Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96813.t1 | XP_003607703.1 | 96 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 2.50E-61 | 244.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96813.t1 | Q8LDI5 | 58.6 | 111 | 46 | 0 | 10 | 120 | 2 | 112 | 7.6e-35 | 147.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96813.t1 | G7JF34 | 96.0 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 1.8e-61 | 244.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050409 | MS.gene96813 | 0.820681 | 6.03E-53 | -1.69E-46 |
| MS.gene050412 | MS.gene96813 | 0.822483 | 2.31E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74758 | MS.gene96813 | PPI |
| MS.gene96813 | MS.gene014475 | PPI |
| MS.gene96813 | MS.gene064706 | PPI |
| MS.gene96813 | MS.gene043301 | PPI |
| MS.gene96813 | MS.gene27271 | PPI |
| MS.gene42302 | MS.gene96813 | PPI |
| MS.gene69451 | MS.gene96813 | PPI |
| MS.gene24227 | MS.gene96813 | PPI |
| MS.gene96813 | MS.gene79654 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96813.t1 | MTR_4g081380 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 3.40e-88 | 252 |
| MS.gene96813.t1 | MTR_2g082590 | 71.311 | 122 | 35 | 0 | 1 | 122 | 1 | 122 | 1.47e-63 | 189 |
| MS.gene96813.t1 | MTR_2g082590 | 64.444 | 135 | 35 | 1 | 1 | 122 | 1 | 135 | 3.10e-60 | 181 |
| MS.gene96813.t1 | MTR_2g010750 | 59.322 | 118 | 48 | 0 | 6 | 123 | 5 | 122 | 1.76e-49 | 154 |
| MS.gene96813.t1 | MTR_4g081380 | 92.208 | 77 | 6 | 0 | 1 | 77 | 1 | 77 | 4.72e-48 | 149 |
| MS.gene96813.t1 | MTR_2g010750 | 57.333 | 75 | 32 | 0 | 6 | 80 | 5 | 79 | 4.34e-27 | 96.7 |
| MS.gene96813.t1 | MTR_7g009070 | 41.237 | 97 | 57 | 0 | 17 | 113 | 33 | 129 | 4.57e-25 | 92.8 |
| MS.gene96813.t1 | MTR_7g073680 | 35.294 | 102 | 66 | 0 | 12 | 113 | 26 | 127 | 1.36e-22 | 86.7 |
| MS.gene96813.t1 | MTR_1g023140 | 36.893 | 103 | 65 | 0 | 8 | 110 | 4 | 106 | 6.22e-22 | 84.3 |
| MS.gene96813.t1 | MTR_3g112410 | 35.455 | 110 | 67 | 1 | 1 | 110 | 1 | 106 | 1.68e-21 | 83.2 |
| MS.gene96813.t1 | MTR_8g005320 | 34.343 | 99 | 65 | 0 | 15 | 113 | 31 | 129 | 3.38e-21 | 82.8 |
| MS.gene96813.t1 | MTR_5g021180 | 35.965 | 114 | 71 | 1 | 1 | 114 | 1 | 112 | 3.69e-21 | 82.4 |
| MS.gene96813.t1 | MTR_8g006685 | 34.343 | 99 | 65 | 0 | 15 | 113 | 100 | 198 | 2.74e-20 | 82.4 |
| MS.gene96813.t1 | MTR_8g006560 | 34.343 | 99 | 65 | 0 | 15 | 113 | 100 | 198 | 2.74e-20 | 82.4 |
| MS.gene96813.t1 | MTR_5g037950 | 38.938 | 113 | 65 | 2 | 4 | 114 | 13 | 123 | 2.15e-19 | 77.8 |
