Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072561.t1 | XP_013450447.1 | 90.2 | 583 | 44 | 6 | 1 | 579 | 1 | 574 | 3.30E-294 | 1020.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072561.t1 | F4K2R6 | 39.2 | 339 | 183 | 8 | 57 | 386 | 37 | 361 | 2.3e-54 | 214.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072561.t1 | A0A072UFA8 | 90.2 | 583 | 44 | 6 | 1 | 579 | 1 | 574 | 2.4e-294 | 1020.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049159 | MS.gene072561 | 0.842749 | 2.14E-58 | -1.69E-46 |
MS.gene049254 | MS.gene072561 | 0.804382 | 2.22E-49 | -1.69E-46 |
MS.gene049404 | MS.gene072561 | 0.810467 | 1.14E-50 | -1.69E-46 |
MS.gene049435 | MS.gene072561 | 0.823075 | 1.68E-53 | -1.69E-46 |
MS.gene049452 | MS.gene072561 | 0.839266 | 1.76E-57 | -1.69E-46 |
MS.gene049850 | MS.gene072561 | 0.808944 | 2.41E-50 | -1.69E-46 |
MS.gene049958 | MS.gene072561 | 0.808854 | 2.52E-50 | -1.69E-46 |
MS.gene049983 | MS.gene072561 | 0.829075 | 6.30E-55 | -1.69E-46 |
MS.gene050442 | MS.gene072561 | 0.857701 | 1.36E-62 | -1.69E-46 |
MS.gene050654 | MS.gene072561 | 0.806269 | 8.93E-50 | -1.69E-46 |
MS.gene050759 | MS.gene072561 | 0.989812 | 9.29E-180 | -1.69E-46 |
MS.gene050760 | MS.gene072561 | 0.805566 | 1.25E-49 | -1.69E-46 |
MS.gene050962 | MS.gene072561 | 0.987667 | 4.31E-171 | -1.69E-46 |
MS.gene050963 | MS.gene072561 | 0.806583 | 7.67E-50 | -1.69E-46 |
MS.gene051198 | MS.gene072561 | 0.833923 | 4.03E-56 | -1.69E-46 |
MS.gene051279 | MS.gene072561 | 0.822534 | 2.25E-53 | -1.69E-46 |
MS.gene051490 | MS.gene072561 | 0.823574 | 1.29E-53 | -1.69E-46 |
MS.gene051744 | MS.gene072561 | 0.819116 | 1.38E-52 | -1.69E-46 |
MS.gene051800 | MS.gene072561 | 0.828196 | 1.03E-54 | -1.69E-46 |
MS.gene052012 | MS.gene072561 | 0.814564 | 1.44E-51 | -1.69E-46 |
MS.gene052016 | MS.gene072561 | 0.818429 | 1.97E-52 | -1.69E-46 |
MS.gene052020 | MS.gene072561 | 0.804453 | 2.14E-49 | -1.69E-46 |
MS.gene05215 | MS.gene072561 | 0.826869 | 2.14E-54 | -1.69E-46 |
MS.gene052459 | MS.gene072561 | 0.809493 | 1.84E-50 | -1.69E-46 |
MS.gene052463 | MS.gene072561 | 0.818367 | 2.03E-52 | -1.69E-46 |
MS.gene052584 | MS.gene072561 | 0.802378 | 5.77E-49 | -1.69E-46 |
MS.gene052675 | MS.gene072561 | 0.803433 | 3.49E-49 | -1.69E-46 |
MS.gene052677 | MS.gene072561 | 0.802858 | 4.60E-49 | -1.69E-46 |
MS.gene053079 | MS.gene072561 | 0.829552 | 4.83E-55 | -1.69E-46 |
MS.gene053226 | MS.gene072561 | 0.808656 | 2.78E-50 | -1.69E-46 |
MS.gene053296 | MS.gene072561 | 0.810881 | 9.25E-51 | -1.69E-46 |
MS.gene053621 | MS.gene072561 | 0.804116 | 2.52E-49 | -1.69E-46 |
MS.gene05410 | MS.gene072561 | 0.814059 | 1.87E-51 | -1.69E-46 |
MS.gene05414 | MS.gene072561 | 0.829592 | 4.72E-55 | -1.69E-46 |
MS.gene05415 | MS.gene072561 | 0.815384 | 9.50E-52 | -1.69E-46 |
MS.gene054236 | MS.gene072561 | 0.816899 | 4.36E-52 | -1.69E-46 |
MS.gene054479 | MS.gene072561 | 0.812786 | 3.56E-51 | -1.69E-46 |
MS.gene054651 | MS.gene072561 | 0.833014 | 6.80E-56 | -1.69E-46 |
MS.gene054775 | MS.gene072561 | 0.800906 | 1.16E-48 | -1.69E-46 |
MS.gene054892 | MS.gene072561 | 0.820361 | 7.14E-53 | -1.69E-46 |
MS.gene054893 | MS.gene072561 | 0.819247 | 1.28E-52 | -1.69E-46 |
MS.gene05517 | MS.gene072561 | 0.802952 | 4.40E-49 | -1.69E-46 |
MS.gene055222 | MS.gene072561 | 0.851883 | 6.64E-61 | -1.69E-46 |
MS.gene055513 | MS.gene072561 | 0.806447 | 8.19E-50 | -1.69E-46 |
MS.gene055926 | MS.gene072561 | 0.85263 | 4.07E-61 | -1.69E-46 |
MS.gene056162 | MS.gene072561 | 0.819833 | 9.43E-53 | -1.69E-46 |
MS.gene056174 | MS.gene072561 | 0.839169 | 1.86E-57 | -1.69E-46 |
MS.gene056506 | MS.gene072561 | 0.810153 | 1.33E-50 | -1.69E-46 |
MS.gene056776 | MS.gene072561 | 0.8025 | 5.45E-49 | -1.69E-46 |
MS.gene056779 | MS.gene072561 | 0.808837 | 2.55E-50 | -1.69E-46 |
MS.gene05686 | MS.gene072561 | 0.811763 | 5.95E-51 | -1.69E-46 |
MS.gene057155 | MS.gene072561 | 0.809023 | 2.32E-50 | -1.69E-46 |
MS.gene057208 | MS.gene072561 | 0.816126 | 6.49E-52 | -1.69E-46 |
MS.gene05761 | MS.gene072561 | 0.81634 | 5.82E-52 | -1.69E-46 |
MS.gene057693 | MS.gene072561 | 0.810055 | 1.39E-50 | -1.69E-46 |
MS.gene057869 | MS.gene072561 | 0.828028 | 1.13E-54 | -1.69E-46 |
MS.gene057915 | MS.gene072561 | 0.815144 | 1.07E-51 | -1.69E-46 |
MS.gene058010 | MS.gene072561 | 0.829274 | 5.64E-55 | -1.69E-46 |
MS.gene058146 | MS.gene072561 | 0.80571 | 1.17E-49 | -1.69E-46 |
MS.gene058548 | MS.gene072561 | 0.802794 | 4.74E-49 | -1.69E-46 |
MS.gene058625 | MS.gene072561 | 0.802976 | 4.35E-49 | -1.69E-46 |
MS.gene059283 | MS.gene072561 | 0.839589 | 1.45E-57 | -1.69E-46 |
MS.gene059842 | MS.gene072561 | 0.818328 | 2.08E-52 | -1.69E-46 |
MS.gene060011 | MS.gene072561 | 0.84211 | 3.16E-58 | -1.69E-46 |
MS.gene060322 | MS.gene072561 | 0.814773 | 1.30E-51 | -1.69E-46 |
MS.gene060520 | MS.gene072561 | 0.803023 | 4.25E-49 | -1.69E-46 |
MS.gene06052 | MS.gene072561 | 0.854089 | 1.55E-61 | -1.69E-46 |
MS.gene060802 | MS.gene072561 | 0.854115 | 1.53E-61 | -1.69E-46 |
MS.gene060803 | MS.gene072561 | 0.841287 | 5.21E-58 | -1.69E-46 |
MS.gene060850 | MS.gene072561 | 0.814675 | 1.37E-51 | -1.69E-46 |
MS.gene060851 | MS.gene072561 | 0.81616 | 6.38E-52 | -1.69E-46 |
MS.gene060852 | MS.gene072561 | 0.810732 | 9.96E-51 | -1.69E-46 |
MS.gene060932 | MS.gene072561 | 0.828014 | 1.14E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072561.t1 | MTR_7g111980 | 90.223 | 583 | 44 | 6 | 1 | 579 | 1 | 574 | 0.0 | 1040 |
MS.gene072561.t1 | MTR_7g111980 | 93.279 | 491 | 32 | 1 | 90 | 579 | 1 | 491 | 0.0 | 921 |
MS.gene072561.t1 | MTR_7g111960 | 59.797 | 592 | 192 | 14 | 1 | 577 | 1 | 561 | 0.0 | 622 |
