Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28404.t1 | RHN43095.1 | 99.6 | 258 | 1 | 0 | 1 | 258 | 67 | 324 | 5.70E-137 | 496.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28404.t1 | Q2JS42 | 66.5 | 236 | 79 | 0 | 15 | 250 | 2 | 237 | 5.6e-85 | 315.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28404.t1 | A0A396GWA1 | 99.6 | 258 | 1 | 0 | 1 | 258 | 67 | 324 | 4.1e-137 | 496.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049246 | MS.gene28404 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene050301 | MS.gene28404 | 0.813929 | 2.00E-51 | -1.69E-46 |
| MS.gene050400 | MS.gene28404 | 0.80592 | 1.06E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene28404 | 0.801498 | 8.75E-49 | -1.69E-46 |
| MS.gene050650 | MS.gene28404 | 0.802429 | 5.63E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene28404 | 0.807352 | 5.27E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene28404 | 0.820951 | 5.23E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene28404 | 0.851559 | 8.20E-61 | -1.69E-46 |
| MS.gene051582 | MS.gene28404 | 0.840397 | 8.91E-58 | -1.69E-46 |
| MS.gene05455 | MS.gene28404 | 0.802585 | 5.23E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene28404 | 0.804239 | 2.38E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene28404 | 0.802343 | 5.87E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene28404 | 0.802228 | 6.20E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene28404 | 0.823679 | 1.22E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene28404 | 0.835833 | 1.33E-56 | -1.69E-46 |
| MS.gene060403 | MS.gene28404 | 0.800123 | 1.67E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28404.t1 | MTR_8g093330 | 96.124 | 258 | 7 | 1 | 1 | 258 | 67 | 321 | 0.0 | 505 |
| MS.gene28404.t1 | MTR_1g061600 | 52.893 | 242 | 109 | 2 | 12 | 250 | 269 | 508 | 5.11e-84 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28404.t1 | AT3G18680 | 87.597 | 258 | 30 | 1 | 3 | 258 | 81 | 338 | 6.89e-166 | 462 |
| MS.gene28404.t1 | AT3G18680 | 78.397 | 287 | 27 | 2 | 7 | 258 | 85 | 371 | 6.42e-159 | 446 |
| MS.gene28404.t1 | AT3G10030 | 51.667 | 240 | 111 | 2 | 11 | 247 | 297 | 534 | 1.07e-78 | 247 |
| MS.gene28404.t1 | AT3G10030 | 49.767 | 215 | 103 | 2 | 11 | 222 | 297 | 509 | 4.69e-67 | 216 |
Find 67 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAAACCCTTCTCCATTT+TGG | 0.146176 | 4.4:-9010190 | None:intergenic |
| GCCAACTCTCTCACCTTTAA+TGG | 0.225362 | 4.4:-9012768 | None:intergenic |
| GAGAGAGTTGGCACTTTGAT+TGG | 0.297652 | 4.4:+9012779 | MS.gene28404:CDS |
| CGCTCATCCGCTGATTATAT+TGG | 0.327877 | 4.4:+9011610 | MS.gene28404:CDS |
| ATGAATCTAGTAAGCCAAAA+TGG | 0.334137 | 4.4:+9010176 | MS.gene28404:CDS |
| AACATAGAGAAGGCCATTAA+AGG | 0.337991 | 4.4:+9012755 | MS.gene28404:CDS |
| TTCCGTGGAGCCTCGTGGGC+TGG | 0.355160 | 4.4:+9011571 | MS.gene28404:CDS |
| TGTCAAGAAAATAATATTCC+TGG | 0.362510 | 4.4:+9012582 | MS.gene28404:CDS |
| CGCGCTTGAGGGTTACGCTT+TGG | 0.368748 | 4.4:-9012483 | None:intergenic |
| AGAGAGTTGGCACTTTGATT+GGG | 0.369637 | 4.4:+9012780 | MS.gene28404:CDS |
| CAGAAGGGCTGTGAGGCATT+TGG | 0.389622 | 4.4:+9012115 | MS.gene28404:CDS |
| CTCAAAGCTACAAATGTTGA+TGG | 0.395632 | 4.4:+9012444 | MS.gene28404:CDS |
| TCTTGATACACTAACCTATC+AGG | 0.400311 | 4.4:+9012509 | MS.gene28404:CDS |
| AGGTTGCACTAGTTGTTGGT+GGG | 0.406958 | 4.4:+9011539 | MS.gene28404:intron |
