AlfalfaGEDB | MS.gene072561

M. sativa cultivar XinJiangDaYe / MS.gene072561

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005516
PFAM: PF07887.14 PF20451.1 PF20452.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072561.t1	XP_013450447.1	90.2	583	44	6	1	579	1	574	3.30E-294	1020.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072561.t1	F4K2R6	39.2	339	183	8	57	386	37	361	2.3e-54	214.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072561.t1	A0A072UFA8	90.2	583	44	6	1	579	1	574	2.4e-294	1020.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene072561	0.842749	2.14E-58	-1.69E-46
MS.gene049254	MS.gene072561	0.804382	2.22E-49	-1.69E-46
MS.gene049404	MS.gene072561	0.810467	1.14E-50	-1.69E-46
MS.gene049435	MS.gene072561	0.823075	1.68E-53	-1.69E-46
MS.gene049452	MS.gene072561	0.839266	1.76E-57	-1.69E-46
MS.gene049850	MS.gene072561	0.808944	2.41E-50	-1.69E-46
MS.gene049958	MS.gene072561	0.808854	2.52E-50	-1.69E-46
MS.gene049983	MS.gene072561	0.829075	6.30E-55	-1.69E-46
MS.gene050442	MS.gene072561	0.857701	1.36E-62	-1.69E-46
MS.gene050654	MS.gene072561	0.806269	8.93E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072561.t1	MTR_7g111980	90.223	583	44	6	1	579	1	574	0.0	1040
MS.gene072561.t1	MTR_7g111980	93.279	491	32	1	90	579	1	491	0.0	921
MS.gene072561.t1	MTR_7g111960	59.797	592	192	14	1	577	1	561	0.0	622
MS.gene072561.t1	MTR_7g112000	47.104	518	232	13	62	571	41	524	3.81e-131	394
MS.gene072561.t1	MTR_2g450080	29.091	550	332	15	64	571	53	586	3.38e-52	188
MS.gene072561.t1	MTR_8g104490	33.333	417	236	13	65	450	50	455	1.03e-51	185
MS.gene072561.t1	MTR_6g083730	34.604	341	202	8	61	387	48	381	7.40e-51	182
MS.gene072561.t1	MTR_4g090970	35.224	335	198	8	64	385	54	382	3.25e-50	183
MS.gene072561.t1	MTR_4g106810	28.782	542	322	19	65	577	40	546	1.67e-48	177
MS.gene072561.t1	MTR_8g104510	35.484	341	191	10	65	387	50	379	1.74e-48	176

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072561.t1	AT5G26920	39.233	339	183	8	57	386	37	361	2.59e-65	219
MS.gene072561.t1	AT5G26920	34.222	450	244	14	61	493	41	455	1.27e-64	221
MS.gene072561.t1	AT5G26920	33.630	449	240	14	61	493	41	447	1.45e-61	213
MS.gene072561.t1	AT5G57580	36.391	338	194	8	64	386	50	381	2.60e-56	201
MS.gene072561.t1	AT4G25800	36.202	337	196	8	64	386	39	370	4.09e-55	196
MS.gene072561.t1	AT4G25800	36.202	337	196	8	64	386	39	370	4.09e-55	196
MS.gene072561.t1	AT2G24300	35.821	335	197	8	65	386	51	380	3.43e-51	186
MS.gene072561.t1	AT2G24300	35.821	335	197	8	65	386	47	376	3.53e-51	186
MS.gene072561.t1	AT4G31000	29.944	531	324	18	64	571	50	555	6.12e-49	179
MS.gene072561.t1	AT2G24300	37.288	295	175	7	97	386	40	329	2.88e-48	177