MS.gene072561.t1 | MTR_7g112000 | 47.104 | 518 | 232 | 13 | 62 | 571 | 41 | 524 | 3.81e-131 | 394 |
MS.gene072561.t1 | MTR_2g450080 | 29.091 | 550 | 332 | 15 | 64 | 571 | 53 | 586 | 3.38e-52 | 188 |
MS.gene072561.t1 | MTR_8g104490 | 33.333 | 417 | 236 | 13 | 65 | 450 | 50 | 455 | 1.03e-51 | 185 |
MS.gene072561.t1 | MTR_6g083730 | 34.604 | 341 | 202 | 8 | 61 | 387 | 48 | 381 | 7.40e-51 | 182 |
MS.gene072561.t1 | MTR_4g090970 | 35.224 | 335 | 198 | 8 | 64 | 385 | 54 | 382 | 3.25e-50 | 183 |
MS.gene072561.t1 | MTR_4g106810 | 28.782 | 542 | 322 | 19 | 65 | 577 | 40 | 546 | 1.67e-48 | 177 |
MS.gene072561.t1 | MTR_8g104510 | 35.484 | 341 | 191 | 10 | 65 | 387 | 50 | 379 | 1.74e-48 | 176 |
MS.gene072561.t1 | MTR_8g104490 | 33.763 | 388 | 227 | 12 | 82 | 450 | 14 | 390 | 2.16e-48 | 174 |
MS.gene072561.t1 | MTR_2g011810 | 33.832 | 334 | 204 | 7 | 64 | 385 | 55 | 383 | 3.31e-48 | 178 |
MS.gene072561.t1 | MTR_4g128600 | 33.433 | 335 | 204 | 8 | 64 | 385 | 52 | 380 | 7.86e-48 | 177 |
MS.gene072561.t1 | MTR_6g083320 | 38.340 | 253 | 142 | 5 | 61 | 300 | 48 | 299 | 2.05e-42 | 157 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072561.t1 | AT5G26920 | 39.233 | 339 | 183 | 8 | 57 | 386 | 37 | 361 | 2.59e-65 | 219 |
MS.gene072561.t1 | AT5G26920 | 34.222 | 450 | 244 | 14 | 61 | 493 | 41 | 455 | 1.27e-64 | 221 |
MS.gene072561.t1 | AT5G26920 | 33.630 | 449 | 240 | 14 | 61 | 493 | 41 | 447 | 1.45e-61 | 213 |
MS.gene072561.t1 | AT5G57580 | 36.391 | 338 | 194 | 8 | 64 | 386 | 50 | 381 | 2.60e-56 | 201 |
MS.gene072561.t1 | AT4G25800 | 36.202 | 337 | 196 | 8 | 64 | 386 | 39 | 370 | 4.09e-55 | 196 |
MS.gene072561.t1 | AT4G25800 | 36.202 | 337 | 196 | 8 | 64 | 386 | 39 | 370 | 4.09e-55 | 196 |
MS.gene072561.t1 | AT2G24300 | 35.821 | 335 | 197 | 8 | 65 | 386 | 51 | 380 | 3.43e-51 | 186 |
MS.gene072561.t1 | AT2G24300 | 35.821 | 335 | 197 | 8 | 65 | 386 | 47 | 376 | 3.53e-51 | 186 |
MS.gene072561.t1 | AT4G31000 | 29.944 | 531 | 324 | 18 | 64 | 571 | 50 | 555 | 6.12e-49 | 179 |
MS.gene072561.t1 | AT2G24300 | 37.288 | 295 | 175 | 7 | 97 | 386 | 40 | 329 | 2.88e-48 | 177 |
MS.gene072561.t1 | AT2G18750 | 33.832 | 334 | 202 | 9 | 64 | 385 | 56 | 382 | 3.40e-47 | 175 |
MS.gene072561.t1 | AT2G18750 | 33.832 | 334 | 202 | 9 | 64 | 385 | 56 | 382 | 3.40e-47 | 175 |
MS.gene072561.t1 | AT2G18750 | 33.832 | 334 | 202 | 9 | 64 | 385 | 56 | 382 | 3.40e-47 | 175 |
MS.gene072561.t1 | AT5G62570 | 35.135 | 333 | 195 | 11 | 37 | 355 | 17 | 342 | 8.11e-47 | 169 |
MS.gene072561.t1 | AT5G62570 | 36.012 | 336 | 194 | 11 | 64 | 387 | 31 | 357 | 8.18e-47 | 171 |
MS.gene072561.t1 | AT5G62570 | 33.973 | 365 | 218 | 12 | 37 | 387 | 17 | 372 | 8.32e-47 | 172 |
MS.gene072561.t1 | AT1G73805 | 34.921 | 315 | 185 | 9 | 64 | 368 | 49 | 353 | 9.62e-44 | 162 |
MS.gene072561.t1 | AT5G62570 | 37.319 | 276 | 156 | 8 | 37 | 300 | 17 | 287 | 7.09e-41 | 150 |
MS.gene072561.t1 | AT4G31000 | 28.776 | 490 | 293 | 17 | 97 | 571 | 86 | 534 | 2.44e-37 | 145 |
Find 117 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAGAAAATTACAACTTATA+TGG | 0.249341 | 7.3:+4455578 | MS.gene072561:CDS |
TGTCTTTAATGCAATTTATA+AGG | 0.254202 | 7.3:+4454215 | MS.gene072561:CDS |
AAACAAGTTTGCATTCTTCT+TGG | 0.267253 | 7.3:-4455747 | None:intergenic |
TCAAATGGGTCATATCAATA+AGG | 0.269623 | 7.3:+4455711 | MS.gene072561:CDS |
CGAACATCCAGGACCTTAAA+AGG | 0.293535 | 7.3:-4453655 | None:intergenic |
GCTTTGGGAAAATAGAAAAT+AGG | 0.294223 | 7.3:+4454078 | MS.gene072561:intron |
CTCTCTTAATGAAGCTTCAT+TGG | 0.301175 | 7.3:-4453940 | None:intergenic |
CTAGAAAGTCAGACTGTTGC+AGG | 0.314296 | 7.3:-4454614 | None:intergenic |
AAAACACATACGGAAATAAA+AGG | 0.316297 | 7.3:-4451467 | None:intergenic |
AAGAGACATACCTTGGGTTT+AGG | 0.317099 | 7.3:-4451798 | None:intergenic |
CACCATATAGGACACATAAT+TGG | 0.319161 | 7.3:-4453390 | None:intergenic |
CCAAGTGTTGTTGTATCAAT+TGG | 0.338990 | 7.3:-4454534 | None:intergenic |
ATCCAATTATGTGTCCTATA+TGG | 0.346907 | 7.3:+4453388 | MS.gene072561:CDS |
ACCTCCCTCAGCTTTGATCC+TGG | 0.359913 | 7.3:-4453290 | None:intergenic |
CGTGGTATTTCTCTTATGTC+TGG | 0.364419 | 7.3:-4455428 | None:intergenic |
ATTCAATTGGAGTGTGCATT+CGG | 0.364879 | 7.3:+4453617 | MS.gene072561:CDS |
TAATATCCTCAATTCCTCTA+TGG | 0.371453 | 7.3:+4455634 | MS.gene072561:CDS |
TTAAAGACAAGGAACGATAT+TGG | 0.379176 | 7.3:-4454201 | None:intergenic |
ACGCTTATGTCCAACACATT+TGG | 0.388946 | 7.3:+4453208 | MS.gene072561:CDS |
ATAGTTCAATCAAATTCAAT+TGG | 0.395077 | 7.3:+4453604 | MS.gene072561:CDS |
GCAAGATTGCAAGGAATTCA+TGG | 0.398753 | 7.3:+4454100 | MS.gene072561:CDS |
GACTTTGTGAAAATTCTGTT+TGG | 0.402548 | 7.3:-4453268 | None:intergenic |
AGGTTGGGATTGCTATCAAA+TGG | 0.410010 | 7.3:+4455696 | MS.gene072561:CDS |
TACATTGATGGGGATGGTTA+TGG | 0.410884 | 7.3:+4455476 | MS.gene072561:CDS |
GGAACCCTTACTTCGAAAAC+TGG | 0.411784 | 7.3:+4451601 | MS.gene072561:CDS |
TTCAATTGGAGTGTGCATTC+GGG | 0.412066 | 7.3:+4453618 | MS.gene072561:CDS |
GACACATAATTGGATCTTCA+TGG | 0.423184 | 7.3:-4453380 | None:intergenic |
CAAATGGGTCATATCAATAA+GGG | 0.429109 | 7.3:+4455712 | MS.gene072561:CDS |
CCAATTGATACAACAACACT+TGG | 0.429867 | 7.3:+4454534 | MS.gene072561:CDS |
ACAACAACACTTGGATTGGC+GGG | 0.430460 | 7.3:+4454543 | MS.gene072561:CDS |
AGGGAAGAAACGGTCAATTT+CGG | 0.433035 | 7.3:+4453569 | MS.gene072561:CDS |
CGCTTAGTACTGCTGGTTGA+AGG | 0.436286 | 7.3:-4451393 | None:intergenic |
GTCCTGGATGTTCGAGGAAA+GGG | 0.442948 | 7.3:+4453664 | MS.gene072561:CDS |
ATTTCTCTTATGTCTGGCAC+TGG | 0.445144 | 7.3:-4455422 | None:intergenic |
TCATGGAATACAAACTGTTA+AGG | 0.451447 | 7.3:+4453896 | MS.gene072561:CDS |