| ACAGCCCTTCTGCGTATATA+CGG | 0.417983 | 4.4:-9012104 | None:intergenic |
| AATGCAGTTTGTACTCTAGT+TGG | 0.432080 | 4.4:-9012059 | None:intergenic |
| GCTCATCCGCTGATTATATT+GGG | 0.442411 | 4.4:+9011611 | MS.gene28404:CDS |
| TGATTTATCGTGTAGGATGC+TGG | 0.449284 | 4.4:+9011983 | MS.gene28404:intron |
| CAGGTTGCACTAGTTGTTGG+TGG | 0.453785 | 4.4:+9011538 | MS.gene28404:intron |
| TTTCAGGTTGCACTAGTTGT+TGG | 0.459501 | 4.4:+9011535 | MS.gene28404:intron |
| ATGGCCTTCTCTATGTTACC+TGG | 0.476740 | 4.4:-9012749 | None:intergenic |
| GTTAGCGGAGAAGCACTTGC+TGG | 0.485759 | 4.4:+9010217 | MS.gene28404:CDS |
| GGTTGCACTAGTTGTTGGTG+GGG | 0.491388 | 4.4:+9011540 | MS.gene28404:intron |
| TCATTCATTGACAGTGCAAA+CGG | 0.494942 | 4.4:-9010157 | None:intergenic |
| GACACAAAGTTATGGCAGTA+AGG | 0.512526 | 4.4:-9012563 | None:intergenic |
| GCTGTGAGGCATTTGGAGAA+AGG | 0.516252 | 4.4:+9012122 | MS.gene28404:CDS |
| TATCAAGAAGCCGCGCTTGA+GGG | 0.517581 | 4.4:-9012494 | None:intergenic |
| AGCTCAGAATATTGACCCTA+AGG | 0.522546 | 4.4:+9010246 | MS.gene28404:CDS |
| CATCTTCCGTGGAGCCTCGT+GGG | 0.524475 | 4.4:+9011567 | MS.gene28404:CDS |
| TATGTCCATTGCGAGGGAAG+TGG | 0.526722 | 4.4:+9011165 | MS.gene28404:CDS |
| TGAGGCATTTGGAGAAAGGA+AGG | 0.528380 | 4.4:+9012126 | MS.gene28404:CDS |
| CAAGCAACAATGGAGAGTAT+TGG | 0.530508 | 4.4:+9012032 | MS.gene28404:CDS |
| GTTGCACTAGTTGTTGGTGG+GGG | 0.534947 | 4.4:+9011541 | MS.gene28404:CDS |
| GCCTCGTGGGCTGGAAGTAG+TGG | 0.535611 | 4.4:+9011580 | MS.gene28404:CDS |
| CTAGTAAGCCAAAATGGAGA+AGG | 0.541861 | 4.4:+9010182 | MS.gene28404:CDS |
| AACAAAAGATCTGTCAGTGA+TGG | 0.552161 | 4.4:+9012539 | MS.gene28404:CDS |
| AGCTGCCACTTCCCTCGCAA+TGG | 0.553085 | 4.4:-9011170 | None:intergenic |
| AGTCACCTCAATGCCATGGC+GGG | 0.556629 | 4.4:-9011197 | None:intergenic |
| ACATCTTCCGTGGAGCCTCG+TGG | 0.568791 | 4.4:+9011566 | MS.gene28404:CDS |
| TTCCAGCCCACGAGGCTCCA+CGG | 0.573341 | 4.4:-9011573 | None:intergenic |
| TGACAGTGCAAACGGAGACA+TGG | 0.577417 | 4.4:-9010149 | None:intergenic |
| GAGAGTTGGCACTTTGATTG+GGG | 0.578321 | 4.4:+9012781 | MS.gene28404:CDS |
| AACTGCATTTCGCATGTCTG+AGG | 0.580501 | 4.4:+9012073 | MS.gene28404:CDS |
| GCCATTAAAGGTGAGAGAGT+TGG | 0.582841 | 4.4:+9012767 | MS.gene28404:CDS |
| GCAGTGTCTGTGGTAAAGAA+TGG | 0.584543 | 4.4:-9012179 | None:intergenic |
| GTATCAAGAAGCCGCGCTTG+AGG | 0.587429 | 4.4:-9012495 | None:intergenic |
| CAGAACCGTATATACGCAGA+AGG | 0.587562 | 4.4:+9012099 | MS.gene28404:CDS |
| GTGGCAGCTGTAACCCGCCA+TGG | 0.592749 | 4.4:+9011184 | MS.gene28404:CDS |
| TATATTTCTTCAAGCAACAA+TGG | 0.604226 | 4.4:+9012022 | MS.gene28404:CDS |
| AAGTGCTGCGGCAGTGTCTG+TGG | 0.607764 | 4.4:-9012189 | None:intergenic |
| TAGTAAGCCAAAATGGAGAA+GGG | 0.608078 | 4.4:+9010183 | MS.gene28404:CDS |
| CAATATAATCAGCGGATGAG+CGG | 0.613358 | 4.4:-9011609 | None:intergenic |
| GGTAACTATGTCCATTGCGA+GGG | 0.613640 | 4.4:+9011159 | MS.gene28404:intron |
| CAAACCAGGTAACATAGAGA+AGG | 0.618925 | 4.4:+9012745 | MS.gene28404:CDS |
| TGTAACCCGCCATGGCATTG+AGG | 0.619412 | 4.4:+9011192 | MS.gene28404:CDS |
| GTGTAGTCACCTCAATGCCA+TGG | 0.622683 | 4.4:-9011201 | None:intergenic |
| GAGGCATTTGGAGAAAGGAA+GGG | 0.627211 | 4.4:+9012127 | MS.gene28404:CDS |
| TTCTGCACATCTAAGTGCTG+CGG | 0.632064 | 4.4:-9012201 | None:intergenic |
| AGGTAACTATGTCCATTGCG+AGG | 0.645668 | 4.4:+9011158 | MS.gene28404:intron |
| GCACTTTGATTGGGGCAACG+TGG | 0.653598 | 4.4:+9012789 | MS.gene28404:CDS |