| MS.gene96813.t1 | MTR_8g107460 | 32.075 | 106 | 72 | 0 | 8 | 113 | 252 | 357 | 1.78e-18 | 79.7 |
| MS.gene96813.t1 | MTR_5g037930 | 33.333 | 105 | 70 | 0 | 10 | 114 | 20 | 124 | 5.63e-16 | 69.3 |
| MS.gene96813.t1 | MTR_5g037890 | 34.286 | 105 | 69 | 0 | 10 | 114 | 18 | 122 | 1.66e-15 | 67.8 |
| MS.gene96813.t1 | MTR_1g098660 | 33.721 | 86 | 55 | 2 | 35 | 118 | 81 | 166 | 2.98e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96813.t1 | AT1G11530 | 58.036 | 112 | 47 | 0 | 10 | 121 | 2 | 113 | 1.49e-48 | 151 |
| MS.gene96813.t1 | AT3G51030 | 39.623 | 106 | 64 | 0 | 8 | 113 | 4 | 109 | 4.81e-24 | 89.4 |
| MS.gene96813.t1 | AT3G08710 | 37.615 | 109 | 68 | 0 | 15 | 123 | 28 | 136 | 1.09e-23 | 89.4 |
| MS.gene96813.t1 | AT3G08710 | 37.615 | 109 | 68 | 0 | 15 | 123 | 28 | 136 | 1.09e-23 | 89.4 |
| MS.gene96813.t1 | AT3G08710 | 37.615 | 109 | 68 | 0 | 15 | 123 | 28 | 136 | 1.09e-23 | 89.4 |
| MS.gene96813.t1 | AT5G39950 | 37.037 | 108 | 68 | 0 | 6 | 113 | 21 | 128 | 1.42e-23 | 89.0 |
| MS.gene96813.t1 | AT3G56420 | 38.889 | 108 | 66 | 0 | 5 | 112 | 35 | 142 | 1.77e-23 | 89.4 |
| MS.gene96813.t1 | AT3G56420 | 38.889 | 108 | 66 | 0 | 5 | 112 | 35 | 142 | 1.77e-23 | 89.4 |
| MS.gene96813.t1 | AT3G56420 | 38.889 | 108 | 66 | 0 | 5 | 112 | 35 | 142 | 1.77e-23 | 89.4 |
| MS.gene96813.t1 | AT1G45145 | 34.286 | 105 | 69 | 0 | 9 | 113 | 4 | 108 | 5.98e-23 | 86.7 |
| MS.gene96813.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 9 | 112 | 39 | 142 | 1.21e-22 | 87.0 |
| MS.gene96813.t1 | AT2G40790 | 36.538 | 104 | 66 | 0 | 9 | 112 | 39 | 142 | 1.21e-22 | 87.0 |
| MS.gene96813.t1 | AT1G59730 | 34.615 | 104 | 68 | 0 | 12 | 115 | 23 | 126 | 1.31e-21 | 83.6 |
| MS.gene96813.t1 | AT5G42980 | 34.906 | 106 | 69 | 0 | 9 | 114 | 4 | 109 | 1.85e-19 | 77.8 |
| MS.gene96813.t1 | AT1G19730 | 31.776 | 107 | 72 | 1 | 8 | 113 | 4 | 110 | 9.86e-19 | 76.3 |
| MS.gene96813.t1 | AT1G69880 | 29.524 | 105 | 74 | 0 | 12 | 116 | 39 | 143 | 2.94e-17 | 73.2 |
| MS.gene96813.t1 | AT3G17880 | 34.211 | 114 | 71 | 1 | 11 | 124 | 264 | 373 | 6.10e-16 | 72.8 |
| MS.gene96813.t1 | AT3G17880 | 34.211 | 114 | 71 | 1 | 11 | 124 | 271 | 380 | 6.19e-16 | 72.8 |
| MS.gene96813.t1 | AT2G35010 | 30.841 | 107 | 72 | 1 | 12 | 116 | 86 | 192 | 2.75e-12 | 61.2 |
| MS.gene96813.t1 | AT2G35010 | 30.841 | 107 | 72 | 1 | 12 | 116 | 86 | 192 | 2.75e-12 | 61.2 |
Find 31 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTACAAGGCAACCTTTAT+TGG | 0.239798 | 4.3:-28680569 | None:intergenic |
| GAACCCTTTCTTTGAAGAAT+TGG | 0.305687 | 4.3:+28680792 | MS.gene96813:CDS |