GAATAGCCACCTTCTACAAC+TGG | 0.452656 | 7.3:-4455509 | None:intergenic |
CTCTACTTCATATGTTAATG+AGG | 0.454792 | 7.3:+4455370 | MS.gene072561:CDS |
GAATTCATTACACTAAGAAA+TGG | 0.459824 | 7.3:+4453502 | MS.gene072561:CDS |
ATCTCTAAACCAGCAAGAAA+AGG | 0.460286 | 7.3:+4454284 | MS.gene072561:CDS |
GGAGCTGAAATGTACATTGA+TGG | 0.463707 | 7.3:+4455464 | MS.gene072561:CDS |
GAACCGAGAAGAACAACAAA+AGG | 0.470127 | 7.3:+4451434 | MS.gene072561:CDS |
TGATACAACAACACTTGGAT+TGG | 0.474933 | 7.3:+4454539 | MS.gene072561:CDS |
TAATGCAATTTATAAGGTTG+TGG | 0.483276 | 7.3:+4454221 | MS.gene072561:CDS |
AAGTAAGGGTTCCAAGCAAA+AGG | 0.485530 | 7.3:-4451591 | None:intergenic |
GACAAGCAGTTGGCCTCTCA+TGG | 0.486364 | 7.3:+4453879 | MS.gene072561:CDS |
GCTCCGACGTGATTGTTTCG+TGG | 0.498008 | 7.3:-4455446 | None:intergenic |
AAAGCAGTGTGGTGTAAGGT+TGG | 0.498718 | 7.3:+4455680 | MS.gene072561:CDS |
AAGCGAATAAAACAACATCA+TGG | 0.498950 | 7.3:+4451411 | MS.gene072561:CDS |
ATGAGGTATGGCGTCTGAAA+GGG | 0.499358 | 7.3:+4453835 | MS.gene072561:CDS |
TACAACAACACTTGGATTGG+CGG | 0.500047 | 7.3:+4454542 | MS.gene072561:CDS |
GAGCTGAAATGTACATTGAT+GGG | 0.500184 | 7.3:+4455465 | MS.gene072561:CDS |
ATCAAAAGCAGTGTGGTGTA+AGG | 0.502186 | 7.3:+4455676 | MS.gene072561:CDS |
GAAACGGTCAATTTCGGCTA+GGG | 0.507035 | 7.3:+4453575 | MS.gene072561:CDS |
TTTAAGGTCCTGGATGTTCG+AGG | 0.509003 | 7.3:+4453658 | MS.gene072561:CDS |
TTCATATGTTAATGAGGGAA+TGG | 0.510467 | 7.3:+4455376 | MS.gene072561:CDS |
GATATATCAAAGGGAAGAAA+CGG | 0.511181 | 7.3:+4453559 | MS.gene072561:CDS |
GCACTGGATCAACATAGATC+TGG | 0.511948 | 7.3:-4455406 | None:intergenic |
CTTACAAACATTTCAATGAT+CGG | 0.513255 | 7.3:+4454502 | MS.gene072561:CDS |
TCAAATTGCACCTCCAAGAG+AGG | 0.517774 | 7.3:+4453453 | MS.gene072561:CDS |
AAGCAGTGTGGTGTAAGGTT+GGG | 0.517845 | 7.3:+4455681 | MS.gene072561:CDS |
AGAAAATAGGCAAGATTGCA+AGG | 0.529169 | 7.3:+4454091 | MS.gene072561:intron |
GGAAAAGAAGAACTGTTGAA+AGG | 0.529919 | 7.3:+4453475 | MS.gene072561:CDS |
GATGAGGTATGGCGTCTGAA+AGG | 0.532114 | 7.3:+4453834 | MS.gene072561:CDS |
GACTTTCTAGTTTGTCAGCA+AGG | 0.534248 | 7.3:+4454627 | MS.gene072561:CDS |
TACCCTTTCCTCGAACATCC+AGG | 0.537589 | 7.3:-4453666 | None:intergenic |
ATATATCCATAGAGGAATTG+AGG | 0.540392 | 7.3:-4455640 | None:intergenic |
AACAGTTTGTATTCCATGAG+AGG | 0.541937 | 7.3:-4453892 | None:intergenic |
GAGTTTACAGATATATCAAA+GGG | 0.542863 | 7.3:+4453550 | MS.gene072561:CDS |
GGTTGGGATTGCTATCAAAT+GGG | 0.547074 | 7.3:+4455697 | MS.gene072561:CDS |
AAATCAGCAACGCGTAGTCA+TGG | 0.550182 | 7.3:+4453345 | MS.gene072561:CDS |
CATACGGAAATAAAAGGTGT+TGG | 0.554012 | 7.3:-4451461 | None:intergenic |
TGAGTTTACAGATATATCAA+AGG | 0.556394 | 7.3:+4453549 | MS.gene072561:CDS |
TGCAATTTATAAGGTTGTGG+AGG | 0.556418 | 7.3:+4454224 | MS.gene072561:CDS |
TCTACTTCATATGTTAATGA+GGG | 0.557125 | 7.3:+4455371 | MS.gene072561:CDS |
GGCTCGCATGTTGCATACAT+AGG | 0.557498 | 7.3:-4455557 | None:intergenic |
CATCGTTGAATGATGAGGTA+TGG | 0.559097 | 7.3:+4453823 | MS.gene072561:CDS |
CATACCTTGGGTTTAGGTGG+CGG | 0.565063 | 7.3:-4451792 | None:intergenic |
GTTGTTGTATCAATTGGCAA+TGG | 0.566856 | 7.3:-4454528 | None:intergenic |
TCACGCAGTTCAATTTGAAG+TGG | 0.568198 | 7.3:-4453316 | None:intergenic |
AGACATACCTTGGGTTTAGG+TGG | 0.570711 | 7.3:-4451795 | None:intergenic |
AGGAATTGAGGATATTAACA+TGG | 0.571805 | 7.3:-4455628 | None:intergenic |
AGCGAATAAAACAACATCAT+GGG | 0.573517 | 7.3:+4451412 | MS.gene072561:CDS |
GGTCCTGGATGTTCGAGGAA+AGG | 0.575080 | 7.3:+4453663 | MS.gene072561:CDS |
CAAATTGCACCTCCAAGAGA+GGG | 0.582196 | 7.3:+4453454 | MS.gene072561:CDS |
ACTGCTTGATATATCCATAG+AGG | 0.587495 | 7.3:-4455648 | None:intergenic |
CAACGCGTAGTCATGGAAGA+AGG | 0.592392 | 7.3:+4453352 | MS.gene072561:CDS |
GTGTCATTGACAGCGCTTGG+TGG | 0.595299 | 7.3:+4454461 | MS.gene072561:intron |
ACGTCTCCTTCCAAATGTGT+TGG | 0.598433 | 7.3:-4453218 | None:intergenic |
TGTAGAAGGTGGCTATTCGA+TGG | 0.598654 | 7.3:+4455514 | MS.gene072561:CDS |
AAACGGTCAATTTCGGCTAG+GGG | 0.604248 | 7.3:+4453576 | MS.gene072561:CDS |
CAATGAAGCTTCATTAAGAG+AGG | 0.604707 | 7.3:+4453941 | MS.gene072561:CDS |
GTTCCTCAACCAGATACAAG+AGG | 0.606042 | 7.3:+4451762 | MS.gene072561:intron |
AGAAACGGTCAATTTCGGCT+AGG | 0.609606 | 7.3:+4453574 | MS.gene072561:CDS |
ATTGGAGTGTGCATTCGGGA+AGG | 0.610490 | 7.3:+4453622 | MS.gene072561:CDS |
CAACAACACTTGGATTGGCG+GGG | 0.619083 | 7.3:+4454544 | MS.gene072561:CDS |
AAGTCCAGGATCAAAGCTGA+GGG | 0.620476 | 7.3:+4453286 | MS.gene072561:CDS |
TTATGTCCAACACATTTGGA+AGG | 0.624378 | 7.3:+4453212 | MS.gene072561:CDS |
TATAAATTGCATTAAAGACA+AGG | 0.627430 | 7.3:-4454212 | None:intergenic |
AAAGTCCAGGATCAAAGCTG+AGG | 0.634583 | 7.3:+4453285 | MS.gene072561:CDS |
CAAGCAAAAGGCGAATGCAG+TGG | 0.634985 | 7.3:-4451579 | None:intergenic |
TGGTAAACTTGACAAGCAGT+TGG | 0.637384 | 7.3:+4453869 | MS.gene072561:CDS |
TAGTCGTAGTTGTGATGACA+AGG | 0.637677 | 7.3:+4451359 | MS.gene072561:CDS |
TAGAAAGTCAGACTGTTGCA+GGG | 0.643701 | 7.3:-4454613 | None:intergenic |
ACATATGAAGTAGAGATACA+TGG | 0.644934 | 7.3:-4455362 | None:intergenic |
AAAAGAGGATTGGACAGCTG+AGG | 0.645437 | 7.3:+4453420 | MS.gene072561:CDS |
TCGTCCATCGTTGAATGATG+AGG | 0.648172 | 7.3:+4453818 | MS.gene072561:CDS |
GTACAAAATGCACAATATGA+CGG | 0.648816 | 7.3:+4454579 | MS.gene072561:CDS |
TTCACCGCCACCTAAACCCA+AGG | 0.650298 | 7.3:+4451788 | MS.gene072561:CDS |
TCCAGGATCAAAGCTGAGGG+AGG | 0.652637 | 7.3:+4453289 | MS.gene072561:CDS |
GGAATTGAGGATATTAACAT+GGG | 0.655798 | 7.3:-4455627 | None:intergenic |
ATTATTAGATGGCATCGAAG+AGG | 0.671982 | 7.3:+4451316 | None:intergenic |
