Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22871.t1 | XP_004516473.1 | 83.5 | 412 | 66 | 1 | 4 | 415 | 4 | 413 | 1.00E-183 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22871.t1 | Q8VXY7 | 65.0 | 408 | 140 | 2 | 10 | 415 | 44 | 450 | 7.3e-143 | 508.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22871.t1 | A0A1S2Z7N2 | 83.5 | 412 | 66 | 1 | 4 | 415 | 4 | 413 | 7.2e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050575 | MS.gene22871 | 0.982917 | 2.42E-156 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59641 | MS.gene22871 | PPI |
| MS.gene036759 | MS.gene22871 | PPI |
| MS.gene62397 | MS.gene22871 | PPI |
| MS.gene59944 | MS.gene22871 | PPI |
| MS.gene036758 | MS.gene22871 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22871.t1 | MTR_0003s0470 | 86.616 | 396 | 51 | 1 | 20 | 415 | 22 | 415 | 0.0 | 695 |
| MS.gene22871.t1 | MTR_3g462280 | 85.783 | 415 | 53 | 3 | 4 | 415 | 12 | 423 | 0.0 | 687 |
| MS.gene22871.t1 | MTR_4g114710 | 47.208 | 394 | 196 | 3 | 24 | 415 | 15 | 398 | 9.33e-115 | 341 |
| MS.gene22871.t1 | MTR_0008s0170 | 32.512 | 406 | 247 | 8 | 28 | 415 | 14 | 410 | 1.09e-57 | 194 |
| MS.gene22871.t1 | MTR_0008s0130 | 32.840 | 405 | 243 | 10 | 30 | 415 | 16 | 410 | 1.84e-55 | 189 |
| MS.gene22871.t1 | MTR_2g011600 | 32.203 | 413 | 237 | 11 | 30 | 415 | 23 | 419 | 2.91e-52 | 181 |
| MS.gene22871.t1 | MTR_4g050990 | 33.252 | 409 | 240 | 9 | 28 | 415 | 14 | 410 | 3.89e-51 | 177 |
| MS.gene22871.t1 | MTR_2g089520 | 33.252 | 409 | 240 | 9 | 28 | 415 | 14 | 410 | 3.89e-51 | 177 |
| MS.gene22871.t1 | MTR_2g011580 | 32.558 | 387 | 231 | 9 | 49 | 415 | 2 | 378 | 8.37e-51 | 176 |
| MS.gene22871.t1 | MTR_2g047968 | 33.092 | 414 | 241 | 11 | 24 | 415 | 11 | 410 | 5.88e-50 | 175 |
| MS.gene22871.t1 | MTR_2g011600 | 32.312 | 359 | 204 | 10 | 84 | 415 | 22 | 368 | 1.50e-44 | 159 |
| MS.gene22871.t1 | MTR_1g071120 | 30.606 | 330 | 199 | 8 | 30 | 341 | 58 | 375 | 3.80e-38 | 142 |
| MS.gene22871.t1 | MTR_8g007285 | 29.714 | 350 | 213 | 9 | 92 | 415 | 20 | 362 | 2.42e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22871.t1 | AT1G70330 | 65.865 | 416 | 139 | 2 | 2 | 415 | 36 | 450 | 0.0 | 537 |
| MS.gene22871.t1 | AT1G02630 | 47.704 | 392 | 189 | 5 | 24 | 415 | 14 | 389 | 7.47e-122 | 359 |
| MS.gene22871.t1 | AT1G02630 | 40.816 | 392 | 172 | 6 | 24 | 415 | 14 | 345 | 1.62e-91 | 280 |
| MS.gene22871.t1 | AT4G05120 | 32.203 | 413 | 238 | 11 | 28 | 415 | 17 | 412 | 1.18e-50 | 176 |
| MS.gene22871.t1 | AT4G05120 | 32.203 | 413 | 238 | 11 | 28 | 415 | 17 | 412 | 1.18e-50 | 176 |
| MS.gene22871.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 2.71e-48 | 170 |
| MS.gene22871.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 2.71e-48 | 170 |
| MS.gene22871.t1 | AT4G05110 | 31.068 | 412 | 240 | 12 | 30 | 415 | 19 | 412 | 8.06e-48 | 169 |
| MS.gene22871.t1 | AT4G05130 | 30.175 | 401 | 244 | 11 | 37 | 415 | 26 | 412 | 2.46e-47 | 167 |
