Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050575.t1 | XP_004516473.1 | 83.5 | 412 | 66 | 1 | 4 | 415 | 4 | 413 | 1.00E-183 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050575.t1 | Q8VXY7 | 65.0 | 408 | 140 | 2 | 10 | 415 | 44 | 450 | 7.3e-143 | 508.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050575.t1 | A0A1S2Z7N2 | 83.5 | 412 | 66 | 1 | 4 | 415 | 4 | 413 | 7.2e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050575 | MS.gene22871 | 0.982917 | 2.42E-156 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59944 | MS.gene050575 | PPI |
| MS.gene050575 | MS.gene59641 | PPI |
| MS.gene050575 | MS.gene036759 | PPI |
| MS.gene050575 | MS.gene62397 | PPI |
| MS.gene036758 | MS.gene050575 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050575.t1 | MTR_0003s0470 | 86.616 | 396 | 51 | 1 | 20 | 415 | 22 | 415 | 0.0 | 695 |
| MS.gene050575.t1 | MTR_3g462280 | 85.783 | 415 | 53 | 3 | 4 | 415 | 12 | 423 | 0.0 | 687 |
| MS.gene050575.t1 | MTR_4g114710 | 47.208 | 394 | 196 | 3 | 24 | 415 | 15 | 398 | 9.33e-115 | 341 |
| MS.gene050575.t1 | MTR_0008s0170 | 32.512 | 406 | 247 | 8 | 28 | 415 | 14 | 410 | 1.09e-57 | 194 |
| MS.gene050575.t1 | MTR_0008s0130 | 32.840 | 405 | 243 | 10 | 30 | 415 | 16 | 410 | 1.84e-55 | 189 |
| MS.gene050575.t1 | MTR_2g011600 | 32.203 | 413 | 237 | 11 | 30 | 415 | 23 | 419 | 2.91e-52 | 181 |
| MS.gene050575.t1 | MTR_4g050990 | 33.252 | 409 | 240 | 9 | 28 | 415 | 14 | 410 | 3.89e-51 | 177 |
| MS.gene050575.t1 | MTR_2g089520 | 33.252 | 409 | 240 | 9 | 28 | 415 | 14 | 410 | 3.89e-51 | 177 |
| MS.gene050575.t1 | MTR_2g011580 | 32.558 | 387 | 231 | 9 | 49 | 415 | 2 | 378 | 8.37e-51 | 176 |
| MS.gene050575.t1 | MTR_2g047968 | 33.092 | 414 | 241 | 11 | 24 | 415 | 11 | 410 | 5.88e-50 | 175 |
| MS.gene050575.t1 | MTR_2g011600 | 32.312 | 359 | 204 | 10 | 84 | 415 | 22 | 368 | 1.50e-44 | 159 |
| MS.gene050575.t1 | MTR_1g071120 | 30.606 | 330 | 199 | 8 | 30 | 341 | 58 | 375 | 3.80e-38 | 142 |
| MS.gene050575.t1 | MTR_8g007285 | 29.714 | 350 | 213 | 9 | 92 | 415 | 20 | 362 | 2.42e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050575.t1 | AT1G70330 | 65.865 | 416 | 139 | 2 | 2 | 415 | 36 | 450 | 0.0 | 537 |
| MS.gene050575.t1 | AT1G02630 | 47.704 | 392 | 189 | 5 | 24 | 415 | 14 | 389 | 7.47e-122 | 359 |
| MS.gene050575.t1 | AT1G02630 | 40.816 | 392 | 172 | 6 | 24 | 415 | 14 | 345 | 1.62e-91 | 280 |
| MS.gene050575.t1 | AT4G05120 | 32.203 | 413 | 238 | 11 | 28 | 415 | 17 | 412 | 1.18e-50 | 176 |
| MS.gene050575.t1 | AT4G05120 | 32.203 | 413 | 238 | 11 | 28 | 415 | 17 | 412 | 1.18e-50 | 176 |
| MS.gene050575.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 2.71e-48 | 170 |
| MS.gene050575.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 2.71e-48 | 170 |
| MS.gene050575.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 8.06e-48 | 169 |
| MS.gene050575.t1 | AT4G05130 | 30.175 | 401 | 244 | 11 | 37 | 415 | 26 | 412 | 2.46e-47 | 167 |