AGCTGAAATGTACATTGATG+GGG | 0.679345 | 7.3:+4455466 | MS.gene072561:CDS |
GTGATAAATCAAAAGCAGTG+TGG | 0.718101 | 7.3:+4455669 | MS.gene072561:CDS |
GAAATGTACATTGATGGGGA+TGG | 0.735643 | 7.3:+4455470 | MS.gene072561:CDS |
ACATAATTGGATCTTCATGG+AGG | 0.751325 | 7.3:-4453377 | None:intergenic |
CATACCTCATCATTCAACGA+TGG | 0.753671 | 7.3:-4453822 | None:intergenic |
ATACCACGAAACAATCACGT+CGG | 0.787963 | 7.3:+4455443 | MS.gene072561:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAAAAATAAAACACATA+CGG | - | chr7.3:4451480-4451499 | None:intergenic | 10.0% |
!! | ATACTATTACTAATTAATAA+TGG | + | chr7.3:4451699-4451718 | MS.gene072561:intron | 10.0% |
!! | GATTAAAAAATTATGTAATT+AGG | - | chr7.3:4452417-4452436 | None:intergenic | 10.0% |
!!! | AATTTTCTTATTATAAATGT+TGG | - | chr7.3:4451921-4451940 | None:intergenic | 10.0% |
!!! | ATGTAATAATATTGATTTAT+TGG | - | chr7.3:4455136-4455155 | None:intergenic | 10.0% |
!!! | ATTTTCTTATTATAAATGTT+GGG | - | chr7.3:4451920-4451939 | None:intergenic | 10.0% |
!! | CGAATTATAATTTAATATGA+AGG | + | chr7.3:4452879-4452898 | MS.gene072561:intron | 15.0% |
!! | TAAATTTAAGAATCCATATA+AGG | - | chr7.3:4454374-4454393 | None:intergenic | 15.0% |
!! | TAGTAATTAGCTATTAAAAT+AGG | + | chr7.3:4453712-4453731 | MS.gene072561:intron | 15.0% |
!!! | AACTAAATAAAGAAGTATTA+GGG | - | chr7.3:4454018-4454037 | None:intergenic | 15.0% |
!!! | AATGAATTTGATTTTGAAAA+TGG | + | chr7.3:4452487-4452506 | MS.gene072561:intron | 15.0% |
!!! | ATATTTTGAAATATTATGTG+TGG | + | chr7.3:4453971-4453990 | MS.gene072561:intron | 15.0% |
!!! | ATGGATTATAATAATTTAAG+AGG | + | chr7.3:4452817-4452836 | MS.gene072561:intron | 15.0% |
!!! | TAATGTTGTATATGATTTTT+TGG | + | chr7.3:4454056-4454075 | MS.gene072561:intron | 15.0% |
!!! | TAGCAATTTTCTTATAATAA+TGG | + | chr7.3:4452798-4452817 | MS.gene072561:intron | 15.0% |
!!! | TATTGATATTTGTTTTTGTT+TGG | + | chr7.3:4453168-4453187 | MS.gene072561:intron | 15.0% |
!! | ATAGTTCAATCAAATTCAAT+TGG | + | chr7.3:4453604-4453623 | MS.gene072561:CDS | 20.0% |
!! | CTTCATGTATTTAAATATGA+GGG | - | chr7.3:4455039-4455058 | None:intergenic | 20.0% |
!! | GAAATTGAGTTTATATCTTT+CGG | - | chr7.3:4453108-4453127 | None:intergenic | 20.0% |
!! | GAATTTGGATTTACAAATTT+GGG | - | chr7.3:4452368-4452387 | None:intergenic | 20.0% |
!! | TAGTAATAGTATATACTACA+TGG | - | chr7.3:4451691-4451710 | None:intergenic | 20.0% |
!! | TATAAATTGCATTAAAGACA+AGG | - | chr7.3:4454215-4454234 | None:intergenic | 20.0% |
!! | TCTTCATGTATTTAAATATG+AGG | - | chr7.3:4455040-4455059 | None:intergenic | 20.0% |
!! | TGAATTTGGATTTACAAATT+TGG | - | chr7.3:4452369-4452388 | None:intergenic | 20.0% |
!! | TGTCTTTAATGCAATTTATA+AGG | + | chr7.3:4454215-4454234 | MS.gene072561:CDS | 20.0% |
!!! | ATATTGATTTATTGGTTTTC+TGG | - | chr7.3:4455128-4455147 | None:intergenic | 20.0% |
!!! | ATCTGAATTTGATTTTGAAA+TGG | + | chr7.3:4452434-4452453 | MS.gene072561:intron | 20.0% |
!!! | CAACTAAATAAAGAAGTATT+AGG | - | chr7.3:4454019-4454038 | None:intergenic | 20.0% |
!!! | TACTATACACAACTATATTT+TGG | - | chr7.3:4454412-4454431 | None:intergenic | 20.0% |
! | AAAACACATACGGAAATAAA+AGG | - | chr7.3:4451470-4451489 | None:intergenic | 25.0% |
! | AATTCAAACCTCTTAATGAA+TGG | - | chr7.3:4451852-4451871 | None:intergenic | 25.0% |
! | ACAATATCAACAATATTCCT+CGG | - | chr7.3:4452072-4452091 | None:intergenic | 25.0% |
! | ACAATATTGTTTCATCATGT+TGG | + | chr7.3:4452130-4452149 | MS.gene072561:intron | 25.0% |
! | AGAAAGAAAGGAACATTTAA+AGG | - | chr7.3:4451509-4451528 | None:intergenic | 25.0% |
! | AGACAAATATTGTGAAATGT+AGG | + | chr7.3:4454903-4454922 | MS.gene072561:intron | 25.0% |
! | AGCTAATTACTAACATTTGT+CGG | - | chr7.3:4453704-4453723 | None:intergenic | 25.0% |
! | AGTCAAATAGTAAGAAAGAA+AGG | - | chr7.3:4451521-4451540 | None:intergenic | 25.0% |
! | ATAAATCTTGTGTTGAAAAG+TGG | + | chr7.3:4452934-4452953 | MS.gene072561:intron | 25.0% |
! | ATCTACCAACATTATGATAT+AGG | - | chr7.3:4454323-4454342 | None:intergenic | 25.0% |
! | CCAGAAAATTACAACTTATA+TGG | + | chr7.3:4455578-4455597 | MS.gene072561:CDS | 25.0% |
! | CTTACAAACATTTCAATGAT+CGG | + | chr7.3:4454502-4454521 | MS.gene072561:CDS | 25.0% |
! | GAATTCATTACACTAAGAAA+TGG | + | chr7.3:4453502-4453521 | MS.gene072561:CDS | 25.0% |
! | GAGTTTACAGATATATCAAA+GGG | + | chr7.3:4453550-4453569 | MS.gene072561:CDS | 25.0% |
! | TAATGCAATTTATAAGGTTG+TGG | + | chr7.3:4454221-4454240 | MS.gene072561:CDS | 25.0% |
! | TCTACTTCATATGTTAATGA+GGG | + | chr7.3:4455371-4455390 | MS.gene072561:CDS | 25.0% |
! | TGAAAAAATTTCTGATTCCT+CGG | + | chr7.3:4452650-4452669 | MS.gene072561:intron | 25.0% |
! | TGAGTTTACAGATATATCAA+AGG | + | chr7.3:4453549-4453568 | MS.gene072561:CDS | 25.0% |
!! | ACCAAATCTATGTTTTATCT+CGG | - | chr7.3:4455067-4455086 | None:intergenic | 25.0% |
!! | ATATTCTGCATAAAACCTTT+TGG | + | chr7.3:4454675-4454694 | MS.gene072561:intron | 25.0% |
!! | CCATATAAGTTGTAATTTTC+TGG | - | chr7.3:4455581-4455600 | None:intergenic | 25.0% |
!!! | ATTTAATATGAAGGAGTGTT+AGG | + | chr7.3:4452888-4452907 | MS.gene072561:intron | 25.0% |
!!! | CTAGTAAAAGAAGCATTTAA+CGG | - | chr7.3:4454828-4454847 | None:intergenic | 25.0% |
!!! | CTTTACTTTTACTTGAACAA+CGG | - | chr7.3:4453069-4453088 | None:intergenic | 25.0% |
!!! | GTATATGATTTTTTGGCTTT+GGG | + | chr7.3:4454063-4454082 | MS.gene072561:intron | 25.0% |
!!! | TGTATATGATTTTTTGGCTT+TGG | + | chr7.3:4454062-4454081 | MS.gene072561:intron | 25.0% |
!!! | TTTTGTTTGGAATTTAGTTG+TGG | + | chr7.3:4453181-4453200 | MS.gene072561:intron | 25.0% |
AAACAAGTTTGCATTCTTCT+TGG | - | chr7.3:4455750-4455769 | None:intergenic | 30.0% | |