| GTCTTCAATCTAAACAAACC+AGG | 0.655408 | 4.4:+9012731 | MS.gene28404:CDS |
| TTATCACCCAATATAATCAG+CGG | 0.667055 | 4.4:-9011617 | None:intergenic |
| ACCACTACTTCCAGCCCACG+AGG | 0.679613 | 4.4:-9011581 | None:intergenic |
| TAGTCACCTCAATGCCATGG+CGG | 0.694102 | 4.4:-9011198 | None:intergenic |
| AGAACCGTATATACGCAGAA+GGG | 0.702130 | 4.4:+9012100 | MS.gene28404:CDS |
| CAAAGCGTAACCCTCAAGCG+CGG | 0.708280 | 4.4:+9012484 | MS.gene28404:CDS |
| ATATACGCAGAAGGGCTGTG+AGG | 0.766075 | 4.4:+9012108 | MS.gene28404:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAATATAAATATAAAAC+TGG | + | chr4.4:9011016-9011035 | MS.gene28404:intron | 10.0% |
| !! | AAAATAAAGATATAAATTGC+AGG | - | chr4.4:9010279-9010298 | None:intergenic | 15.0% |
| !! | AAGTAAATAGCAATAAATAT+CGG | - | chr4.4:9012394-9012413 | None:intergenic | 15.0% |
| !!! | ACATTGTATTAAACATTTTT+AGG | - | chr4.4:9011932-9011951 | None:intergenic | 15.0% |
| !!! | AGACAATTTTTTATTAATAC+AGG | - | chr4.4:9010482-9010501 | None:intergenic | 15.0% |
| !! | AAAACTATAAACTAATGAAC+AGG | - | chr4.4:9012337-9012356 | None:intergenic | 20.0% |
| !! | AAATACAATTACAAAAAAGC+AGG | - | chr4.4:9011964-9011983 | None:intergenic | 20.0% |
| !! | ACTTTGCAATATAATCTTTA+GGG | + | chr4.4:9011364-9011383 | MS.gene28404:intron | 20.0% |
| !! | ATTATAAATAACTGAAAGCT+CGG | - | chr4.4:9010357-9010376 | None:intergenic | 20.0% |
| !! | GCTTTCAGTTATTTATAATA+TGG | + | chr4.4:9010358-9010377 | MS.gene28404:intron | 20.0% |
| !! | TACTTTGCAATATAATCTTT+AGG | + | chr4.4:9011363-9011382 | MS.gene28404:intron | 20.0% |
| !!! | AAACTGGTAATAAACAATTT+TGG | + | chr4.4:9011032-9011051 | MS.gene28404:intron | 20.0% |
| !!! | AAATTGCCAAATTTTTACTT+AGG | + | chr4.4:9011884-9011903 | MS.gene28404:intron | 20.0% |
| !!! | AACTGGTAATAAACAATTTT+GGG | + | chr4.4:9011033-9011052 | MS.gene28404:intron | 20.0% |
| !!! | AAGTTTTGAATGAAGATTAA+AGG | - | chr4.4:9011671-9011690 | None:intergenic | 20.0% |
| !!! | AATTGCCAAATTTTTACTTA+GGG | + | chr4.4:9011885-9011904 | MS.gene28404:intron | 20.0% |
| !!! | AGATTTTGATTTTGTTTTTG+TGG | + | chr4.4:9011125-9011144 | MS.gene28404:intron | 20.0% |
| !!! | GATTTTGATTTTGTTTTTGT+GGG | + | chr4.4:9011126-9011145 | MS.gene28404:intron | 20.0% |
| ! | ACTACAAAAAATAAAACCGA+AGG | - | chr4.4:9011254-9011273 | None:intergenic | 25.0% |
| ! | ATAAAAAGTGAGATGAAATC+TGG | - | chr4.4:9010984-9011003 | None:intergenic | 25.0% |
| ! | ATATGGCAAGATATTTCATT+TGG | - | chr4.4:9011080-9011099 | None:intergenic | 25.0% |
| ! | ATCAGGACAATAAATACAAT+AGG | - | chr4.4:9012677-9012696 | None:intergenic | 25.0% |
| ! | CTTTGCAATATAATCTTTAG+GGG | + | chr4.4:9011365-9011384 | MS.gene28404:intron | 25.0% |
| ! | GAGCAGTATATATACAAATT+TGG | + | chr4.4:9011728-9011747 | MS.gene28404:intron | 25.0% |
| ! | TAAAAAGTGAGATGAAATCT+GGG | - | chr4.4:9010983-9011002 | None:intergenic | 25.0% |
| ! | TACACTTAGACAAAAGTTTA+CGG | - | chr4.4:9011863-9011882 | None:intergenic | 25.0% |
| ! | TATATTTCTTCAAGCAACAA+TGG | + | chr4.4:9012022-9012041 | MS.gene28404:CDS | 25.0% |
| ! | TCTTGGTTAAAAGAGATTAA+GGG | - | chr4.4:9011645-9011664 | None:intergenic | 25.0% |
| ! | TGTCAAGAAAATAATATTCC+TGG | + | chr4.4:9012582-9012601 | MS.gene28404:CDS | 25.0% |
| ! | TTCTTGGTTAAAAGAGATTA+AGG | - | chr4.4:9011646-9011665 | None:intergenic | 25.0% |
| !! | ACAAACTTTTTACTAAATGC+AGG | - | chr4.4:9011783-9011802 | None:intergenic | 25.0% |
