT+TGG 0.301803 2.1:+16554731 MS.gene91483:CDS
TGAGGTTCTCTTTGGATGTT+TGG 0.305532 2.1:-16559559 None:intergenic
TTGTTAAGCAGGACAAATTC+AGG 0.305982 2.1:-16557624 None:intergenic
ATTTGAAGTGAGGTTCTCTT+TGG 0.308838 2.1:-16559567 None:intergenic
TGTGAAGTGGAAGCATTATA+AGG 0.309843 2.1:+16551675 MS.gene91483:CDS
CATTCATCCCTCTCATAATA+GGG 0.321040 2.1:-16554716 None:intergenic
TGGCAACCACCTTTGCAAAA+AGG 0.323564 2.1:+16557774 MS.gene91483:CDS
GTCAGTTTCCCTCCTGTGAT+TGG 0.326869 2.1:+16559295 MS.gene91483:CDS
AGAAGATTTGAGAGAGCTTT+GGG 0.329983 2.1:+16551582 MS.gene91483:CDS
TTAGATATGAAGGAACTCTT+TGG 0.332618 2.1:+16552896 MS.gene91483:intron
AATGATTGTTGCAGCTTTGA+TGG 0.333289 2.1:-16559184 None:intergenic
TGCAACAATCATTTCCATTC+TGG 0.336605 2.1:+16559194 MS.gene91483:CDS
TCTTTCCAATTCTCATCATC+AGG 0.337468 2.1:-16551559 None:intergenic
GTTGAGTCAAGAAGTTATTC+AGG 0.343371 2.1:+16559361 MS.gene91483:CDS
ACTTCAAATTTAAGCTTTGA+AGG 0.350865 2.1:+16559581 MS.gene91483:CDS
CAAGCCATTCTCTCTCTTCT+GGG 0.352645 2.1:-16554643 None:intergenic
AAGAAGATTTGAGAGAGCTT+TGG 0.357631 2.1:+16551581 MS.gene91483:CDS
GCAAGTGAAGTTGTAGAAAA+TGG 0.357700 2.1:-16558278 None:intergenic
TTAGTAGGTACAGGAGGAAT+AGG 0.360057 2.1:-16551742 None:intergenic
TCTGGGTCGAATTCGGAGGC+TGG 0.360552 2.1:-16551427 None:intergenic
TTCCACCTGATGATGAGAAT+TGG 0.360876 2.1:+16551554 MS.gene91483:CDS
TGAGAAAGTTGACCCTAAAA+AGG 0.365613 2.1:+16557797 MS.gene91483:CDS
GATAGAAGCTGAATTATGTT+TGG 0.365778 2.1:+16558010 MS.gene91483:CDS
AATGGGAATAACACCATTAC+TGG 0.371101 2.1:+16551607 MS.gene91483:CDS
TAGATATGAAGGAACTCTTT+GGG 0.377987 2.1:+16552897 MS.gene91483:intron
CGGGTCTTCAGGGTCAGGCT+CGG 0.378073 2.1:-16557652 None:intergenic
CCCTCCTGTGATTGGCCAAA+AGG 0.382992 2.1:+16559303 MS.gene91483:CDS
TGTAGAAAATGGTGATTTGC+CGG 0.385046 2.1:-16558267 None:intergenic
TGAGAGGGATGAATGGGTTA+AGG 0.388463 2.1:+16554724 MS.gene91483:CDS
TTCGACATCGAGGTCGTCTT+GGG 0.388583 2.1:-16551359 None:intergenic
TTTCAGCTGCACGCTGGTAT+AGG 0.396522 2.1:+16555710 MS.gene91483:intron
GATAGTTATCTTCTTGCAAA+TGG 0.399040 2.1:+16554680 MS.gene91483:CDS
TATTTAATACCGCTGAAGTT+TGG 0.403494 2.1:-16555601 None:intergenic
TTAATAGCAGAATGATTAGT+AGG 0.408842 2.1:-16551757 None:intergenic
GGAGGAATAGGTTTCCTATA+AGG 0.411609 2.1:-16551730 None:intergenic
TCGAATTCGGAGGCTGGGAC+TGG 0.415203 2.1:-16551421 None:intergenic
CTCATCCTTCACACTCCAAC+CGG 0.421667 2.1:+16557702 MS.gene91483:CDS
CCTGTTATAGAACCTGTTCC+CGG 0.424006 2.1:+16554465 MS.gene91483:CDS
ATTCGACATCGAGGTCGTCT+TGG 0.429381 2.1:-16551360 None:intergenic
GCATGCTGTGGATCATTATA+CGG 0.429585 2.1:-16556866 None:intergenic
CCGGGAACAGGTTCTATAAC+AGG 0.430966 2.1:-16554465 None:intergenic
TATGTTTGGAAGAGGCCATT+GGG 0.431358 2.1:+16558024 MS.gene91483:CDS
GTTTGATAACCTAGGAAAAT+GGG 0.431396 2.1:+16557926 MS.gene91483:CDS
GGAGGCTGGGACTGGTGCTT+CGG 0.434212 2.1:-16551413 None:intergenic
ATCTTGTTTGACTACAGAAC+CGG 0.434750 2.1:-16558126 None:intergenic
TCAATAACACCATGACCCTC+TGG 0.435554 2.1:-16554432 None:intergenic
TTTGACGGGTCTTCAGGGTC+AGG 0.438983 2.1:-16557657 None:intergenic