| MS.gene050575.t1 | AT1G61630 | 29.684 | 411 | 253 | 9 | 28 | 415 | 15 | 412 | 5.39e-46 | 164 |
| MS.gene050575.t1 | AT4G05140 | 29.238 | 407 | 259 | 10 | 28 | 415 | 17 | 413 | 1.70e-43 | 157 |
| MS.gene050575.t1 | AT3G09990 | 29.383 | 405 | 244 | 9 | 37 | 415 | 25 | 413 | 3.33e-43 | 156 |
Find 103 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGGGCTGTTGGGATTTC+AGG | 0.094893 | 7.3:-1761342 | MS.gene050575:CDS |
| GCTCTATTATAGCTTGGTTT+TGG | 0.174004 | 7.3:-1760280 | MS.gene050575:CDS |
| ACACTATTAACGTGTCTCTT+AGG | 0.195857 | 7.3:-1760425 | MS.gene050575:CDS |
| TACACGCAGGCGGTCATTGC+TGG | 0.225351 | 7.3:-1761258 | MS.gene050575:CDS |
| AGTGTGTTCTTCTTAGTTAT+TGG | 0.230173 | 7.3:-1760314 | MS.gene050575:CDS |
| TTCATTATAGTACTTTATAA+TGG | 0.242520 | 7.3:+1760826 | None:intergenic |
| TTGGTGCAGGGATCTATTCT+TGG | 0.258857 | 7.3:-1761306 | MS.gene050575:CDS |
| TGGCTCCGCCGGTGAGTTGC+CGG | 0.310687 | 7.3:-1761286 | MS.gene050575:CDS |
| TTCTTCTACCTTCATGTTCA+AGG | 0.339199 | 7.3:-1761713 | MS.gene050575:CDS |
| ACACATTAAAGCAAGTAATA+AGG | 0.345288 | 7.3:+1760597 | None:intergenic |
| ATCTCTGTCCGGAAGAATTT+CGG | 0.346613 | 7.3:+1760455 | None:intergenic |
| TTAGTTATTGGTCTGGCTGC+TGG | 0.347855 | 7.3:-1760302 | MS.gene050575:CDS |
| AAGCAAGTAATAAGGAGAAT+TGG | 0.349646 | 7.3:+1760605 | None:intergenic |
| ACGTCACTGCTGGGGCTGTT+GGG | 0.361788 | 7.3:-1761350 | MS.gene050575:CDS |
| TACGTCACTGCTGGGGCTGT+TGG | 0.363518 | 7.3:-1761351 | MS.gene050575:CDS |
| CTTGATGTCGTGTATGTTAA+GGG | 0.366056 | 7.3:-1761399 | MS.gene050575:CDS |
| TTTAATGTGTTTGACCTTGT+TGG | 0.367568 | 7.3:-1760584 | MS.gene050575:CDS |
| CTCTGCATGCTGCAACTTCA+CGG | 0.371199 | 7.3:+1760352 | None:intergenic |
| CTATAATGAACTTAAGATTC+AGG | 0.375812 | 7.3:-1760813 | MS.gene050575:CDS |
| TTCAGGTGTGGCTAATGCTT+TGG | 0.388115 | 7.3:-1761325 | MS.gene050575:CDS |
| ATACGGTCAACGCTTGCATC+GGG | 0.388734 | 7.3:+1761564 | None:intergenic |
| TCATTATAGTACTTTATAAT+GGG | 0.388994 | 7.3:+1760827 | None:intergenic |
| ACTCTCAGCTTCTTAAAGAT+TGG | 0.396591 | 7.3:-1760631 | MS.gene050575:CDS |
| ACACGCAGGCGGTCATTGCT+GGG | 0.398252 | 7.3:-1761257 | MS.gene050575:CDS |
| TGCACGGTCCGAAATTCTTC+CGG | 0.401715 | 7.3:-1760463 | MS.gene050575:CDS |
| CTGCTGGCTCTATTATAGCT+TGG | 0.403267 | 7.3:-1760286 | MS.gene050575:CDS |
| GTCGAGTCGGGTTGTATAAC+GGG | 0.404515 | 7.3:-1761377 | MS.gene050575:CDS |
| GTGACGCTTGCAATATTTCC+TGG | 0.410311 | 7.3:-1760674 | MS.gene050575:CDS |
| GGGTGCTTGTTTCTTTCCTA+AGG | 0.415931 | 7.3:-1760976 | MS.gene050575:CDS |
| CACTATTAACGTGTCTCTTA+GGG | 0.428475 | 7.3:-1760424 | MS.gene050575:CDS |
| GTTCTTCTTAGTTATTGGTC+TGG | 0.429994 | 7.3:-1760309 | MS.gene050575:CDS |
| CTGTCTGGAGATCAACTGTA+TGG | 0.434174 | 7.3:-1760751 | MS.gene050575:CDS |
| GGTCGAGTCGGGTTGTATAA+CGG | 0.441509 | 7.3:-1761378 | MS.gene050575:CDS |
| GCTTGATGTCGTGTATGTTA+AGG | 0.447841 | 7.3:-1761400 | MS.gene050575:CDS |
