Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050209.t1 | XP_013469378.1 | 96.7 | 305 | 10 | 0 | 1 | 305 | 1 | 305 | 9.60E-168 | 599.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050209.t1 | Q8LBZ4 | 59.0 | 139 | 55 | 1 | 164 | 302 | 167 | 303 | 7.5e-44 | 179.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050209.t1 | A0A072VP60 | 96.7 | 305 | 10 | 0 | 1 | 305 | 1 | 305 | 6.9e-168 | 599.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050209 | MS.gene059717 | 0.805371 | 1.38E-49 | -1.69E-46 |
| MS.gene050209 | MS.gene060717 | 0.802551 | 5.32E-49 | -1.69E-46 |
| MS.gene050209 | MS.gene06941 | 0.800468 | 1.42E-48 | -1.69E-46 |
| MS.gene050209 | MS.gene36260 | 0.844034 | 9.70E-59 | -1.69E-46 |
| MS.gene050209 | MS.gene60555 | 0.911269 | 7.36E-83 | -1.69E-46 |
| MS.gene050209 | MS.gene61544 | 0.836393 | 9.61E-57 | -1.69E-46 |
| MS.gene050209 | MS.gene75548 | 0.801434 | 9.02E-49 | -1.69E-46 |
| MS.gene050209 | MS.gene86339 | 0.835517 | 1.60E-56 | -1.69E-46 |
| MS.gene050209 | MS.gene89074 | 0.837068 | 6.46E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050209.t1 | MTR_1g492730 | 96.721 | 305 | 10 | 0 | 1 | 305 | 1 | 305 | 0.0 | 615 |
| MS.gene050209.t1 | MTR_1g492730 | 95.238 | 210 | 10 | 0 | 1 | 210 | 1 | 210 | 1.20e-142 | 401 |
| MS.gene050209.t1 | MTR_1g052405 | 46.890 | 209 | 89 | 4 | 102 | 304 | 135 | 327 | 6.68e-59 | 192 |
| MS.gene050209.t1 | MTR_3g085620 | 51.825 | 137 | 64 | 1 | 167 | 303 | 40 | 174 | 5.83e-49 | 161 |
| MS.gene050209.t1 | MTR_1g052380 | 47.945 | 146 | 73 | 2 | 159 | 303 | 50 | 193 | 4.11e-43 | 147 |
| MS.gene050209.t1 | MTR_4g014750 | 35.294 | 153 | 83 | 5 | 165 | 302 | 77 | 228 | 7.59e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050209.t1 | AT3G57810 | 58.571 | 140 | 56 | 1 | 163 | 302 | 166 | 303 | 1.11e-55 | 183 |
| MS.gene050209.t1 | AT3G57810 | 58.571 | 140 | 56 | 1 | 163 | 302 | 166 | 303 | 1.11e-55 | 183 |
| MS.gene050209.t1 | AT3G57810 | 58.571 | 140 | 56 | 1 | 163 | 302 | 166 | 303 | 1.11e-55 | 183 |
| MS.gene050209.t1 | AT2G38025 | 32.075 | 159 | 86 | 4 | 165 | 302 | 53 | 210 | 4.45e-15 | 73.2 |
| MS.gene050209.t1 | AT2G38025 | 32.075 | 159 | 86 | 4 | 165 | 302 | 76 | 233 | 7.08e-15 | 73.2 |
| MS.gene050209.t1 | AT3G57810 | 39.362 | 94 | 52 | 2 | 123 | 211 | 121 | 214 | 2.24e-14 | 71.2 |
Find 97 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAACTTGCCGACGAATTA+AGG | 0.213414 | 1.1:+67075974 | MS.gene050209:CDS |
| CTCCACCGCCGGTTGAGATT+TGG | 0.298384 | 1.1:-67074906 | None:intergenic |
| AACATAAGTCTGTTGAATTC+TGG | 0.316175 | 1.1:-67076288 | None:intergenic |
| TGGAATGGTGGCGGCGGGCG+GGG | 0.325826 | 1.1:-67074867 | None:intergenic |
| TGAGATTTGGAGGTGGTTGC+AGG | 0.327466 | 1.1:-67074893 | None:intergenic |
| GGTGGAATGGTGGCGGCGGG+CGG | 0.330689 | 1.1:-67074869 | None:intergenic |
| AATTCAACAGACTTATGTTT+GGG | 0.341402 | 1.1:+67076292 | MS.gene050209:CDS |
| GCCGACTCCAGCTGTGTTCC+CGG | 0.347465 | 1.1:+67075158 | MS.gene050209:CDS |
| TCTCTCATGAAGACATATAT+TGG | 0.349253 | 1.1:-67076778 | None:intergenic |
| GTGGAATGGTGGCGGCGGGC+GGG | 0.352247 | 1.1:-67074868 | None:intergenic |