AAGCGAATAAAACAACATCA+TGG | + | chr7.3:4451411-4451430 | MS.gene072561:CDS | 30.0% | |
ACATATGAAGTAGAGATACA+TGG | - | chr7.3:4455365-4455384 | None:intergenic | 30.0% | |
AGCGAATAAAACAACATCAT+GGG | + | chr7.3:4451412-4451431 | MS.gene072561:CDS | 30.0% | |
AGGAATTGAGGATATTAACA+TGG | - | chr7.3:4455631-4455650 | None:intergenic | 30.0% | |
ATATATCCATAGAGGAATTG+AGG | - | chr7.3:4455643-4455662 | None:intergenic | 30.0% | |
ATATCCTAATTCTATCTGTC+TGG | + | chr7.3:4454801-4454820 | MS.gene072561:intron | 30.0% | |
ATATTGTGAAATGTAGGCTA+AGG | + | chr7.3:4454909-4454928 | MS.gene072561:intron | 30.0% | |
ATCCAATTATGTGTCCTATA+TGG | + | chr7.3:4453388-4453407 | MS.gene072561:CDS | 30.0% | |
CAAATGGGTCATATCAATAA+GGG | + | chr7.3:4455712-4455731 | MS.gene072561:CDS | 30.0% | |
CGTTGTTCAAGTAAAAGTAA+AGG | + | chr7.3:4453067-4453086 | MS.gene072561:intron | 30.0% | |
CTCTACTTCATATGTTAATG+AGG | + | chr7.3:4455370-4455389 | MS.gene072561:CDS | 30.0% | |
CTGAAAACTAGTAATAATCC+TGG | + | chr7.3:4455003-4455022 | MS.gene072561:intron | 30.0% | |
GACTTTGTGAAAATTCTGTT+TGG | - | chr7.3:4453271-4453290 | None:intergenic | 30.0% | |
GAGTTAGTAGTATCAAAGTT+TGG | - | chr7.3:4451728-4451747 | None:intergenic | 30.0% | |
GATATATCAAAGGGAAGAAA+CGG | + | chr7.3:4453559-4453578 | MS.gene072561:CDS | 30.0% | |
GCTACATTTCACTATAACTT+CGG | - | chr7.3:4454959-4454978 | None:intergenic | 30.0% | |
GGAATTGAGGATATTAACAT+GGG | - | chr7.3:4455630-4455649 | None:intergenic | 30.0% | |
GTACAAAATGCACAATATGA+CGG | + | chr7.3:4454579-4454598 | MS.gene072561:CDS | 30.0% | |
GTACAGGTCAAAAAGAAATT+GGG | + | chr7.3:4455324-4455343 | MS.gene072561:intron | 30.0% | |
TAAAGGGGAATATAGTAAGA+GGG | - | chr7.3:4451649-4451668 | None:intergenic | 30.0% | |
TAATATCCTCAATTCCTCTA+TGG | + | chr7.3:4455634-4455653 | MS.gene072561:CDS | 30.0% | |
TAATTACTAACATTTGTCGG+AGG | - | chr7.3:4453701-4453720 | None:intergenic | 30.0% | |
TAGTATATACTACATGGTGA+TGG | - | chr7.3:4451685-4451704 | None:intergenic | 30.0% | |
TCAAATGGGTCATATCAATA+AGG | + | chr7.3:4455711-4455730 | MS.gene072561:CDS | 30.0% | |
TCATGGAATACAAACTGTTA+AGG | + | chr7.3:4453896-4453915 | MS.gene072561:CDS | 30.0% | |
TCCGAGATAAAACATAGATT+TGG | + | chr7.3:4455063-4455082 | MS.gene072561:intron | 30.0% | |
TGCATCCTATATCATAATGT+TGG | + | chr7.3:4454315-4454334 | MS.gene072561:intron | 30.0% | |
TTAAAGACAAGGAACGATAT+TGG | - | chr7.3:4454204-4454223 | None:intergenic | 30.0% | |
TTCACACATTAAAGAAGACT+GGG | + | chr7.3:4451945-4451964 | MS.gene072561:intron | 30.0% | |
TTCATATGTTAATGAGGGAA+TGG | + | chr7.3:4455376-4455395 | MS.gene072561:CDS | 30.0% | |
! | AATGGATCTGAAATTGATTG+AGG | + | chr7.3:4452452-4452471 | MS.gene072561:intron | 30.0% |
! | ATATGGTGACTTTGAAAAAG+AGG | + | chr7.3:4453405-4453424 | MS.gene072561:CDS | 30.0% |
! | GAAAAAGTCTCAAGTTGTAT+AGG | + | chr7.3:4454713-4454732 | MS.gene072561:intron | 30.0% |
!! | GCTTTGGGAAAATAGAAAAT+AGG | + | chr7.3:4454078-4454097 | MS.gene072561:intron | 30.0% |
!! | GTTGAAGACAATTGATTTTC+TGG | - | chr7.3:4452304-4452323 | None:intergenic | 30.0% |
!! | GTTTTCAGGACAAATAGAAA+AGG | - | chr7.3:4454991-4455010 | None:intergenic | 30.0% |
!!! | AGTTTTGAAATGCATCCAAA+AGG | - | chr7.3:4454693-4454712 | None:intergenic | 30.0% |
!!! | CAGGATTATTACTAGTTTTC+AGG | - | chr7.3:4455005-4455024 | None:intergenic | 30.0% |
!!! | CTTTTTCAAAGTCACCATAT+AGG | - | chr7.3:4453405-4453424 | None:intergenic | 30.0% |
!!! | GAAGAAATGTTTTGTTTGTG+AGG | + | chr7.3:4452585-4452604 | MS.gene072561:intron | 30.0% |
AAACCTCTTAATGAATGGAC+TGG | - | chr7.3:4451847-4451866 | None:intergenic | 35.0% | |
AAACTTGACAAACCTTTCTG+TGG | + | chr7.3:4455176-4455195 | MS.gene072561:intron | 35.0% | |
AAATTTGGGTATGCGAATCT+CGG | - | chr7.3:4452354-4452373 | None:intergenic | 35.0% | |
AACAGTTTGTATTCCATGAG+AGG | - | chr7.3:4453895-4453914 | None:intergenic | 35.0% | |
AACATTAAACTCCAACACAC+AGG | + | chr7.3:4452190-4452209 | MS.gene072561:intron | 35.0% | |
ACAGAAAGGTTTGTCAAGTT+TGG | - | chr7.3:4455177-4455196 | None:intergenic | 35.0% | |
ACATAATTGGATCTTCATGG+AGG | - | chr7.3:4453380-4453399 | None:intergenic | 35.0% | |
ACATTAAACTCCAACACACA+GGG | + | chr7.3:4452191-4452210 | MS.gene072561:intron | 35.0% | |
ACTGCTTGATATATCCATAG+AGG | - | chr7.3:4455651-4455670 | None:intergenic | 35.0% | |
AGAAAATAGGCAAGATTGCA+AGG | + | chr7.3:4454091-4454110 | MS.gene072561:intron | 35.0% | |
AGCATTAAAGAGACATACCT+TGG | - | chr7.3:4451808-4451827 | None:intergenic | 35.0% | |
AGCTGAAATGTACATTGATG+GGG | + | chr7.3:4455466-4455485 | MS.gene072561:CDS | 35.0% | |
ATAAATGTTGGGAGTAGACA+AGG | - | chr7.3:4451909-4451928 | None:intergenic | 35.0% | |
ATCTCTAAACCAGCAAGAAA+AGG | + | chr7.3:4454284-4454303 | MS.gene072561:CDS | 35.0% | |
ATTCAATTGGAGTGTGCATT+CGG | + | chr7.3:4453617-4453636 | MS.gene072561:CDS | 35.0% | |
CAATGAAGCTTCATTAAGAG+AGG | + | chr7.3:4453941-4453960 | MS.gene072561:CDS | 35.0% | |
CACCATATAGGACACATAAT+TGG | - | chr7.3:4453393-4453412 | None:intergenic | 35.0% | |
CCAATTGATACAACAACACT+TGG | + | chr7.3:4454534-4454553 | MS.gene072561:CDS | 35.0% | |
CTAAAGGGGAATATAGTAAG+AGG | - | chr7.3:4451650-4451669 | None:intergenic | 35.0% | |
CTCTCTTAATGAAGCTTCAT+TGG | - | chr7.3:4453943-4453962 | None:intergenic | 35.0% | |
CTGAAAGGGATACGTAAAAA+TGG | + | chr7.3:4453849-4453868 | MS.gene072561:CDS | 35.0% | |
GAATATAGTAAGAGGGTGAA+TGG | - | chr7.3:4451642-4451661 | None:intergenic | 35.0% | |
GACACATAATTGGATCTTCA+TGG | - | chr7.3:4453383-4453402 | None:intergenic | 35.0% | |
GAGCTGAAATGTACATTGAT+GGG | + | chr7.3:4455465-4455484 | MS.gene072561:CDS | 35.0% | |