ACATACTTGGACCCGGGAAC+AGG 0.442435 2.1:-16554477 None:intergenic
AATATGGAATACGTATGTTC+TGG 0.442630 2.1:+16557754 MS.gene91483:CDS
GGGTCTTCAGGGTCAGGCTC+GGG 0.442845 2.1:-16557651 None:intergenic
TTTCTATATCATAGGTATGA+AGG 0.446030 2.1:+16554390 MS.gene91483:intron
TGCCAGCTGAGTTGGAATAC+TGG 0.446775 2.1:+16557128 MS.gene91483:CDS
TATTGCTACGCCTGAGGAAT+GGG 0.447752 2.1:+16551648 MS.gene91483:CDS
TATGTCGAGGATGAGAAATA+TGG 0.449653 2.1:+16557738 MS.gene91483:CDS
CACCATTACTGGTACTGGTT+GGG 0.454895 2.1:+16551618 MS.gene91483:CDS
TCCTCAGGCGTAGCAATAGC+AGG 0.455298 2.1:-16551643 None:intergenic
TTGGAGTCGGAGGGTGGTGG+TGG 0.456046 2.1:-16551286 None:intergenic
AATAACACCATTACTGGTAC+TGG 0.456394 2.1:+16551613 MS.gene91483:CDS
GATACCTATGCCAGCTGAGT+TGG 0.457310 2.1:+16557120 MS.gene91483:CDS
GATCCAACCTTGTTCCAGAA+TGG 0.459069 2.1:-16559208 None:intergenic
CTTCTCCAGATGGACTTGTC+AGG 0.467032 2.1:+16552950 MS.gene91483:CDS
GGATGAGTCGGAGTCGGAAT+CGG 0.467762 2.1:-16551317 None:intergenic
TCATCAGGTGGAAAATCAAA+CGG 0.471502 2.1:-16551544 None:intergenic
ATGTTGTCTAAATCCCTCTC+TGG 0.472786 2.1:-16559496 None:intergenic
GATGATATTGCTCAAGGAAA+AGG 0.473909 2.1:+16552919 MS.gene91483:CDS
CACAACTCACCGCAGAGATA+AGG 0.476851 2.1:-16558316 None:intergenic
ATTGCGTAGAAGAGAGAAAG+AGG 0.477384 2.1:+16558061 MS.gene91483:CDS
CCTATTATGAGAGGGATGAA+TGG 0.477757 2.1:+16554717 MS.gene91483:CDS
GCAGAATGATTAGTAGGTAC+AGG 0.480235 2.1:-16551751 None:intergenic
TTCACATATTCCCATTCCTC+AGG 0.482160 2.1:-16551658 None:intergenic
CAGCTGGCATAGGTATCCTA+AGG 0.486521 2.1:-16557114 None:intergenic
CTTTCTATAGATCTCCCCTT+AGG 0.487320 2.1:+16557098 MS.gene91483:CDS
CTATTGCTACGCCTGAGGAA+TGG 0.488472 2.1:+16551647 MS.gene91483:CDS
GTGAAGTGGAAGCATTATAA+GGG 0.489573 2.1:+16551676 MS.gene91483:CDS
GCTCGGGTTCCTTGTTAAGC+AGG 0.489747 2.1:-16557635 None:intergenic
CCTCCTGTGATTGGCCAAAA+GGG 0.490125 2.1:+16559304 MS.gene91483:CDS
GGAAGAGGCCATTGGGGACA+TGG 0.491646 2.1:+16558031 MS.gene91483:CDS
ACAAACCTGACAAGTCCATC+TGG 0.492218 2.1:-16552955 None:intergenic
GACATAATTGATGATAAATC+CGG 0.492776 2.1:-16557721 None:intergenic
CTGGGTCGAATTCGGAGGCT+GGG 0.494605 2.1:-16551426 None:intergenic
TAAAATTGGTTAATGAAGCC+AGG 0.495775 2.1:-16556923 None:intergenic
CTATTATGAGAGGGATGAAT+GGG 0.496621 2.1:+16554718 MS.gene91483:CDS
TTGAAGTCCCCTATTATGAG+AGG 0.496719 2.1:+16554708 MS.gene91483:CDS
AGAGAGAGAATGGCTTGATA+AGG 0.498294 2.1:+16554649 MS.gene91483:CDS
CTAAACATCATACTTCCATC+TGG 0.499339 2.1:-16555773 None:intergenic
TAGGTTATCAAACCATGGCT+TGG 0.500218 2.1:-16557916 None:intergenic
GATTGAAGAGTTTCTCAAAT+GGG 0.501735 2.1:+16551813 MS.gene91483:CDS
AGCTGAATTATGTTTGGAAG+AGG 0.502575 2.1:+16558016 MS.gene91483:CDS
TTTCCATTCTGGAACAAGGT+TGG 0.503912 2.1:+16559205 MS.gene91483:CDS
GTTCACAAACATGCGAGCCT+TGG 0.504894 2.1:-16555747 None:intergenic
GAACCGGTATCATCTTCATC+TGG 0.507816 2.1:-16558110 None:intergenic
TTATGTTTGGAAGAGGCCAT+TGG 0.510151 2.1:+16558023 MS.gene91483:CDS
GAAGAAGCAATGCGAGCTGA+AGG 0.512756 2.1:+16554593 MS.gene91483:CDS