| GTCCTTTGACAGTATCTGTC+TGG | 0.460668 | 7.3:-1760766 | MS.gene050575:CDS |
| GCATCGGCTATTTGTTCCCA+TGG | 0.462726 | 7.3:-1761629 | MS.gene050575:CDS |
| CAACGCTTGCATCGGGGTAA+AGG | 0.467006 | 7.3:+1761571 | None:intergenic |
| ATACCACTTGATTGTTCCTA+AGG | 0.474334 | 7.3:+1760724 | None:intergenic |
| TGTGGCTAATGCTTTGGTGC+AGG | 0.485275 | 7.3:-1761319 | MS.gene050575:CDS |
| CACGCAGGCGGTCATTGCTG+GGG | 0.489338 | 7.3:-1761256 | MS.gene050575:CDS |
| AGAAAGTAGCAGAAGACAAA+TGG | 0.493821 | 7.3:-1761683 | MS.gene050575:CDS |
| TTAGGAACAATCAAGTGGTA+TGG | 0.496112 | 7.3:-1760722 | MS.gene050575:CDS |
| ACCATTGTCGTCTTCAACGG+CGG | 0.502286 | 7.3:+1760787 | None:intergenic |
| GTTTACACGCAAGATGCCTC+TGG | 0.510856 | 7.3:-1760938 | MS.gene050575:CDS |
| TTGCAGCATGCAGAGACTGC+GGG | 0.517119 | 7.3:-1760344 | MS.gene050575:CDS |
| TGTCTCTTAGGGCTTACAAA+TGG | 0.520478 | 7.3:-1760413 | MS.gene050575:CDS |
| TGCAAGCATCCTAAGAAGAG+AGG | 0.520652 | 7.3:+1760482 | None:intergenic |
| AATGAGATTTGTGTCGGTTG+AGG | 0.521136 | 7.3:+1761484 | None:intergenic |
| CTCTTCTTAGGATGCTTGCA+CGG | 0.521892 | 7.3:-1760479 | MS.gene050575:CDS |
| TGTATGTTAAGGGTCGAGTC+GGG | 0.521957 | 7.3:-1761389 | MS.gene050575:CDS |
| ACAATCAAGTGGTATGGGCT+CGG | 0.529311 | 7.3:-1760716 | MS.gene050575:CDS |
| ACCGCCTGCGTGTACCTCTC+CGG | 0.532675 | 7.3:+1761267 | None:intergenic |
| GGCTGTTGGGATTTCAGGTG+TGG | 0.535654 | 7.3:-1761337 | MS.gene050575:CDS |
| AAATCATCAATACACTGGTA+AGG | 0.536010 | 7.3:+1760387 | None:intergenic |
| TCAACTGTATGGGATACCTT+AGG | 0.538806 | 7.3:-1760740 | MS.gene050575:CDS |
| TGTGATTATGTTCATATGCA+TGG | 0.539930 | 7.3:-1760876 | MS.gene050575:CDS |
| GATACGGTCAACGCTTGCAT+CGG | 0.540085 | 7.3:+1761563 | None:intergenic |
| GTGTATGTTAAGGGTCGAGT+CGG | 0.540507 | 7.3:-1761390 | MS.gene050575:CDS |
| GGATCTATTCTTGGCTCCGC+CGG | 0.541157 | 7.3:-1761297 | MS.gene050575:CDS |
| ATCTACTTCACACTTGGCAT+CGG | 0.551559 | 7.3:-1761645 | MS.gene050575:CDS |
| TTTGTCGTCCTTGAACATGA+AGG | 0.552481 | 7.3:+1761705 | None:intergenic |
| TAGGAACAATCAAGTGGTAT+GGG | 0.556979 | 7.3:-1760721 | MS.gene050575:CDS |
| GTGGCTAATGCTTTGGTGCA+GGG | 0.564289 | 7.3:-1761318 | MS.gene050575:CDS |
| AGACACGTTAATAGTGTCAC+AGG | 0.565534 | 7.3:+1760431 | None:intergenic |
| AGGACCATTGTCGTCTTCAA+CGG | 0.572794 | 7.3:+1760784 | None:intergenic |
| AACATACACGACATCAAGCA+AGG | 0.573774 | 7.3:+1761404 | None:intergenic |
| GTGTCACAGGAATCTCTGTC+CGG | 0.575678 | 7.3:+1760444 | None:intergenic |
| GTACCTCTCCGGCAACTCAC+CGG | 0.590223 | 7.3:+1761278 | None:intergenic |
| AGCTAAAATCATCAATACAC+TGG | 0.598738 | 7.3:+1760382 | None:intergenic |
| TGCAAAGTAGAGCAAAGATA+CGG | 0.603721 | 7.3:+1761547 | None:intergenic |
| ACATCTTCTGTAATGTAACC+AGG | 0.604109 | 7.3:+1760656 | None:intergenic |
| ACGCAGGCGGTCATTGCTGG+GGG | 0.609305 | 7.3:-1761255 | MS.gene050575:CDS |
| TATATAATCTACTTCACACT+TGG | 0.609971 | 7.3:-1761651 | MS.gene050575:CDS |