| MS.gene22871.t1 | AT1G61630 | 29.684 | 411 | 253 | 9 | 28 | 415 | 15 | 412 | 5.39e-46 | 164 |
| MS.gene22871.t1 | AT4G05140 | 29.238 | 407 | 259 | 10 | 28 | 415 | 17 | 413 | 1.70e-43 | 157 |
| MS.gene22871.t1 | AT3G09990 | 29.383 | 405 | 244 | 9 | 37 | 415 | 25 | 413 | 3.33e-43 | 156 |
Find 103 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGGGCTGTTGGGATTTC+AGG | 0.094893 | 7.4:-1910897 | MS.gene22871:CDS |
| GCTCTATTATAGCTTGGTTT+TGG | 0.174004 | 7.4:-1909837 | MS.gene22871:CDS |
| ACACTATTAACGTGTCTCTT+AGG | 0.195857 | 7.4:-1909982 | MS.gene22871:CDS |
| TACACGCAGGCGGTCATTGC+TGG | 0.225351 | 7.4:-1910813 | MS.gene22871:CDS |
| AGTGTGTTCTTCTTAGTTAT+TGG | 0.230173 | 7.4:-1909871 | MS.gene22871:CDS |
| TTCATTATAGTACTTTATAA+TGG | 0.242520 | 7.4:+1910383 | None:intergenic |
| TTGGTGCAGGGATCTATTCT+TGG | 0.258857 | 7.4:-1910861 | MS.gene22871:CDS |
| TGGCTCCGCCGGTGAGTTGC+CGG | 0.310687 | 7.4:-1910841 | MS.gene22871:CDS |
| TTCTTCTACCTTCATGTTCA+AGG | 0.339199 | 7.4:-1911268 | MS.gene22871:CDS |
| ACACATTAAAGCAAGTAATA+AGG | 0.345288 | 7.4:+1910154 | None:intergenic |
| ATCTCTGTCCGGAAGAATTT+CGG | 0.346613 | 7.4:+1910012 | None:intergenic |
| TTAGTTATTGGTCTGGCTGC+TGG | 0.347855 | 7.4:-1909859 | MS.gene22871:CDS |
| AAGCAAGTAATAAGGAGAAT+TGG | 0.349646 | 7.4:+1910162 | None:intergenic |
| ACGTCACTGCTGGGGCTGTT+GGG | 0.361788 | 7.4:-1910905 | MS.gene22871:CDS |
| TACGTCACTGCTGGGGCTGT+TGG | 0.363518 | 7.4:-1910906 | MS.gene22871:CDS |
| CTTGATGTCGTGTATGTTAA+GGG | 0.366056 | 7.4:-1910954 | MS.gene22871:CDS |
| TTTAATGTGTTTGACCTTGT+TGG | 0.367568 | 7.4:-1910141 | MS.gene22871:CDS |
| CTCTGCATGCTGCAACTTCA+CGG | 0.371199 | 7.4:+1909909 | None:intergenic |
| CTATAATGAACTTAAGATTC+AGG | 0.375812 | 7.4:-1910370 | MS.gene22871:CDS |
| TTCAGGTGTGGCTAATGCTT+TGG | 0.388115 | 7.4:-1910880 | MS.gene22871:CDS |
| ATACGGTCAACGCTTGCATC+GGG | 0.388734 | 7.4:+1911119 | None:intergenic |
| TCATTATAGTACTTTATAAT+GGG | 0.388994 | 7.4:+1910384 | None:intergenic |
| ACTCTCAGCTTCTTAAAGAT+TGG | 0.396591 | 7.4:-1910188 | MS.gene22871:CDS |
| ACACGCAGGCGGTCATTGCT+GGG | 0.398252 | 7.4:-1910812 | MS.gene22871:CDS |
| TGCACGGTCCGAAATTCTTC+CGG | 0.401715 | 7.4:-1910020 | MS.gene22871:CDS |
| CTGCTGGCTCTATTATAGCT+TGG | 0.403267 | 7.4:-1909843 | MS.gene22871:CDS |
| GTCGAGTCGGGTTGTATAAC+GGG | 0.404515 | 7.4:-1910932 | MS.gene22871:CDS |
| GTGACGCTTGCAATATTTCC+TGG | 0.410311 | 7.4:-1910231 | MS.gene22871:CDS |
| GGGTGCTTGTTTCTTTCCTA+AGG | 0.415931 | 7.4:-1910533 | MS.gene22871:CDS |
| CACTATTAACGTGTCTCTTA+GGG | 0.428475 | 7.4:-1909981 | MS.gene22871:CDS |
| GTTCTTCTTAGTTATTGGTC+TGG | 0.429994 | 7.4:-1909866 | MS.gene22871:CDS |
| CTGTCTGGAGATCAACTGTA+TGG | 0.434174 | 7.4:-1910308 | MS.gene22871:CDS |
| GGTCGAGTCGGGTTGTATAA+CGG | 0.441509 | 7.4:-1910933 | MS.gene22871:CDS |
| GCTTGATGTCGTGTATGTTA+AGG | 0.447841 | 7.4:-1910955 | MS.gene22871:CDS |