| GTGCAAATCCTGATGAAATT+AGG | 0.320699 | 4.3:+28681951 | MS.gene96813:CDS |
| TCCTCCACTCATCAACAAAA+AGG | 0.360970 | 4.3:-28681906 | None:intergenic |
| ATCACTGAAGCTACCAATAA+AGG | 0.364334 | 4.3:+28680556 | MS.gene96813:CDS |
| GTGATTTGGAGGAATGAGTT+TGG | 0.374475 | 4.3:-28681997 | None:intergenic |
| CATGGCATTGATTTCCAACT+TGG | 0.380007 | 4.3:-28681879 | None:intergenic |
| CATCATCCATCAGAGTGATT+TGG | 0.391841 | 4.3:-28682011 | None:intergenic |
| GGTGGATGTGGACGAAGTTA+AGG | 0.395797 | 4.3:+28680846 | MS.gene96813:CDS |
| GGCATTGATTTCCAACTTGG+AGG | 0.441850 | 4.3:-28681876 | None:intergenic |
| CAGAAAGAGGACATCTTGAT+AGG | 0.447661 | 4.3:-28680821 | None:intergenic |
| AAAGGGTTCATAGCAATAGA+AGG | 0.450955 | 4.3:-28680778 | None:intergenic |
| GATGCCAATTCTTCAAAGAA+AGG | 0.458372 | 4.3:-28680796 | None:intergenic |
| CCTCTTTCTGAAGGTGGATG+TGG | 0.473122 | 4.3:+28680834 | MS.gene96813:CDS |
| GCACCAACAGCTTTCTCCAC+TGG | 0.488674 | 4.3:-28681932 | None:intergenic |
| CCACATCCACCTTCAGAAAG+AGG | 0.505638 | 4.3:-28680834 | None:intergenic |
| ATCCTGATGAAATTAGGAAA+AGG | 0.511549 | 4.3:+28681957 | MS.gene96813:CDS |
| CATCCATCAGAGTGATTTGG+AGG | 0.522008 | 4.3:-28682008 | None:intergenic |
| ATTCCTCCAAATCACTCTGA+TGG | 0.522941 | 4.3:+28682005 | MS.gene96813:CDS |
| ATGCCAATTCTTCAAAGAAA+GGG | 0.531001 | 4.3:-28680795 | None:intergenic |
| AAATTGACTCAAGAAAATCA+TGG | 0.550454 | 4.3:+28680524 | MS.gene96813:CDS |
| AATTGACTCAAGAAAATCAT+GGG | 0.553360 | 4.3:+28680525 | MS.gene96813:CDS |
| TATTGGTAGCTTCAGTGATG+TGG | 0.558401 | 4.3:-28680552 | None:intergenic |
| TCAAGATGTCCTCTTTCTGA+AGG | 0.562276 | 4.3:+28680825 | MS.gene96813:CDS |
| AGATGTCCTCTTTCTGAAGG+TGG | 0.570239 | 4.3:+28680828 | MS.gene96813:CDS |
| TGATGAAATTAGGAAAAGGA+TGG | 0.577508 | 4.3:+28681961 | MS.gene96813:CDS |
| CTAGGAAGTAGCCTCCAAGT+TGG | 0.602024 | 4.3:+28681865 | MS.gene96813:intron |
| AATCCAGTGGAGAAAGCTGT+TGG | 0.602305 | 4.3:+28681929 | MS.gene96813:CDS |
| AAAGAGGACATCTTGATAGG+TGG | 0.610226 | 4.3:-28680818 | None:intergenic |
| AATAAGTAGAAAATAATGGG+TGG | 0.664491 | 4.3:+28680469 | None:intergenic |
| GATGAGTGGAGGAAATCCAG+TGG | 0.727295 | 4.3:+28681916 | MS.gene96813:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTATATAGTTATATTAAT+AGG | + | chr4.3:28680692-28680711 | MS.gene96813:intron | 10.0% |
| !! | ATTACATAACATATTATTAT+TGG | - | chr4.3:28681748-28681767 | None:intergenic | 10.0% |
| !! | TAAATAAAAAAATACATGTA+GGG | + | chr4.3:28681647-28681666 | MS.gene96813:intron | 10.0% |
| !! | AATAAACAATTTGAGAATAT+TGG | - | chr4.3:28681239-28681258 | None:intergenic | 15.0% |