| GTTGCAGCATGCAGAGACTG+CGG | 0.611240 | 7.3:-1760345 | MS.gene050575:CDS |
| AGGTAGAAGAAGAACAATGG+TGG | 0.611992 | 7.3:+1761725 | None:intergenic |
| CTGTGATGAATGCGTTCCAT+GGG | 0.612636 | 7.3:+1761613 | None:intergenic |
| TGTCTGGAGATCAACTGTAT+GGG | 0.613864 | 7.3:-1760750 | MS.gene050575:CDS |
| GCAAGCATCCTAAGAAGAGA+GGG | 0.616215 | 7.3:+1760483 | None:intergenic |
| GCTGTGATGAATGCGTTCCA+TGG | 0.616389 | 7.3:+1761612 | None:intergenic |
| CGTGGGAATGAGATTTGTGT+CGG | 0.618153 | 7.3:+1761478 | None:intergenic |
| AATCTTTAAGAAGCTGAGAG+TGG | 0.626615 | 7.3:+1760633 | None:intergenic |
| CCTCTCCGGCAACTCACCGG+CGG | 0.634884 | 7.3:+1761281 | None:intergenic |
| CTCCAGACAGATACTGTCAA+AGG | 0.635770 | 7.3:+1760764 | None:intergenic |
| AAGCAAGGGAACTATGAGGA+GGG | 0.636359 | 7.3:+1761419 | None:intergenic |
| ATCCAACGTTGATCCTCACG+TGG | 0.642546 | 7.3:+1761460 | None:intergenic |
| CCGCCGGTGAGTTGCCGGAG+AGG | 0.644765 | 7.3:-1761281 | MS.gene050575:CDS |
| AAGGTAAGAGAAGTAATCAA+CGG | 0.645014 | 7.3:+1761590 | None:intergenic |
| CAAGCAAGGGAACTATGAGG+AGG | 0.646036 | 7.3:+1761418 | None:intergenic |
| CATCAAGCAAGGGAACTATG+AGG | 0.650180 | 7.3:+1761415 | None:intergenic |
| GCCGGAGAGGTACACGCAGG+CGG | 0.656282 | 7.3:-1761268 | MS.gene050575:CDS |
| ACATACACGACATCAAGCAA+GGG | 0.657824 | 7.3:+1761405 | None:intergenic |
| TCCCACGTGAGGATCAACGT+TGG | 0.661083 | 7.3:-1761462 | MS.gene050575:CDS |
| TGAAGGTAGAAGAAGAACAA+TGG | 0.668431 | 7.3:+1761722 | None:intergenic |
| ACAAATCTCATTCCCACGTG+AGG | 0.669174 | 7.3:-1761473 | MS.gene050575:CDS |
| TGCAGCATGCAGAGACTGCG+GGG | 0.670996 | 7.3:-1760343 | MS.gene050575:CDS |
| TACGGTCAACGCTTGCATCG+GGG | 0.672941 | 7.3:+1761565 | None:intergenic |
| ATACCTTAGGAACAATCAAG+TGG | 0.685947 | 7.3:-1760727 | MS.gene050575:CDS |
| GGTTGAGGATGATGATGATG+AGG | 0.690333 | 7.3:+1761499 | None:intergenic |
| GCCGCCGTTGAAGACGACAA+TGG | 0.692231 | 7.3:-1760788 | MS.gene050575:CDS |
| TAATGAACTTAAGATTCAGG+CGG | 0.703355 | 7.3:-1760810 | MS.gene050575:CDS |
| TCCAACGTTGATCCTCACGT+GGG | 0.722026 | 7.3:+1761461 | None:intergenic |
| GTTGCCGGAGAGGTACACGC+AGG | 0.746866 | 7.3:-1761271 | MS.gene050575:CDS |
| CTAGAAGGTATACTGCAGTG+AGG | 0.762315 | 7.3:+1760555 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAAAAAAAAAGAAGA+AGG | + | chr7.3:1760805-1760824 | None:intergenic | 15.0% |
| !! | TCATTATAGTACTTTATAAT+GGG | + | chr7.3:1761188-1761207 | None:intergenic | 15.0% |
| !! | TTCATTATAGTACTTTATAA+TGG | + | chr7.3:1761189-1761208 | None:intergenic | 15.0% |
| !! | AATAAAACATGATATGAGAA+TGG | + | chr7.3:1760874-1760893 | None:intergenic | 20.0% |
| !! | ATAAAACATGATATGAGAAT+GGG | + | chr7.3:1760873-1760892 | None:intergenic | 20.0% |
| ! | ACACATTAAAGCAAGTAATA+AGG | + | chr7.3:1761418-1761437 | None:intergenic | 25.0% |
| ! | CTATAATGAACTTAAGATTC+AGG | - | chr7.3:1761199-1761218 | MS.gene050575:intron | 25.0% |
| ! | TATATAATCTACTTCACACT+TGG | - | chr7.3:1760361-1760380 | MS.gene050575:CDS | 25.0% |