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Find 117 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACATACGGAAATAAA+AGG	0.316297	7.3:-4451467	None:intergenic
AAAAGAGGATTGGACAGCTG+AGG	0.645437	7.3:+4453420	MS.gene072561:CDS
AAACAAGTTTGCATTCTTCT+TGG	0.267253	7.3:-4455747	None:intergenic
AAACGGTCAATTTCGGCTAG+GGG	0.604248	7.3:+4453576	MS.gene072561:CDS
AAAGCAGTGTGGTGTAAGGT+TGG	0.498718	7.3:+4455680	MS.gene072561:CDS
AAAGTCCAGGATCAAAGCTG+AGG	0.634583	7.3:+4453285	MS.gene072561:CDS
AAATCAGCAACGCGTAGTCA+TGG	0.550182	7.3:+4453345	MS.gene072561:CDS
AACAGTTTGTATTCCATGAG+AGG	0.541937	7.3:-4453892	None:intergenic
AAGAGACATACCTTGGGTTT+AGG	0.317099	7.3:-4451798	None:intergenic
AAGCAGTGTGGTGTAAGGTT+GGG	0.517845	7.3:+4455681	MS.gene072561:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAGTTTGCATTCTTCT+TGG	-	chr7.3:4455750-4455769	None:intergenic	30.0%
AAGCGAATAAAACAACATCA+TGG	+	chr7.3:4451411-4451430	MS.gene072561:CDS	30.0%
ACATATGAAGTAGAGATACA+TGG	-	chr7.3:4455365-4455384	None:intergenic	30.0%
AGCGAATAAAACAACATCAT+GGG	+	chr7.3:4451412-4451431	MS.gene072561:CDS	30.0%
AGGAATTGAGGATATTAACA+TGG	-	chr7.3:4455631-4455650	None:intergenic	30.0%
ATATATCCATAGAGGAATTG+AGG	-	chr7.3:4455643-4455662	None:intergenic	30.0%
ATATCCTAATTCTATCTGTC+TGG	+	chr7.3:4454801-4454820	MS.gene072561:intron	30.0%
ATATTGTGAAATGTAGGCTA+AGG	+	chr7.3:4454909-4454928	MS.gene072561:intron	30.0%
ATCCAATTATGTGTCCTATA+TGG	+	chr7.3:4453388-4453407	MS.gene072561:CDS	30.0%
CAAATGGGTCATATCAATAA+GGG	+	chr7.3:4455712-4455731	MS.gene072561:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	4451324	4455781	4451324	ID=MS.gene072561
chr7.3	mRNA	4451324	4455781	4451324	ID=MS.gene072561.t1;Parent=MS.gene072561
chr7.3	exon	4451324	4451478	4451324	ID=MS.gene072561.t1.exon1;Parent=MS.gene072561.t1
chr7.3	CDS	4451324	4451478	4451324	ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1
chr7.3	exon	4451562	4451622	4451562	ID=MS.gene072561.t1.exon2;Parent=MS.gene072561.t1
chr7.3	CDS	4451562	4451622	4451562	ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1
chr7.3	exon	4451775	4451809	4451775	ID=MS.gene072561.t1.exon3;Parent=MS.gene072561.t1
chr7.3	CDS	4451775	4451809	4451775	ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1
chr7.3	exon	4453198	4453685	4453198	ID=MS.gene072561.t1.exon4;Parent=MS.gene072561.t1
chr7.3	CDS	4453198	4453685	4453198	ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1
chr7.3	exon	4453802	4453962	4453802	ID=MS.gene072561.t1.exon5;Parent=MS.gene072561.t1
chr7.3	CDS	4453802	4453962	4453802	ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1
chr7.3	exon	4454093	4454305	4454093	ID=MS.gene072561.t1.exon6;Parent=MS.gene072561.t1
chr7.3	CDS	4454093	4454305	4454093	ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1
chr7.3	exon	4454474	4454648	4454474	ID=MS.gene072561.t1.exon7;Parent=MS.gene072561.t1
chr7.3	CDS	4454474	4454648	4454474	ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1
chr7.3	exon	4455330	4455781	4455330	ID=MS.gene072561.t1.exon8;Parent=MS.gene072561.t1
chr7.3	CDS	4455330	4455781	4455330	ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1