| !! | ACAGTTTGGTTTATAATGAT+TGG | + | chr4.4:9011505-9011524 | MS.gene28404:intron | 25.0% |
| !! | ATTGAATCATTTCAAGTCAA+AGG | - | chr4.4:9011468-9011487 | None:intergenic | 25.0% |
| !! | ATTGCCAAATTTTTACTTAG+GGG | + | chr4.4:9011886-9011905 | MS.gene28404:intron | 25.0% |
| !! | ATTTTCTTGACACAAAGTTA+TGG | - | chr4.4:9012574-9012593 | None:intergenic | 25.0% |
| !! | CAGTTTGGTTTATAATGATT+GGG | + | chr4.4:9011506-9011525 | MS.gene28404:intron | 25.0% |
| !! | TTGAATCATTTCAAGTCAAA+GGG | - | chr4.4:9011467-9011486 | None:intergenic | 25.0% |
| !! | TTGTATTTGATTTATCGTGT+AGG | + | chr4.4:9011976-9011995 | MS.gene28404:intron | 25.0% |
| !!! | AATGATTCAATGCTTTTTAC+TGG | + | chr4.4:9011477-9011496 | MS.gene28404:intron | 25.0% |
| !!! | ATGAAGATTAAAGGTATTCT+TGG | - | chr4.4:9011662-9011681 | None:intergenic | 25.0% |
| !!! | ATTTTTTCACTAGTTTCCTT+CGG | + | chr4.4:9011235-9011254 | MS.gene28404:intron | 25.0% |
| !!! | TACTTTCAGCATTAGTTTTT+TGG | + | chr4.4:9010456-9010475 | MS.gene28404:intron | 25.0% |
| !!! | TTTTGTTATTACATCCTGAT+AGG | - | chr4.4:9012526-9012545 | None:intergenic | 25.0% |
| AAAAAGTGAGATGAAATCTG+GGG | - | chr4.4:9010982-9011001 | None:intergenic | 30.0% | |
| ACATTGTTTCAGTATTTGAC+TGG | - | chr4.4:9010415-9010434 | None:intergenic | 30.0% | |
| ATAAACTCCCCAAATAATAC+TGG | - | chr4.4:9011427-9011446 | None:intergenic | 30.0% | |
| ATGAATCTAGTAAGCCAAAA+TGG | + | chr4.4:9010176-9010195 | MS.gene28404:CDS | 30.0% | |
| GATTCCCCTAAGTAAAAATT+TGG | - | chr4.4:9011893-9011912 | None:intergenic | 30.0% | |
| TGATTGAAATCAACTCAGAT+TGG | + | chr4.4:9012650-9012669 | MS.gene28404:intron | 30.0% | |
| TGTAGTCACCAGTATTATTT+GGG | + | chr4.4:9011416-9011435 | MS.gene28404:intron | 30.0% | |
| TTATCACCCAATATAATCAG+CGG | - | chr4.4:9011620-9011639 | None:intergenic | 30.0% | |
| ! | ATTCTTTTCAGTTAATGCAG+AGG | + | chr4.4:9012416-9012435 | MS.gene28404:intron | 30.0% |
| !! | ACTTTGCTCTAGCTTTAAAT+AGG | + | chr4.4:9010650-9010669 | MS.gene28404:intron | 30.0% |
| !! | CTTTGCTCTAGCTTTAAATA+GGG | + | chr4.4:9010651-9010670 | MS.gene28404:intron | 30.0% |
| !! | TAAACATTTTTAGGCAACAG+AGG | - | chr4.4:9011923-9011942 | None:intergenic | 30.0% |
| !!! | TGATTTTGTTTTTGTGGGTT+TGG | + | chr4.4:9011131-9011150 | MS.gene28404:intron | 30.0% |
| !!! | TTTTACTGGTTTTCACAGTT+TGG | + | chr4.4:9011491-9011510 | MS.gene28404:intron | 30.0% |
| AAAAGTGAGATGAAATCTGG+GGG | - | chr4.4:9010981-9011000 | None:intergenic | 35.0% | |
| AACAAAAGATCTGTCAGTGA+TGG | + | chr4.4:9012539-9012558 | MS.gene28404:CDS | 35.0% | |
| AACATAGAGAAGGCCATTAA+AGG | + | chr4.4:9012755-9012774 | MS.gene28404:CDS | 35.0% | |
| AAGTCAAGAGCAACATCATA+TGG | - | chr4.4:9011097-9011116 | None:intergenic | 35.0% | |
| AATGCAGTTTGTACTCTAGT+TGG | - | chr4.4:9012062-9012081 | None:intergenic | 35.0% | |
| ACAGATTACAAAACACGTAC+CGG | - | chr4.4:9011399-9011418 | None:intergenic | 35.0% | |
| ACCATGCATTCAATTAACCA+AGG | - | chr4.4:9011309-9011328 | None:intergenic | 35.0% | |
| ACGAAGTAGCCAACAAAAAT+TGG | - | chr4.4:9010625-9010644 | None:intergenic | 35.0% | |
| CATGCATTCAATTAACCAAG+GGG | - | chr4.4:9011307-9011326 | None:intergenic | 35.0% | |
| CATTCTCGCATCTTCATAAA+GGG | + | chr4.4:9012289-9012308 | MS.gene28404:intron | 35.0% | |
| CCATGCATTCAATTAACCAA+GGG | - | chr4.4:9011308-9011327 | None:intergenic | 35.0% | |
| CTCAAAGCTACAAATGTTGA+TGG | + | chr4.4:9012444-9012463 | MS.gene28404:CDS | 35.0% | |