| ! | TGAATGGAAAATAATGTGTA+AGG | - | chr7.3:1760947-1760966 | MS.gene050575:CDS | 25.0% |
| !!! | TTTTTTTCTTTCCCTACTTT+TGG | - | chr7.3:1760815-1760834 | MS.gene050575:CDS | 25.0% |
| AAATCATCAATACACTGGTA+AGG | + | chr7.3:1761628-1761647 | None:intergenic | 30.0% | |
| AAGCAAGTAATAAGGAGAAT+TGG | + | chr7.3:1761410-1761429 | None:intergenic | 30.0% | |
| AAGGTAAGAGAAGTAATCAA+CGG | + | chr7.3:1760425-1760444 | None:intergenic | 30.0% | |
| AGCTAAAATCATCAATACAC+TGG | + | chr7.3:1761633-1761652 | None:intergenic | 30.0% | |
| AGTGTGTTCTTCTTAGTTAT+TGG | - | chr7.3:1761698-1761717 | MS.gene050575:CDS | 30.0% | |
| GAGAATGCAAAAATTGCAAT+CGG | - | chr7.3:1761479-1761498 | MS.gene050575:CDS | 30.0% | |
| TAATGAACTTAAGATTCAGG+CGG | - | chr7.3:1761202-1761221 | MS.gene050575:intron | 30.0% | |
| TGTGATTATGTTCATATGCA+TGG | - | chr7.3:1761136-1761155 | MS.gene050575:intron | 30.0% | |
| TTTAATGTGTTTGACCTTGT+TGG | - | chr7.3:1761428-1761447 | MS.gene050575:CDS | 30.0% | |
| ! | ATTGCTTGTTTCTTGAACTT+TGG | - | chr7.3:1760989-1761008 | MS.gene050575:intron | 30.0% |
| ! | CAATTTTTGCATTCTCTAGA+AGG | + | chr7.3:1761475-1761494 | None:intergenic | 30.0% |
| ! | CAGCTTTTGTAAATATCCTT+AGG | + | chr7.3:1761055-1761074 | None:intergenic | 30.0% |
| ! | GTAATGGTTTTTCATTTCAG+GGG | - | chr7.3:1761016-1761035 | MS.gene050575:intron | 30.0% |
| ! | TTGTTTCTTGAACTTTGGAA+AGG | - | chr7.3:1760994-1761013 | MS.gene050575:intron | 30.0% |
| !! | AGGTAATGGTTTTTCATTTC+AGG | - | chr7.3:1761014-1761033 | MS.gene050575:intron | 30.0% |
| !! | CTCTATTATAGCTTGGTTTT+GGG | - | chr7.3:1761733-1761752 | MS.gene050575:CDS | 30.0% |
| !! | GGTAATGGTTTTTCATTTCA+GGG | - | chr7.3:1761015-1761034 | MS.gene050575:intron | 30.0% |
| !!! | AGTTTTTTGTATGCTGGATT+TGG | - | chr7.3:1760921-1760940 | MS.gene050575:CDS | 30.0% |
| !!! | GCAAATAGTTTTTTGTATGC+TGG | - | chr7.3:1760915-1760934 | MS.gene050575:CDS | 30.0% |
| !!! | GTTTTTTGTATGCTGGATTT+GGG | - | chr7.3:1760922-1760941 | MS.gene050575:CDS | 30.0% |
| ACACAACTTCAACCAAAAGT+AGG | + | chr7.3:1760830-1760849 | None:intergenic | 35.0% | |
| ACACTATTAACGTGTCTCTT+AGG | - | chr7.3:1761587-1761606 | MS.gene050575:CDS | 35.0% | |
| ACATCTTCTGTAATGTAACC+AGG | + | chr7.3:1761359-1761378 | None:intergenic | 35.0% | |
| ACTCTCAGCTTCTTAAAGAT+TGG | - | chr7.3:1761381-1761400 | MS.gene050575:CDS | 35.0% | |
| AGAAAGTAGCAGAAGACAAA+TGG | - | chr7.3:1760329-1760348 | MS.gene050575:CDS | 35.0% | |
| ATACCACTTGATTGTTCCTA+AGG | + | chr7.3:1761291-1761310 | None:intergenic | 35.0% | |
| ATACCTTAGGAACAATCAAG+TGG | - | chr7.3:1761285-1761304 | MS.gene050575:CDS | 35.0% | |
| CACAACTTCAACCAAAAGTA+GGG | + | chr7.3:1760829-1760848 | None:intergenic | 35.0% | |
| CACTATTAACGTGTCTCTTA+GGG | - | chr7.3:1761588-1761607 | MS.gene050575:CDS | 35.0% | |
| CTTGATGTCGTGTATGTTAA+GGG | - | chr7.3:1760613-1760632 | MS.gene050575:CDS | 35.0% | |
| GTTCTTCTTAGTTATTGGTC+TGG | - | chr7.3:1761703-1761722 | MS.gene050575:CDS | 35.0% | |