| GTCCTTTGACAGTATCTGTC+TGG | 0.460668 | 7.4:-1910323 | MS.gene22871:CDS |
| GCATCGGCTATTTGTTCCCA+TGG | 0.462726 | 7.4:-1911184 | MS.gene22871:CDS |
| CAACGCTTGCATCGGGGTAA+AGG | 0.467006 | 7.4:+1911126 | None:intergenic |
| ATACCACTTGATTGTTCCTA+AGG | 0.474334 | 7.4:+1910281 | None:intergenic |
| TGTGGCTAATGCTTTGGTGC+AGG | 0.485275 | 7.4:-1910874 | MS.gene22871:CDS |
| CACGCAGGCGGTCATTGCTG+GGG | 0.489338 | 7.4:-1910811 | MS.gene22871:CDS |
| AGAAAGTAGCAGAAGACAAA+TGG | 0.493821 | 7.4:-1911238 | MS.gene22871:CDS |
| TTAGGAACAATCAAGTGGTA+TGG | 0.496112 | 7.4:-1910279 | MS.gene22871:CDS |
| ACCATTGTCGTCTTCAACGG+CGG | 0.502286 | 7.4:+1910344 | None:intergenic |
| GTTTACACGCAAGATGCCTC+TGG | 0.510856 | 7.4:-1910495 | MS.gene22871:CDS |
| TTGCAGCATGCAGAGACTGC+GGG | 0.517119 | 7.4:-1909901 | MS.gene22871:CDS |
| TGTCTCTTAGGGCTTACAAA+TGG | 0.520478 | 7.4:-1909970 | MS.gene22871:CDS |
| TGCAAGCATCCTAAGAAGAG+AGG | 0.520652 | 7.4:+1910039 | None:intergenic |
| AATGAGATTTGTGTCGGTTG+AGG | 0.521136 | 7.4:+1911039 | None:intergenic |
| CTCTTCTTAGGATGCTTGCA+CGG | 0.521892 | 7.4:-1910036 | MS.gene22871:CDS |
| TGTATGTTAAGGGTCGAGTC+GGG | 0.521957 | 7.4:-1910944 | MS.gene22871:CDS |
| ACAATCAAGTGGTATGGGCT+CGG | 0.529311 | 7.4:-1910273 | MS.gene22871:CDS |
| ACCGCCTGCGTGTACCTCTC+CGG | 0.532675 | 7.4:+1910822 | None:intergenic |
| GGCTGTTGGGATTTCAGGTG+TGG | 0.535654 | 7.4:-1910892 | MS.gene22871:CDS |
| AAATCATCAATACACTGGTA+AGG | 0.536010 | 7.4:+1909944 | None:intergenic |
| TCAACTGTATGGGATACCTT+AGG | 0.538806 | 7.4:-1910297 | MS.gene22871:CDS |
| TGTGATTATGTTCATATGCA+TGG | 0.539930 | 7.4:-1910433 | MS.gene22871:CDS |
| GATACGGTCAACGCTTGCAT+CGG | 0.540085 | 7.4:+1911118 | None:intergenic |
| GTGTATGTTAAGGGTCGAGT+CGG | 0.540507 | 7.4:-1910945 | MS.gene22871:CDS |
| GGATCTATTCTTGGCTCCGC+CGG | 0.541157 | 7.4:-1910852 | MS.gene22871:CDS |
| ATCTACTTCACACTTGGCAT+CGG | 0.551559 | 7.4:-1911200 | MS.gene22871:CDS |
| TTTGTCGTCCTTGAACATGA+AGG | 0.552481 | 7.4:+1911260 | None:intergenic |
| TAGGAACAATCAAGTGGTAT+GGG | 0.556979 | 7.4:-1910278 | MS.gene22871:CDS |
| GTGGCTAATGCTTTGGTGCA+GGG | 0.564289 | 7.4:-1910873 | MS.gene22871:CDS |
| AGACACGTTAATAGTGTCAC+AGG | 0.565534 | 7.4:+1909988 | None:intergenic |
| AGGACCATTGTCGTCTTCAA+CGG | 0.572794 | 7.4:+1910341 | None:intergenic |
| AACATACACGACATCAAGCA+AGG | 0.573774 | 7.4:+1910959 | None:intergenic |
| GTGTCACAGGAATCTCTGTC+CGG | 0.575678 | 7.4:+1910001 | None:intergenic |
| GTACCTCTCCGGCAACTCAC+CGG | 0.590223 | 7.4:+1910833 | None:intergenic |
| AGCTAAAATCATCAATACAC+TGG | 0.598738 | 7.4:+1909939 | None:intergenic |
| TGCAAAGTAGAGCAAAGATA+CGG | 0.603721 | 7.4:+1911102 | None:intergenic |
| ACATCTTCTGTAATGTAACC+AGG | 0.604109 | 7.4:+1910213 | None:intergenic |
| ACGCAGGCGGTCATTGCTGG+GGG | 0.609305 | 7.4:-1910810 | MS.gene22871:CDS |
| TATATAATCTACTTCACACT+TGG | 0.609971 | 7.4:-1911206 | MS.gene22871:CDS |