Gene Sequence

>MS.gene072561

ATGGCATCGAAGAGGACATCTCATAGTGATAGTACTAGTCGTAGTTGTGATGACAAGGATCTTTATGTTCCTTCAACCAGCAGTACTAAGCGAATAAAACAACATCATGGGAACCGAGAAGAACAACAAAAGGAGATCCAACACCTTTTATTTCCGTATGTGTTTTATTTTTATTTGATGTACCTTTAAATGTTCCTTTCTTTCTTACTATTTGACTTGACTTCTTTTGTTTTTGCAGCACTATCAGATTCAGTGCCACTGCATTCGCCTTTTGCTTGGAACCCTTACTTCGAAAACTGGTAGGTAATTAACTAACCATTCACCCTCTTACTATATTCCCCTTTAGACCTTTCTTGCTCCATCACCATGTAGTATATACTATTACTAATTAATAATGGATACCAAACTTTGATACTACTAACTCTTATGTTCTGTTTTGTTCCTCAACCAGATACAAGAGGCGATTCACCGCCACCTAAACCCAAGGTATGTCTCTTTAATGCTTCTTTGTCAAATGTTTCCAGTCCATTCATTAAGAGGTTTGAATTTTGTTTTGTTTTTGTGAGAGTGAAAATAATTTACCCTTGTCTACTCCCAACATTTATAATAAGAAAATTGTTGTTCACACATTAAAGAAGACTGGGACACACATGTAAAATACGTTTTTGCCCCCTCGGCAGTTAACTGCCGAGGAATTTAAAACCGGCTGCAGTTAACTGCCGAGGAAATCCTCGGTAGTTAACTGCCGAGGAATATTGTTGATATTGTTATTTGTTGTTATTTGTTCTATCATGTTTTTTTTTAAGACAATATTGTTTCATCATGTTGGAAAGTGGCAGGGGACGTGATTCTGGAAGGAGTTTAGAAACATTAAACTCCAACACACAGGGAACTTCATTAAGCAAGCATTTGCAACACAAGCTTCAACACACACAAATCAAATTTGCAACACAAGCTTCAACACACACAAATCAAATCCAGAAAATCAATTGTCTTCAACACACAAACCCATGCCCAAATTCGTTCACCGAGATTCGCATACCCAAATTTGTAAATCCAAATTCACCATCACATGCCTAGATTCGTTCACCCTAATTACATAATTTTTTAATCTGAATTTGATTTTGAAATGGATCTGAAATTGATTGAGGTGGGAAGTGTAAAATGAATTTGATTTTGAAAATGGAAGATGATGAAGATGATTGCAGATTGCATTTTGCGGACTGCGTTTTTTCTGACTGCGGATTTATGGATTTTGGGAGAAGAAATGTTTTGTTTGTGAGGATGTTATGAACAGTGCGAGAGAGAGGAAGAGAAGATGAACAGTGAAAAAATTTCTGATTCCTCGGCAGTTAACTACCGAGGATTTCCTCGGCAGTTAACTGCAGCCGGATTTTTAATTCCTCGGCAGTTAACTGCCGAGGGGGCAAAAGCGTATTTTACATGTGTGTCCCAGCCTTCTCTAATGTGTCAATAGCAATTTTCTTATAATAATGGATTATAATAATTTAAGAGGTATGTCTCTCAAATTGTTTTTTATTTTTTATTATCAAAACGAATTATAATTTAATATGAAGGAGTGTTAGGACAATGGTTAAGAAAGTAAATATATAAATCTTGTGTTGAAAAGTGGTGAATTTAATGTTTTATAAATTTATAAATTATTATTTTTAATTTAAAACTATTACTTTCGTTTCTTTTAACTAATGTTTTTAGAACACCAGTTTGTCTGACCCAACCAACCGTTGTTCAAGTAAAAGTAAAGGCTACAAAATTTAAGACCGAAAGATATAAACTCAATTTCAATTTTAAATTACAATCATTTCACAAAGCAAAATTAATTATATTGATATTTGTTTTTGTTTGGAATTTAGTTGTGGATTGACGCTTATGTCCAACACATTTGGAAGGAGACGTTTGCAATTGTATTTCATGAACAAATTGCCAAACAGAATTTTCACAAAGTCCAGGATCAAAGCTGAGGGAGGTGAACCACTTCAAATTGAACTGCGTGATGTTGAAAATCAGCAACGCGTAGTCATGGAAGAAGGTTCCTCCATGAAGATCCAATTATGTGTCCTATATGGTGACTTTGAAAAAGAGGATTGGACAGCTGAGGAATTTAATACTCAAATTGCACCTCCAAGAGAGGGAAAAGAAGAACTGTTGAAAGGAAATGAATTCATTACACTAAGAAATGGAGTTGCTGATATCGACAAAGAGATTGAGTTTACAGATATATCAAAGGGAAGAAACGGTCAATTTCGGCTAGGGGTTAAAATAGTTCAATCAAATTCAATTGGAGTGTGCATTCGGGAAGGTAGAAGCGAACCTTTTAAGGTCCTGGATGTTCGAGGAAAGGGTAAGTTCTAAACCTCCGACAAATGTTAGTAATTAGCTATTAAAATAGGTATATGTGATCTCTTGACTTTGATTTTTATTACATTTTTTATGTGCTTTGACATTTGATCATTTCAGATTACGAGAAACACGATCGTCCATCGTTGAATGATGAGGTATGGCGTCTGAAAGGGATACGTAAAAATGGTAAACTTGACAAGCAGTTGGCCTCTCATGGAATACAAACTGTTAAGGATTTTTTAAGATTGTACATAACCAATGAAGCTTCATTAAGAGAGGTAAGAAAATATTTTGAAATATTATGTGTGGTATTATGATTCTTTACTTTAGCCCTAATACTTCTTTATTTAGTTGTTTGATACTTTTGACATTAATGTTGTATATGATTTTTTGGCTTTGGGAAAATAGAAAATAGGCAAGATTGCAAGGAATTCATGGAATACAATTGTTGCACATGCTAAAGATTGTGATGTAGACGATGCTGATGAGCGCTACATCTATTACGCAACTGAACAACCAATATCGTTCCTTGTCTTTAATGCAATTTATAAGGTTGTGGAGGTGACTTTTGATAATGGACAAAACGCTCGTTCTATTCAATCTCTAAACCAGCAAGAAAAGGTTTGTGTTTGCATCCTATATCATAATGTTGGTAGATCCCTTTGGCTGTGAATATTCAGAGTGGACCTTATATGGATTCTTAAATTTAGTGATTCATATCTTACCAAAATATAGTTGTGTATAGTACTCATATCTCTTATATGATCAAAACACTTGTGTCATTGACAGCGCTTGGTGGAAAGAGTTAAGCAACGTGCTTACAAACATTTCAATGATCGGAATCCATTGCCAATTGATACAACAACACTTGGATTGGCGGGGACATTGACAAGTGTACAAAATGCACAATATGACGGTCAAAATCAAGCCCTGCAACAGTCTGACTTTCTAGTTTGTCAGCAAGGTACTCTATAATCTATATATACACTTATATTCTGCATAAAACCTTTTGGATGCATTTCAAAACTGAAAAAGTCTCAAGTTGTATAGGTGTTGAGTCTTGAAGAGGGTATATAACTACGTTTAAAAACTACTAATTTTCAATTTTTTTCGTTGATATCCTAATTCTATCTGTCTGGTCCGTTAAATGCTTCTTTTACTAGTTGTGCCAGACTAACATTTTGTCTTGCAGATATATAAAAATTTGACAGTTACATAAGACAAATATTGTGAAATGTAGGCTAAGGTATTCAATTCAAGCATATATAAAACCGAAGTTATAGTGAAATGTAGCACATTGTTTCCTTTTCTATTTGTCCTGAAAACTAGTAATAATCCTGGTGTATAGCATCCCTCATATTTAAATACATGAAGAAATTCCGAGATAAAACATAGATTTGGTGAAATTTTGTTGTGTCATGGCATGTGTATTTATTTCTACCAGAAAACCAATAAATCAATATTATTACATATGTAAATAAATACAATACCAAACTTGACAAACCTTTCTGTGGCAGTCACTAAACTTTCTTGTTTGTCATATATGTGAGTTTTTGTTATAGTTTTTGTCTTATTTTTGTCGATCATGTTCTTAATATTGTATACTTTGCTCTAATATTTTAGTATTTTACTATATCTTGTACAGGTCAAAAAGAAATTGGGCAAAGTTATGTTCAACCATGTATCTCTACTTCATATGTTAATGAGGGAATGGATAATTACCAGATCTATGTTGATCCAGTGCCAGACATAAGAGAAATACCACGAAACAATCACGTCGGAGCTGAAATGTACATTGATGGGGATGGTTATGGATCACATTTTCCAGTTGTAGAAGGTGGCTATTCGATGGAGAATCTCATGAATGACTATCCTATGTATGCAACATGCGAGCCAGAAAATTACAACTTATATGGTTTCTCTGATGTAGCTGAGTGTAGCACCCATGTTAATATCCTCAATTCCTCTATGGATATATCAAGCAGTGATAAATCAAAAGCAGTGTGGTGTAAGGTTGGGATTGCTATCAAATGGGTCATATCAATAAGGGCTGCAGCTGCTGCCAAGAAGAATGCAAACTTGTTTTATTTTAACTAA