GCATTAAAGAGACATACCTT+GGG | - | chr7.3:4451807-4451826 | None:intergenic | 35.0% | |
GGAAAAGAAGAACTGTTGAA+AGG | + | chr7.3:4453475-4453494 | MS.gene072561:CDS | 35.0% | |
GTGATAAATCAAAAGCAGTG+TGG | + | chr7.3:4455669-4455688 | MS.gene072561:CDS | 35.0% | |
GTTCACACATTAAAGAAGAC+TGG | + | chr7.3:4451944-4451963 | MS.gene072561:intron | 35.0% | |
GTTGTTGTATCAATTGGCAA+TGG | - | chr7.3:4454531-4454550 | None:intergenic | 35.0% | |
TAAATGTTGGGAGTAGACAA+GGG | - | chr7.3:4451908-4451927 | None:intergenic | 35.0% | |
TAATTAGGGTGAACGAATCT+AGG | - | chr7.3:4452402-4452421 | None:intergenic | 35.0% | |
TATTCAGAGTGGACCTTATA+TGG | + | chr7.3:4454358-4454377 | MS.gene072561:intron | 35.0% | |
TCTGAATATTCACAGCCAAA+GGG | - | chr7.3:4454346-4454365 | None:intergenic | 35.0% | |
TGATACAACAACACTTGGAT+TGG | + | chr7.3:4454539-4454558 | MS.gene072561:CDS | 35.0% | |
TGCAAGACAAAATGTTAGTC+TGG | - | chr7.3:4454856-4454875 | None:intergenic | 35.0% | |
TGCAATTTATAAGGTTGTGG+AGG | + | chr7.3:4454224-4454243 | MS.gene072561:CDS | 35.0% | |
TGCTATTGACACATTAGAGA+AGG | - | chr7.3:4452783-4452802 | None:intergenic | 35.0% | |
TGTTTCATCATGTTGGAAAG+TGG | + | chr7.3:4452137-4452156 | MS.gene072561:intron | 35.0% | |
TTATGTCCAACACATTTGGA+AGG | + | chr7.3:4453212-4453231 | MS.gene072561:CDS | 35.0% | |
TTTCCAGTCCATTCATTAAG+AGG | + | chr7.3:4451841-4451860 | MS.gene072561:intron | 35.0% | |
! | AAACACAAACCTTTTCTTGC+TGG | - | chr7.3:4454296-4454315 | None:intergenic | 35.0% |
! | ACAGAATTTTCACAAAGTCC+AGG | + | chr7.3:4453272-4453291 | MS.gene072561:CDS | 35.0% |
! | ACTGCGGATTTATGGATTTT+GGG | + | chr7.3:4452561-4452580 | MS.gene072561:intron | 35.0% |
! | ACTTTTACTTGAACAACGGT+TGG | - | chr7.3:4453065-4453084 | None:intergenic | 35.0% |
! | ATAATGTTGGTAGATCCCTT+TGG | + | chr7.3:4454328-4454347 | MS.gene072561:intron | 35.0% |
! | CATACGGAAATAAAAGGTGT+TGG | - | chr7.3:4451464-4451483 | None:intergenic | 35.0% |
! | CCAAGTGTTGTTGTATCAAT+TGG | - | chr7.3:4454537-4454556 | None:intergenic | 35.0% |
! | GATCTGAAATTGATTGAGGT+GGG | + | chr7.3:4452456-4452475 | MS.gene072561:intron | 35.0% |
! | GTGACTTTGAAAAAGAGGAT+TGG | + | chr7.3:4453410-4453429 | MS.gene072561:CDS | 35.0% |
! | TCACATTTTCCAGTTGTAGA+AGG | + | chr7.3:4455500-4455519 | MS.gene072561:CDS | 35.0% |
! | TGATTGCAGATTGCATTTTG+CGG | + | chr7.3:4452523-4452542 | MS.gene072561:intron | 35.0% |
! | TTTTATTCGCTTAGTACTGC+TGG | - | chr7.3:4451403-4451422 | None:intergenic | 35.0% |
! | TTTTTCTGACTGCGGATTTA+TGG | + | chr7.3:4452553-4452572 | MS.gene072561:intron | 35.0% |
!! | GGTGAAATTTTGTTGTGTCA+TGG | + | chr7.3:4455084-4455103 | MS.gene072561:intron | 35.0% |
!!! | TCTCCTTTTGTTGTTCTTCT+CGG | - | chr7.3:4451440-4451459 | None:intergenic | 35.0% |
AAGAGACATACCTTGGGTTT+AGG | - | chr7.3:4451801-4451820 | None:intergenic | 40.0% | |
AAGTAAGGGTTCCAAGCAAA+AGG | - | chr7.3:4451594-4451613 | None:intergenic | 40.0% | |
ACGCTTATGTCCAACACATT+TGG | + | chr7.3:4453208-4453227 | MS.gene072561:CDS | 40.0% | |
AGGGAAGAAACGGTCAATTT+CGG | + | chr7.3:4453569-4453588 | MS.gene072561:CDS | 40.0% | |
AGGTTGGGATTGCTATCAAA+TGG | + | chr7.3:4455696-4455715 | MS.gene072561:CDS | 40.0% | |
ATACCACGAAACAATCACGT+CGG | + | chr7.3:4455443-4455462 | MS.gene072561:CDS | 40.0% | |
ATCAAAAGCAGTGTGGTGTA+AGG | + | chr7.3:4455676-4455695 | MS.gene072561:CDS | 40.0% | |
ATGGAGCAAGAAAGGTCTAA+AGG | - | chr7.3:4451666-4451685 | None:intergenic | 40.0% | |
ATTGACACATTAGAGAAGGC+TGG | - | chr7.3:4452779-4452798 | None:intergenic | 40.0% | |
ATTTCTCTTATGTCTGGCAC+TGG | - | chr7.3:4455425-4455444 | None:intergenic | 40.0% | |
CATACCTCATCATTCAACGA+TGG | - | chr7.3:4453825-4453844 | None:intergenic | 40.0% | |
CATCGTTGAATGATGAGGTA+TGG | + | chr7.3:4453823-4453842 | MS.gene072561:CDS | 40.0% | |
CGTGGTATTTCTCTTATGTC+TGG | - | chr7.3:4455431-4455450 | None:intergenic | 40.0% | |
CTCTGAATATTCACAGCCAA+AGG | - | chr7.3:4454347-4454366 | None:intergenic | 40.0% | |
CTGCCGAGGAATTAAAAATC+CGG | - | chr7.3:4452715-4452734 | None:intergenic | 40.0% | |
GAAATGTACATTGATGGGGA+TGG | + | chr7.3:4455470-4455489 | MS.gene072561:CDS | 40.0% | |
GAACCGAGAAGAACAACAAA+AGG | + | chr7.3:4451434-4451453 | MS.gene072561:CDS | 40.0% | |
GAATCTCGGTGAACGAATTT+GGG | - | chr7.3:4452340-4452359 | None:intergenic | 40.0% | |
GCAAGATTGCAAGGAATTCA+TGG | + | chr7.3:4454100-4454119 | MS.gene072561:CDS | 40.0% | |
GGAGCTGAAATGTACATTGA+TGG | + | chr7.3:4455464-4455483 | MS.gene072561:CDS | 40.0% | |
GGTTGGGATTGCTATCAAAT+GGG | + | chr7.3:4455697-4455716 | MS.gene072561:CDS | 40.0% | |
TAATGAAGTTCCCTGTGTGT+TGG | - | chr7.3:4452204-4452223 | None:intergenic | 40.0% | |
TACATTGATGGGGATGGTTA+TGG | + | chr7.3:4455476-4455495 | MS.gene072561:CDS | 40.0% | |
TAGAAAGTCAGACTGTTGCA+GGG | - | chr7.3:4454616-4454635 | None:intergenic | 40.0% | |
TAGTCGTAGTTGTGATGACA+AGG | + | chr7.3:4451359-4451378 | MS.gene072561:CDS | 40.0% | |
TCACGCAGTTCAATTTGAAG+TGG | - | chr7.3:4453319-4453338 | None:intergenic | 40.0% | |
TGGAGCAAGAAAGGTCTAAA+GGG | - | chr7.3:4451665-4451684 | None:intergenic | 40.0% | |
TGGTAAACTTGACAAGCAGT+TGG | + | chr7.3:4453869-4453888 | MS.gene072561:CDS | 40.0% | |
TTAACTACCGAGGATTTCCT+CGG | + | chr7.3:4452676-4452695 | MS.gene072561:intron | 40.0% | |
TTAACTACCGAGGATTTCCT+CGG | - | chr7.3:4452695-4452676 | None:intergenic | 40.0% | |
TTACTTGAACAACGGTTGGT+TGG | - | chr7.3:4453061-4453080 | None:intergenic | 40.0% | |
TTCAATTGGAGTGTGCATTC+GGG | + | chr7.3:4453618-4453637 | MS.gene072561:CDS | 40.0% | |
TTGACACATTAGAGAAGGCT+GGG | - | chr7.3:4452778-4452797 | None:intergenic | 40.0% | |