| GCGCCACTCGCTCTCGTCCT+TGG | 0.358149 | 1.1:+67074776 | MS.gene050209:CDS |
| AGATGCAAGCTCCATGGATT+TGG | 0.364917 | 1.1:+67076798 | MS.gene050209:CDS |
| AGGAGAGCCTGAGCTATTAA+TGG | 0.369529 | 1.1:+67076316 | MS.gene050209:CDS |
| CTGCGCTTGCCTTGCGCCGC+CGG | 0.373717 | 1.1:+67075104 | MS.gene050209:CDS |
| GAAAGGCGTGGTGGTGGTGG+TGG | 0.384833 | 1.1:-67074810 | None:intergenic |
| ACATGGTCACTACGAACTAT+TGG | 0.387672 | 1.1:+67076891 | MS.gene050209:CDS |
| TGGAGTCGGCGGCGCCGCCT+CGG | 0.392242 | 1.1:-67075145 | None:intergenic |
| GAATTCAACAGACTTATGTT+TGG | 0.396680 | 1.1:+67076291 | MS.gene050209:CDS |
| TCGATGAAATAGCACATTGA+TGG | 0.414542 | 1.1:-67076869 | None:intergenic |
| GGCGGTGGAATGGTGGCGGC+GGG | 0.418826 | 1.1:-67074872 | None:intergenic |
| ATCTTTCACTTCACGTCCCT+CGG | 0.423234 | 1.1:-67075190 | None:intergenic |
| GAAGCATCACACCGCTGCTT+CGG | 0.424353 | 1.1:-67074975 | None:intergenic |
| TCCCTCTGTCGACTTTCATT+AGG | 0.424371 | 1.1:-67075955 | None:intergenic |
| TTGGAGGTGGTTGCAGGCGG+TGG | 0.429035 | 1.1:-67074887 | None:intergenic |
| ATTACTCCTTGCGGCGGCGA+TGG | 0.436846 | 1.1:+67074949 | MS.gene050209:CDS |
| CTCTCGTCCGGGAACACAGC+TGG | 0.437255 | 1.1:-67075165 | None:intergenic |
| GGAACTTGCCGACGAATTAA+GGG | 0.438594 | 1.1:+67075975 | MS.gene050209:CDS |
| CGTCCCTCGGAACTCTCGTC+CGG | 0.439061 | 1.1:-67075177 | None:intergenic |
| AAGGATCGTGGAACGTTGCT+TGG | 0.447140 | 1.1:+67075022 | MS.gene050209:CDS |
| TTCATCGTTCTGACTCAGCT+TGG | 0.448002 | 1.1:+67075067 | MS.gene050209:CDS |
| TGCTATATTTACCAAATCCA+TGG | 0.450384 | 1.1:-67076809 | None:intergenic |
| TGTGTCTATAGGTTTATAGA+AGG | 0.457572 | 1.1:+67076245 | MS.gene050209:intron |
| GCGGTGGAGCTGCTTCGATA+TGG | 0.467969 | 1.1:+67074920 | MS.gene050209:CDS |
| GACGAAAGGCGTGGTGGTGG+TGG | 0.470943 | 1.1:-67074813 | None:intergenic |
| AGGCGGTGGAATGGTGGCGG+CGG | 0.476240 | 1.1:-67074873 | None:intergenic |
| CACCGCCGGTTGAGATTTGG+AGG | 0.479044 | 1.1:-67074903 | None:intergenic |
| GTATCAACGTCAACAATAAC+CGG | 0.479760 | 1.1:-67075123 | None:intergenic |
| CTTGGGATGCTCGTCCTGCT+AGG | 0.480235 | 1.1:+67075040 | MS.gene050209:CDS |
| TACTTTAACCCTTAATTCGT+CGG | 0.484358 | 1.1:-67075983 | None:intergenic |
| GAGTTCATCGTCATGTTCAT+CGG | 0.487216 | 1.1:-67075220 | None:intergenic |
| AAAGGCGTGGTGGTGGTGGT+GGG | 0.493789 | 1.1:-67074809 | None:intergenic |
| CTCCAAATCTCAACCGGCGG+TGG | 0.496363 | 1.1:+67074904 | MS.gene050209:CDS |
| GGTGGTTGCAGGCGGTGGAA+TGG | 0.499927 | 1.1:-67074882 | None:intergenic |
| GCCACTCACTCATCCATGCT+TGG | 0.503058 | 1.1:+67074745 | None:intergenic |
| ATCCTTCACCTTTGAGCTCG+TGG | 0.505031 | 1.1:-67075005 | None:intergenic |
| TTGGTAAATATAGCAAAATA+CGG | 0.508333 | 1.1:+67076817 | MS.gene050209:CDS |
| CGCCGGTTGAGATTTGGAGG+TGG | 0.513387 | 1.1:-67074900 | None:intergenic |
| TGAGAAGCCATTAATAGCTC+AGG | 0.515628 | 1.1:-67076323 | None:intergenic |
| AACCACCTCCAAATCTCAAC+CGG | 0.518771 | 1.1:+67074898 | MS.gene050209:CDS |
| AGGATCGTGGAACGTTGCTT+GGG | 0.525778 | 1.1:+67075023 | MS.gene050209:CDS |
| TGCAGGCGGTGGAATGGTGG+CGG | 0.528482 | 1.1:-67074876 | None:intergenic |