Protein sequence

>MS.gene072561.t1

MASKRTSHSDSTSRSCDDKDLYVPSTSSTKRIKQHHGNREEQQKEIQHLLFPTIRFSATAFAFCLEPLLRKLIQEAIHRHLNPSCGLTLMSNTFGRRRLQLYFMNKLPNRIFTKSRIKAEGGEPLQIELRDVENQQRVVMEEGSSMKIQLCVLYGDFEKEDWTAEEFNTQIAPPREGKEELLKGNEFITLRNGVADIDKEIEFTDISKGRNGQFRLGVKIVQSNSIGVCIREGRSEPFKVLDVRGKDYEKHDRPSLNDEVWRLKGIRKNGKLDKQLASHGIQTVKDFLRLYITNEASLREKIGKIARNSWNTIVAHAKDCDVDDADERYIYYATEQPISFLVFNAIYKVVEVTFDNGQNARSIQSLNQQEKRLVERVKQRAYKHFNDRNPLPIDTTTLGLAGTLTSVQNAQYDGQNQALQQSDFLVCQQGQKEIGQSYVQPCISTSYVNEGMDNYQIYVDPVPDIREIPRNNHVGAEMYIDGDGYGSHFPVVEGGYSMENLMNDYPMYATCEPENYNLYGFSDVAECSTHVNILNSSMDISSSDKSKAVWCKVGIAIKWVISIRAAAAAKKNANLFYFN