TTGGCTGTGAATATTCAGAG+TGG | + | chr7.3:4454347-4454366 | MS.gene072561:intron | 40.0% | |
! | AAAATACGTTTTTGCCCCCT+CGG | + | chr7.3:4451978-4451997 | MS.gene072561:intron | 40.0% |
! | ACCTACCAGTTTTCGAAGTA+AGG | - | chr7.3:4451609-4451628 | None:intergenic | 40.0% |
! | ACTGCCGAGGAATTTAAAAC+CGG | + | chr7.3:4452007-4452026 | MS.gene072561:intron | 40.0% |
! | AGGTAGAAGCGAACCTTTTA+AGG | + | chr7.3:4453642-4453661 | MS.gene072561:CDS | 40.0% |
! | AGTTCTTCTTTTCCCTCTCT+TGG | - | chr7.3:4453469-4453488 | None:intergenic | 40.0% |
! | CATTTTCCAGTTGTAGAAGG+TGG | + | chr7.3:4455503-4455522 | MS.gene072561:CDS | 40.0% |
! | CCTACCAGTTTTCGAAGTAA+GGG | - | chr7.3:4451608-4451627 | None:intergenic | 40.0% |
! | GACTGCGGATTTATGGATTT+TGG | + | chr7.3:4452560-4452579 | MS.gene072561:intron | 40.0% |
! | GGATCTGAAATTGATTGAGG+TGG | + | chr7.3:4452455-4452474 | MS.gene072561:intron | 40.0% |
! | GTGGAGGTGACTTTTGATAA+TGG | + | chr7.3:4454240-4454259 | MS.gene072561:CDS | 40.0% |
! | TACAACAACACTTGGATTGG+CGG | + | chr7.3:4454542-4454561 | MS.gene072561:CDS | 40.0% |
! | TACTTGAACAACGGTTGGTT+GGG | - | chr7.3:4453060-4453079 | None:intergenic | 40.0% |
! | TAGGCATGTGATGGTGAATT+TGG | - | chr7.3:4452383-4452402 | None:intergenic | 40.0% |
!! | ATAGGTGTTGAGTCTTGAAG+AGG | + | chr7.3:4454731-4454750 | MS.gene072561:intron | 40.0% |
!! | ATGAAGGAGTGTTAGGACAA+TGG | + | chr7.3:4452895-4452914 | MS.gene072561:intron | 40.0% |
!! | CAGCCGGATTTTTAATTCCT+CGG | + | chr7.3:4452709-4452728 | MS.gene072561:intron | 40.0% |
!! | GACTTTCTAGTTTGTCAGCA+AGG | + | chr7.3:4454627-4454646 | MS.gene072561:CDS | 40.0% |
!! | TAGGTGTTGAGTCTTGAAGA+GGG | + | chr7.3:4454732-4454751 | MS.gene072561:intron | 40.0% |
AAAAGAGGATTGGACAGCTG+AGG | + | chr7.3:4453420-4453439 | MS.gene072561:CDS | 45.0% | |
AAACGGTCAATTTCGGCTAG+GGG | + | chr7.3:4453576-4453595 | MS.gene072561:CDS | 45.0% | |
AAAGCAGTGTGGTGTAAGGT+TGG | + | chr7.3:4455680-4455699 | MS.gene072561:CDS | 45.0% | |
AAAGTCCAGGATCAAAGCTG+AGG | + | chr7.3:4453285-4453304 | MS.gene072561:CDS | 45.0% | |
AAATCAGCAACGCGTAGTCA+TGG | + | chr7.3:4453345-4453364 | MS.gene072561:CDS | 45.0% | |
AAGCAGTGTGGTGTAAGGTT+GGG | + | chr7.3:4455681-4455700 | MS.gene072561:CDS | 45.0% | |
AAGTCCAGGATCAAAGCTGA+GGG | + | chr7.3:4453286-4453305 | MS.gene072561:CDS | 45.0% | |
ACGTCTCCTTCCAAATGTGT+TGG | - | chr7.3:4453221-4453240 | None:intergenic | 45.0% | |
AGAAACGGTCAATTTCGGCT+AGG | + | chr7.3:4453574-4453593 | MS.gene072561:CDS | 45.0% | |
AGACATACCTTGGGTTTAGG+TGG | - | chr7.3:4451798-4451817 | None:intergenic | 45.0% | |
ATCATGTTGGAAAGTGGCAG+GGG | + | chr7.3:4452143-4452162 | MS.gene072561:intron | 45.0% | |
ATGAGGTATGGCGTCTGAAA+GGG | + | chr7.3:4453835-4453854 | MS.gene072561:CDS | 45.0% | |
CAAATTGCACCTCCAAGAGA+GGG | + | chr7.3:4453454-4453473 | MS.gene072561:CDS | 45.0% | |
CATCATGTTGGAAAGTGGCA+GGG | + | chr7.3:4452142-4452161 | MS.gene072561:intron | 45.0% | |
CCCTTACTTCGAAAACTGGT+AGG | + | chr7.3:4451605-4451624 | MS.gene072561:intron | 45.0% | |
CGAACATCCAGGACCTTAAA+AGG | - | chr7.3:4453658-4453677 | None:intergenic | 45.0% | |
CGAATCTCGGTGAACGAATT+TGG | - | chr7.3:4452341-4452360 | None:intergenic | 45.0% | |
CGGACCAGACAGATAGAATT+AGG | - | chr7.3:4454808-4454827 | None:intergenic | 45.0% | |
CTAGAAAGTCAGACTGTTGC+AGG | - | chr7.3:4454617-4454636 | None:intergenic | 45.0% | |
GAAACGGTCAATTTCGGCTA+GGG | + | chr7.3:4453575-4453594 | MS.gene072561:CDS | 45.0% | |
GAACGAATCTAGGCATGTGA+TGG | - | chr7.3:4452392-4452411 | None:intergenic | 45.0% | |
GAATAGCCACCTTCTACAAC+TGG | - | chr7.3:4455512-4455531 | None:intergenic | 45.0% | |
GCACTGGATCAACATAGATC+TGG | - | chr7.3:4455409-4455428 | None:intergenic | 45.0% | |
GGAACCCTTACTTCGAAAAC+TGG | + | chr7.3:4451601-4451620 | MS.gene072561:CDS | 45.0% | |
GGAGCAAGAAAGGTCTAAAG+GGG | - | chr7.3:4451664-4451683 | None:intergenic | 45.0% | |
GTTCCTCAACCAGATACAAG+AGG | + | chr7.3:4451762-4451781 | MS.gene072561:intron | 45.0% | |
GTTTAGTGACTGCCACAGAA+AGG | - | chr7.3:4455191-4455210 | None:intergenic | 45.0% | |
TATGAGGGATGCTATACACC+AGG | - | chr7.3:4455024-4455043 | None:intergenic | 45.0% | |
TCAAATTGCACCTCCAAGAG+AGG | + | chr7.3:4453453-4453472 | MS.gene072561:CDS | 45.0% | |
TCATCATGTTGGAAAGTGGC+AGG | + | chr7.3:4452141-4452160 | MS.gene072561:intron | 45.0% | |
TCGTCCATCGTTGAATGATG+AGG | + | chr7.3:4453818-4453837 | MS.gene072561:CDS | 45.0% | |
TGTAGAAGGTGGCTATTCGA+TGG | + | chr7.3:4455514-4455533 | MS.gene072561:CDS | 45.0% | |
TTAACTGCCGAGGAAATCCT+CGG | + | chr7.3:4452036-4452055 | MS.gene072561:intron | 45.0% | |
TTAACTGCCGAGGAAATCCT+CGG | - | chr7.3:4452055-4452036 | None:intergenic | 45.0% | |
TTATGAACAGTGCGAGAGAG+AGG | + | chr7.3:4452611-4452630 | MS.gene072561:intron | 45.0% | |
! | AAAATACGCTTTTGCCCCCT+CGG | - | chr7.3:4452745-4452764 | None:intergenic | 45.0% |
! | TCTTCTTTTCCCTCTCTTGG+AGG | - | chr7.3:4453466-4453485 | None:intergenic | 45.0% |
! | TTTAAGGTCCTGGATGTTCG+AGG | + | chr7.3:4453658-4453677 | MS.gene072561:CDS | 45.0% |
!! | ACAACAACACTTGGATTGGC+GGG | + | chr7.3:4454543-4454562 | MS.gene072561:CDS | 45.0% |
!! | ACATGGTGATGGAGCAAGAA+AGG | - | chr7.3:4451674-4451693 | None:intergenic | 45.0% |
!!! | AAGCGAACCTTTTAAGGTCC+TGG | + | chr7.3:4453648-4453667 | MS.gene072561:CDS | 45.0% |
!!! | GACTGCGTTTTTTCTGACTG+CGG | + | chr7.3:4452545-4452564 | MS.gene072561:intron | 45.0% |
!!! | GCAGCCGGTTTTAAATTCCT+CGG | - | chr7.3:4452014-4452033 | None:intergenic | 45.0% |
!! | ATTAAAAAATTATGTAATTA+GGG | - | chr7.3:4452416-4452435 | None:intergenic | 5.0% |
ATTGGAGTGTGCATTCGGGA+AGG | + | chr7.3:4453622-4453641 | MS.gene072561:CDS | 50.0% | |