| CGGCGGGCGGGGAAAGTGAG+AGG | 0.534229 | 1.1:-67074856 | None:intergenic |
| CTGTTCAGAGCAATAGCTCA+TGG | 0.539965 | 1.1:+67075904 | MS.gene050209:CDS |
| GTCCCTCGGAACTCTCGTCC+GGG | 0.541544 | 1.1:-67075176 | None:intergenic |
| GTGTCTATAGGTTTATAGAA+GGG | 0.543445 | 1.1:+67076246 | MS.gene050209:intron |
| TGTCTATAGGTTTATAGAAG+GGG | 0.544260 | 1.1:+67076247 | MS.gene050209:intron |
| GAACGATGAAGCCACCTAGC+AGG | 0.545883 | 1.1:-67075054 | None:intergenic |
| GGTTGCAGGCGGTGGAATGG+TGG | 0.547561 | 1.1:-67074879 | None:intergenic |
| TAGGGGTGCTTGCTGATGGT+CGG | 0.550798 | 1.1:+67075878 | MS.gene050209:intron |
| CAACAATAACCGGCGGCGCA+AGG | 0.554275 | 1.1:-67075113 | None:intergenic |
| CGGAATCCATCGCCGCCGCA+AGG | 0.559044 | 1.1:-67074955 | None:intergenic |
| TCCGGGAACACAGCTGGAGT+CGG | 0.561302 | 1.1:-67075159 | None:intergenic |
| GGCGCAGAGTACACCAAGCA+TGG | 0.563817 | 1.1:-67074758 | None:intergenic |
| AGCTCAAAGGTGAAGGATCG+TGG | 0.569548 | 1.1:+67075010 | MS.gene050209:CDS |
| AACGCTGATTACAGAGTCAC+GGG | 0.570421 | 1.1:+67075243 | MS.gene050209:CDS |
| CATGAGAGATGCAAGCTCCA+TGG | 0.570844 | 1.1:+67076792 | MS.gene050209:CDS |
| CAACAGACTTATGTTTGGGG+AGG | 0.576052 | 1.1:+67076296 | MS.gene050209:CDS |
| GACCACGAGCTCAAAGGTGA+AGG | 0.577751 | 1.1:+67075003 | MS.gene050209:CDS |
| GATCCAAGGACGAGAGCGAG+TGG | 0.579496 | 1.1:-67074779 | None:intergenic |
| GGTATAGGGGTGCTTGCTGA+TGG | 0.584649 | 1.1:+67075874 | MS.gene050209:intron |
| TATCGAAGCAGCTCCACCGC+CGG | 0.586713 | 1.1:-67074917 | None:intergenic |
| CATCATGACCACGAGCTCAA+AGG | 0.587256 | 1.1:+67074997 | MS.gene050209:CDS |
| AGAGACGAAAGGCGTGGTGG+TGG | 0.589008 | 1.1:-67074816 | None:intergenic |
| GAAAGTGAGAGGAGCGACAG+TGG | 0.606183 | 1.1:-67074845 | None:intergenic |
| CAACGCTGATTACAGAGTCA+CGG | 0.607136 | 1.1:+67075242 | MS.gene050209:CDS |
| CACGCGATTACTCCTTGCGG+CGG | 0.611520 | 1.1:+67074943 | MS.gene050209:CDS |
| GCCTAATGAAAGTCGACAGA+GGG | 0.612158 | 1.1:+67075954 | MS.gene050209:CDS |
| GGGAACACAGCTGGAGTCGG+CGG | 0.616409 | 1.1:-67075156 | None:intergenic |
| TTCCCGGACGAGAGTTCCGA+GGG | 0.617132 | 1.1:+67075174 | MS.gene050209:CDS |
| GGCGATGGATTCCGAAGCAG+CGG | 0.621773 | 1.1:+67074964 | MS.gene050209:CDS |
| TATTGTTGACGTTGATACCG+AGG | 0.628764 | 1.1:+67075128 | MS.gene050209:CDS |
| TGAAGAATATATGAATGATG+AGG | 0.630448 | 1.1:+67076840 | MS.gene050209:CDS |
| GTTCCCGGACGAGAGTTCCG+AGG | 0.633607 | 1.1:+67075173 | MS.gene050209:CDS |
| GATTTGGAGGTGGTTGCAGG+CGG | 0.637060 | 1.1:-67074890 | None:intergenic |
| TGGTGGGAAGAGAAGATCCA+AGG | 0.650314 | 1.1:-67074793 | None:intergenic |
| CGCCTAATGAAAGTCGACAG+AGG | 0.650904 | 1.1:+67075953 | MS.gene050209:CDS |
| CACCTCCAAATCTCAACCGG+CGG | 0.653859 | 1.1:+67074901 | MS.gene050209:CDS |
| GGGATGCTCGTCCTGCTAGG+TGG | 0.655002 | 1.1:+67075043 | MS.gene050209:CDS |
| ACAGGCGCAAGGAAACAGAA+TGG | 0.661069 | 1.1:+67076134 | MS.gene050209:CDS |
| ATTCAACAGACTTATGTTTG+GGG | 0.663997 | 1.1:+67076293 | MS.gene050209:CDS |
| AATGTGCTATTTCATCGACA+TGG | 0.668256 | 1.1:+67076874 | MS.gene050209:CDS |