GGATTGAAGAGTTTCTCAAA+TGG 0.515739 2.1:+16551812 MS.gene91483:CDS
ATCATTTCCATTCTGGAACA+AGG 0.521145 2.1:+16559201 MS.gene91483:CDS
TGAGTCGGAGTCGGAATCGG+AGG 0.524147 2.1:-16551314 None:intergenic
TGTCCCCAGAAGAGAGAGAA+TGG 0.525180 2.1:+16554639 MS.gene91483:CDS
ACACCATTACTGGTACTGGT+TGG 0.525319 2.1:+16551617 MS.gene91483:CDS
CTTCATCTTCTTCATCTACA+CGG 0.528670 2.1:-16558157 None:intergenic
ATACGCGCATGAAGTAGATC+AGG 0.529667 2.1:+16557054 MS.gene91483:CDS
ATCAGCGATGTGAAAACAGC+TGG 0.530970 2.1:+16559268 MS.gene91483:CDS
CTTTGGGATGATATTGCTCA+AGG 0.531578 2.1:+16552913 MS.gene91483:CDS
TTCATCTTCTTCATCTACAC+GGG 0.533739 2.1:-16558156 None:intergenic
AAAGGTCGCTATCGTTATGC+TGG 0.534373 2.1:+16554878 MS.gene91483:CDS
CATCAGGTGGAAAATCAAAC+GGG 0.534536 2.1:-16551543 None:intergenic
GCTGCATGCGGCACCAGAGA+GGG 0.535166 2.1:+16559483 MS.gene91483:CDS
CAGCATGCTTACTTGTATGA+AGG 0.538200 2.1:+16556881 MS.gene91483:CDS
CAAAGCTTAAATTTGAAGTG+AGG 0.539205 2.1:-16559577 None:intergenic
ATCATAGGTATGAAGGTGAA+TGG 0.539261 2.1:+16554397 MS.gene91483:intron
AGGTGAAGTTGCTGCTGCCA+AGG 0.539918 2.1:+16555730 MS.gene91483:CDS
TGAAGAAGATGAAGATGATG+AGG 0.540232 2.1:+16558166 MS.gene91483:CDS
GGTTTCTGATTCTGCGTCGG+AGG 0.541799 2.1:-16551338 None:intergenic
GAGTCGGAGTCGGAATCGGA+GGG 0.542592 2.1:-16551313 None:intergenic
CAGATATACATACTTGGACC+CGG 0.543991 2.1:-16554484 None:intergenic
GTAGAAAATGGTGATTTGCC+GGG 0.546033 2.1:-16558266 None:intergenic
ATGTTATTGAAGAATTGGAT+AGG 0.546328 2.1:+16551791 MS.gene91483:CDS
CACCAGTATTCCAACTCAGC+TGG 0.548245 2.1:-16557130 None:intergenic
GGTGTTTATACTTCTCCAGA+TGG 0.549999 2.1:+16552940 MS.gene91483:CDS
TTGGGTTTCTGATTCTGCGT+CGG 0.552974 2.1:-16551341 None:intergenic
ATGAAGCATGGGAGGATGCA+TGG 0.553835 2.1:+16554905 MS.gene91483:CDS
CTGTTATAGAACCTGTTCCC+GGG 0.558902 2.1:+16554466 MS.gene91483:CDS
TGCTTACTTGTATGAAGGAG+AGG 0.559972 2.1:+16556886 MS.gene91483:CDS
TGAATTTGTCCTGCTTAACA+AGG 0.563327 2.1:+16557626 MS.gene91483:CDS
AACAAGGTTGGATCAAAACC+AGG 0.568503 2.1:+16559217 MS.gene91483:CDS
TTCCAATTCTCATCATCAGG+TGG 0.569444 2.1:-16551556 None:intergenic
CAATAACACCATGACCCTCT+GGG 0.570495 2.1:-16554431 None:intergenic
TTCTGCGTCGGAGGATGAGT+CGG 0.571987 2.1:-16551329 None:intergenic
GAGGATGTGTGGATGGCACC+TGG 0.574763 2.1:+16556905 MS.gene91483:CDS
TTCAGGTGGGAGATTTCTTG+AGG 0.575981 2.1:+16559378 MS.gene91483:CDS
AGAAATATTGGATGATGATG+AGG 0.576592 2.1:+16555568 MS.gene91483:CDS
GAAATATTGGATGATGATGA+GGG 0.577055 2.1:+16555569 MS.gene91483:CDS
TATTCCAACTCAGCTGGCAT+AGG 0.578083 2.1:-16557124 None:intergenic
TTGGAATACTGGTGGTCCAA+AGG 0.580088 2.1:+16557139 MS.gene91483:CDS
ATCAAAGACAGATCAGCAGA+AGG 0.580464 2.1:+16558238 MS.gene91483:CDS
AAGCTTAAGACGCTCCCATA+CGG 0.582795 2.1:-16557877 None:intergenic
TATGCTGGTCAGATGAAGCA+TGG 0.583444 2.1:+16554893 MS.gene91483:CDS
CGAAACGACCCAGAGGGTCA+TGG 0.583757 2.1:+16554423 MS.gene91483:CDS
TTGTTCTGGGTCGAATTCGG+AGG 0.585869 2.1:-16551431 None:intergenic
ATGTGATCAATGTGTTGCGC+AGG 0.586670 2.1:-16559247 None:intergenic
TGTATGAAGGAGAGGATGTG+TGG 0.586754 2.1:+16556894 MS.gene91483:CDS