| !! | ACAAATTATATTGAAACAAA+AGG | - | chr4.3:28681490-28681509 | None:intergenic | 15.0% |
| !! | CATGTAAAATTATAACAATT+GGG | + | chr4.3:28680639-28680658 | MS.gene96813:intron | 15.0% |
| !! | CTAAATAAAAAAATACATGT+AGG | + | chr4.3:28681646-28681665 | MS.gene96813:intron | 15.0% |
| !! | TTTAAAAACACAAATGAAAA+AGG | - | chr4.3:28680905-28680924 | None:intergenic | 15.0% |
| !!! | AATATAATTTGTGAATTTTC+TGG | + | chr4.3:28681498-28681517 | MS.gene96813:intron | 15.0% |
| !! | AATTATATTGAAACAAAAGG+TGG | - | chr4.3:28681487-28681506 | None:intergenic | 20.0% |
| !! | ATGCCATTATTATAAGTTAA+AGG | - | chr4.3:28681349-28681368 | None:intergenic | 20.0% |
| !! | GCATGTAAAATTATAACAAT+TGG | + | chr4.3:28680638-28680657 | MS.gene96813:intron | 20.0% |
| !! | TTTGTTCATAAAATATTTGC+AGG | + | chr4.3:28680723-28680742 | MS.gene96813:intron | 20.0% |
| !!! | ATTAGTTTAGAAAATAAGCA+TGG | - | chr4.3:28681626-28681645 | None:intergenic | 20.0% |
| !!! | GAAGTTAAGGTAATTTTTTA+TGG | + | chr4.3:28680859-28680878 | MS.gene96813:intron | 20.0% |
| !!! | TAAAATTGATGATACTTACA+AGG | - | chr4.3:28680585-28680604 | None:intergenic | 20.0% |
| !!! | TGTAAGTATCATCAATTTTA+TGG | + | chr4.3:28680585-28680604 | MS.gene96813:intron | 20.0% |
| ! | AAACTAACATGTAGTTTCTT+TGG | - | chr4.3:28681157-28681176 | None:intergenic | 25.0% |
| ! | CATAAAATATTTGCAGGTTA+TGG | + | chr4.3:28680729-28680748 | MS.gene96813:intron | 25.0% |
| ! | TTATAACAATTGGGTGATTA+TGG | + | chr4.3:28680648-28680667 | MS.gene96813:intron | 25.0% |
| ! | TTGTAGATGATATCAATATG+TGG | + | chr4.3:28681377-28681396 | MS.gene96813:intron | 25.0% |
| !! | AAATTGACTCAAGAAAATCA+TGG | + | chr4.3:28680524-28680543 | MS.gene96813:CDS | 25.0% |
| !! | AATTGACTCAAGAAAATCAT+GGG | + | chr4.3:28680525-28680544 | MS.gene96813:CDS | 25.0% |
| !! | ACGCTTTCAATTTAAAATGT+CGG | - | chr4.3:28680966-28680985 | None:intergenic | 25.0% |
| !! | ATGGAAGAAACTGTTTATTT+TGG | + | chr4.3:28681560-28681579 | MS.gene96813:intron | 25.0% |
| !! | CTTTTATCATCATCCTTTTT+AGG | + | chr4.3:28681417-28681436 | MS.gene96813:intron | 25.0% |
| !! | GAGCCTTTAACTTATAATAA+TGG | + | chr4.3:28681343-28681362 | MS.gene96813:intron | 25.0% |
| !! | TTAACTAACTACCTTTTGTT+TGG | + | chr4.3:28681815-28681834 | MS.gene96813:intron | 25.0% |
| !!! | AATTTTTTATGGTCTATGGA+GGG | + | chr4.3:28680870-28680889 | MS.gene96813:intron | 25.0% |
| !!! | AGGTAATTTTTTATGGTCTA+TGG | + | chr4.3:28680866-28680885 | MS.gene96813:intron | 25.0% |