| GAGAGAGACGAAAGGCGTGG+TGG | 0.678901 | 1.1:-67074819 | None:intergenic |
| CGTGAGAGAGACGAAAGGCG+TGG | 0.686067 | 1.1:-67074822 | None:intergenic |
| AGTGGCGTGAGAGAGACGAA+AGG | 0.697149 | 1.1:-67074827 | None:intergenic |
| TGGCACGCGATTACTCCTTG+CGG | 0.725561 | 1.1:+67074940 | MS.gene050209:CDS |
| TGTTGACGTTGATACCGAGG+CGG | 0.731095 | 1.1:+67075131 | MS.gene050209:CDS |
| TCAACGTCAACAATAACCGG+CGG | 0.746562 | 1.1:-67075120 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTACTTTTATTTACA+TGG | + | chr1.1:67076201-67076220 | MS.gene050209:intron | 10.0% |
| !! | AAATAAAACATCACAAAAAT+TGG | - | chr1.1:67076093-67076112 | None:intergenic | 15.0% |
| !! | AATAAAACATCACAAAAATT+GGG | - | chr1.1:67076092-67076111 | None:intergenic | 15.0% |
| !!! | ATTTCATTTTTTGTCTTTAA+TGG | + | chr1.1:67075423-67075442 | MS.gene050209:intron | 15.0% |
| !!! | ATTTTTGTGATGTTTTATTT+AGG | + | chr1.1:67076093-67076112 | MS.gene050209:intron | 15.0% |
| !!! | ATTTTTTTCATATAAGTACA+GGG | + | chr1.1:67075448-67075467 | MS.gene050209:intron | 15.0% |
| !!! | TATTTTTTTCATATAAGTAC+AGG | + | chr1.1:67075447-67075466 | MS.gene050209:intron | 15.0% |
| !! | AACAAAAACTATTGTATCAT+TGG | - | chr1.1:67075696-67075715 | None:intergenic | 20.0% |
| !! | TTGGTAAATATAGCAAAATA+CGG | + | chr1.1:67076817-67076836 | MS.gene050209:CDS | 20.0% |
| !!! | TTATTGTTCAGTTATTTTGA+TGG | + | chr1.1:67075782-67075801 | MS.gene050209:intron | 20.0% |
| ! | AAAAAGAATGTTGACAAAGA+AGG | - | chr1.1:67076047-67076066 | None:intergenic | 25.0% |
| ! | AATCGATGGATATTAATCTA+CGG | + | chr1.1:67076578-67076597 | MS.gene050209:intron | 25.0% |
| ! | AATTCAACAGACTTATGTTT+GGG | + | chr1.1:67076292-67076311 | MS.gene050209:CDS | 25.0% |
| ! | CTTATAGAGAAACAAATTTC+TGG | + | chr1.1:67076635-67076654 | MS.gene050209:intron | 25.0% |
| ! | GGAAACTACATACAATTATT+TGG | + | chr1.1:67076175-67076194 | MS.gene050209:intron | 25.0% |
| ! | TAAGTTATGAAGACAATGTT+AGG | - | chr1.1:67076750-67076769 | None:intergenic | 25.0% |
| ! | TAATGAAAGATGATAATCGA+TGG | + | chr1.1:67076564-67076583 | MS.gene050209:intron | 25.0% |
| ! | TATAAGTTTGTATCACTGAA+TGG | + | chr1.1:67075853-67075872 | MS.gene050209:intron | 25.0% |
| ! | TGAAGAATATATGAATGATG+AGG | + | chr1.1:67076840-67076859 | MS.gene050209:CDS | 25.0% |
| AACATAAGTCTGTTGAATTC+TGG | - | chr1.1:67076291-67076310 | None:intergenic | 30.0% | |
| AACATCATATCCTACAACAA+CGG | + | chr1.1:67076497-67076516 | MS.gene050209:intron | 30.0% | |
| AACATGAGTTAGAGATTATG+TGG | + | chr1.1:67075823-67075842 | MS.gene050209:intron | 30.0% | |
| ACATGAGTTAGAGATTATGT+GGG | + | chr1.1:67075824-67075843 | MS.gene050209:intron | 30.0% | |
| ACTTGTTCAATATGAAGTGT+CGG | + | chr1.1:67075733-67075752 | MS.gene050209:intron | 30.0% | |
| ATCGATGGATATTAATCTAC+GGG | + | chr1.1:67076579-67076598 | MS.gene050209:intron | 30.0% | |
| ATTCAACAGACTTATGTTTG+GGG | + | chr1.1:67076293-67076312 | MS.gene050209:CDS | 30.0% | |
| CATTGTCTTCATAACTTACA+AGG | + | chr1.1:67076752-67076771 | MS.gene050209:intron | 30.0% | |
| GAATTCAACAGACTTATGTT+TGG | + | chr1.1:67076291-67076310 | MS.gene050209:CDS | 30.0% | |