CAACGCGTAGTCATGGAAGA+AGG | + | chr7.3:4453352-4453371 | MS.gene072561:CDS | 50.0% | |
CAAGCAAAAGGCGAATGCAG+TGG | - | chr7.3:4451582-4451601 | None:intergenic | 50.0% | |
CATACCTTGGGTTTAGGTGG+CGG | - | chr7.3:4451795-4451814 | None:intergenic | 50.0% | |
CGGTGAACGAATTTGGGCAT+GGG | - | chr7.3:4452334-4452353 | None:intergenic | 50.0% | |
GATGAGGTATGGCGTCTGAA+AGG | + | chr7.3:4453834-4453853 | MS.gene072561:CDS | 50.0% | |
GGCTCGCATGTTGCATACAT+AGG | - | chr7.3:4455560-4455579 | None:intergenic | 50.0% | |
GGTGAATCGCCTCTTGTATC+TGG | - | chr7.3:4451774-4451793 | None:intergenic | 50.0% | |
GTCCTGGATGTTCGAGGAAA+GGG | + | chr7.3:4453664-4453683 | MS.gene072561:CDS | 50.0% | |
GTTGGTTGGGTCAGACAAAC+TGG | - | chr7.3:4453047-4453066 | None:intergenic | 50.0% | |
TACCCTTTCCTCGAACATCC+AGG | - | chr7.3:4453669-4453688 | None:intergenic | 50.0% | |
TCGCCTCTTGTATCTGGTTG+AGG | - | chr7.3:4451768-4451787 | None:intergenic | 50.0% | |
TCGGTGAACGAATTTGGGCA+TGG | - | chr7.3:4452335-4452354 | None:intergenic | 50.0% | |
! | CACTGCATTCGCCTTTTGCT+TGG | + | chr7.3:4451580-4451599 | MS.gene072561:CDS | 50.0% |
! | CGCTTAGTACTGCTGGTTGA+AGG | - | chr7.3:4451396-4451415 | None:intergenic | 50.0% |
! | CTTGTGTCATTGACAGCGCT+TGG | + | chr7.3:4454458-4454477 | MS.gene072561:intron | 50.0% |
!! | CAACAACACTTGGATTGGCG+GGG | + | chr7.3:4454544-4454563 | MS.gene072561:CDS | 50.0% |
GCTCCGACGTGATTGTTTCG+TGG | - | chr7.3:4455449-4455468 | None:intergenic | 55.0% | |
GGTCCTGGATGTTCGAGGAA+AGG | + | chr7.3:4453663-4453682 | MS.gene072561:CDS | 55.0% | |
TCCAGGATCAAAGCTGAGGG+AGG | + | chr7.3:4453289-4453308 | MS.gene072561:CDS | 55.0% | |
TCCTCGGCAGTTAACTACCG+AGG | + | chr7.3:4452666-4452685 | MS.gene072561:intron | 55.0% | |
TCCTCGGCAGTTAACTACCG+AGG | - | chr7.3:4452685-4452666 | None:intergenic | 55.0% | |
TCCTCGGTAGTTAACTGCCG+AGG | + | chr7.3:4452052-4452071 | MS.gene072561:intron | 55.0% | |
TCCTCGGTAGTTAACTGCCG+AGG | - | chr7.3:4452071-4452052 | None:intergenic | 55.0% | |
TTCACCGCCACCTAAACCCA+AGG | + | chr7.3:4451788-4451807 | MS.gene072561:CDS | 55.0% | |
! | ACCTCCCTCAGCTTTGATCC+TGG | - | chr7.3:4453293-4453312 | None:intergenic | 55.0% |
! | GACAAGCAGTTGGCCTCTCA+TGG | + | chr7.3:4453879-4453898 | MS.gene072561:CDS | 55.0% |
! | GTGTCATTGACAGCGCTTGG+TGG | + | chr7.3:4454461-4454480 | MS.gene072561:intron | 55.0% |
AGTGGCAGGGGACGTGATTC+TGG | + | chr7.3:4452155-4452174 | MS.gene072561:intron | 60.0% | |
CCTCGGCAGTTAACTGCAGC+CGG | + | chr7.3:4452693-4452712 | MS.gene072561:intron | 60.0% | |
CCTCGGCAGTTAACTGCAGC+CGG | - | chr7.3:4452712-4452693 | None:intergenic | 60.0% | |
CCTCGGCAGTTAACTGCCGA+GGG | + | chr7.3:4451995-4452014 | MS.gene072561:intron | 60.0% | |
CCTCGGCAGTTAACTGCCGA+GGG | - | chr7.3:4452014-4451995 | None:intergenic | 60.0% | |
CTCGGCAGTTAACTGCCGAG+GGG | + | chr7.3:4451996-4452015 | MS.gene072561:intron | 60.0% | |
CTCGGCAGTTAACTGCCGAG+GGG | - | chr7.3:4452015-4451996 | None:intergenic | 60.0% | |
GCAGGGGACGTGATTCTGGA+AGG | + | chr7.3:4452159-4452178 | MS.gene072561:intron | 60.0% | |
TCCTCGGCAGTTAACTGCCG+AGG | + | chr7.3:4452725-4452744 | MS.gene072561:intron | 60.0% | |
TCCTCGGCAGTTAACTGCCG+AGG | - | chr7.3:4452744-4452725 | None:intergenic | 60.0% | |
TCGGCAGTTAACTGCCGAGG+GGG | + | chr7.3:4451997-4452016 | MS.gene072561:intron | 60.0% | |
TCGGCAGTTAACTGCCGAGG+GGG | - | chr7.3:4452016-4451997 | None:intergenic | 60.0% | |
CCCTCGGCAGTTAACTGCCG+AGG | + | chr7.3:4451994-4452013 | MS.gene072561:intron | 65.0% | |
CCCTCGGCAGTTAACTGCCG+AGG | - | chr7.3:4452013-4451994 | None:intergenic | 65.0% | |
CCGGCTGCAGTTAACTGCCG+AGG | + | chr7.3:4452026-4452045 | MS.gene072561:intron | 65.0% | |
CCGGCTGCAGTTAACTGCCG+AGG | - | chr7.3:4452045-4452026 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 4451324 | 4455781 | 4451324 | ID=MS.gene072561 |
chr7.3 | mRNA | 4451324 | 4455781 | 4451324 | ID=MS.gene072561.t1;Parent=MS.gene072561 |
chr7.3 | exon | 4451324 | 4451478 | 4451324 | ID=MS.gene072561.t1.exon1;Parent=MS.gene072561.t1 |
chr7.3 | CDS | 4451324 | 4451478 | 4451324 | ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1 |
chr7.3 | exon | 4451562 | 4451622 | 4451562 | ID=MS.gene072561.t1.exon2;Parent=MS.gene072561.t1 |
chr7.3 | CDS | 4451562 | 4451622 | 4451562 | ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1 |
chr7.3 | exon | 4451775 | 4451809 | 4451775 | ID=MS.gene072561.t1.exon3;Parent=MS.gene072561.t1 |
chr7.3 | CDS | 4451775 | 4451809 | 4451775 | ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1 |
chr7.3 | exon | 4453198 | 4453685 | 4453198 | ID=MS.gene072561.t1.exon4;Parent=MS.gene072561.t1 |
chr7.3 | CDS | 4453198 | 4453685 | 4453198 | ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1 |
chr7.3 | exon | 4453802 | 4453962 | 4453802 | ID=MS.gene072561.t1.exon5;Parent=MS.gene072561.t1 |
chr7.3 | CDS | 4453802 | 4453962 | 4453802 | ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1 |
chr7.3 | exon | 4454093 | 4454305 | 4454093 | ID=MS.gene072561.t1.exon6;Parent=MS.gene072561.t1 |
chr7.3 | CDS | 4454093 | 4454305 | 4454093 | ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1 |
chr7.3 | exon | 4454474 | 4454648 | 4454474 | ID=MS.gene072561.t1.exon7;Parent=MS.gene072561.t1 |
chr7.3 | CDS | 4454474 | 4454648 | 4454474 | ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1 |
chr7.3 | exon | 4455330 | 4455781 | 4455330 | ID=MS.gene072561.t1.exon8;Parent=MS.gene072561.t1 |
chr7.3 | CDS | 4455330 | 4455781 | 4455330 | ID=cds.MS.gene072561.t1;Parent=MS.gene072561.t1 |
Gene Sequence |
Protein sequence |