| TAGGAACAATCAAGTGGTAT+GGG | - | chr7.3:1761291-1761310 | MS.gene050575:CDS | 35.0% | |
| TGAAGGTAGAAGAAGAACAA+TGG | + | chr7.3:1760293-1760312 | None:intergenic | 35.0% | |
| TGCAAAGTAGAGCAAAGATA+CGG | + | chr7.3:1760468-1760487 | None:intergenic | 35.0% | |
| TTAGGAACAATCAAGTGGTA+TGG | - | chr7.3:1761290-1761309 | MS.gene050575:CDS | 35.0% | |
| TTCTTCTACCTTCATGTTCA+AGG | - | chr7.3:1760299-1760318 | MS.gene050575:CDS | 35.0% | |
| ! | AATCTTTAAGAAGCTGAGAG+TGG | + | chr7.3:1761382-1761401 | None:intergenic | 35.0% |
| ! | CTTGAACTTTGGAAAGGTAA+TGG | - | chr7.3:1761000-1761019 | MS.gene050575:intron | 35.0% |
| ! | GCTCTATTATAGCTTGGTTT+TGG | - | chr7.3:1761732-1761751 | MS.gene050575:CDS | 35.0% |
| !! | TTGTTTTTCCCTCTCTTCTT+AGG | - | chr7.3:1761521-1761540 | MS.gene050575:CDS | 35.0% |
| AACATACACGACATCAAGCA+AGG | + | chr7.3:1760611-1760630 | None:intergenic | 40.0% | |
| ACATACACGACATCAAGCAA+GGG | + | chr7.3:1760610-1760629 | None:intergenic | 40.0% | |
| AGACACGTTAATAGTGTCAC+AGG | + | chr7.3:1761584-1761603 | None:intergenic | 40.0% | |
| AGGTAGAAGAAGAACAATGG+TGG | + | chr7.3:1760290-1760309 | None:intergenic | 40.0% | |
| ATCTACTTCACACTTGGCAT+CGG | - | chr7.3:1760367-1760386 | MS.gene050575:CDS | 40.0% | |
| ATCTCTGTCCGGAAGAATTT+CGG | + | chr7.3:1761560-1761579 | None:intergenic | 40.0% | |
| GCTTGATGTCGTGTATGTTA+AGG | - | chr7.3:1760612-1760631 | MS.gene050575:CDS | 40.0% | |
| TCAACTGTATGGGATACCTT+AGG | - | chr7.3:1761272-1761291 | MS.gene050575:CDS | 40.0% | |
| TGTCTCTTAGGGCTTACAAA+TGG | - | chr7.3:1761599-1761618 | MS.gene050575:CDS | 40.0% | |
| TGTCTGGAGATCAACTGTAT+GGG | - | chr7.3:1761262-1761281 | MS.gene050575:CDS | 40.0% | |
| TTTGTCGTCCTTGAACATGA+AGG | + | chr7.3:1760310-1760329 | None:intergenic | 40.0% | |
| ! | AGAGATTAGCACTCTTTTGC+AGG | + | chr7.3:1761100-1761119 | None:intergenic | 40.0% |
| ! | ATGCTGGATTTGGGTTTGAA+TGG | - | chr7.3:1760931-1760950 | MS.gene050575:CDS | 40.0% |
| !! | AATGAGATTTGTGTCGGTTG+AGG | + | chr7.3:1760531-1760550 | None:intergenic | 40.0% |
| AAGCAAGGGAACTATGAGGA+GGG | + | chr7.3:1760596-1760615 | None:intergenic | 45.0% | |
| ACAAATCTCATTCCCACGTG+AGG | - | chr7.3:1760539-1760558 | MS.gene050575:CDS | 45.0% | |
| ACAATCAAGTGGTATGGGCT+CGG | - | chr7.3:1761296-1761315 | MS.gene050575:CDS | 45.0% | |
| AGGACCATTGTCGTCTTCAA+CGG | + | chr7.3:1761231-1761250 | None:intergenic | 45.0% | |
| CATCAAGCAAGGGAACTATG+AGG | + | chr7.3:1760600-1760619 | None:intergenic | 45.0% | |
| CGTGGGAATGAGATTTGTGT+CGG | + | chr7.3:1760537-1760556 | None:intergenic | 45.0% | |
| CTCCAGACAGATACTGTCAA+AGG | + | chr7.3:1761251-1761270 | None:intergenic | 45.0% | |
| CTCTTCTTAGGATGCTTGCA+CGG | - | chr7.3:1761533-1761552 | MS.gene050575:CDS | 45.0% | |
| CTGTCTGGAGATCAACTGTA+TGG | - | chr7.3:1761261-1761280 | MS.gene050575:CDS | 45.0% | |
| CTGTGATGAATGCGTTCCAT+GGG | + | chr7.3:1760402-1760421 | None:intergenic | 45.0% | |