| CTGTAGTCACCAGTATTATT+TGG | + | chr4.4:9011415-9011434 | MS.gene28404:intron | 35.0% | |
| GTAGTCACCAGTATTATTTG+GGG | + | chr4.4:9011417-9011436 | MS.gene28404:intron | 35.0% | |
| GTCTTCAATCTAAACAAACC+AGG | + | chr4.4:9012731-9012750 | MS.gene28404:CDS | 35.0% | |
| TACTAAATGCAGGAAATTGC+AGG | - | chr4.4:9011773-9011792 | None:intergenic | 35.0% | |
| TAGTAAGCCAAAATGGAGAA+GGG | + | chr4.4:9010183-9010202 | MS.gene28404:CDS | 35.0% | |
| TCATTCATTGACAGTGCAAA+CGG | - | chr4.4:9010160-9010179 | None:intergenic | 35.0% | |
| TCATTCTCGCATCTTCATAA+AGG | + | chr4.4:9012288-9012307 | MS.gene28404:intron | 35.0% | |
| TCTTGATACACTAACCTATC+AGG | + | chr4.4:9012509-9012528 | MS.gene28404:CDS | 35.0% | |
| TTTAGGCAACAGAGGATATT+TGG | - | chr4.4:9011915-9011934 | None:intergenic | 35.0% | |
| ! | CATGGTTTGAAGTAGATTTG+GGG | + | chr4.4:9011323-9011342 | MS.gene28404:intron | 35.0% |
| ! | GCATGGTTTGAAGTAGATTT+GGG | + | chr4.4:9011322-9011341 | MS.gene28404:intron | 35.0% |
| ! | TGCATGGTTTGAAGTAGATT+TGG | + | chr4.4:9011321-9011340 | MS.gene28404:intron | 35.0% |
| !! | AGTTAATTTTTCAGCCCACA+TGG | + | chr4.4:9010519-9010538 | MS.gene28404:intron | 35.0% |
| !! | ATAGAAGTGCCAACAGAATT+TGG | + | chr4.4:9010810-9010829 | MS.gene28404:intron | 35.0% |
| !! | GTTAATTTTTCAGCCCACAT+GGG | + | chr4.4:9010520-9010539 | MS.gene28404:intron | 35.0% |
| AAGGACAGATACAGTTCATC+AGG | - | chr4.4:9012694-9012713 | None:intergenic | 40.0% | |
| ACCAATCCTACAGCTACTTA+GGG | - | chr4.4:9010677-9010696 | None:intergenic | 40.0% | |
| ACTAGTGCAACCTGAAACAT+CGG | - | chr4.4:9011532-9011551 | None:intergenic | 40.0% | |
| AGAACCGTATATACGCAGAA+GGG | + | chr4.4:9012100-9012119 | MS.gene28404:CDS | 40.0% | |
| AGAGAGTTGGCACTTTGATT+GGG | + | chr4.4:9012780-9012799 | MS.gene28404:CDS | 40.0% | |
| AGCCAACAAAAATTGGCATC+AGG | - | chr4.4:9010618-9010637 | None:intergenic | 40.0% | |
| AGCTCAGAATATTGACCCTA+AGG | + | chr4.4:9010246-9010265 | MS.gene28404:CDS | 40.0% | |
| AGTTGACACGTAAACCACAA+GGG | + | chr4.4:9010847-9010866 | MS.gene28404:intron | 40.0% | |
| CAAACCAGGTAACATAGAGA+AGG | + | chr4.4:9012745-9012764 | MS.gene28404:CDS | 40.0% | |
| CAACAAAAATTGGCATCAGG+AGG | - | chr4.4:9010615-9010634 | None:intergenic | 40.0% | |
| CAATATAATCAGCGGATGAG+CGG | - | chr4.4:9011612-9011631 | None:intergenic | 40.0% | |
| CCAACTGAACCAAATTCTGT+TGG | - | chr4.4:9010822-9010841 | None:intergenic | 40.0% | |
| CCCTTGGTTAATTGAATGCA+TGG | + | chr4.4:9011305-9011324 | MS.gene28404:intron | 40.0% | |
| CTAGTAAGCCAAAATGGAGA+AGG | + | chr4.4:9010182-9010201 | MS.gene28404:CDS | 40.0% | |
| GACACAAAGTTATGGCAGTA+AGG | - | chr4.4:9012566-9012585 | None:intergenic | 40.0% | |
| GTTTGTCTGCTTTACTTACC+AGG | - | chr4.4:9012603-9012622 | None:intergenic | 40.0% | |
| TCAATACAGTCTCCAAGTCT+CGG | - | chr4.4:9010948-9010967 | None:intergenic | 40.0% | |
| TGAAGACTACAACTGTTCCA+AGG | - | chr4.4:9012718-9012737 | None:intergenic | 40.0% | |
| TGATTTATCGTGTAGGATGC+TGG | + | chr4.4:9011983-9012002 | MS.gene28404:intron | 40.0% | |
| ! | AGAATTTGGTTCAGTTGGTC+AGG | + | chr4.4:9010824-9010843 | MS.gene28404:intron | 40.0% |
| ! | AGCAAAACCCTTCTCCATTT+TGG | - | chr4.4:9010193-9010212 | None:intergenic | 40.0% |
| ! | AGGGTTTTGCTCAAAGTTAG+CGG | + | chr4.4:9010202-9010221 | MS.gene28404:CDS | 40.0% |
| ! | CAAGCAACAATGGAGAGTAT+TGG | + | chr4.4:9012032-9012051 | MS.gene28404:CDS | 40.0% |
| ! | CCAACAGAATTTGGTTCAGT+TGG | + | chr4.4:9010819-9010838 | MS.gene28404:intron | 40.0% |