GATCAGCAGAAGGGAAAACC+CGG 0.587447 2.1:+16558248 MS.gene91483:CDS
CCCTGCTATTGCTACGCCTG+AGG 0.591197 2.1:+16551642 MS.gene91483:CDS
CTGTGATTGGCCAAAAGGGT+AGG 0.593200 2.1:+16559308 MS.gene91483:CDS
TTTCCTAGGTTATCAAACCA+TGG 0.593326 2.1:-16557921 None:intergenic
GAGTCAAGAAGTTATTCAGG+TGG 0.594211 2.1:+16559364 MS.gene91483:CDS
TTGCCAGATGAAGATGATAC+CGG 0.595416 2.1:+16558107 MS.gene91483:CDS
CATGGGAGGATGCATGGATG+TGG 0.599968 2.1:+16554911 MS.gene91483:CDS
TAACTCTTCCATGTCCCCAA+TGG 0.600348 2.1:-16558039 None:intergenic
TGAAGTCCCCTATTATGAGA+GGG 0.600859 2.1:+16554709 MS.gene91483:CDS
AGATATACATACTTGGACCC+GGG 0.601167 2.1:-16554483 None:intergenic
GTCCCAACCAGTACCAGTAA+TGG 0.601866 2.1:-16551620 None:intergenic
ATGGACCTACATATATGATA+CGG 0.601879 2.1:-16554952 None:intergenic
TCAAAGACAGATCAGCAGAA+GGG 0.602574 2.1:+16558239 MS.gene91483:CDS
AAGAAGCAATGCGAGCTGAA+GGG 0.605218 2.1:+16554594 MS.gene91483:CDS
AGTCAAGAAGTTATTCAGGT+GGG 0.607587 2.1:+16559365 MS.gene91483:CDS
TAATTGATGATAAATCCGGT+TGG 0.607681 2.1:-16557717 None:intergenic
TCAATAGACCCAAAACTCGA+TGG 0.608158 2.1:-16558209 None:intergenic
TCAAAAGAGCGAAGAATGAG+TGG 0.612655 2.1:+16559451 MS.gene91483:CDS
AGCTGGCATAGGTATCCTAA+GGG 0.613587 2.1:-16557113 None:intergenic
TTCTAGCAGCCTTATCTCTG+CGG 0.613883 2.1:+16558307 MS.gene91483:CDS
GGCTGCATGCGGCACCAGAG+AGG 0.614419 2.1:+16559482 MS.gene91483:CDS
GTCGGAGGATGAGTCGGAGT+CGG 0.616817 2.1:-16551323 None:intergenic
ATTTATCATCAATTATGTCG+AGG 0.618144 2.1:+16557725 MS.gene91483:CDS
ATGCTGGTCAGATGAAGCAT+GGG 0.619110 2.1:+16554894 MS.gene91483:CDS
TGGCAACATGTGGCTGCATG+CGG 0.619737 2.1:+16559471 MS.gene91483:CDS
TGTTGCGCAGGAACTAACCC+TGG 0.620055 2.1:-16559235 None:intergenic
GAATGATTAGTAGGTACAGG+AGG 0.622571 2.1:-16551748 None:intergenic
AGTCATCATAACCATCGGGT+AGG 0.627073 2.1:-16557827 None:intergenic
TAGATCAGGAAAGAGAAATG+TGG 0.627095 2.1:+16557068 MS.gene91483:CDS
ATGTTTGTGAACAAGCCAGA+TGG 0.628868 2.1:+16555758 MS.gene91483:CDS
TGTCAATTTCAGCTGCACGC+TGG 0.629404 2.1:+16555704 MS.gene91483:intron
GTTGGAGTGTGAAGGATGAG+AGG 0.631119 2.1:-16557699 None:intergenic
ATTCATCCCTCTCATAATAG+GGG 0.633266 2.1:-16554715 None:intergenic
TGAAGGAGAGGATGTGTGGA+TGG 0.635250 2.1:+16556898 MS.gene91483:CDS
TCATACAAGTAAGCATGCTG+TGG 0.635472 2.1:-16556878 None:intergenic
ATGTTTGGAAGAGGCCATTG+GGG 0.639745 2.1:+16558025 MS.gene91483:CDS
AAGCCATTCTCTCTCTTCTG+GGG 0.643213 2.1:-16554642 None:intergenic
CGGTCGAGTCTGAGACATAG+AGG 0.649168 2.1:-16559404 None:intergenic
AAGGGTAGGCTGAAAGCCGT+CGG 0.650840 2.1:+16559322 MS.gene91483:CDS
AGGAATGGGAATATGTGAAG+TGG 0.653783 2.1:+16551662 MS.gene91483:CDS
AAGGCTATATTCCTACCCGA+TGG 0.656178 2.1:+16557816 MS.gene91483:CDS
CCTCAGGCGTAGCAATAGCA+GGG 0.658702 2.1:-16551642 None:intergenic
AGTCGGAGTCGGAATCGGAG+GGG 0.659300 2.1:-16551312 None:intergenic
CTGGTCAGATGAAGCATGGG+AGG 0.660225 2.1:+16554897 MS.gene91483:CDS
AAGCCATGGTTTGATAACCT+AGG 0.662376 2.1:+16557918 MS.gene91483:CDS
TTAAGCAGGACAAATTCAGG+AGG 0.663739 2.1:-16557621 None:intergenic