| GTGTCTATAGGTTTATAGAA+GGG | + | chr1.1:67076246-67076265 | MS.gene050209:intron | 30.0% | |
| TACTTTAACCCTTAATTCGT+CGG | - | chr1.1:67075986-67076005 | None:intergenic | 30.0% | |
| TCTCTCATGAAGACATATAT+TGG | - | chr1.1:67076781-67076800 | None:intergenic | 30.0% | |
| TGCTATATTTACCAAATCCA+TGG | - | chr1.1:67076812-67076831 | None:intergenic | 30.0% | |
| TGGGTAACAAAATTCATTGA+AGG | - | chr1.1:67076073-67076092 | None:intergenic | 30.0% | |
| TGTCTATAGGTTTATAGAAG+GGG | + | chr1.1:67076247-67076266 | MS.gene050209:intron | 30.0% | |
| TGTGTCTATAGGTTTATAGA+AGG | + | chr1.1:67076245-67076264 | MS.gene050209:intron | 30.0% | |
| TTACAACTACGAAACAACAA+CGG | + | chr1.1:67075611-67075630 | MS.gene050209:intron | 30.0% | |
| TTGTATCACTGAATGGTATA+GGG | + | chr1.1:67075860-67075879 | MS.gene050209:intron | 30.0% | |
| TTTCATATAAGTACAGGGAT+TGG | + | chr1.1:67075453-67075472 | MS.gene050209:intron | 30.0% | |
| TTTGTATCACTGAATGGTAT+AGG | + | chr1.1:67075859-67075878 | MS.gene050209:intron | 30.0% | |
| ! | TCATTTTGTGGTAAATCGTT+GGG | + | chr1.1:67076659-67076678 | MS.gene050209:intron | 30.0% |
| ! | TTCATTTTGTGGTAAATCGT+TGG | + | chr1.1:67076658-67076677 | MS.gene050209:intron | 30.0% |
| !! | GTTATATTTGCTGTGTCTAT+AGG | + | chr1.1:67076234-67076253 | MS.gene050209:intron | 30.0% |
| !! | TCTTGCTAGAACTTTTGAAA+CGG | + | chr1.1:67076012-67076031 | MS.gene050209:intron | 30.0% |
| !!! | CAAATTTCTGGTTCATTTTG+TGG | + | chr1.1:67076647-67076666 | MS.gene050209:intron | 30.0% |
| ACAAGTTAAACCGTTGTTGT+AGG | - | chr1.1:67076510-67076529 | None:intergenic | 35.0% | |
| ATTGAACAAGTGTCTTGAGT+TGG | - | chr1.1:67075724-67075743 | None:intergenic | 35.0% | |
| CAATGTTAGGTACAACGAAA+TGG | - | chr1.1:67076737-67076756 | None:intergenic | 35.0% | |
| GTATCAACGTCAACAATAAC+CGG | - | chr1.1:67075126-67075145 | None:intergenic | 35.0% | |
| TCGATGAAATAGCACATTGA+TGG | - | chr1.1:67076872-67076891 | None:intergenic | 35.0% | |
| TGTATCACTGAATGGTATAG+GGG | + | chr1.1:67075861-67075880 | MS.gene050209:intron | 35.0% | |
| ! | ATATAAGTACAGGGATTGGT+TGG | + | chr1.1:67075457-67075476 | MS.gene050209:intron | 35.0% |
| ! | TTGCTGAAGAACTTTTGAAC+AGG | + | chr1.1:67076116-67076135 | MS.gene050209:CDS | 35.0% |
| !! | AACAACGGTTTAACTTGTTG+GGG | + | chr1.1:67076512-67076531 | MS.gene050209:intron | 35.0% |
| !! | AATGTGCTATTTCATCGACA+TGG | + | chr1.1:67076874-67076893 | MS.gene050209:CDS | 35.0% |
| !! | ACAACAACGGTTTAACTTGT+TGG | + | chr1.1:67076510-67076529 | MS.gene050209:intron | 35.0% |
| !! | CAACAACGGTTTAACTTGTT+GGG | + | chr1.1:67076511-67076530 | MS.gene050209:intron | 35.0% |
| ACATGGTCACTACGAACTAT+TGG | + | chr1.1:67076891-67076910 | MS.gene050209:CDS | 40.0% | |
| GAGTTCATCGTCATGTTCAT+CGG | - | chr1.1:67075223-67075242 | None:intergenic | 40.0% | |
| GTGACAAACCATCAAACACT+TGG | - | chr1.1:67075582-67075601 | None:intergenic | 40.0% | |
| GTTTGTGACCAAGTGTTTGA+TGG | + | chr1.1:67075571-67075590 | MS.gene050209:intron | 40.0% | |
| TATTGTTGACGTTGATACCG+AGG | + | chr1.1:67075128-67075147 | MS.gene050209:CDS | 40.0% | |
| TGAGAAGCCATTAATAGCTC+AGG | - | chr1.1:67076326-67076345 | None:intergenic | 40.0% | |