| GCAAGCATCCTAAGAAGAGA+GGG | + | chr7.3:1761532-1761551 | None:intergenic | 45.0% | |
| GTCCTTTGACAGTATCTGTC+TGG | - | chr7.3:1761246-1761265 | MS.gene050575:CDS | 45.0% | |
| GTGACGCTTGCAATATTTCC+TGG | - | chr7.3:1761338-1761357 | MS.gene050575:CDS | 45.0% | |
| GTGTATGTTAAGGGTCGAGT+CGG | - | chr7.3:1760622-1760641 | MS.gene050575:CDS | 45.0% | |
| TGCAAGCATCCTAAGAAGAG+AGG | + | chr7.3:1761533-1761552 | None:intergenic | 45.0% | |
| TGTATGTTAAGGGTCGAGTC+GGG | - | chr7.3:1760623-1760642 | MS.gene050575:CDS | 45.0% | |
| TTCAGGTGTGGCTAATGCTT+TGG | - | chr7.3:1760687-1760706 | MS.gene050575:CDS | 45.0% | |
| TTGGTGCAGGGATCTATTCT+TGG | - | chr7.3:1760706-1760725 | MS.gene050575:CDS | 45.0% | |
| ! | CTAGAAGGTATACTGCAGTG+AGG | + | chr7.3:1761460-1761479 | None:intergenic | 45.0% |
| ! | GGGTGCTTGTTTCTTTCCTA+AGG | - | chr7.3:1761036-1761055 | MS.gene050575:intron | 45.0% |
| ! | GGTTGAGGATGATGATGATG+AGG | + | chr7.3:1760516-1760535 | None:intergenic | 45.0% |
| ! | TGCTGCAACTTCACGGTTTT+AGG | + | chr7.3:1761656-1761675 | None:intergenic | 45.0% |
| ! | TTAGTTATTGGTCTGGCTGC+TGG | - | chr7.3:1761710-1761729 | MS.gene050575:CDS | 45.0% |
| !! | CTGCTGGCTCTATTATAGCT+TGG | - | chr7.3:1761726-1761745 | MS.gene050575:CDS | 45.0% |
| ACCATTGTCGTCTTCAACGG+CGG | + | chr7.3:1761228-1761247 | None:intergenic | 50.0% | |
| ATACGGTCAACGCTTGCATC+GGG | + | chr7.3:1760451-1760470 | None:intergenic | 50.0% | |
| ATCCAACGTTGATCCTCACG+TGG | + | chr7.3:1760555-1760574 | None:intergenic | 50.0% | |
| CAAGCAAGGGAACTATGAGG+AGG | + | chr7.3:1760597-1760616 | None:intergenic | 50.0% | |
| CTCTGCATGCTGCAACTTCA+CGG | + | chr7.3:1761663-1761682 | None:intergenic | 50.0% | |
| GATACGGTCAACGCTTGCAT+CGG | + | chr7.3:1760452-1760471 | None:intergenic | 50.0% | |
| GCTGTGATGAATGCGTTCCA+TGG | + | chr7.3:1760403-1760422 | None:intergenic | 50.0% | |
| GTGTCACAGGAATCTCTGTC+CGG | + | chr7.3:1761571-1761590 | None:intergenic | 50.0% | |
| GTTTACACGCAAGATGCCTC+TGG | - | chr7.3:1761074-1761093 | MS.gene050575:intron | 50.0% | |
| TCCAACGTTGATCCTCACGT+GGG | + | chr7.3:1760554-1760573 | None:intergenic | 50.0% | |
| TGCACGGTCCGAAATTCTTC+CGG | - | chr7.3:1761549-1761568 | MS.gene050575:CDS | 50.0% | |
| ! | ACGGGTTTTACGTCACTGCT+GGG | - | chr7.3:1760653-1760672 | MS.gene050575:CDS | 50.0% |
| ! | CAGTGAGGCTTTTGCCAACA+AGG | + | chr7.3:1761445-1761464 | None:intergenic | 50.0% |
| ! | GGTCGAGTCGGGTTGTATAA+CGG | - | chr7.3:1760634-1760653 | MS.gene050575:CDS | 50.0% |
| ! | GTCGAGTCGGGTTGTATAAC+GGG | - | chr7.3:1760635-1760654 | MS.gene050575:CDS | 50.0% |
| ! | GTGGCTAATGCTTTGGTGCA+GGG | - | chr7.3:1760694-1760713 | MS.gene050575:CDS | 50.0% |
| ! | TGTGGCTAATGCTTTGGTGC+AGG | - | chr7.3:1760693-1760712 | MS.gene050575:CDS | 50.0% |
| !! | AACGGGTTTTACGTCACTGC+TGG | - | chr7.3:1760652-1760671 | MS.gene050575:CDS | 50.0% |
| !! | GCATCGGCTATTTGTTCCCA+TGG | - | chr7.3:1760383-1760402 | MS.gene050575:CDS | 50.0% |