TGGTTTCGAAACGACCCAGA+GGG 0.666508 2.1:+16554417 MS.gene91483:CDS
TAAATCCGGTTGGAGTGTGA+AGG 0.671748 2.1:-16557707 None:intergenic
GTCAAAACTCATATATACTG+AGG 0.684772 2.1:+16557674 MS.gene91483:CDS
GAAGAATGAGTGGCAACATG+TGG 0.687291 2.1:+16559461 MS.gene91483:CDS
ATGTGATGACCAAACTTCAG+CGG 0.697886 2.1:+16555592 MS.gene91483:CDS
TGAGATAAGATTCGACATCG+AGG 0.702508 2.1:-16551369 None:intergenic
CAGCTGAGTTGGAATACTGG+TGG 0.706946 2.1:+16557131 MS.gene91483:CDS
ACAAGGTTGGATCAAAACCA+GGG 0.708459 2.1:+16559218 MS.gene91483:CDS
ATGGTTTCGAAACGACCCAG+AGG 0.719076 2.1:+16554416 MS.gene91483:CDS
GCTGGCATAGGTATCCTAAG+GGG 0.735218 2.1:-16557112 None:intergenic
GCAGTGGTTAGAGAAAAGAG+AGG 0.769842 2.1:+16556842 MS.gene91483:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr2.1 gene 16551259 16559600 16551259 ID=MS.gene91483
chr2.1 mRNA 16551259 16559600 16551259 ID=MS.gene91483.t1;Parent=MS.gene91483
chr2.1 exon 16551259 16551863 16551259 ID=MS.gene91483.t1.exon1;Parent=MS.gene91483.t1
chr2.1 CDS 16551259 16551863 16551259 ID=cds.MS.gene91483.t1;Parent=MS.gene91483.t1
chr2.1 exon 16552900 16552971 16552900 ID=MS.gene91483.t1.exon2;Parent=MS.gene91483.t1
chr2.1 CDS 16552900 16552971 16552900 ID=cds.MS.gene91483.t1;Parent=MS.gene91483.t1
chr2.1 exon 16554404 16554493 16554404 ID=MS.gene91483.t1.exon3;Parent=MS.gene91483.t1
chr2.1 CDS 16554404 16554493 16554404 ID=cds.MS.gene91483.t1;Parent=MS.gene91483.t1
chr2.1 exon 16554589 16554762 16554589 ID=MS.gene91483.t1.exon4;Parent=MS.gene91483.t1
chr2.1 CDS 16554589 16554762 16554589 ID=cds.MS.gene91483.t1;Parent=MS.gene91483.t1
chr2.1 exon 16554874 16554964 16554874 ID=MS.gene91483.t1.exon5;Parent=MS.gene91483.t1
chr2.1 CDS 16554874 16554964 16554874 ID=cds.MS.gene91483.t1;Parent=MS.gene91483.t1
chr2.1 exon 16555551 16555613 16555551 ID=MS.gene91483.t1.exon6;Parent=MS.gene91483.t1
chr2.1 CDS 16555551 16555613 16555551 ID=cds.MS.gene91483.t1;Parent=MS.gene91483.t1
chr2.1 exon 16555716 16555782 16555716 ID=MS.gene91483.t1.exon7;Parent=MS.gene91483.t1
chr2.1 CDS 16555716 16555782 16555716 ID=cds.MS.gene91483.t1;Parent=MS.gene91483.t1
chr2.1 exon 16556846 16556949 16556846 ID=MS.gene91483.t1.exon8;Parent=MS.gene91483.t1
chr2.1 CDS 16556846 16556949 16556846 ID=cds.MS.gene91483.t1;Parent=MS.gene91483.t1
chr2.1 exon 16557034 16557160 16557034 ID=MS.gene91483.t1.exon9;Parent=MS.gene91483.t1
chr2.1 CDS 16557034 16557160 16557034 ID=cds.MS.gene91483.t1;Parent=MS.gene91483.t1
chr2.1 exon 16557607 16558328 16557607 ID=MS.gene91483.t1.exon10;Parent=MS.gene91483.t1
chr2.1 CDS 16557607 16558328 16557607 ID=cds.MS.gene91483.t1;Parent=MS.gene91483.t1
chr2.1 exon 16559181 16559600 16559181 ID=MS.gene91483.t1.exon11;Parent=MS.gene91483.t1
chr2.1 CDS 16559181 16559600 16559181 ID=cds.MS.gene91483.t1;Parent=MS.gene91483.t1
Gene Sequence

>MS.gene91483