| ! | AGCTTGCTTGAAAAATGGAG+AGG | + | chr1.1:67075927-67075946 | MS.gene050209:CDS | 40.0% |
| ! | CATGGAGCTTGCTTGAAAAA+TGG | + | chr1.1:67075922-67075941 | MS.gene050209:CDS | 40.0% |
| ! | TGGTGAGCTTTGTCATTTGA+AGG | + | chr1.1:67076154-67076173 | MS.gene050209:intron | 40.0% |
| !!! | CTAGAACTTTTGAAACGGAG+AGG | + | chr1.1:67076017-67076036 | MS.gene050209:intron | 40.0% |
| AACCACCTCCAAATCTCAAC+CGG | + | chr1.1:67074898-67074917 | MS.gene050209:CDS | 45.0% | |
| AGATGCAAGCTCCATGGATT+TGG | + | chr1.1:67076798-67076817 | MS.gene050209:CDS | 45.0% | |
| AGGAGAGCCTGAGCTATTAA+TGG | + | chr1.1:67076316-67076335 | MS.gene050209:CDS | 45.0% | |
| ATCTTTCACTTCACGTCCCT+CGG | - | chr1.1:67075193-67075212 | None:intergenic | 45.0% | |
| CAACAGACTTATGTTTGGGG+AGG | + | chr1.1:67076296-67076315 | MS.gene050209:CDS | 45.0% | |
| CTGTTCAGAGCAATAGCTCA+TGG | + | chr1.1:67075904-67075923 | MS.gene050209:CDS | 45.0% | |
| GCCTAATGAAAGTCGACAGA+GGG | + | chr1.1:67075954-67075973 | MS.gene050209:CDS | 45.0% | |
| GGAACTTGCCGACGAATTAA+GGG | + | chr1.1:67075975-67075994 | MS.gene050209:CDS | 45.0% | |
| GTGGTAAATCGTTGGGACTT+GGG | + | chr1.1:67076666-67076685 | MS.gene050209:intron | 45.0% | |
| TCAACGTCAACAATAACCGG+CGG | - | chr1.1:67075123-67075142 | None:intergenic | 45.0% | |
| TGTGGTAAATCGTTGGGACT+TGG | + | chr1.1:67076665-67076684 | MS.gene050209:intron | 45.0% | |
| TTCATCGTTCTGACTCAGCT+TGG | + | chr1.1:67075067-67075086 | MS.gene050209:CDS | 45.0% | |
| ! | AACGCTGATTACAGAGTCAC+GGG | + | chr1.1:67075243-67075262 | MS.gene050209:CDS | 45.0% |
| ! | AGAACTTTTGAACAGGCGCA+AGG | + | chr1.1:67076123-67076142 | MS.gene050209:CDS | 45.0% |
| ! | CAACGCTGATTACAGAGTCA+CGG | + | chr1.1:67075242-67075261 | MS.gene050209:CDS | 45.0% |
| ! | GACTCAGCTTGGCTTCTTTT+CGG | + | chr1.1:67075078-67075097 | MS.gene050209:CDS | 45.0% |
| !! | TAAGTACAGGGATTGGTTGG+TGG | + | chr1.1:67075460-67075479 | MS.gene050209:intron | 45.0% |
| !! | TCCCTCTGTCGACTTTCATT+AGG | - | chr1.1:67075958-67075977 | None:intergenic | 45.0% |
| AAGGATCGTGGAACGTTGCT+TGG | + | chr1.1:67075022-67075041 | MS.gene050209:CDS | 50.0% | |
| ACAGGCGCAAGGAAACAGAA+TGG | + | chr1.1:67076134-67076153 | MS.gene050209:CDS | 50.0% | |
| AGCTCAAAGGTGAAGGATCG+TGG | + | chr1.1:67075010-67075029 | MS.gene050209:CDS | 50.0% | |
| AGGATCGTGGAACGTTGCTT+GGG | + | chr1.1:67075023-67075042 | MS.gene050209:CDS | 50.0% | |
| ATCCTTCACCTTTGAGCTCG+TGG | - | chr1.1:67075008-67075027 | None:intergenic | 50.0% | |
| CATCATGACCACGAGCTCAA+AGG | + | chr1.1:67074997-67075016 | MS.gene050209:CDS | 50.0% | |
| CATGAGAGATGCAAGCTCCA+TGG | + | chr1.1:67076792-67076811 | MS.gene050209:CDS | 50.0% | |
| CGCCTAATGAAAGTCGACAG+AGG | + | chr1.1:67075953-67075972 | MS.gene050209:CDS | 50.0% | |
| GGGAACTTGCCGACGAATTA+AGG | + | chr1.1:67075974-67075993 | MS.gene050209:CDS | 50.0% | |
| TGAGATTTGGAGGTGGTTGC+AGG | - | chr1.1:67074896-67074915 | None:intergenic | 50.0% | |
| TGGTGGGAAGAGAAGATCCA+AGG | - | chr1.1:67074796-67074815 | None:intergenic | 50.0% | |