| CAACGCTTGCATCGGGGTAA+AGG | + | chr7.3:1760444-1760463 | None:intergenic | 55.0% | |
| GGATCTATTCTTGGCTCCGC+CGG | - | chr7.3:1760715-1760734 | MS.gene050575:CDS | 55.0% | |
| GTTGCAGCATGCAGAGACTG+CGG | - | chr7.3:1761667-1761686 | MS.gene050575:CDS | 55.0% | |
| TACGGTCAACGCTTGCATCG+GGG | + | chr7.3:1760450-1760469 | None:intergenic | 55.0% | |
| TCCCACGTGAGGATCAACGT+TGG | - | chr7.3:1760550-1760569 | MS.gene050575:CDS | 55.0% | |
| TTGCAGCATGCAGAGACTGC+GGG | - | chr7.3:1761668-1761687 | MS.gene050575:CDS | 55.0% | |
| ! | AGCACTCTTTTGCAGGCCAG+AGG | + | chr7.3:1761093-1761112 | None:intergenic | 55.0% |
| ! | CGGGTTTTACGTCACTGCTG+GGG | - | chr7.3:1760654-1760673 | MS.gene050575:CDS | 55.0% |
| ! | GGCTGTTGGGATTTCAGGTG+TGG | - | chr7.3:1760675-1760694 | MS.gene050575:CDS | 55.0% |
| ACACGCAGGCGGTCATTGCT+GGG | - | chr7.3:1760755-1760774 | MS.gene050575:CDS | 60.0% | |
| ACGTCACTGCTGGGGCTGTT+GGG | - | chr7.3:1760662-1760681 | MS.gene050575:CDS | 60.0% | |
| GCCGCCGTTGAAGACGACAA+TGG | - | chr7.3:1761224-1761243 | MS.gene050575:intron | 60.0% | |
| GCTGGGGCTGTTGGGATTTC+AGG | - | chr7.3:1760670-1760689 | MS.gene050575:CDS | 60.0% | |
| GTACCTCTCCGGCAACTCAC+CGG | + | chr7.3:1760737-1760756 | None:intergenic | 60.0% | |
| TACACGCAGGCGGTCATTGC+TGG | - | chr7.3:1760754-1760773 | MS.gene050575:CDS | 60.0% | |
| TACGTCACTGCTGGGGCTGT+TGG | - | chr7.3:1760661-1760680 | MS.gene050575:CDS | 60.0% | |
| TGCAGCATGCAGAGACTGCG+GGG | - | chr7.3:1761669-1761688 | MS.gene050575:CDS | 60.0% | |
| !! | ATTGCTGGGGGTGCTGCTTC+TGG | - | chr7.3:1760769-1760788 | MS.gene050575:CDS | 60.0% |
| ACCGCCTGCGTGTACCTCTC+CGG | + | chr7.3:1760748-1760767 | None:intergenic | 65.0% | |
| ACGCAGGCGGTCATTGCTGG+GGG | - | chr7.3:1760757-1760776 | MS.gene050575:CDS | 65.0% | |
| CACGCAGGCGGTCATTGCTG+GGG | - | chr7.3:1760756-1760775 | MS.gene050575:CDS | 65.0% | |
| ! | GTTGCCGGAGAGGTACACGC+AGG | - | chr7.3:1760741-1760760 | MS.gene050575:CDS | 65.0% |
| CCTCTCCGGCAACTCACCGG+CGG | + | chr7.3:1760734-1760753 | None:intergenic | 70.0% | |
| TGGCTCCGCCGGTGAGTTGC+CGG | - | chr7.3:1760726-1760745 | MS.gene050575:CDS | 70.0% | |
| ! | GCCGGAGAGGTACACGCAGG+CGG | - | chr7.3:1760744-1760763 | MS.gene050575:CDS | 70.0% |
| CCGCCGGTGAGTTGCCGGAG+AGG | - | chr7.3:1760731-1760750 | MS.gene050575:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 1760271 | 1761763 | 1760271 | ID=MS.gene050575 |
| chr7.3 | mRNA | 1760271 | 1761763 | 1760271 | ID=MS.gene050575.t1;Parent=MS.gene050575 |
| chr7.3 | exon | 1761244 | 1761763 | 1761244 | ID=MS.gene050575.t1.exon1;Parent=MS.gene050575.t1 |
| chr7.3 | CDS | 1761244 | 1761763 | 1761244 | ID=cds.MS.gene050575.t1;Parent=MS.gene050575.t1 |
| chr7.3 | exon | 1760271 | 1760998 | 1760271 | ID=MS.gene050575.t1.exon2;Parent=MS.gene050575.t1 |
| chr7.3 | CDS | 1760271 | 1760998 | 1760271 | ID=cds.MS.gene050575.t1;Parent=MS.gene050575.t1 |
| Gene Sequence |
| Protein sequence |