| !!! | TAATTTTTTATGGTCTATGG+AGG | + | chr4.3:28680869-28680888 | MS.gene96813:intron | 25.0% |
| ATCCTGATGAAATTAGGAAA+AGG | + | chr4.3:28681957-28681976 | MS.gene96813:CDS | 30.0% | |
| ATGCCAATTCTTCAAAGAAA+GGG | - | chr4.3:28680798-28680817 | None:intergenic | 30.0% | |
| TATGATATCTCCTTCTATGT+TGG | + | chr4.3:28681176-28681195 | MS.gene96813:intron | 30.0% | |
| TCTCCACTCAACATAAAAAT+TGG | - | chr4.3:28681533-28681552 | None:intergenic | 30.0% | |
| TGATGAAATTAGGAAAAGGA+TGG | + | chr4.3:28681961-28681980 | MS.gene96813:CDS | 30.0% | |
| ! | AAACTGAAAGTTTAGTTCGT+TGG | - | chr4.3:28681037-28681056 | None:intergenic | 30.0% |
| ! | ATCCTTTTCCTAATTTCATC+AGG | - | chr4.3:28681962-28681981 | None:intergenic | 30.0% |
| ! | ATGCCAATTTTTATGTTGAG+TGG | + | chr4.3:28681527-28681546 | MS.gene96813:intron | 30.0% |
| ! | CAGTTCAAAAAAGTACAGTT+CGG | + | chr4.3:28681097-28681116 | MS.gene96813:intron | 30.0% |
| !! | TGGTTCATTTTTCTGCTTAT+TGG | + | chr4.3:28680749-28680768 | MS.gene96813:CDS | 30.0% |
| !! | TTATCATCATCCTTTTTAGG+TGG | + | chr4.3:28681420-28681439 | MS.gene96813:intron | 30.0% |
| !!! | ATTTTTTATGGTCTATGGAG+GGG | + | chr4.3:28680871-28680890 | MS.gene96813:intron | 30.0% |
| AAAGGGTTCATAGCAATAGA+AGG | - | chr4.3:28680781-28680800 | None:intergenic | 35.0% | |
| ACAACAATCATGCATCAAAG+AGG | - | chr4.3:28681771-28681790 | None:intergenic | 35.0% | |
| ACTTACAAGGCAACCTTTAT+TGG | - | chr4.3:28680572-28680591 | None:intergenic | 35.0% | |
| ATCACTGAAGCTACCAATAA+AGG | + | chr4.3:28680556-28680575 | MS.gene96813:CDS | 35.0% | |
| ATCTCCTTCTATGTTGGAAA+TGG | + | chr4.3:28681182-28681201 | MS.gene96813:intron | 35.0% | |
| CATAGAACAGTCCAAACAAA+AGG | - | chr4.3:28681829-28681848 | None:intergenic | 35.0% | |
| GATGCCAATTCTTCAAAGAA+AGG | - | chr4.3:28680799-28680818 | None:intergenic | 35.0% | |
| GTGAACTAATTGTCACAGTT+CGG | + | chr4.3:28681057-28681076 | MS.gene96813:intron | 35.0% | |
| GTGCAAATCCTGATGAAATT+AGG | + | chr4.3:28681951-28681970 | MS.gene96813:CDS | 35.0% | |
| ! | GAACCCTTTCTTTGAAGAAT+TGG | + | chr4.3:28680792-28680811 | MS.gene96813:CDS | 35.0% |
| ! | TGAGTCAATTTTCACAACCT+TGG | - | chr4.3:28680515-28680534 | None:intergenic | 35.0% |
| ! | TGCACGGATAATGGTATATA+TGG | - | chr4.3:28680940-28680959 | None:intergenic | 35.0% |
| !! | TGCTTTTTGTGACTCTATCT+AGG | + | chr4.3:28681847-28681866 | MS.gene96813:intron | 35.0% |
| !! | TTTAAAATGTCGGTGTTGCA+CGG | - | chr4.3:28680956-28680975 | None:intergenic | 35.0% |
| !!! | AGTCTCTGACATGTTTTAGT+AGG | + | chr4.3:28680990-28681009 | MS.gene96813:intron | 35.0% |