| GTTGCAGCATGCAGAGACTG+CGG | 0.611240 | 7.4:-1909902 | MS.gene22871:CDS |
| AGGTAGAAGAAGAACAATGG+TGG | 0.611992 | 7.4:+1911280 | None:intergenic |
| CTGTGATGAATGCGTTCCAT+GGG | 0.612636 | 7.4:+1911168 | None:intergenic |
| TGTCTGGAGATCAACTGTAT+GGG | 0.613864 | 7.4:-1910307 | MS.gene22871:CDS |
| GCAAGCATCCTAAGAAGAGA+GGG | 0.616215 | 7.4:+1910040 | None:intergenic |
| GCTGTGATGAATGCGTTCCA+TGG | 0.616389 | 7.4:+1911167 | None:intergenic |
| CGTGGGAATGAGATTTGTGT+CGG | 0.618153 | 7.4:+1911033 | None:intergenic |
| AATCTTTAAGAAGCTGAGAG+TGG | 0.626615 | 7.4:+1910190 | None:intergenic |
| CCTCTCCGGCAACTCACCGG+CGG | 0.634884 | 7.4:+1910836 | None:intergenic |
| CTCCAGACAGATACTGTCAA+AGG | 0.635770 | 7.4:+1910321 | None:intergenic |
| AAGCAAGGGAACTATGAGGA+GGG | 0.636359 | 7.4:+1910974 | None:intergenic |
| ATCCAACGTTGATCCTCACG+TGG | 0.642546 | 7.4:+1911015 | None:intergenic |
| CCGCCGGTGAGTTGCCGGAG+AGG | 0.644765 | 7.4:-1910836 | MS.gene22871:CDS |
| AAGGTAAGAGAAGTAATCAA+CGG | 0.645014 | 7.4:+1911145 | None:intergenic |
| CAAGCAAGGGAACTATGAGG+AGG | 0.646036 | 7.4:+1910973 | None:intergenic |
| CATCAAGCAAGGGAACTATG+AGG | 0.650180 | 7.4:+1910970 | None:intergenic |
| GCCGGAGAGGTACACGCAGG+CGG | 0.656282 | 7.4:-1910823 | MS.gene22871:CDS |
| ACATACACGACATCAAGCAA+GGG | 0.657824 | 7.4:+1910960 | None:intergenic |
| TCCCACGTGAGGATCAACGT+TGG | 0.661083 | 7.4:-1911017 | MS.gene22871:CDS |
| TGAAGGTAGAAGAAGAACAA+TGG | 0.668431 | 7.4:+1911277 | None:intergenic |
| ACAAATCTCATTCCCACGTG+AGG | 0.669174 | 7.4:-1911028 | MS.gene22871:CDS |
| TGCAGCATGCAGAGACTGCG+GGG | 0.670996 | 7.4:-1909900 | MS.gene22871:CDS |
| TACGGTCAACGCTTGCATCG+GGG | 0.672941 | 7.4:+1911120 | None:intergenic |
| ATACCTTAGGAACAATCAAG+TGG | 0.685947 | 7.4:-1910284 | MS.gene22871:CDS |
| GGTTGAGGATGATGATGATG+AGG | 0.690333 | 7.4:+1911054 | None:intergenic |
| GCCGCCGTTGAAGACGACAA+TGG | 0.692231 | 7.4:-1910345 | MS.gene22871:CDS |
| TAATGAACTTAAGATTCAGG+CGG | 0.703355 | 7.4:-1910367 | MS.gene22871:CDS |
| TCCAACGTTGATCCTCACGT+GGG | 0.722026 | 7.4:+1911016 | None:intergenic |
| GTTGCCGGAGAGGTACACGC+AGG | 0.746866 | 7.4:-1910826 | MS.gene22871:CDS |
| CTAGAAGGTATACTGCAGTG+AGG | 0.762315 | 7.4:+1910112 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATAGTACTTTATAAT+GGG | + | chr7.4:1910743-1910762 | None:intergenic | 15.0% |
| !! | TTCATTATAGTACTTTATAA+TGG | + | chr7.4:1910744-1910763 | None:intergenic | 15.0% |
| !! | GAAAGAAAAAAAAAAGAAGA+AGG | + | chr7.4:1910362-1910381 | None:intergenic | 20.0% |
| ! | ACACATTAAAGCAAGTAATA+AGG | + | chr7.4:1910973-1910992 | None:intergenic | 25.0% |
| ! | AGTAAAACATGATATGAGAA+TGG | + | chr7.4:1910429-1910448 | None:intergenic | 25.0% |
| ! | CTATAATGAACTTAAGATTC+AGG | - | chr7.4:1910754-1910773 | MS.gene22871:intron | 25.0% |
| ! | GTAAAACATGATATGAGAAT+GGG | + | chr7.4:1910428-1910447 | None:intergenic | 25.0% |
| ! | TATATAATCTACTTCACACT+TGG | - | chr7.4:1909918-1909937 | MS.gene22871:CDS | 25.0% |