ATGTTTCTCCTTCGCCGCTTCCAAAAACCACCACCACCCTCCGACTCCAAAAGCCCCTCCGATTCCGACTCCGACTCATCCTCCGACGCAGAATCAGAAACCCAAGACGACCTCGATGTCGAATCTTATCTCAACTCATTCATCGCCCAAAACACCGAAGCACCAGTCCCAGCCTCCGAATTCGACCCAGAACAAAACTTCAAAGACGTAATCGAAGCTTATCATTCCGAAAAAGTTCAAAAATACTACGACAAAAAAACTCGTCGCAAGGTTAAACATCGTAACCCGTTTGATTTTCCACCTGATGATGAGAATTGGAAAGAAGAAGATTTGAGAGAGCTTTGGGATAATGGGAATAACACCATTACTGGTACTGGTTGGGACCCTGCTATTGCTACGCCTGAGGAATGGGAATATGTGAAGTGGAAGCATTATAAGGGACAAGATGTTCCTATTGCTCCTTTTTATCTTCCTTATAGGAAACCTATTCCTCCTGTACCTACTAATCATTCTGCTATTAAAGGTCCTAAAGATGTTATTGAAGAATTGGATAGGATTGAAGAGTTTCTCAAATGGGTTAGCTATGTTTTTGAAGATGGTAGCACGTATGTTATAAAAATTCTTCTTTTCATTTTTTACTTTTTTTTTTTTTTTTTTTTAATGTTAGTATATAGTTTGTCCCGTAAGTACAACTTAGTTGTTAGCTGCATTGACGTTAATATGGATGGGTCTGAGCAGACCGAGATTGAACATGTGATTCTCTACTTCTCCACATTTAAGGTGTGTGAGTCTAGGACTGAGATTCACTGACTTTAAGACGGGAAAGTCAAGTGACTTTACTCTTTAGTGTAATTTTTGTTTTATGAAAGAGAAACCATAAATAAGATGAGAGAGAGATAGACACAGAGTCTCTCTGACTTTCCCGCTTTAAAGTCACTGGATGCCAATTTGTGAGTATAGCCACTAGACTATTTGACCAGAACACAATATTTATCTATGTAGGGCGGCTCAAATAATAAACATGCTTGGCTTTGTAGGGTGCTCTAAAATAGGTCACTGAGATTATGAATACTTCATAAATGGCCCGACTCTGGTTAATTTTACTCATATTTATCATTCTGAAAGTATGTTAGAGACTAAATTGATAGTAAGTGGTTAAAAATAGAGACCAAATTTATAGTAAGTTGTTAAAATACAAGGACCTAATTGATAATGAGTGGTTAAACATAGTAAACTTGACAGCTTGATAGAGATAAGGACCTTTTCGAAATATTTATAATCTTAGGGACATGTTTGAGAGCATTCTACAAAATAAGAGACTAGTTTGGTGGTTTACTCATAGTTTGTCTCTGTTTTGTTCAGTGTTGGTAAATAGAGGCTATTGCAAGGTGGAATTTAAGCAAATAGTTATTGTTCGGCAATAAGGTGTTTAGTACAATATTGTCGAATGGTGGCGTTGTAGTAGTGTTGCATAGAAGAATTTAAACAAGGGAAATGCTAACAAGTGCCCGAAGGACACTTGATAAGAAGCTTAAAGTTAGCATAACCCTTTAAAAACAAATGCCTATTTTGTGCCGGCTGCGATTGACAATACTGGTTTTGTTTGTTATTCATTAATGTTTTGTGTTGCTAAATTTTTAGATATGAAGGAACTCTTTGGGATGATATTGCTCAAGGAAAAGGTGTTTATACTTCTCCAGATGGACTTGTCAGGTTTGTTTTTGCTACATTGTTTTGGCATGCAGTTGGTGCTGTTAGTTATGCTTAAATGGTTTAGGTGGTAGTGGAAGTGGTAAATAGAACAAGATAGAATGAGATACAGGCCCTGTTTGGGTAAACAGCTTAGTTAAGCACTTATTGCATGATCACTTATCATATACGTGCTTATGTATAAGCCATTATTTTAATAAAAGGTAAAGTAGAGTTAAATTTTTGCATAAGCTATCATAGCGAACTTATGAAAATAAGCTGAAAACAATTTATGGACACGTCATAAACTGTTTATATCAGCTCTCCCAAACAGTACCGTAATTGTCTGTGTGTGTTGGGGTTGGAGGGGACTTTTAGGATGTTACGACAATGGCATTCACAATCGTGAATGTATTTCCGTAGGGGCGTAGTCAAAAGGTGACTTTAGAGAAATCTTTCTTGACCATTGATAGTAATCTGATCGTTGAAATTGATTTGCTAAATTCACGATACAAGCCATCACTGATGTTGGTGATTTGCCTGGTTGTGTGATCATAGGGGACTGCTACCGTAGGCAATACAAGTTTTGTTAGTTAAACACAGGACTGATAGGGGAGCTGGAAAAACAAAAACCATTCATACCTGATAGTACATATGCTATGTCTCCACATGCAAAAGCCAATTGGGCCTGATGCACAAACAAACCGCTGACCAACACATTACTTGGAAATTTGATATAGGCGGCAAACAAAGGACCAAGCTTTTGGTCTTTGACGAGGTTTTGTTACTGTATCAATGAATTGACTATCCTACTTTGACAAACTTAGTTACAGAGAAGGAGGAAACAATCTTGAAATTGAAAGAAAACTTTGATGATGATATATTTGGGTGTATATATAGTTTTATTATTTTATTTTTCTTCTGATGAATAAATAGTTTTATTGAGTATATTTGTCTCAGTTGGGAGCTGCAAGGACAATAATATGCCGGGGTCGGGGTTCGAAACCTAGATTCCCGACTAAGCTACGCGACCAAAAACAAATAAATAAATTATATTTATAATAGTTTATATATAATACAATATACTAATATACATGTTTTGGTGGGGGGTGGCTGGGTTGGAGCCCCTGCTTCCCCCTTCAATATGTCCCTGTTGGAGAGGTTTTCGTAATTAACCATTGAATACGAAGTGTTATCCAAGTTGGCTAACTACCCAAAAAAAAGTGACAGAACTTGATTAAAATGAGTTAAATAATGCATCTATTTGTCATGTTTTCTGCGGCTTCATGGTAATGATCGAGGCCTTTGACTTTGTTTGATAATGGTTTTAATTGCTGTGAGTATTTGCTTGTGTTCCTGCATTAGATGTATTAGCTTCATCATATCTTTTTATGCCACTGCATTGTGTAACACTTTCTTGTCACAGATATTTTACAGTGTATTTTCTATATCATAGGTATGAAGGTGAATGGTTTCGAAACGACCCAGAGGGTCATGGTGTTATTGAAGTTGAAGTACCTGTTATAGAACCTGTTCCCGGGTCCAAGTATGTATATCTGAAGTCTTAGATTGTACCACAGTTTAAAATTGTGTTCAATTTATTGCATACAAAACTTTGAATGCTTTTATCGATGTCATCAGACTTGAAGAAGCAATGCGAGCTGAAGGGAAGATAATAAAAAGGGATTTTATGTCCCCAGAAGAGAGAGAATGGCTTGATAAGGATATTGAAGATAGTTATCTTCTTGCAAATGGCAACTTTGAAGTCCCCTATTATGAGAGGGATGAATGGGTTAAGGAGTTTGGAGAAAAGCCGTAAGTTCAATTCTTGATTCTCGCTCTAGACATCATGCTGCATTGTCTCTATTTTGGTTTCTCTCTGATACGTTGTAACTGGTCTGAAAAAAACTGTATTTTCGTGGCCAGGGAGAAAGGTCGCTATCGTTATGCTGGTCAGATGAAGCATGGGAGGATGCATGGATGTGGTGTATATGAAATTAATGACCGTATCATATATGTAGGTCCATGGAGTAGATAAAGTTTATGTGTCACTGTTAACTCCAATCAACAACTTACTTTTCAAATTTATAAAAAAAGGGGGAGAGGAAGCTGGACTTTTTTAAGATAAAAATAAGGTTTTAAATAGTATACACTGTTAGTTTAAAAGTTTTTTACACGGTCAATCAATTATAATCGTCAGATCATTAAAAACGTTTGACTCTAATAATAATAATTACTTGTAAAATCACACACATGCTTGATTATGATTTGTTATCAGTGTAAAACTTTTTACATTGACAGTGTATTAAAATTAAACTCAAAACATAATTGTAGAAAATAACACGATTTGCTTTAGCTTTCTGGAAAGTGTCAGTAAATTAATTATGCTTATGGAGACCTTTATACATTTTTAACTCAAAATATTGCAATTTAAAGTATAAGATGTACCACCTGATTTATGTGATTGAACCTTGCAACTAAATTCAAAGGTTAGGAAATGCTAGTCATCTCAACATAAGGGAAAAATACATTTTCATCTTACTTGACTCACATATAGGATTCCTCTTTTCTTTTATATTTATTACATTATCTGTGCCATGCAGGGTAGATTTTATTTTGGAGAAATATTGGATGATGATGAGGGATGTGATGACCAAACTTCAGCGGTATTAAATACTCTTCACATATGAAAATTAAAAAATAATATTAGTAATTTGAGAGGTGTGGCAATATCTCATTCTGACTGTCTGACATTCTGTCAATTTCAGCTGCACGCTGGTATAGGTGAAGTTGCTGCTGCCAAGGCTCGCATGTTTGTGAACAAGCCAGATGGAAGTATGATGTTTAGTCTAGACGAAACTTGAAATTGAAAGCCTCGTATTCATGGTTTTGTTTTTGGTCATTGACTTTCCTCTGTCTGTTTGATAGATCCATTCATTAGCACACATGTTACTACGTATTAAGATGTACTCCCTCCGGAATGAAATATAAGCAAAAGTGCTAGTTGAAAAGTCAATGTATGTGGTTAAAAATTTAGTCTGCATACATCAACTTTTCAACTACCTTTTTTGCTTATATTTCATTCCGGATGGAGTACAGATTCATGTTCTACTATCTTATCCTTCCTCCGACATCTCCTTCTTGCCATTTAAACATATCAATACCAAGTAAGATTTAAGAACACCCATCACCAGTGTTCTTTTCCAATTTGTGGCTAAGTCATGATATAAAGACCAATTGGAACTTTACATCATATTTATTGATAACACTCGATATGGCTGGAACTGCAAACATGAGATAAAACCTGTTAGCCCTTGATCGGTGCAGCAGATATATGTTGTGGCCAATTGCTTTGTTCTGCATGTTTTTTTTCTACAAGCTAGTCCTTTTCATTACTCTTGGGTTTTGCCTTTGGTCTACCTCTGCTATGTAGCAGTGTTGTTCACCCTTTTTGGTTTTATGTTTTCTGTTAGGTGTATATTTATTCAATACCAATTGGCAATTATATACAAACCTTTATTTTCGGGTTTCTTCTTATCTTTTATACATTTGCACTTTTGCAGTATAAATTATTTGAGTTGTATATAAACTCCTAAGCGTGACAGACTTGCTACTATCGTTATTCCACTATAATTGTTTTGAGGTCGCTGTTCCATGCAGTTATCCTGGATGGAGAACTATGCATCACAAATATGTTAATGATCAGATTCACCTCTTTACCCTTTGACAATCATCTCAACAATTGATGATGGTTTAATATGCATGTTGATTATTGGCATACTAGTAGTCTTTCAACTTTTGTAATATGATATTTTCCATGTTTCCTTTTCTTGATTGGCACCATACTGTTTTTAATCTTGTTATTTTTCATTTATCATAAGATATTTTGTCTGTGCAGTGGTTAGAGAAAAGAGAGGTCCGTATAATGATCCACAGCATGCTTACTTGTATGAAGGAGAGGATGTGTGGATGGCACCTGGCTTCATTAACCAATTTTATGAAGTAAGGTTCACTAGAAAATCTTAAATGCATTGCTTATTTTCATTTTATGCAAGGAAACGAAACATGCATATGATTCTGTTACAGGTTCCTGATTACTGGAAAACATACGCGCATGAAGTAGATCAGGAAAGAGAAATGTGGTTGAACTCTTTCTATAGATCTCCCCTTAGGATACCTATGCCAGCTGAGTTGGAATACTGGTGGTCCAAAGGTATTTAGAGCCCATTTGTTACAGTTTTTTTTTTTTTGGTGAAAAAGTCACGTATTTATTATAAAAAGATAATAACTTTTAGAAGTTTTGATCCGTTTGTTACAGATTTTCAAAAAATCATAATCTGAAAAGAAAAAAAAAATACTTAAGATGAGAAGCTGTTTTCAGCAGTTCCTGTTAAAAATCATTTTTGATAATTGATTTTTTATTTTTAAAAAGTGATTTTCATTATGGTGAAAAATACATAAAATAGCTTATGTTTTTCTTTTAAAAAGCTCTAAAAACTAATCTCCAAATTATTGAATATTAAAATCACTTTTTTTATAATCCGTAACAAACAGACCTTAGTCTTTCTCTTTTTCTGTATGAACAAGTACACAATTGGAATTTGGAAACAACGAGTTTATTCTAAATAACTGATTTCTTCCTCCAAATCCCTTGACCAGAGGAGAATAACAAGCCTCCTGAATTTGTCCTGCTTAACAAGGAACCCGAGCCTGACCCTGAAGACCCGTCAAAACTCATATATACTGAGGATCCTCTCATCCTTCACACTCCAACCGGATTTATCATCAATTATGTCGAGGATGAGAAATATGGAATACGTATGTTCTGGCAACCACCTTTGCAAAAAGGTGAGAAAGTTGACCCTAAAAAGGCTATATTCCTACCCGATGGTTATGATGACTTTTTTGGGATAGATAAGAACAAAAAGACCGTATGGGAGCGTCTTAAGCTTGCAATTGAAAAAGTGTCCAAGCCATGGTTTGATAACCTAGGAAAATGGGCTGAAGAACAGAAGAAAATTAGTGAAATGAAAAAGGAGGCACTTGAGAAAGAACTTGAACTGATAGAAGCTGAATTATGTTTGGAAGAGGCCATTGGGGACATGGAAGAGTTATTGCGTAGAAGAGAGAAAGAGGAGAAAAAGAAGGCGGAATCGGGGTTGCCAGATGAAGATGATACCGGTTCTGTAGTCAAACAAGATGAAAAAGCCCGTGTAGATGAAGAAGATGAAGATGATGAGGAAGACGAAGATGATATTGCACCATCGAGTTTTGGGTCTATTGAGCAGGAATCAAAGACAGATCAGCAGAAGGGAAAACCCGGCAAATCACCATTTTCTACAACTTCACTTGCATTTACTTCTAGCAGCCTTATCTCTGCGGTGAGTTGTGATTTTTCTCTTCTTCTACAACCATTGAGCAGTTTTATAAAGTTAAGACAACTAATATGCTACCAATTTTTGTATTATTCTTTGATTAAACAATTTTTTTTTTTTTTTTACAAGTTAGCTTACAGGTTATTTGACTCTTATTAACCCTTGTGTGTATGTGTGTTGACTTTTCTCACAATACAGATTTTAAGAATCACATGAGGCATGATGAATCATATTTTTGCAACAGAGAAATTATATTTTGACACAAAATTGACATACAAAATAATTGGTTAACGAACAACAAAGACATGGTGCATTATGTTCAGCAGATGGTTAACAGGTATAACAAGTATCGAAACTCATTAACCATTCATTGAATGTAATTAACCACAAATTCGATCAGTGGTTAATTACATTTAGTGAATGATTAATGAGTTTCATCATCTGTTATACTCATTAAACATTCATTGTACAGATAATTAACCACGTAGTTGAACTCAAGTGGTAACCAACTATTGGCATCAATTCTTGTGTCAAAGTATCATTCTTTTGCAATATTATTCAAATTACAATCACCAACTCTAAAGTTGAAATTAGGGTACTGCTTCACTGTCTGTTGCTCACAAATCATGTAACATTTCATTCCTTTAGTGTATATATGTTTTGTGAAGGCATATGAGATTGCTAGTGATTGTGTATAACTGTATATCTCGGTATGCTTGTAACACTGTGCCAAGGAGCAAAACATATGTCATGTTGGTCATCCTAATTGCACCTCATTTCAATATGTAGAATTGAAACTGTTTGAGTTGGTTATTAGCAAGTTCTTGAATATTTTATCGTTGTCATTTGGCTTTTCAGGTTCCATCAAAGCTGCAACAATCATTTCCATTCTGGAACAAGGTTGGATCAAAACCAGGGTTAGTTCCTGCGCAACACATTGATCACATCAGCGATGTGAAAACAGCTGGTTCAGTCAGTTTCCCTCCTGTGATTGGCCAAAAGGGTAGGCTGAAAGCCGTCGGTAAAGCACATGAAAAAGTTGAGTCAAGAAGTTATTCAGGTGGGAGATTTCTTGAGGCATCCTCTATGTCTCAGACTCGACCGTGTTATACGACTTCAAAAAGTAACTCAAAAGAGCGAAGAATGAGTGGCAACATGTGGCTGCATGCGGCACCAGAGAGGGATTTAGACAACATACTCTCTCTGCATTCAGCTTCATCAATGTACAATTTTTATCCAAACATCCAAAGAGAACCTCACTTCAAATTTAAGCTTTGA

Protein sequence

>MS.gene91483.t1

MFLLRRFQKPPPPSDSKSPSDSDSDSSSDAESETQDDLDVESYLNSFIAQNTEAPVPASEFDPEQNFKDVIEAYHSEKVQKYYDKKTRRKVKHRNPFDFPPDDENWKEEDLRELWDNGNNTITGTGWDPAIATPEEWEYVKWKHYKGQDVPIAPFYLPYRKPIPPVPTNHSAIKGPKDVIEELDRIEEFLKWVSYVFEDGSTYEGTLWDDIAQGKGVYTSPDGLVRYEGEWFRNDPEGHGVIEVEVPVIEPVPGSKLEEAMRAEGKIIKRDFMSPEEREWLDKDIEDSYLLANGNFEVPYYERDEWVKEFGEKPEKGRYRYAGQMKHGRMHGCGVYEINDRIIYGRFYFGEILDDDEGCDDQTSALHAGIGEVAAAKARMFVNKPDGMVREKRGPYNDPQHAYLYEGEDVWMAPGFINQFYEVPDYWKTYAHEVDQEREMWLNSFYRSPLRIPMPAELEYWWSKEENNKPPEFVLLNKEPEPDPEDPSKLIYTEDPLILHTPTGFIINYVEDEKYGIRMFWQPPLQKGEKVDPKKAIFLPDGYDDFFGIDKNKKTVWERLKLAIEKVSKPWFDNLGKWAEEQKKISEMKKEALEKELELIEAELCLEEAIGDMEELLRRREKEEKKKAESGLPDEDDTGSVVKQDEKARVDEEDEDDEEDEDDIAPSSFGSIEQESKTDQQKGKPGKSPFSTTSLAFTSSSLISAVPSKLQQSFPFWNKVGSKPGLVPAQHIDHISDVKTAGSVSFPPVIGQKGRLKAVGKAHEKVESRSYSGGRFLEASSMSQTRPCYTTSKSNSKERRMSGNMWLHAAPERDLDNILSLHSASSMYNFYPNIQREPHFKFKL