| !!! | ATCCTTTTTAGGTGGTTTCA+AGG | + | chr4.3:28681428-28681447 | MS.gene96813:intron | 35.0% |
| !!! | TCCTTTTTAGGTGGTTTCAA+GGG | + | chr4.3:28681429-28681448 | MS.gene96813:intron | 35.0% |
| AAAGAGGACATCTTGATAGG+TGG | - | chr4.3:28680821-28680840 | None:intergenic | 40.0% | |
| AAGCATGCTATCACTAAGAC+TGG | + | chr4.3:28681316-28681335 | MS.gene96813:intron | 40.0% | |
| ACAACAGCACAAAAAGTCCA+AGG | + | chr4.3:28680495-28680514 | MS.gene96813:CDS | 40.0% | |
| ATAAACACAGCCCTCAAAGT+AGG | - | chr4.3:28681595-28681614 | None:intergenic | 40.0% | |
| CAGAAAGAGGACATCTTGAT+AGG | - | chr4.3:28680824-28680843 | None:intergenic | 40.0% | |
| CATCAACAAAAAGGTAGGCA+TGG | - | chr4.3:28681900-28681919 | None:intergenic | 40.0% | |
| CCACTCATCAACAAAAAGGT+AGG | - | chr4.3:28681905-28681924 | None:intergenic | 40.0% | |
| GATTCCAAACCCTACTTTGA+GGG | + | chr4.3:28681582-28681601 | MS.gene96813:intron | 40.0% | |
| GGTGATTATGGTTTCAGCTT+CGG | + | chr4.3:28680660-28680679 | MS.gene96813:intron | 40.0% | |
| TAAACACAGCCCTCAAAGTA+GGG | - | chr4.3:28681594-28681613 | None:intergenic | 40.0% | |
| TCAAGATGTCCTCTTTCTGA+AGG | + | chr4.3:28680825-28680844 | MS.gene96813:CDS | 40.0% | |
| TCCCTTGAAACCACCTAAAA+AGG | - | chr4.3:28681433-28681452 | None:intergenic | 40.0% | |
| TCCTCCACTCATCAACAAAA+AGG | - | chr4.3:28681909-28681928 | None:intergenic | 40.0% | |
| TTGCATGTGCTGCAAATTAG+AGG | - | chr4.3:28681210-28681229 | None:intergenic | 40.0% | |
| ! | GTGATTTGGAGGAATGAGTT+TGG | - | chr4.3:28682000-28682019 | None:intergenic | 40.0% |
| ! | TACAGTTCGGTTTTCTGTGA+AGG | + | chr4.3:28681110-28681129 | MS.gene96813:intron | 40.0% |
| ! | TATTGGTAGCTTCAGTGATG+TGG | - | chr4.3:28680555-28680574 | None:intergenic | 40.0% |
| ! | TGCTATCACTAAGACTGGTT+TGG | + | chr4.3:28681321-28681340 | MS.gene96813:intron | 40.0% |
| !! | ACCTTTTTGTTGATGAGTGG+AGG | + | chr4.3:28681905-28681924 | MS.gene96813:CDS | 40.0% |
| !! | CATGGCATTGATTTCCAACT+TGG | - | chr4.3:28681882-28681901 | None:intergenic | 40.0% |
| !! | CCTACCTTTTTGTTGATGAG+TGG | + | chr4.3:28681902-28681921 | MS.gene96813:CDS | 40.0% |
| !! | CTGTGAAGGTAGTTCTGATT+CGG | + | chr4.3:28681124-28681143 | MS.gene96813:intron | 40.0% |
| AATCCAGTGGAGAAAGCTGT+TGG | + | chr4.3:28681929-28681948 | MS.gene96813:CDS | 45.0% | |
| AGTTCCTGTGACCTCAAAGT+GGG | - | chr4.3:28681276-28681295 | None:intergenic | 45.0% | |
| GGATTCCAAACCCTACTTTG+AGG | + | chr4.3:28681581-28681600 | MS.gene96813:intron | 45.0% | |
| GGCTCCATTTCCAACATAGA+AGG | - | chr4.3:28681189-28681208 | None:intergenic | 45.0% | |