| ! | TGAATGGAAAATAATGTGTA+AGG | - | chr7.4:1910501-1910520 | MS.gene22871:CDS | 25.0% |
| !! | GTAAATGGTTTTTCATTTCA+GGG | - | chr7.4:1910570-1910589 | MS.gene22871:intron | 25.0% |
| !! | TAAATGGTTTTTCATTTCAG+GGG | - | chr7.4:1910571-1910590 | MS.gene22871:intron | 25.0% |
| !!! | TTTTTTTCTTTCCCTACTTT+TGG | - | chr7.4:1910370-1910389 | MS.gene22871:CDS | 25.0% |
| AAATCATCAATACACTGGTA+AGG | + | chr7.4:1911183-1911202 | None:intergenic | 30.0% | |
| AAGCAAGTAATAAGGAGAAT+TGG | + | chr7.4:1910965-1910984 | None:intergenic | 30.0% | |
| AAGGTAAGAGAAGTAATCAA+CGG | + | chr7.4:1909982-1910001 | None:intergenic | 30.0% | |
| AGCTAAAATCATCAATACAC+TGG | + | chr7.4:1911188-1911207 | None:intergenic | 30.0% | |
| AGTGTGTTCTTCTTAGTTAT+TGG | - | chr7.4:1911253-1911272 | MS.gene22871:CDS | 30.0% | |
| GAGAATGCAAAAATTGCAAT+CGG | - | chr7.4:1911034-1911053 | MS.gene22871:CDS | 30.0% | |
| TAATGAACTTAAGATTCAGG+CGG | - | chr7.4:1910757-1910776 | MS.gene22871:intron | 30.0% | |
| TGTGATTATGTTCATATGCA+TGG | - | chr7.4:1910691-1910710 | MS.gene22871:intron | 30.0% | |
| TTTAATGTGTTTGACCTTGT+TGG | - | chr7.4:1910983-1911002 | MS.gene22871:CDS | 30.0% | |
| ! | ATTGCTTGTTTCTTGAACTT+TGG | - | chr7.4:1910543-1910562 | MS.gene22871:intron | 30.0% |
| ! | CAATTTTTGCATTCTCTAGA+AGG | + | chr7.4:1911030-1911049 | None:intergenic | 30.0% |
| ! | CAGCTTTTGTAAATATCCTT+AGG | + | chr7.4:1910610-1910629 | None:intergenic | 30.0% |
| ! | GGTAAATGGTTTTTCATTTC+AGG | - | chr7.4:1910569-1910588 | MS.gene22871:intron | 30.0% |
| ! | TTGAACTTTGGAAAGGTAAA+TGG | - | chr7.4:1910555-1910574 | MS.gene22871:intron | 30.0% |
| ! | TTGTTTCTTGAACTTTGGAA+AGG | - | chr7.4:1910548-1910567 | MS.gene22871:intron | 30.0% |
| !! | CTCTATTATAGCTTGGTTTT+GGG | - | chr7.4:1911288-1911307 | MS.gene22871:CDS | 30.0% |
| !!! | AGTTTTTTGTATGCTGGATT+TGG | - | chr7.4:1910475-1910494 | MS.gene22871:CDS | 30.0% |
| !!! | GCAAATAGTTTTTTGTATGC+TGG | - | chr7.4:1910469-1910488 | MS.gene22871:CDS | 30.0% |
| !!! | GTTTTTTGTATGCTGGATTT+GGG | - | chr7.4:1910476-1910495 | MS.gene22871:CDS | 30.0% |
| ACACAACTTCAACCAAAAGT+AGG | + | chr7.4:1910385-1910404 | None:intergenic | 35.0% | |
| ACACTATTAACGTGTCTCTT+AGG | - | chr7.4:1911142-1911161 | MS.gene22871:CDS | 35.0% | |
| ACATCTTCTGTAATGTAACC+AGG | + | chr7.4:1910914-1910933 | None:intergenic | 35.0% | |
| ACTCTCAGCTTCTTAAAGAT+TGG | - | chr7.4:1910936-1910955 | MS.gene22871:CDS | 35.0% | |
| AGAAAGTAGCAGAAGACAAA+TGG | - | chr7.4:1909886-1909905 | MS.gene22871:CDS | 35.0% | |
| ATACCACTTGATTGTTCCTA+AGG | + | chr7.4:1910846-1910865 | None:intergenic | 35.0% | |
| ATACCTTAGGAACAATCAAG+TGG | - | chr7.4:1910840-1910859 | MS.gene22871:CDS | 35.0% | |
| CACAACTTCAACCAAAAGTA+GGG | + | chr7.4:1910384-1910403 | None:intergenic | 35.0% | |
| CACTATTAACGTGTCTCTTA+GGG | - | chr7.4:1911143-1911162 | MS.gene22871:CDS | 35.0% | |
| CTTGATGTCGTGTATGTTAA+GGG | - | chr7.4:1910170-1910189 | MS.gene22871:CDS | 35.0% | |