| TGTTGACGTTGATACCGAGG+CGG | + | chr1.1:67075131-67075150 | MS.gene050209:CDS | 50.0% | |
| AGTGGCGTGAGAGAGACGAA+AGG | - | chr1.1:67074830-67074849 | None:intergenic | 55.0% | |
| CACCTCCAAATCTCAACCGG+CGG | + | chr1.1:67074901-67074920 | MS.gene050209:CDS | 55.0% | |
| GAAAGTGAGAGGAGCGACAG+TGG | - | chr1.1:67074848-67074867 | None:intergenic | 55.0% | |
| GAACGATGAAGCCACCTAGC+AGG | - | chr1.1:67075057-67075076 | None:intergenic | 55.0% | |
| GACCACGAGCTCAAAGGTGA+AGG | + | chr1.1:67075003-67075022 | MS.gene050209:CDS | 55.0% | |
| GATTTGGAGGTGGTTGCAGG+CGG | - | chr1.1:67074893-67074912 | None:intergenic | 55.0% | |
| TGGCACGCGATTACTCCTTG+CGG | + | chr1.1:67074940-67074959 | MS.gene050209:CDS | 55.0% | |
| ! | GAAGCATCACACCGCTGCTT+CGG | - | chr1.1:67074978-67074997 | None:intergenic | 55.0% |
| !! | GGTATAGGGGTGCTTGCTGA+TGG | + | chr1.1:67075874-67075893 | MS.gene050209:intron | 55.0% |
| !! | GTACAGGGATTGGTTGGTGG+TGG | + | chr1.1:67075463-67075482 | MS.gene050209:intron | 55.0% |
| !! | TAGGGGTGCTTGCTGATGGT+CGG | + | chr1.1:67075878-67075897 | MS.gene050209:intron | 55.0% |
| !! | TGGTTGGTGGTGGTGGTGTT+TGG | + | chr1.1:67075473-67075492 | MS.gene050209:intron | 55.0% |
| ATTACTCCTTGCGGCGGCGA+TGG | + | chr1.1:67074949-67074968 | MS.gene050209:CDS | 60.0% | |
| CAACAATAACCGGCGGCGCA+AGG | - | chr1.1:67075116-67075135 | None:intergenic | 60.0% | |
| CACGCGATTACTCCTTGCGG+CGG | + | chr1.1:67074943-67074962 | MS.gene050209:CDS | 60.0% | |
| CGTGAGAGAGACGAAAGGCG+TGG | - | chr1.1:67074825-67074844 | None:intergenic | 60.0% | |
| CTCCAAATCTCAACCGGCGG+TGG | + | chr1.1:67074904-67074923 | MS.gene050209:CDS | 60.0% | |
| CTTGGGATGCTCGTCCTGCT+AGG | + | chr1.1:67075040-67075059 | MS.gene050209:CDS | 60.0% | |
| GATCCAAGGACGAGAGCGAG+TGG | - | chr1.1:67074782-67074801 | None:intergenic | 60.0% | |
| GCGGTGGAGCTGCTTCGATA+TGG | + | chr1.1:67074920-67074939 | MS.gene050209:CDS | 60.0% | |
| TATCGAAGCAGCTCCACCGC+CGG | - | chr1.1:67074920-67074939 | None:intergenic | 60.0% | |
| TCCGGGAACACAGCTGGAGT+CGG | - | chr1.1:67075162-67075181 | None:intergenic | 60.0% | |
| TTCCCGGACGAGAGTTCCGA+GGG | + | chr1.1:67075174-67075193 | MS.gene050209:CDS | 60.0% | |
| ! | AGAGACGAAAGGCGTGGTGG+TGG | - | chr1.1:67074819-67074838 | None:intergenic | 60.0% |
| ! | CACCGCCGGTTGAGATTTGG+AGG | - | chr1.1:67074906-67074925 | None:intergenic | 60.0% |
| ! | CGCCGGTTGAGATTTGGAGG+TGG | - | chr1.1:67074903-67074922 | None:intergenic | 60.0% |
| ! | CTCCACCGCCGGTTGAGATT+TGG | - | chr1.1:67074909-67074928 | None:intergenic | 60.0% |
| ! | GAGAGAGACGAAAGGCGTGG+TGG | - | chr1.1:67074822-67074841 | None:intergenic | 60.0% |
| ! | GGCGATGGATTCCGAAGCAG+CGG | + | chr1.1:67074964-67074983 | MS.gene050209:CDS | 60.0% |
| !! | AAAGGCGTGGTGGTGGTGGT+GGG | - | chr1.1:67074812-67074831 | None:intergenic | 60.0% |
| !! | CAGGGATTGGTTGGTGGTGG+TGG | + | chr1.1:67075466-67075485 | MS.gene050209:intron | 60.0% |
| CGTCCCTCGGAACTCTCGTC+CGG | - | chr1.1:67075180-67075199 | None:intergenic | 65.0% | |
| CTCTCGTCCGGGAACACAGC+TGG | - | chr1.1:67075168-67075187 | None:intergenic | 65.0% | |