| ! | CTCCTGATGCCAATTTTTGT+TGG | + | chr4.4:9010613-9010632 | MS.gene28404:intron | 40.0% |
| ! | GCTCATCCGCTGATTATATT+GGG | + | chr4.4:9011611-9011630 | MS.gene28404:CDS | 40.0% |
| ! | GGGGTGATTTGTAAATACGT+AGG | + | chr4.4:9010912-9010931 | MS.gene28404:intron | 40.0% |
| ! | TGGAGACTGTATTGACCTTT+GGG | + | chr4.4:9010953-9010972 | MS.gene28404:intron | 40.0% |
| ! | TTGGAGACTGTATTGACCTT+TGG | + | chr4.4:9010952-9010971 | MS.gene28404:intron | 40.0% |
| !! | TTTCAGGTTGCACTAGTTGT+TGG | + | chr4.4:9011535-9011554 | MS.gene28404:intron | 40.0% |
| AAAACACGGTATCCGACCTA+GGG | - | chr4.4:9010718-9010737 | None:intergenic | 45.0% | |
| AACACCAGACTAACCCATGT+GGG | - | chr4.4:9010536-9010555 | None:intergenic | 45.0% | |
| AACTGCATTTCGCATGTCTG+AGG | + | chr4.4:9012073-9012092 | MS.gene28404:CDS | 45.0% | |
| AACTGTATCTGTCCTTGCCT+TGG | + | chr4.4:9012698-9012717 | MS.gene28404:intron | 45.0% | |
| AATGATTGGGCCGATGTTTC+AGG | + | chr4.4:9011519-9011538 | MS.gene28404:intron | 45.0% | |
| AATTGCAGGTAGACGACCTT+AGG | - | chr4.4:9010265-9010284 | None:intergenic | 45.0% | |
| ACAGCCCTTCTGCGTATATA+CGG | - | chr4.4:9012107-9012126 | None:intergenic | 45.0% | |
| ACTACAACTGTTCCAAGGCA+AGG | - | chr4.4:9012713-9012732 | None:intergenic | 45.0% | |
| AGGTAACTATGTCCATTGCG+AGG | + | chr4.4:9011158-9011177 | MS.gene28404:intron | 45.0% | |
| AGGTTGCACTAGTTGTTGGT+GGG | + | chr4.4:9011539-9011558 | MS.gene28404:intron | 45.0% | |
| AGTTGAATTTCGCACCCTTG+TGG | - | chr4.4:9010864-9010883 | None:intergenic | 45.0% | |
| ATGGCCTTCTCTATGTTACC+TGG | - | chr4.4:9012752-9012771 | None:intergenic | 45.0% | |
| ATTGCAGGTAGACGACCTTA+GGG | - | chr4.4:9010264-9010283 | None:intergenic | 45.0% | |
| CAAAACGTTGGGTGTGTATG+TGG | + | chr4.4:9011812-9011831 | MS.gene28404:intron | 45.0% | |
| CAGAACCGTATATACGCAGA+AGG | + | chr4.4:9012099-9012118 | MS.gene28404:CDS | 45.0% | |
| CTTGAACTTGAGACCTTGAG+AGG | - | chr4.4:9010585-9010604 | None:intergenic | 45.0% | |
| GACCAATCCTACAGCTACTT+AGG | - | chr4.4:9010678-9010697 | None:intergenic | 45.0% | |
| GAGAGAGTTGGCACTTTGAT+TGG | + | chr4.4:9012779-9012798 | MS.gene28404:CDS | 45.0% | |
| GAGAGTTGGCACTTTGATTG+GGG | + | chr4.4:9012781-9012800 | MS.gene28404:CDS | 45.0% | |
| GAGTTGACACGTAAACCACA+AGG | + | chr4.4:9010846-9010865 | MS.gene28404:intron | 45.0% | |
| GCAGTGTCTGTGGTAAAGAA+TGG | - | chr4.4:9012182-9012201 | None:intergenic | 45.0% | |
| GCCAACTCTCTCACCTTTAA+TGG | - | chr4.4:9012771-9012790 | None:intergenic | 45.0% | |
| GCCATTAAAGGTGAGAGAGT+TGG | + | chr4.4:9012767-9012786 | MS.gene28404:CDS | 45.0% | |
| GGTAACTATGTCCATTGCGA+GGG | + | chr4.4:9011159-9011178 | MS.gene28404:intron | 45.0% | |
| GTCACGAGAGACAAAACGTT+GGG | + | chr4.4:9011801-9011820 | MS.gene28404:intron | 45.0% | |
| TAAAACACGGTATCCGACCT+AGG | - | chr4.4:9010719-9010738 | None:intergenic | 45.0% | |
| TGTCACGAGAGACAAAACGT+TGG | + | chr4.4:9011800-9011819 | MS.gene28404:intron | 45.0% | |
| TTACAAATCACCCCCCAACA+AGG | - | chr4.4:9010906-9010925 | None:intergenic | 45.0% | |
| ! | AAGGGTGCGAAATTCAACTC+CGG | + | chr4.4:9010865-9010884 | MS.gene28404:intron | 45.0% |
| ! | CGCTCATCCGCTGATTATAT+TGG | + | chr4.4:9011610-9011629 | MS.gene28404:CDS | 45.0% |
| ! | GAGGCATTTGGAGAAAGGAA+GGG | + | chr4.4:9012127-9012146 | MS.gene28404:CDS | 45.0% |
| ! | GTTTTTGTGGGTTTGGATGC+AGG | + | chr4.4:9011138-9011157 | MS.gene28404:intron | 45.0% |