| GTTCTTCTTAGTTATTGGTC+TGG | - | chr7.4:1911258-1911277 | MS.gene22871:CDS | 35.0% | |
| TAGGAACAATCAAGTGGTAT+GGG | - | chr7.4:1910846-1910865 | MS.gene22871:CDS | 35.0% | |
| TGAAGGTAGAAGAAGAACAA+TGG | + | chr7.4:1909850-1909869 | None:intergenic | 35.0% | |
| TGCAAAGTAGAGCAAAGATA+CGG | + | chr7.4:1910025-1910044 | None:intergenic | 35.0% | |
| TTAGGAACAATCAAGTGGTA+TGG | - | chr7.4:1910845-1910864 | MS.gene22871:CDS | 35.0% | |
| TTCTTCTACCTTCATGTTCA+AGG | - | chr7.4:1909856-1909875 | MS.gene22871:CDS | 35.0% | |
| ! | AATCTTTAAGAAGCTGAGAG+TGG | + | chr7.4:1910937-1910956 | None:intergenic | 35.0% |
| ! | GCTCTATTATAGCTTGGTTT+TGG | - | chr7.4:1911287-1911306 | MS.gene22871:CDS | 35.0% |
| !! | TTGTTTTTCCCTCTCTTCTT+AGG | - | chr7.4:1911076-1911095 | MS.gene22871:CDS | 35.0% |
| AACATACACGACATCAAGCA+AGG | + | chr7.4:1910168-1910187 | None:intergenic | 40.0% | |
| ACATACACGACATCAAGCAA+GGG | + | chr7.4:1910167-1910186 | None:intergenic | 40.0% | |
| AGACACGTTAATAGTGTCAC+AGG | + | chr7.4:1911139-1911158 | None:intergenic | 40.0% | |
| AGGTAGAAGAAGAACAATGG+TGG | + | chr7.4:1909847-1909866 | None:intergenic | 40.0% | |
| ATCTACTTCACACTTGGCAT+CGG | - | chr7.4:1909924-1909943 | MS.gene22871:CDS | 40.0% | |
| ATCTCTGTCCGGAAGAATTT+CGG | + | chr7.4:1911115-1911134 | None:intergenic | 40.0% | |
| GCTTGATGTCGTGTATGTTA+AGG | - | chr7.4:1910169-1910188 | MS.gene22871:CDS | 40.0% | |
| TCAACTGTATGGGATACCTT+AGG | - | chr7.4:1910827-1910846 | MS.gene22871:CDS | 40.0% | |
| TGTCTCTTAGGGCTTACAAA+TGG | - | chr7.4:1911154-1911173 | MS.gene22871:CDS | 40.0% | |
| TGTCTGGAGATCAACTGTAT+GGG | - | chr7.4:1910817-1910836 | MS.gene22871:CDS | 40.0% | |
| TTTGTCGTCCTTGAACATGA+AGG | + | chr7.4:1909867-1909886 | None:intergenic | 40.0% | |
| ! | AGAGATTAGCACTCTTTTGC+AGG | + | chr7.4:1910655-1910674 | None:intergenic | 40.0% |
| ! | ATGCTGGATTTGGGTTTGAA+TGG | - | chr7.4:1910485-1910504 | MS.gene22871:CDS | 40.0% |
| !! | AATGAGATTTGTGTCGGTTG+AGG | + | chr7.4:1910088-1910107 | None:intergenic | 40.0% |
| AAGCAAGGGAACTATGAGGA+GGG | + | chr7.4:1910153-1910172 | None:intergenic | 45.0% | |
| ACAAATCTCATTCCCACGTG+AGG | - | chr7.4:1910096-1910115 | MS.gene22871:CDS | 45.0% | |
| ACAATCAAGTGGTATGGGCT+CGG | - | chr7.4:1910851-1910870 | MS.gene22871:CDS | 45.0% | |
| AGGACCATTGTCGTCTTCAA+CGG | + | chr7.4:1910786-1910805 | None:intergenic | 45.0% | |
| CATCAAGCAAGGGAACTATG+AGG | + | chr7.4:1910157-1910176 | None:intergenic | 45.0% | |
| CGTGGGAATGAGATTTGTGT+CGG | + | chr7.4:1910094-1910113 | None:intergenic | 45.0% | |
| CTCCAGACAGATACTGTCAA+AGG | + | chr7.4:1910806-1910825 | None:intergenic | 45.0% | |
| CTCTTCTTAGGATGCTTGCA+CGG | - | chr7.4:1911088-1911107 | MS.gene22871:CDS | 45.0% | |
| CTGTCTGGAGATCAACTGTA+TGG | - | chr7.4:1910816-1910835 | MS.gene22871:CDS | 45.0% | |
| CTGTGATGAATGCGTTCCAT+GGG | + | chr7.4:1909959-1909978 | None:intergenic | 45.0% | |