| GGGAACACAGCTGGAGTCGG+CGG | - | chr1.1:67075159-67075178 | None:intergenic | 65.0% | |
| GGGATGCTCGTCCTGCTAGG+TGG | + | chr1.1:67075043-67075062 | MS.gene050209:CDS | 65.0% | |
| GGTGGTTGCAGGCGGTGGAA+TGG | - | chr1.1:67074885-67074904 | None:intergenic | 65.0% | |
| GGTTGCAGGCGGTGGAATGG+TGG | - | chr1.1:67074882-67074901 | None:intergenic | 65.0% | |
| GTCCCTCGGAACTCTCGTCC+GGG | - | chr1.1:67075179-67075198 | None:intergenic | 65.0% | |
| GTTCCCGGACGAGAGTTCCG+AGG | + | chr1.1:67075173-67075192 | MS.gene050209:CDS | 65.0% | |
| TGCAGGCGGTGGAATGGTGG+CGG | - | chr1.1:67074879-67074898 | None:intergenic | 65.0% | |
| TTGGAGGTGGTTGCAGGCGG+TGG | - | chr1.1:67074890-67074909 | None:intergenic | 65.0% | |
| ! | GCCGACTCCAGCTGTGTTCC+CGG | + | chr1.1:67075158-67075177 | MS.gene050209:CDS | 65.0% |
| !! | GAAAGGCGTGGTGGTGGTGG+TGG | - | chr1.1:67074813-67074832 | None:intergenic | 65.0% |
| !! | GACGAAAGGCGTGGTGGTGG+TGG | - | chr1.1:67074816-67074835 | None:intergenic | 65.0% |
| CGGAATCCATCGCCGCCGCA+AGG | - | chr1.1:67074958-67074977 | None:intergenic | 70.0% | |
| GCGCCACTCGCTCTCGTCCT+TGG | + | chr1.1:67074776-67074795 | MS.gene050209:CDS | 70.0% | |
| !! | AGGCGGTGGAATGGTGGCGG+CGG | - | chr1.1:67074876-67074895 | None:intergenic | 70.0% |
| CGGCGGGCGGGGAAAGTGAG+AGG | - | chr1.1:67074859-67074878 | None:intergenic | 75.0% | |
| CTGCGCTTGCCTTGCGCCGC+CGG | + | chr1.1:67075104-67075123 | MS.gene050209:CDS | 75.0% | |
| !! | GGCGGTGGAATGGTGGCGGC+GGG | - | chr1.1:67074875-67074894 | None:intergenic | 75.0% |
| !! | GGTGGAATGGTGGCGGCGGG+CGG | - | chr1.1:67074872-67074891 | None:intergenic | 75.0% |
| !! | GTGGAATGGTGGCGGCGGGC+GGG | - | chr1.1:67074871-67074890 | None:intergenic | 75.0% |
| !! | TGGAATGGTGGCGGCGGGCG+GGG | - | chr1.1:67074870-67074889 | None:intergenic | 75.0% |
| ! | TGGAGTCGGCGGCGCCGCCT+CGG | - | chr1.1:67075148-67075167 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 67074760 | 67076924 | 67074760 | ID=MS.gene050209 |
| chr1.1 | mRNA | 67074760 | 67076924 | 67074760 | ID=MS.gene050209.t1;Parent=MS.gene050209 |
| chr1.1 | exon | 67074760 | 67075264 | 67074760 | ID=MS.gene050209.t1.exon1;Parent=MS.gene050209.t1 |
| chr1.1 | CDS | 67074760 | 67075264 | 67074760 | ID=cds.MS.gene050209.t1;Parent=MS.gene050209.t1 |
| chr1.1 | exon | 67075881 | 67076002 | 67075881 | ID=MS.gene050209.t1.exon2;Parent=MS.gene050209.t1 |
| chr1.1 | CDS | 67075881 | 67076002 | 67075881 | ID=cds.MS.gene050209.t1;Parent=MS.gene050209.t1 |
| chr1.1 | exon | 67076115 | 67076155 | 67076115 | ID=MS.gene050209.t1.exon3;Parent=MS.gene050209.t1 |
| chr1.1 | CDS | 67076115 | 67076155 | 67076115 | ID=cds.MS.gene050209.t1;Parent=MS.gene050209.t1 |
| chr1.1 | exon | 67076256 | 67076354 | 67076256 | ID=MS.gene050209.t1.exon4;Parent=MS.gene050209.t1 |
| chr1.1 | CDS | 67076256 | 67076354 | 67076256 | ID=cds.MS.gene050209.t1;Parent=MS.gene050209.t1 |
| chr1.1 | exon | 67076774 | 67076924 | 67076774 | ID=MS.gene050209.t1.exon5;Parent=MS.gene050209.t1 |
| chr1.1 | CDS | 67076774 | 67076924 | 67076774 | ID=cds.MS.gene050209.t1;Parent=MS.gene050209.t1 |
| Gene Sequence |
| Protein sequence |