| ! | TCAAGTTGTTTGAGACCCCT+TGG | + | chr4.4:9011289-9011308 | MS.gene28404:intron | 45.0% |
| ! | TGAGGCATTTGGAGAAAGGA+AGG | + | chr4.4:9012126-9012145 | MS.gene28404:CDS | 45.0% |
| ! | TTCTGCACATCTAAGTGCTG+CGG | - | chr4.4:9012204-9012223 | None:intergenic | 45.0% |
| !! | TAGTCTGGTGTTGTAGCCTT+GGG | + | chr4.4:9010544-9010563 | MS.gene28404:intron | 45.0% |
| !! | TTAGTCTGGTGTTGTAGCCT+TGG | + | chr4.4:9010543-9010562 | MS.gene28404:intron | 45.0% |
| !!! | AGGGTTGTCATTTTTGCTGC+TGG | + | chr4.4:9012146-9012165 | MS.gene28404:CDS | 45.0% |
| !!! | TTTTTTATATTTTTAAAACA+CGG | - | chr4.4:9010732-9010751 | None:intergenic | 5.0% |
| ATAGGGCCCTAAGTAGCTGT+AGG | + | chr4.4:9010668-9010687 | MS.gene28404:intron | 50.0% | |
| ATATACGCAGAAGGGCTGTG+AGG | + | chr4.4:9012108-9012127 | MS.gene28404:CDS | 50.0% | |
| CAACACCAGACTAACCCATG+TGG | - | chr4.4:9010537-9010556 | None:intergenic | 50.0% | |
| CAGGTTGCACTAGTTGTTGG+TGG | + | chr4.4:9011538-9011557 | MS.gene28404:intron | 50.0% | |
| CGAAATTCAACTCCGGCTGT+TGG | + | chr4.4:9010872-9010891 | MS.gene28404:intron | 50.0% | |
| CTTGGATTGTGCTCCTCTCA+AGG | + | chr4.4:9010569-9010588 | MS.gene28404:intron | 50.0% | |
| GCCCTAAGTAGCTGTAGGAT+TGG | + | chr4.4:9010673-9010692 | MS.gene28404:intron | 50.0% | |
| GGTTGCACTAGTTGTTGGTG+GGG | + | chr4.4:9011540-9011559 | MS.gene28404:intron | 50.0% | |
| GTGTAGTCACCTCAATGCCA+TGG | - | chr4.4:9011204-9011223 | None:intergenic | 50.0% | |
| GTTGGCATGAGGACCTTGTT+GGG | + | chr4.4:9010890-9010909 | MS.gene28404:intron | 50.0% | |
| TAGTCACCTCAATGCCATGG+CGG | - | chr4.4:9011201-9011220 | None:intergenic | 50.0% | |
| TATCAAGAAGCCGCGCTTGA+GGG | - | chr4.4:9012497-9012516 | None:intergenic | 50.0% | |
| TATGTCCATTGCGAGGGAAG+TGG | + | chr4.4:9011165-9011184 | MS.gene28404:CDS | 50.0% | |
| TGAAATCTGGGGGATCCCAA+AGG | - | chr4.4:9010971-9010990 | None:intergenic | 50.0% | |
| TGTTGGCATGAGGACCTTGT+TGG | + | chr4.4:9010889-9010908 | MS.gene28404:intron | 50.0% | |
| TTGGCATGAGGACCTTGTTG+GGG | + | chr4.4:9010891-9010910 | MS.gene28404:intron | 50.0% | |
| ! | ATCTTTAGGGGAAGCTCTGC+CGG | + | chr4.4:9011377-9011396 | MS.gene28404:intron | 50.0% |
| ! | CTTGAGAGGAGCACAATCCA+AGG | - | chr4.4:9010571-9010590 | None:intergenic | 50.0% |
| ! | GCTGTGAGGCATTTGGAGAA+AGG | + | chr4.4:9012122-9012141 | MS.gene28404:CDS | 50.0% |
| ! | GTTGCACTAGTTGTTGGTGG+GGG | + | chr4.4:9011541-9011560 | MS.gene28404:CDS | 50.0% |
| !! | ATTGGTCCTCCCGGATTAGT+CGG | + | chr4.4:9010691-9010710 | MS.gene28404:intron | 50.0% |
| !!! | GTCATTTTTGCTGCTGGCAC+TGG | + | chr4.4:9012152-9012171 | MS.gene28404:CDS | 50.0% |
| AAGGTCCTCATGCCAACAGC+CGG | - | chr4.4:9010887-9010906 | None:intergenic | 55.0% | |
| ACCTAGGGACCGACTAATCC+GGG | - | chr4.4:9010703-9010722 | None:intergenic | 55.0% | |
| AGTCACCTCAATGCCATGGC+GGG | - | chr4.4:9011200-9011219 | None:intergenic | 55.0% | |
| CAAAGCGTAACCCTCAAGCG+CGG | + | chr4.4:9012484-9012503 | MS.gene28404:CDS | 55.0% | |
| GACCTAGGGACCGACTAATC+CGG | - | chr4.4:9010704-9010723 | None:intergenic | 55.0% | |
| GAGCACAATCCAAGGTCCCA+AGG | - | chr4.4:9010563-9010582 | None:intergenic | 55.0% | |
| GCACTTTGATTGGGGCAACG+TGG | + | chr4.4:9012789-9012808 | MS.gene28404:CDS | 55.0% | |
| GGTTAGTGCTCTCCGAGACT+TGG | + | chr4.4:9010933-9010952 | MS.gene28404:intron | 55.0% | |
| GTATCAAGAAGCCGCGCTTG+AGG | - | chr4.4:9012498-9012517 | None:intergenic | 55.0% | |