| GCAAGCATCCTAAGAAGAGA+GGG | + | chr7.4:1911087-1911106 | None:intergenic | 45.0% | |
| GTCCTTTGACAGTATCTGTC+TGG | - | chr7.4:1910801-1910820 | MS.gene22871:CDS | 45.0% | |
| GTGACGCTTGCAATATTTCC+TGG | - | chr7.4:1910893-1910912 | MS.gene22871:CDS | 45.0% | |
| GTGTATGTTAAGGGTCGAGT+CGG | - | chr7.4:1910179-1910198 | MS.gene22871:CDS | 45.0% | |
| TGCAAGCATCCTAAGAAGAG+AGG | + | chr7.4:1911088-1911107 | None:intergenic | 45.0% | |
| TGTATGTTAAGGGTCGAGTC+GGG | - | chr7.4:1910180-1910199 | MS.gene22871:CDS | 45.0% | |
| TTCAGGTGTGGCTAATGCTT+TGG | - | chr7.4:1910244-1910263 | MS.gene22871:CDS | 45.0% | |
| TTGGTGCAGGGATCTATTCT+TGG | - | chr7.4:1910263-1910282 | MS.gene22871:CDS | 45.0% | |
| ! | CTAGAAGGTATACTGCAGTG+AGG | + | chr7.4:1911015-1911034 | None:intergenic | 45.0% |
| ! | GGGTGCTTGTTTCTTTCCTA+AGG | - | chr7.4:1910591-1910610 | MS.gene22871:intron | 45.0% |
| ! | GGTTGAGGATGATGATGATG+AGG | + | chr7.4:1910073-1910092 | None:intergenic | 45.0% |
| ! | TGCTGCAACTTCACGGTTTT+AGG | + | chr7.4:1911211-1911230 | None:intergenic | 45.0% |
| ! | TTAGTTATTGGTCTGGCTGC+TGG | - | chr7.4:1911265-1911284 | MS.gene22871:CDS | 45.0% |
| !! | CTGCTGGCTCTATTATAGCT+TGG | - | chr7.4:1911281-1911300 | MS.gene22871:CDS | 45.0% |
| ACCATTGTCGTCTTCAACGG+CGG | + | chr7.4:1910783-1910802 | None:intergenic | 50.0% | |
| ATACGGTCAACGCTTGCATC+GGG | + | chr7.4:1910008-1910027 | None:intergenic | 50.0% | |
| ATCCAACGTTGATCCTCACG+TGG | + | chr7.4:1910112-1910131 | None:intergenic | 50.0% | |
| CAAGCAAGGGAACTATGAGG+AGG | + | chr7.4:1910154-1910173 | None:intergenic | 50.0% | |
| CTCTGCATGCTGCAACTTCA+CGG | + | chr7.4:1911218-1911237 | None:intergenic | 50.0% | |
| GATACGGTCAACGCTTGCAT+CGG | + | chr7.4:1910009-1910028 | None:intergenic | 50.0% | |
| GCTGTGATGAATGCGTTCCA+TGG | + | chr7.4:1909960-1909979 | None:intergenic | 50.0% | |
| GTGTCACAGGAATCTCTGTC+CGG | + | chr7.4:1911126-1911145 | None:intergenic | 50.0% | |
| GTTTACACGCAAGATGCCTC+TGG | - | chr7.4:1910629-1910648 | MS.gene22871:intron | 50.0% | |
| TCCAACGTTGATCCTCACGT+GGG | + | chr7.4:1910111-1910130 | None:intergenic | 50.0% | |
| TGCACGGTCCGAAATTCTTC+CGG | - | chr7.4:1911104-1911123 | MS.gene22871:CDS | 50.0% | |
| ! | ACGGGTTTTACGTCACTGCT+GGG | - | chr7.4:1910210-1910229 | MS.gene22871:CDS | 50.0% |
| ! | CAGTGAGGCTTTTGCCAACA+AGG | + | chr7.4:1911000-1911019 | None:intergenic | 50.0% |
| ! | GGTCGAGTCGGGTTGTATAA+CGG | - | chr7.4:1910191-1910210 | MS.gene22871:CDS | 50.0% |
| ! | GTCGAGTCGGGTTGTATAAC+GGG | - | chr7.4:1910192-1910211 | MS.gene22871:CDS | 50.0% |
| ! | GTGGCTAATGCTTTGGTGCA+GGG | - | chr7.4:1910251-1910270 | MS.gene22871:CDS | 50.0% |
| ! | TGTGGCTAATGCTTTGGTGC+AGG | - | chr7.4:1910250-1910269 | MS.gene22871:CDS | 50.0% |
| !! | AACGGGTTTTACGTCACTGC+TGG | - | chr7.4:1910209-1910228 | MS.gene22871:CDS | 50.0% |
| !! | GCATCGGCTATTTGTTCCCA+TGG | - | chr7.4:1909940-1909959 | MS.gene22871:CDS | 50.0% |