| GTTGAGTGGAGAGACTCTTA+TGG | + | chr4.3:28681541-28681560 | MS.gene96813:intron | 45.0% | |
| TGATTCCAAACCCCACTTTG+AGG | + | chr4.3:28681262-28681281 | MS.gene96813:intron | 45.0% | |
| TTTATGGTCTATGGAGGGGA+AGG | + | chr4.3:28680875-28680894 | MS.gene96813:intron | 45.0% | |
| ! | AGATGTCCTCTTTCTGAAGG+TGG | + | chr4.3:28680828-28680847 | MS.gene96813:CDS | 45.0% |
| !! | AGGTAGTTCTGATTCGGTTC+AGG | + | chr4.3:28681130-28681149 | MS.gene96813:intron | 45.0% |
| !! | GGCATTGATTTCCAACTTGG+AGG | - | chr4.3:28681879-28681898 | None:intergenic | 45.0% |
| !!! | TAAAAGATATTATTTTAATT+AGG | - | chr4.3:28681403-28681422 | None:intergenic | 5.0% |
| ACAGCCCTCAAAGTAGGGTT+TGG | - | chr4.3:28681589-28681608 | None:intergenic | 50.0% | |
| CAGTTCCTGTGACCTCAAAG+TGG | - | chr4.3:28681277-28681296 | None:intergenic | 50.0% | |
| CCACATCCACCTTCAGAAAG+AGG | - | chr4.3:28680837-28680856 | None:intergenic | 50.0% | |
| CTAGGAAGTAGCCTCCAAGT+TGG | + | chr4.3:28681865-28681884 | MS.gene96813:intron | 50.0% | |
| GATGAGTGGAGGAAATCCAG+TGG | + | chr4.3:28681916-28681935 | MS.gene96813:CDS | 50.0% | |
| GGTGGATGTGGACGAAGTTA+AGG | + | chr4.3:28680846-28680865 | MS.gene96813:CDS | 50.0% | |
| GTTCCTGTGACCTCAAAGTG+GGG | - | chr4.3:28681275-28681294 | None:intergenic | 50.0% | |
| TGTGACCTCAAAGTGGGGTT+TGG | - | chr4.3:28681270-28681289 | None:intergenic | 50.0% | |
| ! | CCTCTTTCTGAAGGTGGATG+TGG | + | chr4.3:28680834-28680853 | MS.gene96813:CDS | 50.0% |
| !! | AAACCCCACTTTGAGGTCAC+AGG | + | chr4.3:28681269-28681288 | MS.gene96813:intron | 50.0% |
| !! | TGTCGGTGTTGCACGGATAA+TGG | - | chr4.3:28680949-28680968 | None:intergenic | 50.0% |
| GCACCAACAGCTTTCTCCAC+TGG | - | chr4.3:28681935-28681954 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 28680484 | 28682024 | 28680484 | ID=MS.gene96813 |
| chr4.3 | mRNA | 28680484 | 28682024 | 28680484 | ID=MS.gene96813.t1;Parent=MS.gene96813 |
| chr4.3 | exon | 28680484 | 28680585 | 28680484 | ID=MS.gene96813.t1.exon1;Parent=MS.gene96813.t1 |
| chr4.3 | CDS | 28680484 | 28680585 | 28680484 | ID=cds.MS.gene96813.t1;Parent=MS.gene96813.t1 |
| chr4.3 | exon | 28680745 | 28680867 | 28680745 | ID=MS.gene96813.t1.exon2;Parent=MS.gene96813.t1 |
| chr4.3 | CDS | 28680745 | 28680867 | 28680745 | ID=cds.MS.gene96813.t1;Parent=MS.gene96813.t1 |
| chr4.3 | exon | 28681869 | 28682024 | 28681869 | ID=MS.gene96813.t1.exon3;Parent=MS.gene96813.t1 |
| chr4.3 | CDS | 28681869 | 28682024 | 28681869 | ID=cds.MS.gene96813.t1;Parent=MS.gene96813.t1 |
| Gene Sequence |
| Protein sequence |