| TGGCATGAGGACCTTGTTGG+GGG | + | chr4.4:9010892-9010911 | MS.gene28404:intron | 55.0% | |
| TGTAACCCGCCATGGCATTG+AGG | + | chr4.4:9011192-9011211 | MS.gene28404:CDS | 55.0% | |
| ! | CAGAAGGGCTGTGAGGCATT+TGG | + | chr4.4:9012115-9012134 | MS.gene28404:CDS | 55.0% |
| ! | GTGTTGTAGCCTTGGGACCT+TGG | + | chr4.4:9010551-9010570 | MS.gene28404:intron | 55.0% |
| !! | AGCTGTAGGATTGGTCCTCC+CGG | + | chr4.4:9010682-9010701 | MS.gene28404:intron | 55.0% |
| !! | GGATTAGTCGGTCCCTAGGT+CGG | + | chr4.4:9010703-9010722 | MS.gene28404:intron | 55.0% |
| !! | GTTAGCGGAGAAGCACTTGC+TGG | + | chr4.4:9010217-9010236 | MS.gene28404:CDS | 55.0% |
| !! | TCAGCCCACATGGGTTAGTC+TGG | + | chr4.4:9010529-9010548 | MS.gene28404:intron | 55.0% |
| ACATCTTCCGTGGAGCCTCG+TGG | + | chr4.4:9011566-9011585 | MS.gene28404:CDS | 60.0% | |
| ACCACTACTTCCAGCCCACG+AGG | - | chr4.4:9011584-9011603 | None:intergenic | 60.0% | |
| CAACTCCGGCTGTTGGCATG+AGG | + | chr4.4:9010879-9010898 | MS.gene28404:intron | 60.0% | |
| CATCTTCCGTGGAGCCTCGT+GGG | + | chr4.4:9011567-9011586 | MS.gene28404:CDS | 60.0% | |
| CGCGCTTGAGGGTTACGCTT+TGG | - | chr4.4:9012486-9012505 | None:intergenic | 60.0% | |
| GGCATGAGGACCTTGTTGGG+GGG | + | chr4.4:9010893-9010912 | MS.gene28404:intron | 60.0% | |
| GGTGGGGGTAACATCTTCCG+TGG | + | chr4.4:9011556-9011575 | MS.gene28404:CDS | 60.0% | |
| TAGGGACCGACTAATCCGGG+AGG | - | chr4.4:9010700-9010719 | None:intergenic | 60.0% | |
| ! | AAGTGCTGCGGCAGTGTCTG+TGG | - | chr4.4:9012192-9012211 | None:intergenic | 60.0% |
| ! | AGCTGCCACTTCCCTCGCAA+TGG | - | chr4.4:9011173-9011192 | None:intergenic | 60.0% |
| !! | TCCCGGATTAGTCGGTCCCT+AGG | + | chr4.4:9010699-9010718 | MS.gene28404:intron | 60.0% |
| GTGGCAGCTGTAACCCGCCA+TGG | + | chr4.4:9011184-9011203 | MS.gene28404:CDS | 65.0% | |
| TTCCAGCCCACGAGGCTCCA+CGG | - | chr4.4:9011576-9011595 | None:intergenic | 65.0% | |
| !! | GCCTCGTGGGCTGGAAGTAG+TGG | + | chr4.4:9011580-9011599 | MS.gene28404:CDS | 65.0% |
| TTCCGTGGAGCCTCGTGGGC+TGG | + | chr4.4:9011571-9011590 | MS.gene28404:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 9010151 | 9012835 | 9010151 | ID=MS.gene28404 |
| chr4.4 | mRNA | 9010151 | 9012835 | 9010151 | ID=MS.gene28404.t1;Parent=MS.gene28404 |
| chr4.4 | exon | 9010151 | 9010267 | 9010151 | ID=MS.gene28404.t1.exon1;Parent=MS.gene28404.t1 |
| chr4.4 | CDS | 9010151 | 9010267 | 9010151 | ID=cds.MS.gene28404.t1;Parent=MS.gene28404.t1 |
| chr4.4 | exon | 9011160 | 9011213 | 9011160 | ID=MS.gene28404.t1.exon2;Parent=MS.gene28404.t1 |
| chr4.4 | CDS | 9011160 | 9011213 | 9011160 | ID=cds.MS.gene28404.t1;Parent=MS.gene28404.t1 |
| chr4.4 | exon | 9011541 | 9011632 | 9011541 | ID=MS.gene28404.t1.exon3;Parent=MS.gene28404.t1 |
| chr4.4 | CDS | 9011541 | 9011632 | 9011541 | ID=cds.MS.gene28404.t1;Parent=MS.gene28404.t1 |
| chr4.4 | exon | 9011998 | 9012224 | 9011998 | ID=MS.gene28404.t1.exon4;Parent=MS.gene28404.t1 |
| chr4.4 | CDS | 9011998 | 9012224 | 9011998 | ID=cds.MS.gene28404.t1;Parent=MS.gene28404.t1 |
| chr4.4 | exon | 9012427 | 9012603 | 9012427 | ID=MS.gene28404.t1.exon5;Parent=MS.gene28404.t1 |
| chr4.4 | CDS | 9012427 | 9012603 | 9012427 | ID=cds.MS.gene28404.t1;Parent=MS.gene28404.t1 |
| chr4.4 | exon | 9012726 | 9012835 | 9012726 | ID=MS.gene28404.t1.exon6;Parent=MS.gene28404.t1 |
| chr4.4 | CDS | 9012726 | 9012835 | 9012726 | ID=cds.MS.gene28404.t1;Parent=MS.gene28404.t1 |
| Gene Sequence |
| Protein sequence |