| CAACGCTTGCATCGGGGTAA+AGG | + | chr7.4:1910001-1910020 | None:intergenic | 55.0% | |
| GGATCTATTCTTGGCTCCGC+CGG | - | chr7.4:1910272-1910291 | MS.gene22871:CDS | 55.0% | |
| GTTGCAGCATGCAGAGACTG+CGG | - | chr7.4:1911222-1911241 | MS.gene22871:CDS | 55.0% | |
| TACGGTCAACGCTTGCATCG+GGG | + | chr7.4:1910007-1910026 | None:intergenic | 55.0% | |
| TCCCACGTGAGGATCAACGT+TGG | - | chr7.4:1910107-1910126 | MS.gene22871:CDS | 55.0% | |
| TTGCAGCATGCAGAGACTGC+GGG | - | chr7.4:1911223-1911242 | MS.gene22871:CDS | 55.0% | |
| ! | AGCACTCTTTTGCAGGCCAG+AGG | + | chr7.4:1910648-1910667 | None:intergenic | 55.0% |
| ! | CGGGTTTTACGTCACTGCTG+GGG | - | chr7.4:1910211-1910230 | MS.gene22871:CDS | 55.0% |
| ! | GGCTGTTGGGATTTCAGGTG+TGG | - | chr7.4:1910232-1910251 | MS.gene22871:CDS | 55.0% |
| ACACGCAGGCGGTCATTGCT+GGG | - | chr7.4:1910312-1910331 | MS.gene22871:CDS | 60.0% | |
| ACGTCACTGCTGGGGCTGTT+GGG | - | chr7.4:1910219-1910238 | MS.gene22871:CDS | 60.0% | |
| GCCGCCGTTGAAGACGACAA+TGG | - | chr7.4:1910779-1910798 | MS.gene22871:intron | 60.0% | |
| GCTGGGGCTGTTGGGATTTC+AGG | - | chr7.4:1910227-1910246 | MS.gene22871:CDS | 60.0% | |
| GTACCTCTCCGGCAACTCAC+CGG | + | chr7.4:1910294-1910313 | None:intergenic | 60.0% | |
| TACACGCAGGCGGTCATTGC+TGG | - | chr7.4:1910311-1910330 | MS.gene22871:CDS | 60.0% | |
| TACGTCACTGCTGGGGCTGT+TGG | - | chr7.4:1910218-1910237 | MS.gene22871:CDS | 60.0% | |
| TGCAGCATGCAGAGACTGCG+GGG | - | chr7.4:1911224-1911243 | MS.gene22871:CDS | 60.0% | |
| !! | ATTGCTGGGGGTGCTGCTTC+TGG | - | chr7.4:1910326-1910345 | MS.gene22871:CDS | 60.0% |
| ACCGCCTGCGTGTACCTCTC+CGG | + | chr7.4:1910305-1910324 | None:intergenic | 65.0% | |
| ACGCAGGCGGTCATTGCTGG+GGG | - | chr7.4:1910314-1910333 | MS.gene22871:CDS | 65.0% | |
| CACGCAGGCGGTCATTGCTG+GGG | - | chr7.4:1910313-1910332 | MS.gene22871:CDS | 65.0% | |
| ! | GTTGCCGGAGAGGTACACGC+AGG | - | chr7.4:1910298-1910317 | MS.gene22871:CDS | 65.0% |
| CCTCTCCGGCAACTCACCGG+CGG | + | chr7.4:1910291-1910310 | None:intergenic | 70.0% | |
| TGGCTCCGCCGGTGAGTTGC+CGG | - | chr7.4:1910283-1910302 | MS.gene22871:CDS | 70.0% | |
| ! | GCCGGAGAGGTACACGCAGG+CGG | - | chr7.4:1910301-1910320 | MS.gene22871:CDS | 70.0% |
| CCGCCGGTGAGTTGCCGGAG+AGG | - | chr7.4:1910288-1910307 | MS.gene22871:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1909828 | 1911318 | 1909828 | ID=MS.gene22871 |
| chr7.4 | mRNA | 1909828 | 1911318 | 1909828 | ID=MS.gene22871.t1;Parent=MS.gene22871 |
| chr7.4 | exon | 1910799 | 1911318 | 1910799 | ID=MS.gene22871.t1.exon1;Parent=MS.gene22871.t1 |
| chr7.4 | CDS | 1910799 | 1911318 | 1910799 | ID=cds.MS.gene22871.t1;Parent=MS.gene22871.t1 |
| chr7.4 | exon | 1909828 | 1910555 | 1909828 | ID=MS.gene22871.t1.exon2;Parent=MS.gene22871.t1 |
| chr7.4 | CDS | 1909828 | 1910555 | 1909828 | ID=cds.MS.gene22871.t1;Parent=MS.gene22871.t1 |
| Gene Sequence |
| Protein sequence |
